Psyllid ID: psy4237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSNQMQVRSHISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Secondary Structure (PSIPRED)
cccccccccccEEEccccccEEEcccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHcccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccccccEEEEcccccccccccccHHHHccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHcccEEEEEEEEcccccEEccEEccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSNQMQVRSHISLHHIFKTAvrsasfgpqfidpifkhediDRIIAnnelknytdvpvkpptsfqtcstfynpVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKynkatsdeeresiildpYVIIDKAIENTKPILKLRSIKRAAvtyqvpipisdkeARFKCMKWHIEiakdkpsevrfsDNLAQILIDGadnkgkvvkkktdlHRQCEANRAYAHYYFG
Flexible Loop (DISEMBL)
MSNQMQVRSHISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNelknytdvpvkpptsfqtcstfYNPVKEKFINYMMKKGNKELAREVFEYTVKSIkriqiekynkatsdeeresiildpyviidkaientkpilklrsikraavtyqvpipisdkeaRFKCMKWHIEiakdkpsevrfSDNLAQILidgadnkgkvvkkktdlhrqceanrayahyyfg
Low Complexity Region (SEG)
MSNQMQVRSHISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered region (IsUnstruct)
*********HISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKA*****RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF*
Disordered Region (DISOPRED)
***********SLHHIFKTAVRSASFGPQFIDPIFK*************************SFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEK**************LDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDK****RFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered Region (DISEMBL)
*********HISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Disordered Region (DISPRO)
****MQVRSHISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTD*PVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEER*SIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNQMQVRSHISLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9VKX4	218	28S ribosomal protein S7,	yes	N/A	0.897	0.926	0.387	1e-38
Q6DDY9	233	28S ribosomal protein S7,	N/A	N/A	0.888	0.858	0.389	1e-36
Q498Z6	228	28S ribosomal protein S7,	yes	N/A	0.942	0.929	0.382	4e-36
Q3T040	242	28S ribosomal protein S7,	yes	N/A	0.902	0.838	0.376	6e-35
Q5I0K8	242	28S ribosomal protein S7,	yes	N/A	0.911	0.847	0.366	1e-34
Q80X85	242	28S ribosomal protein S7,	yes	N/A	0.902	0.838	0.372	2e-34
Q5ZMU0	233	28S ribosomal protein S7,	yes	N/A	0.911	0.879	0.375	9e-34
Q9Y2R9	242	28S ribosomal protein S7,	yes	N/A	0.902	0.838	0.372	2e-32
Q95Q11	222	28S ribosomal protein S7,	yes	N/A	0.906	0.918	0.357	2e-28
Q60R52	222	28S ribosomal protein S7,	N/A	N/A	0.844	0.855	0.369	1e-27

>sp|Q9VKX4|RT07_DROME 28S ribosomal protein S7, mitochondrial OS=Drosophila melanogaster GN=mRpS7 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 130/209 (62%), Gaps = 7/209 (3%)

Query: 19  TAVRSASFGP-QFIDPIF-KHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEK 76
           + +R  S  P  +++PI  K++ +++    N+L     VP+K   +  + + F++  K K
Sbjct: 15  SCLRLMSVYPTHYVEPIVQKYKQLEQ---KNDLSKLYHVPIKAAVNKSSDTIFHDDTKHK 71

Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
            INY+ KKGN  LAR +   T++ IKR Q E  N A    E+ +I  +P  ++ +A+EN 
Sbjct: 72  MINYITKKGNSALARTLLSKTLELIKRTQTEHMNLAKG--EKTTINTNPETLLKQAVENC 129

Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           +P+L++ +IKR  VTYQVP+PI+ K + F  MKW +E A++K  +V   + LA  ++D A
Sbjct: 130 RPLLQVTAIKRGGVTYQVPVPITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAA 189

Query: 197 DNKGKVVKKKTDLHRQCEANRAYAHYYFG 225
             +G+V+K+K DLHR CE+NRAYAHY + 
Sbjct: 190 HGQGRVIKRKDDLHRLCESNRAYAHYRWS 218

Drosophila melanogaster (taxid: 7227)

>sp|Q6DDY9|RT07_XENLA 28S ribosomal protein S7, mitochondrial OS=Xenopus laevis GN=mrps7 PE=2 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 18/218 (8%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDV-----------PVKPPTSFQTCS 67
           T VR + + PQ++DP     + D+ + +  L+  ++            P+K   S  T S
Sbjct: 21  TQVRWSRYSPQYLDP-----ETDKQVYSRPLEELSEQERTERELKIVRPIKAAPSNVTSS 75

Query: 68  TFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 127
            F +P   KF N MMK GNK L+R +   T++ IKR Q+EKY KA  +EER SI  +PY 
Sbjct: 76  VFSDPTISKFTNMMMKGGNKNLSRSIMNQTLEQIKRTQLEKYYKA-PEEERASIECNPYT 134

Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD-KPSEVRFSD 186
           I  +A+ N +PI+ L SI R   +YQVP P+ +   RF  MKW I   +D K       +
Sbjct: 135 IFHQALHNCQPIIGLTSILRGGKSYQVPTPLKENRRRFLAMKWLITECRDNKHRRTLMYE 194

Query: 187 NLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
            L+Q L+D    +G+VVKKK +LH+  EANRA+AH+ +
Sbjct: 195 KLSQALLDAYQMQGEVVKKKHELHKMAEANRAFAHFRW 232

Xenopus laevis (taxid: 8355)

>sp|Q498Z6|RT07_DANRE 28S ribosomal protein S7, mitochondrial OS=Danio rerio GN=mrps7 PE=2 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 13/225 (5%)

Query: 12  SLHHIFK------TAVRSASFGPQFIDPIFKHE----DIDRIIANNELKNYTDV-PVKPP 60
           S+ H+ K        +R + + P ++DP  + +    D +      EL+    V P+K  
Sbjct: 4   SVRHLLKPWTPSLCLMRWSRYNPYYLDPEPRKDAPVSDSELSPEQKELQELKTVRPIKAA 63

Query: 61  TSFQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERES 120
            +  T S F +P+  KFIN MM  GNK LAR +   T+++IKR Q+EKY+K+ +  +RE 
Sbjct: 64  LTGDTSSAFSDPLISKFINMMMYDGNKVLARGIMTQTLETIKRKQVEKYHKSPA-AKREE 122

Query: 121 IILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKP 179
           I  +PY I  +A+EN KP++ L SI++    YQVP+P++D   RF  MKW I E   +K 
Sbjct: 123 IECNPYAIFHQAMENCKPVIGLASIQKGGKFYQVPVPLTDNRRRFMAMKWMITECRTNKQ 182

Query: 180 SEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
                 + L+Q L+    N+G V+K+K DLH+  EANRAYAHY +
Sbjct: 183 GRTLMYEKLSQELLAAFANEGNVIKRKHDLHKMAEANRAYAHYRW 227

Danio rerio (taxid: 7955)

>sp|Q3T040|RT07_BOVIN 28S ribosomal protein S7, mitochondrial OS=Bos taurus GN=MRPS7 PE=1 SV=1

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 125/215 (58%), Gaps = 12/215 (5%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIAN--------NELKNYTDVPVKPPTSFQTCSTFY 70
           T VR + +GP++ DP    E   + +A          EL+    +   P T  +T S F 
Sbjct: 30  TQVRWSRYGPEYQDPQIDKEYYRKPLAQLTEEETYERELRKTQVIKAAPAT--KTSSVFE 87

Query: 71  NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
           +PV  KF N MMK GNK LAR +   T++++KR Q EKY+ A S EE+ ++  +PY I  
Sbjct: 88  DPVISKFTNMMMKGGNKILARSLMTQTLEAVKRKQFEKYH-AASAEEQATVERNPYTIFH 146

Query: 131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLA 189
           +A++N +P++ L  I +    YQVP+P++++  RF  MKW I E  + KP  +   + L+
Sbjct: 147 QALKNCEPVIGLVPILKGGHFYQVPVPLAERRRRFLAMKWMITECREKKPRRMLMPEKLS 206

Query: 190 QILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           Q L++   N+G V+K+K D+H+  EANRA AHY +
Sbjct: 207 QELLEAFCNRGPVIKRKHDMHKMAEANRALAHYRW 241

Bos taurus (taxid: 9913)

>sp|Q5I0K8|RT07_RAT 28S ribosomal protein S7, mitochondrial OS=Rattus norvegicus GN=Mrps7 PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 124/213 (58%), Gaps = 8/213 (3%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVP------VKPPTSFQTCSTFYNP 72
           T VR + + P+F DP+   E   + ++    +   D+       +K   + +T S F +P
Sbjct: 30  TQVRWSRYAPEFRDPLIDKEHYRKQVSELTEEEKYDLELKKTQLIKAAAATETSSVFADP 89

Query: 73  VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
           V  KF N MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  +A
Sbjct: 90  VISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYKIFHEA 148

Query: 133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQI 191
           + N +P++ L  I +    YQVP+P++D+  RF  MKW I E  ++KP  +   + L+  
Sbjct: 149 LRNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRMLMPEKLSHE 208

Query: 192 LIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           L++   N+G V+K+K ++H+  EANRA AHY +
Sbjct: 209 LLEAFHNRGPVIKRKHNMHKMAEANRALAHYRW 241

Rattus norvegicus (taxid: 10116)

>sp|Q80X85|RT07_MOUSE 28S ribosomal protein S7, mitochondrial OS=Mus musculus GN=Mrps7 PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 125/215 (58%), Gaps = 12/215 (5%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIA--------NNELKNYTDVPVKPPTSFQTCSTFY 70
           T VR + + P+F +P+   E   + +A        + ELK    +  K   + +T S F 
Sbjct: 30  TQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKKTQFI--KAAAATETSSVFA 87

Query: 71  NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
           +PV  KF N MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  
Sbjct: 88  DPVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYRIFH 146

Query: 131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLA 189
           +A++N +P++ L  I +    YQVP+P++D+  RF  MKW I E  ++KP      + L+
Sbjct: 147 EALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLS 206

Query: 190 QILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
             L++   N+G V+K+K ++H+  EANRA AHY +
Sbjct: 207 HELLEAFHNRGPVIKRKHNMHKMAEANRALAHYRW 241

Mus musculus (taxid: 10090)

>sp|Q5ZMU0|RT07_CHICK 28S ribosomal protein S7, mitochondrial OS=Gallus gallus GN=MRPS7 PE=2 SV=2

 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 8/213 (3%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDV------PVKPPTSFQTCSTFYNP 72
           T VR + + P F++P    E   +       +           P+K      + S F +P
Sbjct: 21  TQVRWSRYNPSFLEPEVNKELYQKPFNELSEEEKEKQELKAVHPIKAAPPSISSSVFSDP 80

Query: 73  VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
           +  KF N MMK GNK LAR +   T+++IKR Q+EKY++A  D+E+E +  +PYVI  +A
Sbjct: 81  MISKFTNMMMKDGNKVLARSLMAQTLENIKRKQLEKYHRA-PDDEKERVECNPYVIFHQA 139

Query: 133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQI 191
           ++N +PI+ L +I R   TYQVP+P+ D   RF  MKW I E  ++K       + L++ 
Sbjct: 140 LKNCQPIIGLSNITRGGKTYQVPVPLKDNRKRFLAMKWLITECRENKHRRTLMPEKLSEE 199

Query: 192 LIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           LI   +N+G ++KKK  LH+  EANRAYAH+ +
Sbjct: 200 LIQAFNNEGPIIKKKHVLHKMAEANRAYAHFRW 232

Gallus gallus (taxid: 9031)

>sp|Q9Y2R9|RT07_HUMAN 28S ribosomal protein S7, mitochondrial OS=Homo sapiens GN=MRPS7 PE=1 SV=2

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 12/215 (5%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIAN--------NELKNYTDVPVKPPTSFQTCSTFY 70
           T VR + + P+F DP+   E   + +           ELK    +   P  + +T S F 
Sbjct: 30  TQVRWSRYSPEFKDPLIDKEYYRKPVEELTEEEKYVRELKKTQLIKAAP--AGKTSSVFE 87

Query: 71  NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
           +PV  KF N MM  GNK LAR +   T++++KR Q EKY+ A S EE+ +I  +PY I  
Sbjct: 88  DPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYH-AASAEEQATIERNPYTIFH 146

Query: 131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLA 189
           +A++N +P++ L  I +    YQVP+P+ D+  RF  MKW I   +DK  +     + L+
Sbjct: 147 QALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLS 206

Query: 190 QILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
             L++   N+G V+K+K DLH+  EANRA AHY +
Sbjct: 207 HKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYRW 241

Homo sapiens (taxid: 9606)

>sp|Q95Q11|RT07_CAEEL 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis elegans GN=Y57G11C.34 PE=3 SV=2

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 121/210 (57%), Gaps = 6/210 (2%)

Query: 16  IFKTAVRSASFGPQ-FIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVK 74
           I  T   S  + P+ F DP+   +++ + + +++ +N+  + +K   S  T   + + V 
Sbjct: 14  ISSTTSTSNMYDPRVFRDPVTNVQELRKPLDSDDERNF--LFLKAMKSDATPVFYRDHVI 71

Query: 75  EKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIE 134
           +K I    K G KE +R+     ++ IKR Q + + KA S+EE++SI LDP+++  K I+
Sbjct: 72  DKLIRVCTKDGEKETSRKNVLSALEIIKRRQYKAWAKA-SEEEKKSIELDPFLVAKKGIK 130

Query: 135 NTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIA--KDKPSEVRFSDNLAQIL 192
           N  P++KL+ + R   TYQVP PI + EA F+ MK   +I   + K  E  F D LA  L
Sbjct: 131 NCHPLMKLQGVTRGGTTYQVPFPIEEPEAEFRAMKMMRDICRVRSKHGETHFKDILATEL 190

Query: 193 IDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
           +  + N+G  ++ K +LH+ CEANRAYAHY
Sbjct: 191 LAASQNEGSTIQAKQELHKTCEANRAYAHY 220

Caenorhabditis elegans (taxid: 6239)

>sp|Q60R52|RT07_CAEBR 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis briggsae GN=CBG21526 PE=3 SV=2

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 113/195 (57%), Gaps = 5/195 (2%)

Query: 30  FIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKGNKEL 89
           F +P+   +++ + +  ++ +N+  + +K   S  T   + + V +K I    K G KE 
Sbjct: 29  FREPVSNVQELRKPLDVDDERNF--LFLKAMKSDATPVFYRDSVIDKLIRVCTKDGEKET 86

Query: 90  AREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAA 149
           +R+     ++ IKR Q + + KA +DEE++SI LDP+VI  K I+N  P++KL+ + R  
Sbjct: 87  SRKNVLSALEIIKRRQYKAWTKA-NDEEKKSIELDPFVIARKGIKNCHPLMKLQGVTRGG 145

Query: 150 VTYQVPIPISDKEARFKCMKWHIEIA--KDKPSEVRFSDNLAQILIDGADNKGKVVKKKT 207
            TYQVP PI + EA F+ MK   +I   + K  E  F D LA  L+  + N+G  +  K 
Sbjct: 146 TTYQVPFPIEEPEAEFRAMKMMRDICRVRAKHGETHFKDILATELLAASQNEGSTITAKQ 205

Query: 208 DLHRQCEANRAYAHY 222
           +LH+ CEANRAYAHY
Sbjct: 206 ELHKTCEANRAYAHY 220

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
240848991	231	mitochondrial ribosomal protein S7-like	0.906	0.883	0.475	2e-55
312381617	203	hypothetical protein AND_06035 [Anophele	0.893	0.990	0.472	5e-52
158298472	227	AGAP009613-PA [Anopheles gambiae str. PE	0.911	0.903	0.448	5e-51
357616719	238	mitochondrial ribosomal protein S7 [Dana	0.902	0.852	0.472	1e-50
157106466	226	mitochondrial ribosomal protein S7 [Aede	0.915	0.911	0.446	2e-50
346465901	257	hypothetical protein [Amblyomma maculatu	0.942	0.824	0.460	5e-49
427792631	236	Putative ribosomal protein s7, partial [	0.946	0.902	0.436	1e-48
332375662	233	unknown [Dendroctonus ponderosae]	0.933	0.901	0.425	4e-48
340722099	227	PREDICTED: 28S ribosomal protein S7, mit	0.933	0.925	0.452	2e-46
340722101	216	PREDICTED: 28S ribosomal protein S7, mit	0.871	0.907	0.467	2e-46

>gi|240848991|ref|NP_001155408.1| mitochondrial ribosomal protein S7-like [Acyrthosiphon pisum] gi|239790805|dbj|BAH71939.1| ACYPI000999 [Acyrthosiphon pisum]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 147/204 (72%)

Query: 19  TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFI 78
           T  + + + P F +P++K +++D++  + E++NY  +P K   S +TCS F++P+  KFI
Sbjct: 25  TTAKYSVYPPHFAEPVYKKQELDKLYESGEIENYKLIPFKAAKSNETCSIFHDPMVAKFI 84

Query: 79  NYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKP 138
           NYM+ KG K+LAREV E T + IK++Q+EKYN+ T  E++ S+I+DP VI+ KA+ N+KP
Sbjct: 85  NYMLLKGQKKLAREVLEKTFEKIKKLQLEKYNRETDPEKKASMIIDPVVILKKAVANSKP 144

Query: 139 ILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADN 198
           +LKL ++KR    YQVP+PI+DKE+ F  M+W ++  ++K   + F+D +A  LI  ++N
Sbjct: 145 LLKLTAVKRGGSFYQVPVPITDKESTFYAMRWFVQCGREKDKSISFADFMATELIKASNN 204

Query: 199 KGKVVKKKTDLHRQCEANRAYAHY 222
            GKVV KK DLH+QCEANRAYAHY
Sbjct: 205 DGKVVNKKLDLHKQCEANRAYAHY 228

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381617|gb|EFR27326.1| hypothetical protein AND_06035 [Anopheles darlingi]

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 139/201 (69%)

Query: 24  ASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMK 83
           + +GP FI+PI   E+I ++    EL     VP+K   + QT S FY+P+  +F NY+MK
Sbjct: 2   SQYGPHFIEPIVNKEEIAKLQETGELSKIAHVPIKAALANQTTSVFYDPLVSQFTNYVMK 61

Query: 84  KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143
           +GNKELAR + E   ++IKR+Q+E+Y+ A SDEER  I L+P  ++ +A+EN +P+L+L 
Sbjct: 62  QGNKELARGLVEKGFENIKRMQLERYHLAESDEERAKIELNPRKLLHQAVENCRPLLQLT 121

Query: 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVV 203
            IKR  V YQVP+P+++K + F  MKW +E  ++K   V F + +A  ++D A N+GKVV
Sbjct: 122 PIKRGGVRYQVPVPVTEKRSYFLAMKWLLEAVREKERTVHFPEKMAWEILDAAANQGKVV 181

Query: 204 KKKTDLHRQCEANRAYAHYYF 224
           K+K +LHRQCEANRAYAHY +
Sbjct: 182 KRKHELHRQCEANRAYAHYRW 202

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298472|ref|XP_318643.3| AGAP009613-PA [Anopheles gambiae str. PEST] gi|157013898|gb|EAA14573.3| AGAP009613-PA [Anopheles gambiae str. PEST]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 141/205 (68%)

Query: 21  VRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINY 80
            R + +GP FI+PI   + I+ +    +L   + VPVK   S Q CS FY+P+  +F NY
Sbjct: 23  ARMSQYGPHFIEPIVNRDKIEELHKTGDLSKISHVPVKAALSNQNCSVFYDPLVAQFTNY 82

Query: 81  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 140
           +MK+GNK+LAR++ E   ++IKR+Q+E+Y+ + S+EE+  + L+P  ++ +A+EN +P+L
Sbjct: 83  VMKQGNKQLARDLVEKGFENIKRLQLERYHLSESEEEKAKLELNPRRLLHQAVENCRPLL 142

Query: 141 KLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKG 200
           +L  IKR  V YQVP+PI++K + F  MKW +E  ++K   V F + +A  ++D A N+G
Sbjct: 143 QLTPIKRGGVRYQVPVPITEKRSYFLAMKWLLEAIREKERTVHFPEKMAWEILDAAANQG 202

Query: 201 KVVKKKTDLHRQCEANRAYAHYYFG 225
           KVVK+K +LHRQCEANRAYAHY + 
Sbjct: 203 KVVKRKHELHRQCEANRAYAHYRWS 227

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616719|gb|EHJ70361.1| mitochondrial ribosomal protein S7 [Danaus plexippus]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 142/203 (69%)

Query: 22  RSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYM 81
           R+ SF   F +PIF+ ED  ++I NNEL     VPVKPP +++T S +++ + +K IN++
Sbjct: 35  RATSFPDYFQNPIFRKEDQAKLIENNELTKLAAVPVKPPAAYETSSVYHDALVDKVINHV 94

Query: 82  MKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILK 141
           MK GNK+LAR + E   ++IKR QIE+Y+ A++ E++  I+L+P  ++ +A+EN KP+L+
Sbjct: 95  MKMGNKQLARSLVEKAFENIKRKQIERYHLASTPEDKAKILLNPKDVLHRAVENCKPLLQ 154

Query: 142 LRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGK 201
           L  IKR  +TYQVP PI++K + F  +KW ++ + DK   V F +  A  L+D A+N GK
Sbjct: 155 LLPIKRGGITYQVPGPITEKRSLFLAVKWLLDASNDKERTVHFPEQFAWELLDAANNTGK 214

Query: 202 VVKKKTDLHRQCEANRAYAHYYF 224
           VVK+K DLHR CEANRAYAHY +
Sbjct: 215 VVKRKQDLHRLCEANRAYAHYRW 237

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106466|ref|XP_001649336.1| mitochondrial ribosomal protein S7 [Aedes aegypti] gi|108879856|gb|EAT44081.1| AAEL004527-PA [Aedes aegypti]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 141/206 (68%)

Query: 20  AVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFIN 79
           A   + +GPQF++P+FK E +  +  + E+     VPVK   +  +CS F++ +  KF N
Sbjct: 21  AATMSQYGPQFVEPVFKKETLTAMEESGEISKIAHVPVKAARNNDSCSVFHDDLVSKFTN 80

Query: 80  YMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPI 139
           Y+MKKG K LARE+ E   ++IKR+Q+E+Y+ A S+EE+  I L+P  ++ KA+EN++P+
Sbjct: 81  YVMKKGEKVLARELVEKGFENIKRLQLERYHLAESEEEKAKIELNPRALLRKAVENSRPL 140

Query: 140 LKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNK 199
           L+L  IKR  V YQVP+PI+++ + F  MKW +E  ++K   V F + +A  ++D A N+
Sbjct: 141 LQLTPIKRGGVRYQVPVPITEQRSYFLAMKWLLEAIREKERTVHFPEKMAWEVLDAAANQ 200

Query: 200 GKVVKKKTDLHRQCEANRAYAHYYFG 225
           GKV+K+K +LHRQCEANRAYAHY + 
Sbjct: 201 GKVIKRKQELHRQCEANRAYAHYRWS 226

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465901|gb|AEO32795.1| hypothetical protein [Amblyomma maculatum]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 140/213 (65%), Gaps = 1/213 (0%)

Query: 13  LHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNP 72
           L  ++ T VR++ +   ++DPI     ++ + A+ E ++   VPVK   S  T S FY+ 
Sbjct: 46  LCSVYTTPVRTSIYSKMYVDPIPDKTKLEELKASGEAEHLRFVPVKATPSDVTTSVFYDA 105

Query: 73  VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
              KFIN +M+KG K LARE  E  + ++KRIQ+ KYN+AT DEER  I  +P  I+ KA
Sbjct: 106 TLHKFINLLMRKGEKALARENIELALFNVKRIQLAKYNRAT-DEERSQIECNPLTILHKA 164

Query: 133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQIL 192
           +EN +P+++L  IKR  +TYQVP+PI+   +RF  MKW I+   DK  +VRF D LA+ L
Sbjct: 165 LENCRPVMELSPIKRGGITYQVPVPITQNRSRFLSMKWMIDAVNDKDQKVRFYDQLAKEL 224

Query: 193 IDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG 225
           +D   N+G+VVKKK +LH+QCEAN+AYAHY + 
Sbjct: 225 LDAYKNQGRVVKKKHELHKQCEANKAYAHYRWS 257

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792631|gb|JAA61767.1| Putative ribosomal protein s7, partial [Rhipicephalus pulchellus]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 142/213 (66%)

Query: 13  LHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNP 72
           L  +F T VR++ +    ++P    + ++ I A+ E+++Y  VPVK   S  + S FY+ 
Sbjct: 24  LCPVFATQVRTSVYDKNHVEPFVDKKKLEEIEASGEVEDYKFVPVKAAPSHVSTSLFYDA 83

Query: 73  VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
             +KFIN +M+KG+K LARE  E  + ++KRIQ+ KYN+AT D+ +  +  +P  I+ KA
Sbjct: 84  TLDKFINMLMRKGDKALARENIELGLFNVKRIQLTKYNRATDDDTKRKVECNPVTILHKA 143

Query: 133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQIL 192
           + N +P+L+L  IKR  +TYQVP+P+++  ARF  MKW I+   DK  +V F D LA+ L
Sbjct: 144 LANCRPVLELSPIKRGGITYQVPVPMTENRARFLSMKWMIDAVNDKDPKVAFCDQLAKEL 203

Query: 193 IDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG 225
           +D  +N+G+VVKKK +LH+QCEAN+AYAHY + 
Sbjct: 204 LDAYNNQGRVVKKKHELHKQCEANKAYAHYRWS 236

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375662|gb|AEE62972.1| unknown [Dendroctonus ponderosae]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/221 (42%), Positives = 144/221 (65%), Gaps = 11/221 (4%)

Query: 15  HIFKTAVRSASFG---------PQF-IDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQ 64
            +FK  +++ S G         P F IDPIF+ E    ++ + E+  Y  +P KP  + Q
Sbjct: 12  QLFKWNIQAISAGIFQNGMAIYPSFYIDPIFRKEVQQELVQSGEIDQYAHLPTKPAANNQ 71

Query: 65  TCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILD 124
           TCS  ++P    F NY+M+ G K  AR++ E +++ +KRIQ+EK++K TS+E++  I LD
Sbjct: 72  TCSLTFDPDISLFTNYLMRDGRKNFARQLVEKSLEQVKRIQLEKFHKCTSEEDKAKIELD 131

Query: 125 PYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSE-VR 183
           P VI  +A+ N+ P+L+L  +KR  V YQVP+P+S   +RF  MKW IE +++K  + VR
Sbjct: 132 PKVIFHRAVTNSMPLLQLMPVKRGGVKYQVPVPVSHHRSRFLGMKWLIEASREKDKKTVR 191

Query: 184 FSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           F   LA+ L+D ++N G+V+++K DLHRQCEAN+AYAHY +
Sbjct: 192 FWTQLARELVDASNNSGRVIRRKQDLHRQCEANKAYAHYRW 232

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722099|ref|XP_003399447.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 1 [Bombus terrestris]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 145/212 (68%), Gaps = 2/212 (0%)

Query: 12  SLHHIFKTAVRSAS-FGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFY 70
           SL    +  V+  S F P +I PI+K ++ + I      K  T +P+KP  + +TCS F+
Sbjct: 14  SLRRNLENGVQFYSVFPPTYIKPIYKKDEQEIIFNETVDKKLTHIPIKPAYTSETCSEFH 73

Query: 71  NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
           + +  KF NY+M++G K+LAR + + T ++IK I++++Y  +   E RE+IILDP +I+ 
Sbjct: 74  DNLVRKFTNYIMRQGKKQLARRLLDETFENIKIIKLDEYYNSPP-EHRENIILDPKIILY 132

Query: 131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQ 190
           +A+EN  PIL+LR I R  ++YQVP+P+++  ARF  M W I+ A+DK +  +F D LA+
Sbjct: 133 QAVENCTPILELRKIYRGGISYQVPVPMNENRARFLSMNWLIKCAQDKGNAEKFPDVLAK 192

Query: 191 ILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
            +ID A+NKG+V+KKK DLH+QCEANRAYAHY
Sbjct: 193 EIIDAANNKGRVIKKKHDLHKQCEANRAYAHY 224

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722101|ref|XP_003399448.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 2 [Bombus terrestris]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 139/197 (70%), Gaps = 1/197 (0%)

Query: 26  FGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEKFINYMMKKG 85
           F P +I PI+K ++ + I      K  T +P+KP  + +TCS F++ +  KF NY+M++G
Sbjct: 18  FPPTYIKPIYKKDEQEIIFNETVDKKLTHIPIKPAYTSETCSEFHDNLVRKFTNYIMRQG 77

Query: 86  NKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSI 145
            K+LAR + + T ++IK I++++Y  +   E RE+IILDP +I+ +A+EN  PIL+LR I
Sbjct: 78  KKQLARRLLDETFENIKIIKLDEYYNSPP-EHRENIILDPKIILYQAVENCTPILELRKI 136

Query: 146 KRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKK 205
            R  ++YQVP+P+++  ARF  M W I+ A+DK +  +F D LA+ +ID A+NKG+V+KK
Sbjct: 137 YRGGISYQVPVPMNENRARFLSMNWLIKCAQDKGNAEKFPDVLAKEIIDAANNKGRVIKK 196

Query: 206 KTDLHRQCEANRAYAHY 222
           K DLH+QCEANRAYAHY
Sbjct: 197 KHDLHKQCEANRAYAHY 213

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
FB|FBgn0032236	218	mRpS7 "mitochondrial ribosomal	0.884	0.912	0.393	3.9e-37
ZFIN|ZDB-GENE-050809-112	228	mrps7 "mitochondrial ribosomal	0.893	0.881	0.399	3.1e-35
UNIPROTKB|Q6DDY9	233	mrps7 "28S ribosomal protein S	0.893	0.862	0.408	5.1e-35
UNIPROTKB|Q5ZMU0	233	MRPS7 "28S ribosomal protein S	0.897	0.866	0.396	1.1e-34
UNIPROTKB|Q3T040	242	MRPS7 "28S ribosomal protein S	0.897	0.834	0.386	1.2e-33
UNIPROTKB|E2RFN7	242	MRPS7 "Uncharacterized protein	0.897	0.834	0.391	1.2e-33
RGD|1309164	242	Mrps7 "mitochondrial ribosomal	0.897	0.834	0.377	1.5e-33
MGI|MGI:1354367	242	Mrps7 "mitchondrial ribosomal	0.902	0.838	0.374	2.5e-33
UNIPROTKB|F1RVX4	242	MRPS7 "Uncharacterized protein	0.902	0.838	0.388	6.7e-33
UNIPROTKB|J3QLS3	271	MRPS7 "28S ribosomal protein S	0.893	0.741	0.380	1.6e-31

FB|FBgn0032236 mRpS7 "mitochondrial ribosomal protein S7" [Drosophila melanogaster (taxid:7227)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 81/206 (39%), Positives = 129/206 (62%)

Query:    19 TAVRSASFGP-QFIDPIF-KHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYNPVKEK 76
             + +R  S  P  +++PI  K++ +++    N+L     VP+K   +  + + F++  K K
Sbjct:    15 SCLRLMSVYPTHYVEPIVQKYKQLEQ---KNDLSKLYHVPIKAAVNKSSDTIFHDDTKHK 71

Query:    77 FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
              INY+ KKGN  LAR +   T++ IKR Q E  N A    E+ +I  +P  ++ +A+EN 
Sbjct:    72 MINYITKKGNSALARTLLSKTLELIKRTQTEHMNLAKG--EKTTINTNPETLLKQAVENC 129

Query:   137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
             +P+L++ +IKR  VTYQVP+PI+ K + F  MKW +E A++K  +V   + LA  ++D A
Sbjct:   130 RPLLQVTAIKRGGVTYQVPVPITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAA 189

Query:   197 DNKGKVVKKKTDLHRQCEANRAYAHY 222
               +G+V+K+K DLHR CE+NRAYAHY
Sbjct:   190 HGQGRVIKRKDDLHRLCESNRAYAHY 215

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-050809-112 mrps7 "mitochondrial ribosomal protein S7" [Danio rerio (taxid:7955)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 83/208 (39%), Positives = 123/208 (59%)

Query:    21 VRSASFGPQFIDPIFKHE----DIDRIIANNELKNYTDV-PVKPPTSFQTCSTFYNPVKE 75
             +R + + P ++DP  + +    D +      EL+    V P+K   +  T S F +P+  
Sbjct:    19 MRWSRYNPYYLDPEPRKDAPVSDSELSPEQKELQELKTVRPIKAALTGDTSSAFSDPLIS 78

Query:    76 KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
             KFIN MM  GNK LAR +   T+++IKR Q+EKY+K+ +  +RE I  +PY I  +A+EN
Sbjct:    79 KFINMMMYDGNKVLARGIMTQTLETIKRKQVEKYHKSPA-AKREEIECNPYAIFHQAMEN 137

Query:   136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQILID 194
              KP++ L SI++    YQVP+P++D   RF  MKW I E   +K       + L+Q L+ 
Sbjct:   138 CKPVIGLASIQKGGKFYQVPVPLTDNRRRFMAMKWMITECRTNKQGRTLMYEKLSQELLA 197

Query:   195 GADNKGKVVKKKTDLHRQCEANRAYAHY 222
                N+G V+K+K DLH+  EANRAYAHY
Sbjct:   198 AFANEGNVIKRKHDLHKMAEANRAYAHY 225

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q6DDY9 mrps7 "28S ribosomal protein S7, mitochondrial" [Xenopus laevis (taxid:8355)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 87/213 (40%), Positives = 123/213 (57%)

Query:    19 TAVRSASFGPQFIDP-----IFKH--EDI-DRIIANNELKNYTDVPVKPPTSFQTCSTFY 70
             T VR + + PQ++DP     ++    E++ ++     ELK     P+K   S  T S F 
Sbjct:    21 TQVRWSRYSPQYLDPETDKQVYSRPLEELSEQERTERELKIVR--PIKAAPSNVTSSVFS 78

Query:    71 NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
             +P   KF N MMK GNK L+R +   T++ IKR Q+EKY KA  +EER SI  +PY I  
Sbjct:    79 DPTISKFTNMMMKGGNKNLSRSIMNQTLEQIKRTQLEKYYKAP-EEERASIECNPYTIFH 137

Query:   131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD-KPSEVRFSDNLA 189
             +A+ N +PI+ L SI R   +YQVP P+ +   RF  MKW I   +D K       + L+
Sbjct:   138 QALHNCQPIIGLTSILRGGKSYQVPTPLKENRRRFLAMKWLITECRDNKHRRTLMYEKLS 197

Query:   190 QILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
             Q L+D    +G+VVKKK +LH+  EANRA+AH+
Sbjct:   198 QALLDAYQMQGEVVKKKHELHKMAEANRAFAHF 230

GO:0003723 "RNA binding" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q5ZMU0 MRPS7 "28S ribosomal protein S7, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 84/212 (39%), Positives = 126/212 (59%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRII--ANNELKNYTDV----PVKP-PTSFQTCSTFYN 71
             T VR + + P F++P    E   +     + E K   ++    P+K  P S  + S F +
Sbjct:    21 TQVRWSRYNPSFLEPEVNKELYQKPFNELSEEEKEKQELKAVHPIKAAPPSISS-SVFSD 79

Query:    72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDK 131
             P+  KF N MMK GNK LAR +   T+++IKR Q+EKY++A  D+E+E +  +PYVI  +
Sbjct:    80 PMISKFTNMMMKDGNKVLARSLMAQTLENIKRKQLEKYHRAP-DDEKERVECNPYVIFHQ 138

Query:   132 AIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQ 190
             A++N +PI+ L +I R   TYQVP+P+ D   RF  MKW I E  ++K       + L++
Sbjct:   139 ALKNCQPIIGLSNITRGGKTYQVPVPLKDNRKRFLAMKWLITECRENKHRRTLMPEKLSE 198

Query:   191 ILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
              LI   +N+G ++KKK  LH+  EANRAYAH+
Sbjct:   199 ELIQAFNNEGPIIKKKHVLHKMAEANRAYAHF 230

GO:0005739 "mitochondrion" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q3T040 MRPS7 "28S ribosomal protein S7, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 82/212 (38%), Positives = 126/212 (59%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRIIAN-NELKNY------TDVPVKPPTSFQTCSTFYN 71
             T VR + +GP++ DP    E   + +A   E + Y      T V +K   + +T S F +
Sbjct:    30 TQVRWSRYGPEYQDPQIDKEYYRKPLAQLTEEETYERELRKTQV-IKAAPATKTSSVFED 88

Query:    72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDK 131
             PV  KF N MMK GNK LAR +   T++++KR Q EKY+ A S EE+ ++  +PY I  +
Sbjct:    89 PVISKFTNMMMKGGNKILARSLMTQTLEAVKRKQFEKYH-AASAEEQATVERNPYTIFHQ 147

Query:   132 AIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQ 190
             A++N +P++ L  I +    YQVP+P++++  RF  MKW I E  + KP  +   + L+Q
Sbjct:   148 ALKNCEPVIGLVPILKGGHFYQVPVPLAERRRRFLAMKWMITECREKKPRRMLMPEKLSQ 207

Query:   191 ILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
              L++   N+G V+K+K D+H+  EANRA AHY
Sbjct:   208 ELLEAFCNRGPVIKRKHDMHKMAEANRALAHY 239

GO:0006412 "translation" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RFN7 MRPS7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 83/212 (39%), Positives = 126/212 (59%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRIIAN-NELKNY------TDVPVKPPTSFQTCSTFYN 71
             T VR + +GP++ DP    E   + +A   E + Y      T + +K   + +T S F +
Sbjct:    30 TQVRWSRYGPEYKDPRIDKEYYRKPLAELTEEEKYEQELRKTQL-IKAAPAAKTSSVFED 88

Query:    72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDK 131
             PV  KF N MMK GNK LAR +   T++++KR Q EKY+ A S EE+ +I  +PYVI  +
Sbjct:    89 PVISKFTNMMMKGGNKVLARSLMMQTLEAVKRKQFEKYH-AASAEEQATIERNPYVIFHQ 147

Query:   132 AIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLAQ 190
             A++N +P++ L  I R    YQVP+P++D+  RF  MKW I+  ++K    +   + L+ 
Sbjct:   148 ALQNCEPVIGLVPILRGGHFYQVPVPLADRRRRFLAMKWMIKECREKKHRRMLMPEKLSH 207

Query:   191 ILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
              L++   N+G V+KKK D+H+  EANRA AHY
Sbjct:   208 ELLEAFHNQGPVIKKKHDMHKMAEANRALAHY 239

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1309164 Mrps7 "mitochondrial ribosomal protein S7" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 80/212 (37%), Positives = 125/212 (58%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRIIAN-NELKNYTDVP------VKPPTSFQTCSTFYN 71
             T VR + + P+F DP+   E   + ++   E + Y D+       +K   + +T S F +
Sbjct:    30 TQVRWSRYAPEFRDPLIDKEHYRKQVSELTEEEKY-DLELKKTQLIKAAAATETSSVFAD 88

Query:    72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDK 131
             PV  KF N MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  +
Sbjct:    89 PVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYKIFHE 147

Query:   132 AIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQ 190
             A+ N +P++ L  I +    YQVP+P++D+  RF  MKW I E  ++KP  +   + L+ 
Sbjct:   148 ALRNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRMLMPEKLSH 207

Query:   191 ILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
              L++   N+G V+K+K ++H+  EANRA AHY
Sbjct:   208 ELLEAFHNRGPVIKRKHNMHKMAEANRALAHY 239

GO:0003723 "RNA binding" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

MGI|MGI:1354367 Mrps7 "mitchondrial ribosomal protein S7" [Mus musculus (taxid:10090)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 79/211 (37%), Positives = 123/211 (58%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRIIAN-NELKNYTDVP-----VKPPTSFQTCSTFYNP 72
             T VR + + P+F +P+   E   + +A   E + Y         +K   + +T S F +P
Sbjct:    30 TQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKKTQFIKAAAATETSSVFADP 89

Query:    73 VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
             V  KF N MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  +A
Sbjct:    90 VISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYRIFHEA 148

Query:   133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQI 191
             ++N +P++ L  I +    YQVP+P++D+  RF  MKW I E  ++KP      + L+  
Sbjct:   149 LKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHE 208

Query:   192 LIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
             L++   N+G V+K+K ++H+  EANRA AHY
Sbjct:   209 LLEAFHNRGPVIKRKHNMHKMAEANRALAHY 239

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1RVX4 MRPS7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/211 (38%), Positives = 123/211 (58%)

Query:    19 TAVRSASFGPQFIDPIFKHEDIDRIIANN-ELKNYT-DVP----VKPPTSFQTCSTFYNP 72
             T VR + +GP++ DP    E   + +A   E + Y  D      +K   + +T S F +P
Sbjct:    30 TQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFKKTQLIKAAPATKTSSVFEDP 89

Query:    73 VKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 132
             V  KF N MMK GNK LAR +   T++++KR Q  KY+ A S EE+ +I  +PY I  +A
Sbjct:    90 VISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYH-AASAEEQATIERNPYTIFHQA 148

Query:   133 IENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHI-EIAKDKPSEVRFSDNLAQI 191
             ++N +P++ L  I +    YQVP+P++D+  RF  MKW I E  + K   V   + L+Q 
Sbjct:   149 LKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAECREKKHRRVLMPEKLSQE 208

Query:   192 LIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
             L++   N+G V+K+K D+H+  EANRA AHY
Sbjct:   209 LLEAFHNQGPVIKRKHDMHKMAEANRALAHY 239

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J3QLS3 MRPS7 "28S ribosomal protein S7, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 81/213 (38%), Positives = 122/213 (57%)

Query:    19 TAVRSASFGPQFIDPIFKHE----DIDRIIANN----ELKNYTDVPVKPPTSFQTCSTFY 70
             T VR + + P+F DP+   E     ++ +        ELK  T + +K   + +T S F 
Sbjct:    59 TQVRWSRYSPEFKDPLIDKEYYRKPVEELTEEEKYVRELKK-TQL-IKAAPAGKTSSVFE 116

Query:    71 NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
             +PV  KF N MM  GNK LAR +   T++++KR Q EKY+ A S EE+ +I  +PY I  
Sbjct:   117 DPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYH-AASAEEQATIERNPYTIFH 175

Query:   131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSE-VRFSDNLA 189
             +A++N +P++ L  I +    YQVP+P+ D+  RF  MKW I   +DK  +     + L+
Sbjct:   176 QALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLS 235

Query:   190 QILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
               L++   N+G V+K+K DLH+  EANRA AHY
Sbjct:   236 HKLLEAFHNQGPVIKRKHDLHKMAEANRALAHY 268

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3KLR2	RS7_CHLTA	No assigned EC number	0.3291	0.6222	0.8917	yes	N/A
P0CE06	RS7_CHLTR	No assigned EC number	0.3291	0.6222	0.8917	yes	N/A
Q9PJV5	RS7_CHLMU	No assigned EC number	0.3354	0.6222	0.8917	yes	N/A
A5ELN1	RS7_BRASB	No assigned EC number	0.3076	0.6177	0.8910	yes	N/A
A5FZW8	RS7_ACICJ	No assigned EC number	0.3076	0.6266	0.8924	yes	N/A
A7ZCP1	RS7_CAMC1	No assigned EC number	0.3333	0.6222	0.8974	yes	N/A
Q7MH41	RS7_VIBVY	No assigned EC number	0.3076	0.6177	0.8910	yes	N/A
Q5I0K8	RT07_RAT	No assigned EC number	0.3661	0.9111	0.8471	yes	N/A
C5BQ42	RS7_TERTT	No assigned EC number	0.3269	0.6177	0.8910	yes	N/A
Q498Z6	RT07_DANRE	No assigned EC number	0.3822	0.9422	0.9298	yes	N/A
Q8DCQ9	RS7_VIBVU	No assigned EC number	0.3076	0.6177	0.8910	yes	N/A
Q6MJ12	RS7_BDEBA	No assigned EC number	0.3037	0.6222	0.8917	yes	N/A
Q3T040	RT07_BOVIN	No assigned EC number	0.3767	0.9022	0.8388	yes	N/A
Q2N9A6	RS7_ERYLH	No assigned EC number	0.3141	0.6177	0.8910	yes	N/A
Q5ZMU0	RT07_CHICK	No assigned EC number	0.3755	0.9111	0.8798	yes	N/A
A8G1F2	RS7_SHESH	No assigned EC number	0.3333	0.6177	0.8910	yes	N/A
Q9Y2R9	RT07_HUMAN	No assigned EC number	0.3720	0.9022	0.8388	yes	N/A
Q21M90	RS7_SACD2	No assigned EC number	0.3269	0.6177	0.8910	yes	N/A
Q80X85	RT07_MOUSE	No assigned EC number	0.3720	0.9022	0.8388	yes	N/A
B0B810	RS7_CHLT2	No assigned EC number	0.3354	0.6222	0.8917	yes	N/A
Q6MER7	RS7_PARUW	No assigned EC number	0.3589	0.6222	0.8917	yes	N/A
Q9VKX4	RT07_DROME	No assigned EC number	0.3875	0.8977	0.9266	yes	N/A
B0BC75	RS7_CHLTB	No assigned EC number	0.3354	0.6222	0.8917	yes	N/A
Q9Z801	RS7_CHLPN	No assigned EC number	0.3274	0.6533	0.9363	yes	N/A
Q95Q11	RT07_CAEEL	No assigned EC number	0.3571	0.9066	0.9189	yes	N/A
Q1RHC2	RS7_RICBR	No assigned EC number	0.3441	0.6044	0.8343	yes	N/A
Q2W2I7	RS7_MAGSA	No assigned EC number	0.3227	0.6266	0.9038	yes	N/A
Q6FZB8	RS7_BARQU	No assigned EC number	0.3205	0.6177	0.8910	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
pfam00177	149	pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e	4e-30
PRK05302	156	PRK05302, PRK05302, 30S ribosomal protein S7; Vali	7e-28
TIGR01029	154	TIGR01029, rpsG_bact, ribosomal protein S7, bacter	1e-23
COG0049	148	COG0049, RpsG, Ribosomal protein S7 [Translation,	4e-22
CHL00053	155	CHL00053, rps7, ribosomal protein S7	9e-21

>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e

 Score =  108 bits (273), Expect = 4e-30
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 17/151 (11%)

Query: 67  STFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPY 126
             + + + EK IN +MK G K LA ++    ++ I+    EK  K            +P 
Sbjct: 16  PKYNSALVEKLINKLMKDGKKSLAEKIVYDALEIIE----EKTGK------------NPL 59

Query: 127 VIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSD 186
            ++ +AIEN KP ++++S +    TYQVP+ +S +      ++W +E A+ + S    ++
Sbjct: 60  EVLVQAIENVKPRVEVKSRRVGGATYQVPVEVSPERRVALAIRWILEAARKR-SGKSMAE 118

Query: 187 NLAQILIDGADNKGKVVKKKTDLHRQCEANR 217
            LA  LID A+NKG  +KKK + H+  EANR
Sbjct: 119 KLANELIDAANNKGSAIKKKEETHKMAEANR 149

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Length = 149

>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated

 Score =  102 bits (258), Expect = 7e-28
 Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 17/149 (11%)

Query: 76  KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
           KFIN +M  G K +A ++  Y   ++  I+ EK  K            DP  + +KA+EN
Sbjct: 25  KFINKLMLDGKKSVAEKIV-Y--GALDIIE-EKTGK------------DPLEVFEKALEN 68

Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDG 195
            KP+++++S +    TYQVP+ +  +  +   M+W +E A+ +  E   ++ LA  L+D 
Sbjct: 69  VKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKR-GEKTMAERLANELLDA 127

Query: 196 ADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A+N+G  VKK+ D HR  EAN+A+AHY +
Sbjct: 128 ANNRGAAVKKREDTHRMAEANKAFAHYRW 156

Length = 156

>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle

 Score = 92.0 bits (229), Expect = 1e-23
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 17/148 (11%)

Query: 75  EKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIE 134
            KFIN +MK G K LA  +     + I     +K  +            DP  + ++A+E
Sbjct: 22  NKFINRVMKDGKKSLAESIVYKAFERIA----KKTGE------------DPLEVFEQALE 65

Query: 135 NTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILID 194
           N KP+++++S +    TYQVP+ +         ++W IE A  K      ++ LA  ++D
Sbjct: 66  NVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAA-RKRGGKSMAERLANEILD 124

Query: 195 GADNKGKVVKKKTDLHRQCEANRAYAHY 222
            A+N G  +KK+ D HR  EAN+A+AHY
Sbjct: 125 AANNTGAAIKKREDTHRMAEANKAFAHY 152

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 154

>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

 Score = 88.0 bits (219), Expect = 4e-22
 Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 17/147 (11%)

Query: 71  NPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIID 130
           + + E+ IN +M+ G K LA ++       I+    +K  +            +P  + +
Sbjct: 19  SVIVERLINKIMRDGKKSLAEKIVYGAFDIIE----KKTGQ------------NPLQVFE 62

Query: 131 KAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQ 190
           KAIEN KP  +++S +    TYQVP+ +  +      ++W +E A+ + +E   ++ LA 
Sbjct: 63  KAIENVKPREEVKSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKR-NEKTMAERLAN 121

Query: 191 ILIDGADNKGKVVKKKTDLHRQCEANR 217
            LID A+N G  +KKK D HR  EANR
Sbjct: 122 ELIDAANNTGAAIKKKEDTHRMAEANR 148

Length = 148

>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7

 Score = 84.6 bits (210), Expect = 9e-21
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 17/145 (11%)

Query: 78  INYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTK 137
           +N ++K G K LA  +    +K I+    +K  K            +P  ++ +AI N  
Sbjct: 27  VNRILKSGKKSLAYRIVYRALKKIQ----QKTEK------------NPLSVLRQAIRNVT 70

Query: 138 PILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGAD 197
           P +++++ +    TYQVPI I     +   ++W ++ ++ +      +  L+  L+D A 
Sbjct: 71  PDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGR-NMAFKLSSELVDAAK 129

Query: 198 NKGKVVKKKTDLHRQCEANRAYAHY 222
             G  ++KK + HR  EANRA+AH+
Sbjct: 130 GSGNAIRKKEETHRMAEANRAFAHF 154

Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
TIGR01029	154	rpsG_bact ribosomal protein S7, bacterial/organell	100.0
PRK05302	156	30S ribosomal protein S7; Validated	100.0
CHL00053	155	rps7 ribosomal protein S7	100.0
COG0049	148	RpsG Ribosomal protein S7 [Translation, ribosomal	100.0
TIGR01028	186	S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary	100.0
PRK04027	195	30S ribosomal protein S7P; Reviewed	100.0
PTZ00091	193	40S ribosomal protein S5; Provisional	100.0
KOG3291|consensus	208		100.0
PF00177	148	Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro:	100.0

>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle

Probab=100.00  E-value=7.6e-54  Score=355.45  Aligned_cols=144  Identities=32%  Similarity=0.562  Sum_probs=140.4

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|.|++|++|||+||++|||++|++||+++|++|+..                ++.||+++|++||+||+|+++|+
T Consensus        11 ~~d~~y~~~lv~~lin~lM~~GKK~~A~kI~~~al~~i~~~----------------~~~nPi~vl~~Ai~nv~P~~evk   74 (154)
T TIGR01029        11 PPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKK----------------TGEDPLEVFEQALENVKPLVEVK   74 (154)
T ss_pred             CCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHhCCCCeeeE
Confidence            45999999999999999999999999999999999999987                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|++.||+++||+||+++|++++ ..+|+++||+||++|++|+|.+++||+|+||||++||||+|||
T Consensus        75 ~~r~gG~~yqvP~~v~~~rr~~lAirWil~~a~~r~-~~~~~~~La~Eii~A~~~~g~aikkKee~hk~AeaNRaf~h~R  153 (154)
T TIGR01029        75 SRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRG-GKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR  153 (154)
T ss_pred             EeecCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCceeeHHHHHHHHHHHhHhHhccc
Confidence            999999999999999999999999999999999986 5699999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       154 w  154 (154)
T TIGR01029       154 W  154 (154)
T ss_pred             C
Confidence            8

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.

>PRK05302 30S ribosomal protein S7; Validated

Probab=100.00  E-value=1.1e-53  Score=355.11  Aligned_cols=144  Identities=33%  Similarity=0.576  Sum_probs=140.5

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+||+|++|||+||++|||++|++||+++|++|+..                +++||++||++||+||+|+++|+
T Consensus        13 ~~d~~~~~~lv~~lin~lmk~GKK~~A~kI~~~al~~I~~~----------------~~~npl~il~~Ai~nv~P~~evk   76 (156)
T PRK05302         13 LPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEK----------------TGKDPLEVFEKALENVKPVVEVK   76 (156)
T ss_pred             CCCCCcCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH----------------cCCChHHHHHHHHHhCCCCeEEe
Confidence            46999999999999999999999999999999999999988                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||+||++.||+++||+||+++|++|+ ..+|+++||+||++|++|+|.++++|+|+||+|++||||+|||
T Consensus        77 ~~r~gG~~~~vP~~i~~~rr~~lAirwil~~a~~r~-~~~~~~~La~Eii~A~~~~g~aikkK~e~hk~A~aNRa~ah~R  155 (156)
T PRK05302         77 SRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRG-EKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYR  155 (156)
T ss_pred             eeccCCEEEEEeEEeCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCeeehHHHHHHHHHHhhhHhhcC
Confidence            999999999999999999999999999999999976 5699999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       156 ~  156 (156)
T PRK05302        156 W  156 (156)
T ss_pred             C
Confidence            8

>CHL00053 rps7 ribosomal protein S7

Probab=100.00  E-value=3.6e-51  Score=339.66  Aligned_cols=143  Identities=27%  Similarity=0.506  Sum_probs=139.1

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||.|.|++|++|||+||++|||++|++||+++|++|+..                ++.||+++|++||+||+|+++++
T Consensus        13 ~~d~~~~~~lv~~lin~lm~~GKK~~A~kIv~~al~~i~~~----------------~~~npi~vl~~Ai~N~~P~~evk   76 (155)
T CHL00053         13 KPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQK----------------TEKNPLSVLRQAIRNVTPDVEVK   76 (155)
T ss_pred             CCCCCcCcHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHhCCCcEEEE
Confidence            56999999999999999999999999999999999999987                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||++||||+||++.||+++||+||+++|++++ ..+|+++||+||++|++|+|.+++||+|+||+|++||||+|||
T Consensus        77 ~~r~gG~~~qvPv~v~~~rr~~lAirWil~~ar~r~-~~~~~~~La~Eii~A~~~~g~aikkK~e~hk~A~aNRa~~h~r  155 (155)
T CHL00053         77 ARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRS-GRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR  155 (155)
T ss_pred             EEeeCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhHhHhccC
Confidence            999999999999999999999999999999999986 4589999999999999999999999999999999999999998

>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-48  Score=319.98  Aligned_cols=138  Identities=33%  Similarity=0.522  Sum_probs=134.5

Q ss_pred             CCCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeE
Q psy4237          63 FQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL  142 (225)
Q Consensus        63 ~~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l  142 (225)
                      ..+||+|.+++|++|||.||++|||++|++||+.||++|..+                |++||+++|++||+|++|.+++
T Consensus        11 ~~~dpk~~~~iv~rliN~iM~~GKK~~A~~Ivy~Af~ii~~k----------------Tg~~Piqvf~~Ai~N~~P~~Ev   74 (148)
T COG0049          11 VLPDPKYNSVIVERLINKIMRDGKKSLAEKIVYGAFDIIEKK----------------TGQNPLQVFEKAIENVKPREEV   74 (148)
T ss_pred             CCCCcccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----------------HCCChHHHHHHHHHhcCchhhe
Confidence            357999999999999999999999999999999999999998                8999999999999999999999


Q ss_pred             EEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237         143 RSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       143 ~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR  217 (225)
                      +++++||.+|||||+++|.||..|||+||+++|+++. +++|.++||+|||||++|+|.+||||+|+||||+|||
T Consensus        75 ~srrvGGa~yqvpVeV~p~RR~~lAlrwi~~~Ar~r~-~ktm~erLA~Eli~Aan~~g~AikKked~hRmAeAnr  148 (148)
T COG0049          75 KSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKRN-EKTMAERLANELIDAANNTGAAIKKKEDTHRMAEANR  148 (148)
T ss_pred             eeeeeCCeeeEecCccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999984 7799999999999999999999999999999999997

>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic)

Probab=100.00  E-value=9.5e-48  Score=326.98  Aligned_cols=154  Identities=21%  Similarity=0.268  Sum_probs=147.0

Q ss_pred             cccCCCCccCCCCCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q psy4237          47 NELKNYTDVPVKPPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATS  114 (225)
Q Consensus        47 ~d~~~~~~~~ik~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~  114 (225)
                      .|++|..|+.++|...++|++.+        .+++|++|||+||++    |||++|++||++||++|+..          
T Consensus        16 ~d~~l~~yi~~~~~~~pht~gr~~~k~f~k~~~~iV~rliN~lM~~g~n~GKK~~A~kIv~~A~~iI~~~----------   85 (186)
T TIGR01028        16 KDPSLKDYINLEPKYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKR----------   85 (186)
T ss_pred             cCCCHHhhhhcCceeccchhhhhhccccCcccCHHHHHHHHHHhccCcCCCcHHHHHHHHHHHHHHHHHH----------
Confidence            69999999999999999998877        459999999999997    99999999999999999998          


Q ss_pred             chhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHH
Q psy4237         115 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQI  191 (225)
Q Consensus       115 ~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~La~E  191 (225)
                            +++||++||++||+||+|+++++++++||.+||||+++++.||.++||+||+++|++   |+ .++|+++||+|
T Consensus        86 ------t~~nPi~vl~~AI~N~~P~~ev~~~r~GG~~yqVPv~v~p~Rr~~lAirWI~~~ar~~~~R~-~k~m~~~LA~E  158 (186)
T TIGR01028        86 ------TGENPIQVLVDAIENAGPREDTTRIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRN-KKSIAECLAEE  158 (186)
T ss_pred             ------hCCChHHHHHHHHHcCCCCeEEEEEecCCEEEEeccccCHHHHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHH
Confidence                  799999999999999999999999999999999999999999999999999999998   44 67999999999


Q ss_pred             HHHHHcCC--CchhhhhHHHHHHHHHhc
Q psy4237         192 LIDGADNK--GKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       192 Ii~A~~n~--G~aikKK~elHK~AeaNR  217 (225)
                      |++|++|+  |.+|+||+|+||||+|||
T Consensus       159 ii~A~~~~g~g~AikKKeE~hr~AeaNR  186 (186)
T TIGR01028       159 IILAANGDSKSYAIKKKEELERVAKSAR  186 (186)
T ss_pred             HHHHHhCCCCCceeehHHHHHHHHHhcC
Confidence            99999998  579999999999999998

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.

>PRK04027 30S ribosomal protein S7P; Reviewed

Probab=100.00  E-value=2.1e-47  Score=326.38  Aligned_cols=155  Identities=22%  Similarity=0.328  Sum_probs=148.5

Q ss_pred             cccCCCCccCCCCCCCCCCCCCcc--------chHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q psy4237          47 NELKNYTDVPVKPPTSFQTCSTFY--------NPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATS  114 (225)
Q Consensus        47 ~d~~~~~~~~ik~a~~~~t~~~~~--------d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~  114 (225)
                      .|++|..|+.++|...++|.+.+.        +++|++|||.||++    |||++|++||+.||++|+.+          
T Consensus        25 ~d~~l~~yi~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~~~n~GKK~~A~~Iv~~AfeiI~~k----------   94 (195)
T PRK04027         25 RDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKR----------   94 (195)
T ss_pred             cccchHhheeecceecCcccccccccCcccccCHHHHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHHH----------
Confidence            799999999999999999999884        49999999999999    99999999999999999998          


Q ss_pred             chhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q psy4237         115 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQIL  192 (225)
Q Consensus       115 ~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~--~~~~~~e~La~EI  192 (225)
                            +++||++||++||+|++|.++++++++||.+|||||++++.||+++||+||+++|+++.  +.++|+++||+||
T Consensus        95 ------T~~nPiqVl~~AI~N~~P~~Ev~~~r~GG~tyqvpVdV~p~Rr~~lAirwI~~~ar~r~fr~~ksm~e~LA~El  168 (195)
T PRK04027         95 ------TKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEI  168 (195)
T ss_pred             ------HCCCHHHHHHHHHHcCCCCeEEEEEecCCEEEEeeeecCHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHH
Confidence                  79999999999999999999999999999999999999999999999999999999853  5679999999999


Q ss_pred             HHHHcC--CCchhhhhHHHHHHHHHhc
Q psy4237         193 IDGADN--KGKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       193 i~A~~n--~G~aikKK~elHK~AeaNR  217 (225)
                      ++|++|  +|.+|+||+|+||||+|||
T Consensus       169 idAa~~~~~g~AikKKeE~hRmAeANr  195 (195)
T PRK04027        169 IAAANNDPKSYAVRKKEEIERVAKSAR  195 (195)
T ss_pred             HHHHcCCCCCceeecHHHHHHHHHhcC
Confidence            999999  5899999999999999998

>PTZ00091 40S ribosomal protein S5; Provisional

Probab=100.00  E-value=3e-46  Score=318.73  Aligned_cols=154  Identities=19%  Similarity=0.264  Sum_probs=145.7

Q ss_pred             cccCCCCccCCCC---CCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy4237          47 NELKNYTDVPVKP---PTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNK  111 (225)
Q Consensus        47 ~d~~~~~~~~ik~---a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~  111 (225)
                      .|++|..|+.+++   ...++|.+.|        .+++|++|||.||++    |||.+|++||++||++|...       
T Consensus        20 ~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~IV~~AfeiI~~~-------   92 (193)
T PTZ00091         20 SDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLL-------   92 (193)
T ss_pred             cCcCHHHHhhcccCCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHHH-------
Confidence            6999999998887   5589998877        469999999999999    99999999999999999988       


Q ss_pred             cCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHHH
Q psy4237         112 ATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNL  188 (225)
Q Consensus       112 ~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~L  188 (225)
                               +++||++||++||+||+|.++++++++||.+|||||+++|.||+++||+||+++|++   |+ .++|+++|
T Consensus        93 ---------t~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqvpVdVsp~Rr~~lAirwI~~~ar~~~fR~-~ks~~e~L  162 (193)
T PTZ00091         93 ---------TDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRN-IKTIAECL  162 (193)
T ss_pred             ---------HCCChHHHHHHHHHhCCCCeeeEEeecCCeEEEEeeecChHHHHHHHHHHHHHHHHhhcccC-CCCHHHHH
Confidence                     789999999999999999999999999999999999999999999999999999999   54 67999999


Q ss_pred             HHHHHHHHcCC--CchhhhhHHHHHHHHHhc
Q psy4237         189 AQILIDGADNK--GKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       189 a~EIi~A~~n~--G~aikKK~elHK~AeaNR  217 (225)
                      |+|||+|++|+  |.+|+||+|+||||+|||
T Consensus       163 A~Eli~Aa~~~~~s~AikKKeE~hR~AeANR  193 (193)
T PTZ00091        163 ADEIINASKESSNSYAIKKKDEVERVAKANR  193 (193)
T ss_pred             HHHHHHHHhCCCCCcceehHHHHHHHHHhcC
Confidence            99999999999  559999999999999998

>KOG3291|consensus

Probab=100.00  E-value=5.9e-46  Score=318.79  Aligned_cols=180  Identities=28%  Similarity=0.391  Sum_probs=158.3

Q ss_pred             cceeecccCCCCCCCCCChhHHhHHhhhcccCCCCccCCCCCCCC--CCCCCccchHHHHHHHHHHhcChHHHHHHHHHH
Q psy4237          19 TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSF--QTCSTFYNPVKEKFINYMMKKGNKELAREVFEY   96 (225)
Q Consensus        19 ~~~~~s~y~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~--~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~   96 (225)
                      .+.+||.|+++|.||...++.+.++.   +.....+.+.+-++.-  .....+.|.++.+|+|++|++|||.+|++||+.
T Consensus        25 ~f~~~s~~~~~~~d~sl~dy~~~~~k---~~~~~~~~~~~~~~~~~~ka~~~~~e~l~~~l~n~~~~~GKK~~a~~Iv~~  101 (208)
T KOG3291|consen   25 LFEKWSEDSVEFSDISLQDYIALKPK---DLTQLPHSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLARRIVKH  101 (208)
T ss_pred             HHHHhhcccccccccccccccccccc---cccccccccchhhhhhhhhccccHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            35679999999999999988876653   2222233333333322  334449999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHh
Q psy4237          97 TVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK  176 (225)
Q Consensus        97 al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar  176 (225)
                      ||++|++.                ++.||++||++||+||.|+++++.+.+||++|||||||++.||+++||+||+++|+
T Consensus       102 aleiI~~~----------------t~~NPiqvl~~AI~n~~P~~~~~~i~r~g~~~~vpv~v~~~rr~~~Ai~wi~~~ar  165 (208)
T KOG3291|consen  102 ALEIIKRL----------------TERNPIQVLVQAIENCGPLEDVTRIGRAGTTYQVPVPVSPLRRVNLAIKWILTGAR  165 (208)
T ss_pred             HHHHHHHH----------------hcCCHHHHHHHHHHhcCchhhceeecccceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            99999998                79999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC--CCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237         177 DKP--SEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       177 ~k~--~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR  217 (225)
                      ++.  +.++|+++||+|||+|++|+|.||+|||||||+|++||
T Consensus       166 ~~~~~~~~~~ae~La~ELi~Aakgs~~aikKKdeLhr~a~sNR  208 (208)
T KOG3291|consen  166 ERSFRNIKTLAECLADELIAAAKGSGNAIKKKDELHRMAEANR  208 (208)
T ss_pred             hccccccccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHhccC
Confidence            975  45899999999999999999999999999999999998

>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.1e-45  Score=300.12  Aligned_cols=136  Identities=43%  Similarity=0.705  Sum_probs=131.7

Q ss_pred             CCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEE
Q psy4237          65 TCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRS  144 (225)
Q Consensus        65 t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~  144 (225)
                      +|+.|+|+++++|||+||++|||++|++||+++|+.|+..                ++.||+.+|++||+||+|++++++
T Consensus        13 ~~~~~~~~lv~k~in~lmk~GkK~~A~~i~~~al~~i~~~----------------~~~npi~il~~Ai~n~~P~~~v~~   76 (148)
T PF00177_consen   13 PDPKFNDPLVKKFINRLMKDGKKSKAEKIVYKALEIIKKK----------------TNKNPIQILKQAIENVKPLVEVRS   76 (148)
T ss_dssp             SBTTTCGHHHHHHHHHHHSTTBHHHHHHHHHHHHHHHHHH----------------HSSSHHHHHHHHHHHHS-SEEEEE
T ss_pred             CCcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc----------------cCCCHHHHHHHHHHHhccceeeee
Confidence            6999999999999999999999999999999999999887                799999999999999999999999


Q ss_pred             EeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237         145 IKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       145 ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR  217 (225)
                      +++||++||||++|+++||+++||+||+++|++++ ..+|+++||+||++|++|+|.++++|+|+||+|++||
T Consensus        77 ~k~gg~~~~vP~~i~~~r~~~lAikWi~~~~~~r~-~~~~~~~La~Eii~a~~~~g~aikkK~~lhk~A~~NR  148 (148)
T PF00177_consen   77 IKKGGKTYQVPVPISPKRRIFLAIKWILEAARKRK-EKSFSERLANEIIDASNNKGSAIKKKEELHKMAEANR  148 (148)
T ss_dssp             EEETTEEEEEEEEETHHHHHHHHHHHHHHHHHTSS-SSSHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHTG
T ss_pred             eccCceeEEEEEeecHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999766 6699999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
1i94_G	155	Crystal Structures Of The Small Ribosomal Subunit W		2e-19
1fjg_G	156	Structure Of The Thermus Thermophilus 30s Ribosomal		2e-19
1rss_A	151	Ribosomal Protein S7 From Thermus Thermophilus Leng		3e-19
1x18_F	154	Contact Sites Of Era Gtpase On The Thermus Thermoph		7e-19
1fka_G	151	Structure Of Functionally Activated Small Ribosomal		6e-17
3gty_S	149	Promiscuous Substrate Recognition In Folding And As		3e-16
1vs5_G	179	Crystal Structure Of The Bacterial Ribosome From Es		8e-16
1p6g_G	178	Real Space Refined Coordinates Of The 30s Subunit F		8e-16
3sfs_G	156	Crystal Structure Of Release Factor Rf3 Trapped In		1e-15
2gy9_G	137	Structure Of The 30s Subunit Of A Pre-Translocation		2e-15
3bbn_G	155	Homology Model For The Spinach Chloroplast 30s Subu		5e-14
1eg0_D	146	Fitting Of Components With Known Structure Into An		9e-14
1qd7_F	135	Partial Model For 30s Ribosomal Subunit Length = 13		1e-13
3fih_G	150	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		1e-13
3ofo_G	151	Crystal Structure Of The E. Coli Ribosome Bound To		1e-13
1hus_A	155	Ribosomal Protein S7 Length = 155		4e-13

>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 25  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 68
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A
Sbjct: 69  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 127
Query: 197 DNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + KG  VKKK D+ R  EANRAYAHY +
Sbjct: 128 EGKGGAVKKKEDVERMAEANRAYAHYRW 155

>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 26  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 69
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A
Sbjct: 70  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 128
Query: 197 DNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + KG  VKKK D+ R  EANRAYAHY +
Sbjct: 129 EGKGGAVKKKEDVERMAEANRAYAHYRW 156

>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 21  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 64
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A
Sbjct: 65  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 123
Query: 197 DNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + KG  VKKK D+ R  EANRAYAHY +
Sbjct: 124 EGKGGAVKKKEDVERMAEANRAYAHYRW 151

>pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 154

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 25  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 68
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S ++     ++W ++ A  +P E R +  +A  L+D A
Sbjct: 69  KPRMEVRSRRVGGANYQVPMEVSRRQQSL-ALRWLVQAANQRP-ERRAAVRIAHELMDAA 126
Query: 197 DNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + KG  VKKK D+ R  EANRAYAHY +
Sbjct: 127 EGKGGAVKKKEDVERMAEANRAYAHYRW 154

>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 26  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 69
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A
Sbjct: 70  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 128
Query: 197 DNKGKVVKKKTDLHRQCEANRAY 219
           + KG  VKKK D+ R  EANRAY
Sbjct: 129 EGKGGAVKKKEDVERMAEANRAY 151

>pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 17/157 (10%)
Query: 68  TFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 127
            F + +  K IN +M  G K +A+++  Y    I R + +K               DP  
Sbjct: 10  VFGDVLVAKLINRVMWDGKKTIAQKIV-YGAFDIIREKTKK---------------DPLE 53
Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDN 187
           +  +A+EN KP+L++R  +    TYQVPI + +       ++W +E A+ K       + 
Sbjct: 54  VFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRP-MKEK 112
Query: 188 LAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           LA+ +I   +N G  +KKK D HR  EANRA+AHY +
Sbjct: 113 LAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW 149

>pdb|1VS5|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K         T +SI    +E   + +   E E+        
Sbjct: 18  FGSELLAKFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF------- 62
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFS 185
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R +
Sbjct: 63  -EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLA 121
Query: 186 DNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + L+    D A+NKG  VKK+ D+HR  EAN+A+AHY +
Sbjct: 122 NELS----DAAENKGTAVKKREDVHRMAEANKAFAHYRW 156

>pdb|1P6G|G Chain G, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K         T +SI    +E   + +   E E+        
Sbjct: 17  FGSELLAKFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF------- 61
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFS 185
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R +
Sbjct: 62  -EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLA 120
Query: 186 DNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + L+    D A+NKG  VKK+ D+HR  EAN+A+AHY +
Sbjct: 121 NELS----DAAENKGTAVKKREDVHRMAEANKAFAHYRW 155

>pdb|3SFS|G Chain G, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 156

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K         T +SI    +E   + +   E E+        
Sbjct: 18  FGSELLAKFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF------- 62
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFS 185
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R +
Sbjct: 63  -EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLA 121
Query: 186 DNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + L+    D A+NKG  VKK+ D+HR  EAN+A+AHY +
Sbjct: 122 NELS----DAAENKGTAVKKREDVHRMAEANKAFAHYRW 156

>pdb|2GY9|G Chain G, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 137

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 23/152 (15%)
Query: 76  KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
           KF+N +M  G K         T +SI    +E   + +   E E+         + A+EN
Sbjct: 6   KFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF--------EVALEN 49
Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFSDNLAQIL 192
            +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R ++ L+   
Sbjct: 50  VRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELS--- 106
Query: 193 IDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
            D A+NKG  VKK+ D+HR  EAN+A+AHY +
Sbjct: 107 -DAAENKGTAVKKREDVHRMAEANKAFAHYRW 137

>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 155

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + N +    +N ++K G K LA   ++   +++K+IQ             +    +P  +
Sbjct: 18  YRNRLVNMLVNRILKHGKKSLA---YQILYRAVKKIQ-------------QKTETNPLSV 61
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
           + +AI    P + +++ +    T+QVPI I   + +   ++W +  A+ +P     +  L
Sbjct: 62  LRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGR-NMAFKL 120
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
           +  L+D A   G  V+KK + HR  EANRA+AH+
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHF 154

>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 77  FINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 136
           FIN +M+ G K LA  +F    K I+                E    +P  +  +A+EN 
Sbjct: 15  FINKIMRDGKKNLAARIFYDACKIIQ----------------EKTGQEPLKVFKQAVENV 58
Query: 137 KPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 196
           KP +++RS +     YQVP+ +S +  +   ++W ++ A  +P E R +  +A  L+D A
Sbjct: 59  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 117
Query: 197 DNKGKVVKKKTDLHRQCE 214
           + KG  VKKK D+ R  E
Sbjct: 118 EGKGGAVKKKEDVERMAE 135

>pdb|3FIH|G Chain G, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K         T +SI    +E   + +   E E+        
Sbjct: 16  FGSELLAKFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF------- 60
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFS 185
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R +
Sbjct: 61  -EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLA 119
Query: 186 DNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220
           + L+    D A+NKG  VKK+ D+HR  EAN+A+A
Sbjct: 120 NELS----DAAENKGTAVKKREDVHRMAEANKAFA 150

>pdb|3OFO|G Chain G, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 151

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K         T +SI    +E   + +   E E+        
Sbjct: 17  FGSELLAKFVNILMVDGKKS--------TAESIVYSALETLAQRSGKSELEAF------- 61
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK---DKPSEVRFS 185
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+   DK   +R +
Sbjct: 62  -EVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLA 120
Query: 186 DNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220
           + L+    D A+NKG  VKK+ D+HR  EAN+A+A
Sbjct: 121 NELS----DAAENKGTAVKKREDVHRMAEANKAFA 151

>pdb|1HUS|A Chain A, Ribosomal Protein S7 Length = 155

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 118 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD 177
           RE    DP  + ++A++N  P+L++R+ +     YQVP+ +         ++W ++ A+ 
Sbjct: 50  RERTGKDPXEVFEQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARL 109
Query: 178 KPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           + +E    + LA  + D A+N G  VKK+ D H+  EAN+A+AHY +
Sbjct: 110 R-NEKTXEERLANEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	2e-26
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	2e-26
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	2e-26
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	2e-26
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	2e-26
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	2e-23
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	2e-17
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-16
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	3e-16
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	2e-15

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Length = 151

 Score = 98.8 bits (247), Expect = 2e-26
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +   FIN +M+ G K LA  +F Y   + K IQ EK  +            +P  +
Sbjct: 13  YGDVLVTAFINKIMRDGKKNLAARIF-Y--DACKIIQ-EKTGQ------------EPLKV 56

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
             +A+EN KP +++RS +     YQVP+ +S +  +   ++W ++ A  +  E R +  +
Sbjct: 57  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRI 115

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A  L+D A+ KG  VKKK D+ R  EANRAYAHY +
Sbjct: 116 AHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 151

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Length = 149

 Score = 98.8 bits (247), Expect = 2e-26
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  K IN +M  G K +A+++  Y   +   I+ EK  K            DP  +
Sbjct: 11  FGDVLVAKLINRVMWDGKKTIAQKIV-YG--AFDIIR-EKTKK------------DPLEV 54

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
             +A+EN KP+L++R  +    TYQVPI + +       ++W +E A+ K       + L
Sbjct: 55  FRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAK-KGRPMKEKL 113

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A+ +I   +N G  +KKK D HR  EANRA+AHY +
Sbjct: 114 AEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW 149

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G ... Length = 179

 Score = 99.2 bits (248), Expect = 2e-26
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K  A  +  Y+  +++ +  ++  K                 
Sbjct: 18  FGSELLAKFVNILMVDGKKSTAESIV-YS--ALETLA-QRSGK------------SELEA 61

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+ +  +   +  L
Sbjct: 62  FEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRL 120

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A  L D A+NKG  VKK+ D+HR  EAN+A+AHY +
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155

 Score = 98.4 bits (246), Expect = 2e-26
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 17/154 (11%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + N +    +N ++K G K LA ++  Y  +++K+IQ +K               +P  +
Sbjct: 18  YRNRLVNMLVNRILKHGKKSLAYQIL-Y--RAVKKIQ-QKTET------------NPLSV 61

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
           + +AI    P + +++ +    T+QVPI I   + +   ++W +  A+ K      +  L
Sbjct: 62  LRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAAR-KRPGRNMAFKL 120

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
           +  L+D A   G  V+KK + HR  EANRA+AH+
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHF 154

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155

 Score = 98.4 bits (246), Expect = 2e-26
 Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +  + IN +M  G K  A+++  YT  +   I+ E+  K            DP  +
Sbjct: 17  YNSKLVTRLINKIMIDGKKSKAQKIL-YT--AFDIIR-ERTGK------------DPMEV 60

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            ++A++N  P+L++R+ +     YQVP+ +         ++W ++ A+ + +E    + L
Sbjct: 61  FEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERL 119

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A  ++D A+N G  VKK+ D H+  EAN+A+AHY +
Sbjct: 120 ANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW 155

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 76  KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
             + +    G K +   + ++  + I         +            +P  ++  AI N
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIH----LLTGE------------NPLQVLVNAIIN 118

Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILI 193
           + P      I RA    +  + +S      + +      A++    +    ++ LA  LI
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178

Query: 194 DGADNKGKV--VKKKTDLHRQCEANR 217
           + A        +KKK +L R  ++NR
Sbjct: 179 NAAKGSSNSYAIKKKDELERVAKSNR 204

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 76  KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
             +      G K  A  + ++T+  I        ++            +P  ++  AI N
Sbjct: 96  SLMMNGRNNGKKLKAVRIIKHTLDIIN----VLTDQ------------NPIQVVVDAITN 139

Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILI 193
           T P      +       +  + +S      + +      A++    +    ++ LA+ LI
Sbjct: 140 TGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELI 199

Query: 194 DGADNKGKV--VKKKTDLHRQCEANR 217
           + A        +KKK +L R  ++NR
Sbjct: 200 NAAKGSSTSYAIKKKDELERVAKSNR 225

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 25/155 (16%)

Query: 72  PVKEKFINYMM----KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 127
           P+ E+ I  +M      G K L  +V +   + I         +            +P  
Sbjct: 62  PIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIH----LVTGR------------NPLE 105

Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFS 185
           +   A++N  P      I  A V  +  + ++        + + I+  ++    S    +
Sbjct: 106 VFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIA 165

Query: 186 DNLAQILIDGADNKGKV---VKKKTDLHRQCEANR 217
           + LA  +I+   N  +    ++KK ++ +  + NR
Sbjct: 166 ETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 72  PVKEKFINYMMKKGNKELAREVFEYTVKSI----KRIQIEKYNKATSDEERESIILDPYV 127
            + E+ IN +M+ G             +      K+++  +  K       +    +P  
Sbjct: 65  HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124

Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFS 185
           ++  AIEN  P     S+    + Y V + IS        ++     A  K   +++ F+
Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184

Query: 186 DNLAQILIDGADN--KGKVVKKKTDLHRQCEANR 217
           + LA+ +I  A+   K     KK ++ R  E++R
Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	100.0
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	100.0
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	100.0
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	100.0
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	100.0
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	100.0
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	100.0
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	100.0
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	100.0
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	100.0

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-57  Score=373.89  Aligned_cols=144  Identities=33%  Similarity=0.540  Sum_probs=140.7

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+||+|++|||+||++|||++|++||+.||++|+.+                +++||++||++||+||+|+++|+
T Consensus         6 ~~dp~~~~~lv~kliN~lM~~GKK~~A~~Iv~~a~~~I~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk   69 (149)
T 3gty_S            6 PPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREK----------------TKKDPLEVFRQAVENVKPVLEVR   69 (149)
T ss_dssp             CCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHT----------------TSSCHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH----------------cCCcHHHHHHHHHHhCCCCeEEE
Confidence            57999999999999999999999999999999999999987                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus        70 s~rvGG~~yqvPv~v~~~rr~~lAirWi~~~ar~r~-~k~m~~~LA~Eli~A~~~~g~aikKKee~hkmAeaNRAfahyR  148 (149)
T 3gty_S           70 PRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKK-GRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYR  148 (149)
T ss_dssp             EECSSSSCEEEEEECCTHHHHHHHHHHHHHHHHTCS-SSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTC
T ss_pred             EEeeCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHhHhHhhcC
Confidence            999999999999999999999999999999999986 5699999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       149 w  149 (149)
T 3gty_S          149 W  149 (149)
T ss_dssp             C
T ss_pred             C
Confidence            9

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...

Probab=100.00  E-value=1.2e-57  Score=384.65  Aligned_cols=146  Identities=29%  Similarity=0.479  Sum_probs=137.4

Q ss_pred             CCCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeE
Q psy4237          63 FQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL  142 (225)
Q Consensus        63 ~~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l  142 (225)
                      ..+||+|+|++|++|||+||++|||++|++||+.||++|+.+                +++||++||++||+||+|+++|
T Consensus        12 ~~pdp~y~~~lV~kliN~lM~~GKKs~A~~Iv~~A~~~I~~k----------------t~~nPl~vl~~AI~Nv~P~veV   75 (179)
T 3i1m_G           12 ILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQR----------------SGKSELEAFEVALENVRPTVEV   75 (179)
T ss_dssp             CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCSHHHHHHHHHHHCCSEEE
T ss_pred             CCCCCCcCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----------------hCCCHHHHHHHHHHhCCCCeEE
Confidence            357999999999999999999999999999999999999998                8999999999999999999999


Q ss_pred             EEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhcccccc
Q psy4237         143 RSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHY  222 (225)
Q Consensus       143 ~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahy  222 (225)
                      +++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+||||||||
T Consensus        76 ks~rvGG~tyqVPv~V~p~Rr~~lAirWii~~arkR~-~k~m~erLA~ELidAa~~~G~AikKKee~HkmAeANRAfaHy  154 (179)
T 3i1m_G           76 KSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHY  154 (179)
T ss_dssp             ECCCCSSSCCCEEEECCTTHHHHHHHHHHHHHHTTCC-SSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC--
T ss_pred             EEEeeCCEEEEEccccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHhHhHHhh
Confidence            9999999999999999999999999999999999975 669999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy4237         223 YFG  225 (225)
Q Consensus       223 RWw  225 (225)
                      |||
T Consensus       155 Rw~  157 (179)
T 3i1m_G          155 RWL  157 (179)
T ss_dssp             ---
T ss_pred             ccc
Confidence            999

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...

Probab=100.00  E-value=1.2e-56  Score=370.04  Aligned_cols=144  Identities=35%  Similarity=0.590  Sum_probs=135.6

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+|++|++|||+||++|||++|++||+.||++|+.+                +++||+++|++||+||+|+++++
T Consensus         8 ~~dp~~~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk   71 (151)
T 1rss_A            8 QPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEK----------------TGQEPLKVFKQAVENVKPRMEVR   71 (151)
T ss_dssp             CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEE
Confidence            45999999999999999999999999999999999999988                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|++.||+++||+||+++|++++ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus        72 ~~rvGG~tyqvPv~v~~~Rr~~lAirWi~~~ar~r~-~k~m~~~La~EiidA~~~~g~aikKKee~hrmAeaNRAfahyR  150 (151)
T 1rss_A           72 SRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYR  150 (151)
T ss_dssp             EEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSC
T ss_pred             EeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCceeehHHHHHHHHHHhHhhhccC
Confidence            999999999999999999999999999999999986 5599999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       151 w  151 (151)
T 1rss_A          151 W  151 (151)
T ss_dssp             C
T ss_pred             C
Confidence            8

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1

Probab=100.00  E-value=2e-56  Score=370.12  Aligned_cols=144  Identities=27%  Similarity=0.504  Sum_probs=132.8

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+|++|++|||+||++|||++|++||+.||++|+.+                +++||++||++||+||+|+++|+
T Consensus        12 ~~dp~y~~~lV~kliN~lM~~GKKs~A~~Iv~~a~~~I~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk   75 (155)
T 1hus_A           12 LPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRER----------------TGKDPMEVFEQALKNVMPVLEVR   75 (155)
T ss_dssp             CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEE
Confidence            45999999999999999999999999999999999999998                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus        76 ~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~~~~g~aikKKee~hrmAeaNRAfahyR  154 (155)
T 1hus_A           76 ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYR  154 (155)
T ss_dssp             CCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC-------
T ss_pred             EeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCceeehHHHHHHHHHHhHhhhccC
Confidence            999999999999999999999999999999999986 5699999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       155 w  155 (155)
T 1hus_A          155 W  155 (155)
T ss_dssp             -
T ss_pred             C
Confidence            8

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=1.1e-54  Score=359.57  Aligned_cols=143  Identities=28%  Similarity=0.509  Sum_probs=139.4

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+|++|++|||+||++|||++|++||+.||++|+.+                +++||++||++||+||+|+++|+
T Consensus        13 ~~dp~y~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk   76 (155)
T 3bbn_G           13 KSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQK----------------TETNPLSVLRQAIRGVTPDIAVK   76 (155)
T ss_dssp             CCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTT----------------CSSCTTHHHHHHGGGTCCSEEEC
T ss_pred             CCCCccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------------cCCChHHHHHHHHHhCCCCeEEE
Confidence            56999999999999999999999999999999999999887                89999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus        77 ~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~~~~g~aikKKee~hkmAeaNRAfahyR  155 (155)
T 3bbn_G           77 ARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRP-GRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR  155 (155)
T ss_dssp             CEEETTEEECCEEECCHHHHHHHHTTHHHHHHHTCC-SSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred             EeccCCeEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999999999999986 4599999999999999999999999999999999999999998

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T

Probab=100.00  E-value=3.9e-47  Score=325.28  Aligned_cols=154  Identities=18%  Similarity=0.248  Sum_probs=147.3

Q ss_pred             cccCCCCccCC-C---CCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4237          47 NELKNYTDVPV-K---PPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYN  110 (225)
Q Consensus        47 ~d~~~~~~~~i-k---~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~  110 (225)
                      .|++|..|+.+ +   |...++|.+.+        +|++|++|||+||++    |||++|++||+.||++|+.+      
T Consensus        25 ~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Iv~~A~~~I~~k------   98 (200)
T 2xzm_G           25 QDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLV------   98 (200)
T ss_dssp             CSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHHHHHHHHHHHHHHHH------
T ss_pred             cccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH------
Confidence            78999999999 4   88888988766        689999999999999    99999999999999999998      


Q ss_pred             ccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHH
Q psy4237         111 KATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDN  187 (225)
Q Consensus       111 ~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~  187 (225)
                                +++||++||++||+||+|+++++++++||.+||||++|++.||+++||+||+++|++   |+ .++|+++
T Consensus        99 ----------t~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~-~k~m~e~  167 (200)
T 2xzm_G           99 ----------TGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKS-MRSIAET  167 (200)
T ss_dssp             ----------HCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred             ----------cCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccC-CCcHHHH
Confidence                      899999999999999999999999999999999999999999999999999999999   54 6699999


Q ss_pred             HHHHHHHHHcC---CCchhhhhHHHHHHHHHhc
Q psy4237         188 LAQILIDGADN---KGKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       188 La~EIi~A~~n---~G~aikKK~elHK~AeaNR  217 (225)
                      ||+||++|++|   +|.+|+||+|+||||+|||
T Consensus       168 LA~EiidAa~~~~~~g~AikKKee~hrmAeANR  200 (200)
T 2xzm_G          168 LADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR  200 (200)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCccCcchhhHHHHHHHHHhcC
Confidence            99999999999   9999999999999999998

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1

Probab=100.00  E-value=6.1e-47  Score=326.63  Aligned_cols=165  Identities=24%  Similarity=0.248  Sum_probs=143.8

Q ss_pred             eeecccCCCCCCCCCChhHHhHHhhhcccCCCCccCCCCCCCCCCCC--------CccchHHHHHHHHHHh---------
Q psy4237          21 VRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCS--------TFYNPVKEKFINYMMK---------   83 (225)
Q Consensus        21 ~~~s~y~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~~t~~--------~~~d~lv~kfiN~lMk---------   83 (225)
                      .+||.|++.|.||..++.                +.++|...++|.+        .|+|++|++|||.||+         
T Consensus        22 ~kws~~dv~v~dp~l~~y----------------i~~~p~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~   85 (218)
T 1iqv_A           22 GRWSTEDVEVKDPSLKPY----------------INLEPRLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVA   85 (218)
T ss_dssp             TTBCCTTCCCCCTTTGGG----------------SBCSCC------------------CBHHHHHHHHHHTTCCC-----
T ss_pred             ccccCCCCeecCCchhhh----------------cccCCccCCCcchHHHhhhcccccChHHHHHHhHhhhccccccccc
Confidence            579999999999987654                5556666666644        5678999999999999         


Q ss_pred             -----------cChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeE
Q psy4237          84 -----------KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTY  152 (225)
Q Consensus        84 -----------~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~y  152 (225)
                                 +|||++|++||+.||++|+++                +++||++||++||+|++|.++++++++||.+|
T Consensus        86 ~~~~~~~~r~n~GKK~~A~~Iv~~Af~iI~~~----------------t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~y  149 (218)
T 1iqv_A           86 GHFMRREHRSLNSKKVRAYEVVKEAFKIIEKR----------------TGKNPIQVLVWAIENAAPREDTTSVMFGGIRY  149 (218)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHH----------------HSSCHHHHHHHHHHHHSCSCEEEEEEETTEEE
T ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEEEeccCCEEE
Confidence                       999999999999999999998                79999999999999999999999999999999


Q ss_pred             EeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHcCCC--chhhhhHHHHHHHHHhc
Q psy4237         153 QVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILIDGADNKG--KVVKKKTDLHRQCEANR  217 (225)
Q Consensus       153 qVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~La~EIi~A~~n~G--~aikKK~elHK~AeaNR  217 (225)
                      ||||+|++.||+++||+||+++|+++  ++.++|+++||+||++|++|+|  .+|+||+|+||||+|||
T Consensus       150 qvPV~V~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s~AikKKee~hRmAeaNR  218 (218)
T 1iqv_A          150 HVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  218 (218)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             EEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHhcC
Confidence            99999999999999999999999992  2366999999999999999986  99999999999999998

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F

Probab=100.00  E-value=2.4e-46  Score=324.68  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=146.0

Q ss_pred             cccCCCCccCCC-CCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccC
Q psy4237          47 NELKNYTDVPVK-PPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKAT  113 (225)
Q Consensus        47 ~d~~~~~~~~ik-~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~  113 (225)
                      .|++|..|+.++ |...++|.+.+        .||+|++|||+||++    |||++|++||+.||++|+.+         
T Consensus        54 ~d~~l~~yi~~~~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Ivy~AfeiI~~k---------  124 (225)
T 3u5c_F           54 KDASLVDYVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVL---------  124 (225)
T ss_dssp             SSTTTBTTBCCCSCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHHHHHHHHHHHT---------
T ss_pred             eccchhheeeccCCceecccCCCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHh---------
Confidence            699999999999 88889998755        669999999999998    99999999999999999998         


Q ss_pred             CchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHH
Q psy4237         114 SDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQI  191 (225)
Q Consensus       114 ~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~La~E  191 (225)
                             +++||++||++||+||+|+++++.+..||.+||||++|++.||+++||+||+++|+++  ++.++|+++||+|
T Consensus       125 -------T~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~E  197 (225)
T 3u5c_F          125 -------TDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEE  197 (225)
T ss_dssp             -------TCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             -------cCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence                   8999999999999999999998888888999999999999999999999999999993  2467999999999


Q ss_pred             HHHHHcCCCc--hhhhhHHHHHHHHHhc
Q psy4237         192 LIDGADNKGK--VVKKKTDLHRQCEANR  217 (225)
Q Consensus       192 Ii~A~~n~G~--aikKK~elHK~AeaNR  217 (225)
                      ||||++|+|.  +|+||+|+||||+|||
T Consensus       198 LidAa~~~G~s~AiKKKee~HRmAeANR  225 (225)
T 3u5c_F          198 LINAAKGSSTSYAIKKKDELERVAKSNR  225 (225)
T ss_dssp             HHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence            9999999996  9999999999999998

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.4e-47  Score=327.27  Aligned_cols=156  Identities=21%  Similarity=0.254  Sum_probs=148.2

Q ss_pred             hcccCCCCccCC---CCCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4237          46 NNELKNYTDVPV---KPPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYN  110 (225)
Q Consensus        46 ~~d~~~~~~~~i---k~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~  110 (225)
                      -.|++|..|+.+   .|...++|.+.|        +|++|++|||+||++    |||++|++||+.||++|+.+      
T Consensus        30 v~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Ivy~A~~~I~~k------  103 (204)
T 2zkq_g           30 INDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL------  103 (204)
Confidence            379999999999   589999999988        479999999999999    99999999999999999987      


Q ss_pred             ccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHH
Q psy4237         111 KATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNL  188 (225)
Q Consensus       111 ~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~L  188 (225)
                                +++||++||++||+||+|+++++++++||.+||||++|++.||+++||+||+++|+++  ++.++|+++|
T Consensus       104 ----------t~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~L  173 (204)
T 2zkq_g          104 ----------TGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL  173 (204)
Confidence                      7999999999999999999999999999999999999999999999999999999993  2367999999


Q ss_pred             HHHHHHHHcCCCc--hhhhhHHHHHHHHHhc
Q psy4237         189 AQILIDGADNKGK--VVKKKTDLHRQCEANR  217 (225)
Q Consensus       189 a~EIi~A~~n~G~--aikKK~elHK~AeaNR  217 (225)
                      |+||++|++|+|.  +|+||+|+||||+|||
T Consensus       174 A~ElidAa~~~g~s~AikKKee~hrmAeANR  204 (204)
T 2zkq_g          174 ADELINAAKGSSNSYAIKKKDELERVAKSNR  204 (204)
Confidence            9999999999997  9999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1rssa_	145	a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo	2e-31
d2qalg1	150	a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich	4e-28
d1husa_	139	a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear	4e-25
d1iqva_	201	a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc	9e-18

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +   FIN +M+ G K LA  +F                       +E    +P  +
Sbjct: 7   YGDVLVTAFINKIMRDGKKNLAARIFYDAC----------------KIIQEKTGQEPLKV 50

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
             +A+EN KP +++RS +     YQVP+ +S +  +   ++W ++ A  +  E R +  +
Sbjct: 51  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRI 109

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A  L+D A+ KG  VKKK D+ R  EANRAYAHY +
Sbjct: 110 AHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 145

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 4e-28
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K  A  +    ++       ++  K                 
Sbjct: 16  FGSELLAKFVNILMVDGKKSTAESIVYSALE----TLAQRSGK------------SELEA 59

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+ +  +   +  L
Sbjct: 60  FEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRL 118

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220
           A  L D A+NKG  VKK+ D+HR  EAN+A+A
Sbjct: 119 ANELSDAAENKGTAVKKREDVHRMAEANKAFA 150

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 93.8 bits (233), Expect = 4e-25
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +  + IN +M  G K  A+++       I+    E+  K            DP  +
Sbjct: 9   YNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIR----ERTGK------------DPMEV 52

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            ++A++N  P+L++R+ +     YQVP+ +         ++W ++ A+ + +E    + L
Sbjct: 53  FEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERL 111

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEAN 216
           A  ++D A+N G  VKK+ D H+  EAN
Sbjct: 112 ANEIMDAANNTGAAVKKREDTHKMAEAN 139

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 76.1 bits (187), Expect = 9e-18
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 72  PVKEKFINYMMKKGNKELAREVFEYTVKSI----KRIQIEKYNKATSDEERESIILDPYV 127
            + E+ IN +M+ G             +      K+++  +  K       +    +P  
Sbjct: 48  HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 107

Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD--KPSEVRFS 185
           ++  AIEN  P     S+    + Y V + IS        ++     A      +++ F+
Sbjct: 108 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 167

Query: 186 DNLAQILIDGADN--KGKVVKKKTDLHRQCEANR 217
           + LA+ +I  A+   K     KK ++ R  E++R
Sbjct: 168 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1rssa_	145	Ribosomal protein S7 {Thermus thermophilus [TaxId:	100.0
d2qalg1	150	Ribosomal protein S7 {Escherichia coli [TaxId: 562	100.0
d1husa_	139	Ribosomal protein S7 {Bacillus stearothermophilus	100.0
d1iqva_	201	Ribosomal protein S7 {Archaeon Pyrococcus horikosh	100.0

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-55  Score=356.66  Aligned_cols=144  Identities=35%  Similarity=0.590  Sum_probs=135.4

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+||+|++|||+||++|||++|++||+++|++|+..                +++||+++|++||+||+|+++|+
T Consensus         2 ~pdp~y~d~lv~k~in~lMk~GKK~~A~~iv~~al~~i~~~----------------~~~npi~vl~~Ai~n~~P~~evk   65 (145)
T d1rssa_           2 QPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEK----------------TGQEPLKVFKQAVENVKPRMEVR   65 (145)
T ss_dssp             CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh----------------ccCccHHHHHHHHhcccccccee
Confidence            57999999999999999999999999999999999999987                79999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY  223 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR  223 (225)
                      ++++||.+||||++|+++||+++||+||+++|++|+ .++|+++||+||++|++|+|.+|+||+|+||+|+|||||||||
T Consensus        66 ~~r~gG~~~~vPv~i~~~rr~~lAirwil~aa~~r~-~k~~~~~La~Eii~A~~~~g~aikkK~e~hK~A~aNRa~ah~R  144 (145)
T d1rssa_          66 SRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYR  144 (145)
T ss_dssp             EEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSC
T ss_pred             eeeeCCcceeeeeccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCCceeehHHHHHHHHHHHHhhhccC
Confidence            999999999999999999999999999999999986 4589999999999999999999999999999999999999999


Q ss_pred             c
Q psy4237         224 F  224 (225)
Q Consensus       224 W  224 (225)
                      |
T Consensus       145 w  145 (145)
T d1rssa_         145 W  145 (145)
T ss_dssp             C
T ss_pred             C
Confidence            9

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-51  Score=337.15  Aligned_cols=140  Identities=29%  Similarity=0.470  Sum_probs=136.1

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+|++|++|||+||++|||++|++||+++|++|+..                +++||+++|++||+||+|+++++
T Consensus        11 ~pD~~y~~~lV~kfiN~lM~~GKK~~A~~iv~~al~~i~~~----------------t~~~pi~vl~~AI~nv~P~~ev~   74 (150)
T d2qalg1          11 LPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQR----------------SGKSELEAFEVALENVRPTVEVK   74 (150)
T ss_dssp             CCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHSCCSEEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh----------------cCCCcchHHHHHHHHhccceeEE
Confidence            45999999999999999999999999999999999999988                79999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhcccc
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYA  220 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRaya  220 (225)
                      ++++||.+||||++|++.|++++||+||+++|++++ .++|+++||+||++|++|+|.+|+||+|+||||+||||||
T Consensus        75 ~~r~gG~~yqvP~~v~~~r~~~lAirWi~~aar~r~-~k~~~~~La~Eii~A~~~~g~avkKk~e~hk~AeaNRafa  150 (150)
T d2qalg1          75 SRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA  150 (150)
T ss_dssp             EEECSSSEEEEEEECCHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTTTTTTC
T ss_pred             eeeeccccceeeeecChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCCeEeeHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999986 4699999999999999999999999999999999999997

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-49  Score=319.22  Aligned_cols=136  Identities=26%  Similarity=0.464  Sum_probs=132.3

Q ss_pred             CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237          64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR  143 (225)
Q Consensus        64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~  143 (225)
                      .+||+|+|++|++|||+||++|||++|++||+++|++|+.+                +++||+++|++||+||+|.++|+
T Consensus         4 ~pd~~y~~~lv~k~iN~lM~~GKK~~A~kiv~~al~~i~~~----------------~~~~pi~vl~~Ai~n~~P~~ev~   67 (139)
T d1husa_           4 LPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRER----------------TGKDPMEVFEQALKNVMPVLEVR   67 (139)
T ss_dssp             CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCccCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh----------------cCCCcchHHHHHHHhhhhhhhee
Confidence            46999999999999999999999999999999999999998                79999999999999999999999


Q ss_pred             EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHh
Q psy4237         144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEAN  216 (225)
Q Consensus       144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaN  216 (225)
                      ++++||.+||||++++++||+++||+||+++|++|+ ..+|+++||+||++|++|+|.+|+||+|+||||+||
T Consensus        68 ~~r~GG~~yqvPv~i~~~rr~~lAirwi~~~a~~r~-~~~~~~~La~Eii~A~~~~g~avkKK~e~hk~AeaN  139 (139)
T d1husa_          68 ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAANNTGAAVKKREDTHKMAEAN  139 (139)
T ss_dssp             CCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC
T ss_pred             eeeeCccceEeeEeeChHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCceeeeHHHHHHHHhcC
Confidence            999999999999999999999999999999999986 559999999999999999999999999999999998

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.2e-45  Score=314.48  Aligned_cols=156  Identities=23%  Similarity=0.254  Sum_probs=137.4

Q ss_pred             hcccCCCCccCCCCCCCCCCCCCccc--------hHHHHHHHHHHhcC--------------------hHHHHHHHHHHH
Q psy4237          46 NNELKNYTDVPVKPPTSFQTCSTFYN--------PVKEKFINYMMKKG--------------------NKELAREVFEYT   97 (225)
Q Consensus        46 ~~d~~~~~~~~ik~a~~~~t~~~~~d--------~lv~kfiN~lMk~G--------------------KK~~A~~iv~~a   97 (225)
                      -.|++|..|+.++|...++|++.|..        |+|++|||.||.+|                    ||.+|++||++|
T Consensus        14 v~d~~l~~yi~~~~~~~pht~gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~~~~GKK~~A~kIv~~A   93 (201)
T d1iqva_          14 VKDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEA   93 (201)
T ss_dssp             CCCTTTGGGSBCSCC------------------CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHH
T ss_pred             EcCcchhheeecCceeecccccchhhhhcccccchHHHHHHHHhhhccccccccccccchhccccCCccHHHHHHHHHHH
Confidence            37999999999999999999999855        89999999999865                    899999999999


Q ss_pred             HHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc
Q psy4237          98 VKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD  177 (225)
Q Consensus        98 l~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~  177 (225)
                      |++|+..                +++||++||++||+|++|.++++++++||.+||||+++++.||+++||+||+++|++
T Consensus        94 ~~iI~~k----------------t~~nPl~Vl~~AI~N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~  157 (201)
T d1iqva_          94 FKIIEKR----------------TGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASA  157 (201)
T ss_dssp             HHHHHHH----------------HSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----------------hCCChHHHHHHHHHhhcceEEEEEEecCCcccccCeeeCHHHHHHHHHHHHHHHHHH
Confidence            9999998                899999999999999999999999999999999999999999999999999999998


Q ss_pred             C--CCCCCHHHHHHHHHHHHHcCC--CchhhhhHHHHHHHHHhc
Q psy4237         178 K--PSEVRFSDNLAQILIDGADNK--GKVVKKKTDLHRQCEANR  217 (225)
Q Consensus       178 k--~~~~~~~e~La~EIi~A~~n~--G~aikKK~elHK~AeaNR  217 (225)
                      +  ++.++|+++||+||++|++|+  |.||+||+|+||||+|||
T Consensus       158 ~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~hk~A~aNR  201 (201)
T d1iqva_         158 KCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  201 (201)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             hcCCCCCCHHHHHHHHHHHHHcCCCCcceEeehHHHHHHHHhcC
Confidence            4  246699999999999999985  779999999999999998