Psyllid ID: psy423

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MEPRIRRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNKCNY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHcccEEEEEEcccccccEEEEEEEEEEEEccccccccccccEEEccHHHHHHHHHHcccccccccccccEEEEEcccccccccEEEEEEcccEEEEEEccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEccccccccccccccccccccccccccEEEEEEcccccHEEEEcccEEEEEEccccHHEccccccccEEEEcccccccccccEEEEEccccHHHHHcccHHHHHcccccccHEEEccccEEEEEccccccccccEEEEccHHHHHHHHHHHccccccccccccEEEEEccccccccccEEEEEcccEEEEEEcccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
meprirretgspvmksvlpysprsfrhtadwdindsvipragrrfelltferlperliledgkvvnmsTLGHaqmvihpgnrvLLVTEFnswqewadghcrfvypasseeAKRHASgwamrntnnhnVHILKKSCLGvlvcsrrcvlpsgdsvhlrpaICDKarkkqtgkpcpnrkctgrleimpcrghcgypvthfwrhtdygiffqakgvhdhlrpeaksTSEARRSLGAGRRVRGLAVLLTREAALGNKCNY
Flexible Loop (DISEMBL)
meprirretgspvmksvlpysprsfrhtadwdindsviPRAGRRFELltferlperliledGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVlpsgdsvhlrpaicdkarkkqtgkpcpnrkctgrleimpcrGHCGYPVTHFWRHTDYGIFFQAKGVHDHLrpeakstsearrslgagrrvrglavlltreaalgnkcny
Low Complexity Region (SEG)
MEPRIRRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNKCNY
Disordered region (IsUnstruct)
***********************SFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPA********ASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDK*********CPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHD*********************VRGLAVLLTR**********
Disordered Region (DISOPRED)
*********************************************************************LG*AQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICD**********CPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGV*******************************************
Disordered Region (DISEMBL)
**********SPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPA*********SGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKA*********PNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVH*****************GAGRRVRGLAVLLTREAALGNKCNY
Disordered Region (DISPRO)
****************************ADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDH****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEPRIRRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNKCNY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q27403	504	Transcription factor glia	yes	N/A	0.654	0.331	0.706	1e-70
Q9VLA2	613	Transcription factor glia	no	N/A	0.592	0.246	0.666	2e-60
O75603	506	Chorion-specific transcri	yes	N/A	0.545	0.274	0.652	2e-51
O09102	504	Chorion-specific transcri	yes	N/A	0.552	0.279	0.643	2e-50
Q9Z288	436	Chorion-specific transcri	no	N/A	0.560	0.327	0.579	3e-45
P70348	436	Chorion-specific transcri	no	N/A	0.537	0.314	0.597	4e-45
Q9NP62	436	Chorion-specific transcri	no	N/A	0.560	0.327	0.565	2e-44

>sp|Q27403|GCM_DROME Transcription factor glial cells missing OS=Drosophila melanogaster GN=gcm PE=2 SV=2

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 138/167 (82%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V EF+ + +W++GHCR +Y   S+EA++HASGWAMRNTNNHNV+ILKKSCLGVL+CS +C
Sbjct: 44  VGEFDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKC 103

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
            LP+G SVHLRPAICDKAR+KQ GK CPNR C GRLEI  CRGHCGYPVTHFWR    GI
Sbjct: 104 KLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTHFWRRDGNGI 163

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
           +FQAKG HDH RPEAK ++EARR L  GRRVR LAV+L RE+AL +K
Sbjct: 164 YFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAVMLARESALSDK 210

Transcription factor that induces gliogenesis. It determines the choice between glial and neuronal fates. Also has a role in the differentiation of the plasmatocyte/macrophage lineage of hemocytes.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missing 2 OS=Drosophila melanogaster GN=gcm2 PE=2 SV=3

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 104/156 (66%), Positives = 125/156 (80%), Gaps = 5/156 (3%)

Query: 88  EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
           EF+ + EW+DGH R +Y   +EEAK+H SGWAMRNTNNHNV+ILKKSCLGVLVCS+ C L
Sbjct: 88  EFDEFNEWSDGHVRHIYSLHNEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTL 147

Query: 148 PSGDSVHLRPAICDKARKKQTGKPCPNRKC-TGRLEIMPCRGHCGYPVTHFWRHTDYGIF 206
           P+G  ++LRPAICDKAR+KQ GK CPN+ C  GRLEI PCRGHCGYPVTHFWRH+   IF
Sbjct: 148 PNGSKINLRPAICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF 207

Query: 207 FQAKGVHDHLRPEAKSTSEARRSLG----AGRRVRG 238
           FQAKGVHDHLRP+ K++S ++R+ G    AG+   G
Sbjct: 208 FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANG 243

Transcription factor with a minor role promoting glial cell differentiation and a more significant role in hematocyte differentiation. Gcm2, together with gcm, is required for the proliferation of plasmatocyte precursors, the expression of Croquemort protein, and the ability of plasmatocytes to convert into macrophages.

Drosophila melanogaster (taxid: 7227)

>sp|O75603|GCM2_HUMAN Chorion-specific transcription factor GCMb OS=Homo sapiens GN=GCM2 PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 110/141 (78%), Gaps = 2/141 (1%)

Query: 89  FNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLP 148
           F+ ++EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC++ C LP
Sbjct: 35  FDQFREWPDGYVRFIYSSDEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLP 94

Query: 149 SGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQ 208
            G  + LRPAICDKAR KQ  K CPN  C   LE++PCRGH GYPVT+FWR     IFFQ
Sbjct: 95  DGSRLQLRPAICDKARLKQQKKACPN--CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQ 152

Query: 209 AKGVHDHLRPEAKSTSEARRS 229
           AKGVHDH RPE+KS +EARRS
Sbjct: 153 AKGVHDHPRPESKSETEARRS 173

Probable transcriptional regulator.

Homo sapiens (taxid: 9606)

>sp|O09102|GCM2_MOUSE Chorion-specific transcription factor GCMb OS=Mus musculus GN=Gcm2 PE=2 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 109/143 (76%), Gaps = 2/143 (1%)

Query: 87  TEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCV 146
           T F+ ++EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC+R C 
Sbjct: 33  THFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCARACA 92

Query: 147 LPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIF 206
           L  G  + LRPAICDKAR KQ  K CPN  C   LE++PCRGH GYPVT+FWR     IF
Sbjct: 93  LKDGSHLQLRPAICDKARLKQQKKACPN--CHSPLELVPCRGHSGYPVTNFWRLDGNAIF 150

Query: 207 FQAKGVHDHLRPEAKSTSEARRS 229
           FQAKGVHDH RPE+KS +E RRS
Sbjct: 151 FQAKGVHDHPRPESKSETEGRRS 173

Probable transcriptional regulator.

Mus musculus (taxid: 10090)

>sp|Q9Z288|GCM1_RAT Chorion-specific transcription factor GCMa OS=Rattus norvegicus GN=Gcm1 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 2/145 (1%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V + + +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C
Sbjct: 27  VKKTDWFQEWPDSYVKHIYSSDDRSAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDC 86

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
               G  ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    I
Sbjct: 87  STEEGRKIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFI 144

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSL 230
           FFQ+KG HDH RPE K  +EARR++
Sbjct: 145 FFQSKGEHDHPRPETKLEAEARRAM 169

Transcription factor that is necessary for placental development.

Rattus norvegicus (taxid: 10116)

>sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa OS=Mus musculus GN=Gcm1 PE=1 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 92  WQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGD 151
           +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C    G 
Sbjct: 33  FQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGR 92

Query: 152 SVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKG 211
            ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    IFFQ+KG
Sbjct: 93  KIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG 150

Query: 212 VHDHLRPEAKSTSEARRSL 230
            HDH RPE K  +EARR++
Sbjct: 151 EHDHPRPETKLEAEARRAM 169

Transcription factor that is necessary for placental development.

Mus musculus (taxid: 10090)

>sp|Q9NP62|GCM1_HUMAN Chorion-specific transcription factor GCMa OS=Homo sapiens GN=GCM1 PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%), Gaps = 2/145 (1%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V + + +QEW D + + +Y +  + A+RH S WAMRNTNNHN  ILKKSCLGV+VC R C
Sbjct: 27  VKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDC 86

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
           +   G  ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    I
Sbjct: 87  LAEEGRKIYLRPAICDKARQKQQRKRCPN--CDGPLKLIPCRGHGGFPVTNFWRHDGRFI 144

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSL 230
           FFQ+KG HDH +PE K  +EARR++
Sbjct: 145 FFQSKGEHDHPKPETKLEAEARRAM 169

Transcription factor that is necessary for placental development. Binds to the trophoblast-specific element 2 (TSE2) of the aromatase gene enhancer.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
242018087	621	transcription factor glial cells missing	0.654	0.268	0.838	9e-84
270007982	507	hypothetical protein TcasGA2_TC014730 [T	0.698	0.351	0.677	2e-83
328706784	609	PREDICTED: hypothetical protein LOC10015	0.796	0.333	0.604	4e-83
189237867	393	PREDICTED: similar to AGAP007783-PA [Tri	0.698	0.452	0.677	7e-82
332024441	683	Transcription factor glial cells missing	0.776	0.289	0.613	2e-78
307211945	806	Transcription factor glial cells missing	0.796	0.251	0.600	3e-78
345497415	623	PREDICTED: hypothetical protein LOC10011	0.792	0.324	0.599	1e-77
328787252	689	PREDICTED: hypothetical protein LOC41033	0.792	0.293	0.599	1e-77
383864687	675	PREDICTED: uncharacterized protein LOC10	0.776	0.293	0.604	4e-77
350404736	685	PREDICTED: hypothetical protein LOC10074	0.792	0.294	0.591	5e-77

>gi|242018087|ref|XP_002429513.1| transcription factor glial cells missing, putative [Pediculus humanus corporis] gi|212514455|gb|EEB16775.1| transcription factor glial cells missing, putative [Pediculus humanus corporis]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 155/167 (92%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           VTEF++W+EWA+GHCR VYP+S EEAKRH SGWAMRNTNNHNVHILKKSCLGVLVCS+RC
Sbjct: 32  VTEFDTWEEWANGHCRMVYPSSCEEAKRHTSGWAMRNTNNHNVHILKKSCLGVLVCSQRC 91

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
           VLP+GD VHLRPAICDKARKKQ GKPCPNR+C GRLE++ CRGHCGYPVTHFWRHT++ I
Sbjct: 92  VLPNGDEVHLRPAICDKARKKQQGKPCPNRQCLGRLEVLACRGHCGYPVTHFWRHTEHAI 151

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
           FFQAKG HDH RPEAKSTSEARRSLGAGRRVRGLAV+L RE A+G+K
Sbjct: 152 FFQAKGTHDHPRPEAKSTSEARRSLGAGRRVRGLAVILARETAMGSK 198

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007982|gb|EFA04430.1| hypothetical protein TcasGA2_TC014730 [Tribolium castaneum]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 164/223 (73%), Gaps = 45/223 (20%)

Query: 30  DWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEF 89
           DWDINDS IPR                                             + EF
Sbjct: 12  DWDINDSAIPR---------------------------------------------INEF 26

Query: 90  NSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPS 149
           +S+ EWADGHCR VY A +E+AKRH+SGWAMRNTNNHNVHILKKSCLGVLVCS RC L +
Sbjct: 27  DSFSEWADGHCRLVYRADNEDAKRHSSGWAMRNTNNHNVHILKKSCLGVLVCSLRCTLAN 86

Query: 150 GDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQA 209
           G+ VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+PCRGHCGYPVTHFWRHTD+ IFFQA
Sbjct: 87  GERVHLRPAICDKARKKQQGKPCPNRQCTGRLEILPCRGHCGYPVTHFWRHTDHAIFFQA 146

Query: 210 KGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
           KGVHDH RPEAKSTSEARRSLG+GRRVRGLAVLL +EAALGNK
Sbjct: 147 KGVHDHPRPEAKSTSEARRSLGSGRRVRGLAVLLAKEAALGNK 189

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706784|ref|XP_001949400.2| PREDICTED: hypothetical protein LOC100159717 [Acyrthosiphon pisum]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/253 (60%), Positives = 168/253 (66%), Gaps = 50/253 (19%)

Query: 5   IRRETGSPVMKSVLPYS-----PRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLIL 59
            ++E  +  M +   YS       S    ADWDINDS+IPR                   
Sbjct: 5   FKQEYENQSMSNEYSYSRGRPPAESISRIADWDINDSIIPR------------------- 45

Query: 60  EDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWA 119
                                     V  FN W+EWADGHCR VYP + EEAKRHASGWA
Sbjct: 46  --------------------------VNNFNLWEEWADGHCRLVYPPNCEEAKRHASGWA 79

Query: 120 MRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTG 179
           MRNTNNHNVHILKKSCLGVL+CSRRCVLPSGD+VHLRPAICDKARKKQ GKPCPNR+C G
Sbjct: 80  MRNTNNHNVHILKKSCLGVLLCSRRCVLPSGDTVHLRPAICDKARKKQQGKPCPNRQCHG 139

Query: 180 RLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGL 239
            LEIMPCRGHCGYPVTHFWRHT+Y IFFQAKGVHDHLRPEAKSTSEARRS G  R++R  
Sbjct: 140 HLEIMPCRGHCGYPVTHFWRHTEYAIFFQAKGVHDHLRPEAKSTSEARRSFGTSRKIRNF 199

Query: 240 AVLLTREAALGNK 252
            +LLTR+    NK
Sbjct: 200 GMLLTRDVPFNNK 212

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237867|ref|XP_975103.2| PREDICTED: similar to AGAP007783-PA [Tribolium castaneum]

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 164/223 (73%), Gaps = 45/223 (20%)

Query: 30  DWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEF 89
           DWDINDS IPR                                             + EF
Sbjct: 29  DWDINDSAIPR---------------------------------------------INEF 43

Query: 90  NSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPS 149
           +S+ EWADGHCR VY A +E+AKRH+SGWAMRNTNNHNVHILKKSCLGVLVCS RC L +
Sbjct: 44  DSFSEWADGHCRLVYRADNEDAKRHSSGWAMRNTNNHNVHILKKSCLGVLVCSLRCTLAN 103

Query: 150 GDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQA 209
           G+ VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+PCRGHCGYPVTHFWRHTD+ IFFQA
Sbjct: 104 GERVHLRPAICDKARKKQQGKPCPNRQCTGRLEILPCRGHCGYPVTHFWRHTDHAIFFQA 163

Query: 210 KGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
           KGVHDH RPEAKSTSEARRSLG+GRRVRGLAVLL +EAALGNK
Sbjct: 164 KGVHDHPRPEAKSTSEARRSLGSGRRVRGLAVLLAKEAALGNK 206

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024441|gb|EGI64639.1| Transcription factor glial cells missing [Acromyrmex echinatior]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/243 (61%), Positives = 166/243 (68%), Gaps = 45/243 (18%)

Query: 10  GSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMST 69
           GSP M + +  + +      +WDINDS +PR                             
Sbjct: 8   GSPTMSATVAGNQQQHHPHQEWDINDSNVPR----------------------------- 38

Query: 70  LGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVH 129
                           V E++SW EWADGH R VY    EEA+RHASGWAMRNTNNHNV 
Sbjct: 39  ----------------VVEYDSWCEWADGHVRRVYGPDCEEARRHASGWAMRNTNNHNVS 82

Query: 130 ILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGH 189
           ILKKSCLGVLVCS+ C+LP G  VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+ CRGH
Sbjct: 83  ILKKSCLGVLVCSQECILPGGGRVHLRPAICDKARKKQQGKPCPNRQCTGRLEILSCRGH 142

Query: 190 CGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAAL 249
           CGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAVLL REAAL
Sbjct: 143 CGYPVTHFWRHTEHAIFFQAKGQHDHPRPEAKSTSEARRSVGAGRRVRGLAVLLAREAAL 202

Query: 250 GNK 252
           G+K
Sbjct: 203 GSK 205

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211945|gb|EFN87857.1| Transcription factor glial cells missing [Harpegnathos saltator]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/248 (60%), Positives = 166/248 (66%), Gaps = 45/248 (18%)

Query: 5   IRRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKV 64
            R   GSP M + +  + +      +WDINDS +PR                        
Sbjct: 105 TRSRVGSPTMSATVAGNQQQQHPHQEWDINDSNVPR------------------------ 140

Query: 65  VNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTN 124
                                V E++ W EWADGH R VY    EEA++HASGWAMRNTN
Sbjct: 141 ---------------------VVEYDPWCEWADGHVRRVYGPDCEEARKHASGWAMRNTN 179

Query: 125 NHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIM 184
           NHNV ILKKSCLGVLVCS+ C+LP G  VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+
Sbjct: 180 NHNVAILKKSCLGVLVCSQECILPGGGRVHLRPAICDKARKKQQGKPCPNRQCTGRLEIL 239

Query: 185 PCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLT 244
            CRGHCGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAVLLT
Sbjct: 240 SCRGHCGYPVTHFWRHTEHAIFFQAKGQHDHPRPEAKSTSEARRSVGAGRRVRGLAVLLT 299

Query: 245 REAALGNK 252
           REAALG K
Sbjct: 300 REAALGTK 307

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497415|ref|XP_001599776.2| PREDICTED: hypothetical protein LOC100114913 [Nasonia vitripennis]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 165/247 (66%), Gaps = 45/247 (18%)

Query: 6   RRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVV 65
           R   GSP M + +  + +      +WDINDS +P+                         
Sbjct: 14  RSRVGSPTMSATVAGNQQQQYPHQEWDINDSNVPK------------------------- 48

Query: 66  NMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNN 125
                               V E+ +W EWADGH R VYPA  EEA+RHASGWAMRNTNN
Sbjct: 49  --------------------VVEYEAWSEWADGHVRKVYPADCEEARRHASGWAMRNTNN 88

Query: 126 HNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMP 185
           HNV ILKKSCLGVL CS +CVLP G  VHLRPAICDKARKKQ GKPCPNR CTGRL+I  
Sbjct: 89  HNVSILKKSCLGVLECSLKCVLPGGGRVHLRPAICDKARKKQQGKPCPNRLCTGRLQIHA 148

Query: 186 CRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTR 245
           CRGHCGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAV+L R
Sbjct: 149 CRGHCGYPVTHFWRHTEHAIFFQAKGSHDHPRPEAKSTSEARRSVGAGRRVRGLAVILAR 208

Query: 246 EAALGNK 252
           EAALG+K
Sbjct: 209 EAALGSK 215

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787252|ref|XP_393815.3| PREDICTED: hypothetical protein LOC410334 [Apis mellifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 165/247 (66%), Gaps = 45/247 (18%)

Query: 6   RRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVV 65
           R   GSP M + +  + +      +WDINDS +PR                         
Sbjct: 14  RSRVGSPTMSATVAGNQQQQHPHQEWDINDSNVPR------------------------- 48

Query: 66  NMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNN 125
                               V E++ W EWADGH R VY    EEA+RHASGWAMRNTNN
Sbjct: 49  --------------------VVEYDPWCEWADGHVRRVYGPDCEEARRHASGWAMRNTNN 88

Query: 126 HNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMP 185
           HNV ILKKSCLGVLVCS+ C+LP G  VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+ 
Sbjct: 89  HNVSILKKSCLGVLVCSQECILPGGGRVHLRPAICDKARKKQQGKPCPNRQCTGRLEILS 148

Query: 186 CRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTR 245
           CRGHCGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAVLL  
Sbjct: 149 CRGHCGYPVTHFWRHTEHAIFFQAKGQHDHPRPEAKSTSEARRSVGAGRRVRGLAVLLAN 208

Query: 246 EAALGNK 252
           EAALG+K
Sbjct: 209 EAALGSK 215

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864687|ref|XP_003707809.1| PREDICTED: uncharacterized protein LOC100876634 [Megachile rotundata]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/243 (60%), Positives = 164/243 (67%), Gaps = 45/243 (18%)

Query: 10  GSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMST 69
           GSP M + +  + +      +WDINDS +PR                             
Sbjct: 8   GSPTMSATVAGNQQQQHPHQEWDINDSNVPR----------------------------- 38

Query: 70  LGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVH 129
                           V E++ W EWADGH R VY    EEA+RHASGWAMRNTNNHNV 
Sbjct: 39  ----------------VVEYDPWCEWADGHVRRVYGPDCEEARRHASGWAMRNTNNHNVS 82

Query: 130 ILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGH 189
           ILKKSCLGVLVCS+ C+LP G  VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+ CRGH
Sbjct: 83  ILKKSCLGVLVCSQECILPGGGRVHLRPAICDKARKKQQGKPCPNRQCTGRLEILSCRGH 142

Query: 190 CGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAAL 249
           CGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAVLL  EAAL
Sbjct: 143 CGYPVTHFWRHTEHAIFFQAKGQHDHPRPEAKSTSEARRSVGAGRRVRGLAVLLANEAAL 202

Query: 250 GNK 252
           G+K
Sbjct: 203 GSK 205

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404736|ref|XP_003487203.1| PREDICTED: hypothetical protein LOC100746411 [Bombus impatiens]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 146/247 (59%), Positives = 165/247 (66%), Gaps = 45/247 (18%)

Query: 6   RRETGSPVMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVV 65
           R   GSP M + +  + +      +WDINDS +P+                         
Sbjct: 8   RSRVGSPTMSATVAGNQQQQHPHQEWDINDSNVPK------------------------- 42

Query: 66  NMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNN 125
                               V E++ W EWADGH R VY    EEA+RHASGWAMRNTNN
Sbjct: 43  --------------------VVEYDPWCEWADGHVRRVYGPECEEARRHASGWAMRNTNN 82

Query: 126 HNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMP 185
           HNV ILKKSCLGVL+CS+ C+LP G  VHLRPAICDKARKKQ GKPCPNR+CTGRLEI+ 
Sbjct: 83  HNVSILKKSCLGVLICSQECILPGGGRVHLRPAICDKARKKQQGKPCPNRQCTGRLEILS 142

Query: 186 CRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTR 245
           CRGHCGYPVTHFWRHT++ IFFQAKG HDH RPEAKSTSEARRS+GAGRRVRGLAVLL  
Sbjct: 143 CRGHCGYPVTHFWRHTEHAIFFQAKGQHDHPRPEAKSTSEARRSVGAGRRVRGLAVLLAN 202

Query: 246 EAALGNK 252
           EAALG+K
Sbjct: 203 EAALGSK 209

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
FB|FBgn0014179	504	gcm "glial cells missing" [Dro	0.654	0.331	0.706	6.8e-71
FB|FBgn0019809	613	gcm2 "gcm2" [Drosophila melano	0.592	0.246	0.666	1.6e-61
UNIPROTKB|Q5TLZ7	493	Gcm-2 "Transcription factor Gl	0.580	0.300	0.622	1.8e-54
ZFIN|ZDB-GENE-050127-1	496	gcm2 "glial cells missing homo	0.549	0.282	0.647	1.6e-53
UNIPROTKB|E1BJ35	489	GCM2 "Uncharacterized protein"	0.545	0.284	0.659	6.9e-53
UNIPROTKB|Q5TLZ4	481	gcm2 "Transcription factor Gli	0.549	0.291	0.661	8.7e-53
UNIPROTKB|O75603	506	GCM2 "Chorion-specific transcr	0.545	0.274	0.652	1.8e-52
UNIPROTKB|Q5TLZ5	490	Gcm-2 "Transcription factor Gl	0.556	0.289	0.625	2.3e-52
UNIPROTKB|E2RN97	506	GCM2 "Uncharacterized protein"	0.556	0.280	0.645	3.7e-52
MGI|MGI:1861438	504	Gcm2 "glial cells missing homo	0.552	0.279	0.643	4.8e-52

FB|FBgn0014179 gcm "glial cells missing" [Drosophila melanogaster (taxid:7227)]

 Score = 678 (243.7 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 118/167 (70%), Positives = 138/167 (82%)

Query:    86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
             V EF+ + +W++GHCR +Y   S+EA++HASGWAMRNTNNHNV+ILKKSCLGVL+CS +C
Sbjct:    44 VGEFDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKC 103

Query:   146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
              LP+G SVHLRPAICDKAR+KQ GK CPNR C GRLEI  CRGHCGYPVTHFWR    GI
Sbjct:   104 KLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTHFWRRDGNGI 163

Query:   206 FFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
             +FQAKG HDH RPEAK ++EARR L  GRRVR LAV+L RE+AL +K
Sbjct:   164 YFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAVMLARESALSDK 210

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IGI;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003677 "DNA binding" evidence=NAS;IDA

GO:0007516 "hemocyte development" evidence=NAS;TAS

GO:0006952 "defense response" evidence=NAS

GO:0042387 "plasmatocyte differentiation" evidence=IMP;NAS;TAS

GO:0042063 "gliogenesis" evidence=IGI;IMP

GO:0030097 "hemopoiesis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=TAS

GO:0035164 "embryonic plasmatocyte differentiation" evidence=TAS

GO:0035169 "lymph gland plasmatocyte differentiation" evidence=TAS

GO:0042690 "negative regulation of crystal cell differentiation" evidence=IMP

GO:0035165 "embryonic crystal cell differentiation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IMP

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0045687 "positive regulation of glial cell differentiation" evidence=IMP

FB|FBgn0019809 gcm2 "gcm2" [Drosophila melanogaster (taxid:7227)]

 Score = 598 (215.6 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 104/156 (66%), Positives = 125/156 (80%)

Query:    88 EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
             EF+ + EW+DGH R +Y   +EEAK+H SGWAMRNTNNHNV+ILKKSCLGVLVCS+ C L
Sbjct:    88 EFDEFNEWSDGHVRHIYSLHNEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTL 147

Query:   148 PSGDSVHLRPAICDKARKKQTGKPCPNRKCTG-RLEIMPCRGHCGYPVTHFWRHTDYGIF 206
             P+G  ++LRPAICDKAR+KQ GK CPN+ C G RLEI PCRGHCGYPVTHFWRH+   IF
Sbjct:   148 PNGSKINLRPAICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF 207

Query:   207 FQAKGVHDHLRPEAKSTSEARRSLG----AGRRVRG 238
             FQAKGVHDHLRP+ K++S ++R+ G    AG+   G
Sbjct:   208 FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANG 243

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;IDA

GO:0042063 "gliogenesis" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=NAS

GO:0010001 "glial cell differentiation" evidence=IGI;IMP

GO:0042387 "plasmatocyte differentiation" evidence=IEP;IMP;TAS

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0003677 "DNA binding" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0035164 "embryonic plasmatocyte differentiation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0042690 "negative regulation of crystal cell differentiation" evidence=IMP

GO:0035165 "embryonic crystal cell differentiation" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

UNIPROTKB|Q5TLZ7 Gcm-2 "Transcription factor Glial cells missing-2" [Neoceratodus forsteri (taxid:7892)]

 Score = 535 (193.4 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 94/151 (62%), Positives = 114/151 (75%)

Query:    86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
             + +F+ +QEW DG+ R++Y +  + A+RH SGWAMRNTNNHN  ILKKSCLGV+VC+R C
Sbjct:    35 IKQFDQFQEWTDGYVRYIYSSDDKNAQRHLSGWAMRNTNNHNCQILKKSCLGVVVCNRNC 94

Query:   146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
              LP G  + LRPAICDKAR+KQ  K CPN  C   LE++PCRGH GYPVT+FWR     I
Sbjct:    95 TLPDGSKLQLRPAICDKARQKQQKKACPN--CNSALELIPCRGHSGYPVTNFWRQDSKAI 152

Query:   206 FFQAKGVHDHLRPEAKSTSEARRSLGAGRRV 236
             FFQAKGVHDH RPE+KS +EARRS    RR+
Sbjct:   153 FFQAKGVHDHPRPESKSETEARRS-AVKRRI 182

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0030643 "cellular phosphate ion homeostasis" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0060017 "parathyroid gland development" evidence=ISS

ZFIN|ZDB-GENE-050127-1 gcm2 "glial cells missing homolog 2 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 524 (189.5 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 92/142 (64%), Positives = 111/142 (78%)

Query:    88 EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
             +++++QEW DG+ R++Y +  + A+RH SGWAMRNTNNHN  ILKKSCLGV+VCSR C L
Sbjct:    36 QYDAFQEWTDGYVRYIYSSEDKNAQRHLSGWAMRNTNNHNCQILKKSCLGVVVCSRNCSL 95

Query:   148 PSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFF 207
             P G  + LRPAICDKAR+KQ  K CPN  C   LE++PCRGH GYPVT+FWR     IFF
Sbjct:    96 PDGSKLQLRPAICDKARQKQQKKLCPN--CNSALELIPCRGHSGYPVTNFWRVDGKAIFF 153

Query:   208 QAKGVHDHLRPEAKSTSEARRS 229
             QAKGVHDH RPE+KS +EARRS
Sbjct:   154 QAKGVHDHPRPESKSETEARRS 175

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=IMP

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|E1BJ35 GCM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 521 (188.5 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 93/141 (65%), Positives = 110/141 (78%)

Query:    89 FNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLP 148
             F+ + EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC++ C LP
Sbjct:    36 FDRFCEWPDGYVRFIYSSDEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCAQDCALP 95

Query:   149 SGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQ 208
              G  + LRPAICDKAR KQ  KPCPN  C   LE++PCRGH GYPVT+FWR     IFFQ
Sbjct:    96 DGSRLQLRPAICDKARLKQQKKPCPN--CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQ 153

Query:   209 AKGVHDHLRPEAKSTSEARRS 229
             AKGVHDH RPE+KS +EARRS
Sbjct:   154 AKGVHDHPRPESKSETEARRS 174

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030643 "cellular phosphate ion homeostasis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5TLZ4 gcm2 "Transcription factor Glial cells missing-2" [Xenopus laevis (taxid:8355)]

 Score = 519 (187.8 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 94/142 (66%), Positives = 109/142 (76%)

Query:    88 EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
             +F+S+QEW DG+ RF+Y A  + A+RH SGWAMRNTNNHN  ILKKSCLGV+VCSR C L
Sbjct:    30 QFDSFQEWTDGYVRFIYNAEDKNAQRHLSGWAMRNTNNHNCQILKKSCLGVVVCSRNCTL 89

Query:   148 PSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFF 207
               G    LRPAICDKAR+KQ  K C N  C+  LE++PCRGH GYPVT+FWR     IFF
Sbjct:    90 LDGSKFQLRPAICDKARQKQQRKMCSN--CSSALELIPCRGHSGYPVTNFWRVDGKAIFF 147

Query:   208 QAKGVHDHLRPEAKSTSEARRS 229
             QAKGVHDH RPE+KS +EARRS
Sbjct:   148 QAKGVHDHPRPESKSETEARRS 169

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0030643 "cellular phosphate ion homeostasis" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0060017 "parathyroid gland development" evidence=ISS

UNIPROTKB|O75603 GCM2 "Chorion-specific transcription factor GCMb" [Homo sapiens (taxid:9606)]

 Score = 519 (187.8 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 92/141 (65%), Positives = 110/141 (78%)

Query:    89 FNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLP 148
             F+ ++EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC++ C LP
Sbjct:    35 FDQFREWPDGYVRFIYSSDEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLP 94

Query:   149 SGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQ 208
              G  + LRPAICDKAR KQ  K CPN  C   LE++PCRGH GYPVT+FWR     IFFQ
Sbjct:    95 DGSRLQLRPAICDKARLKQQKKACPN--CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQ 152

Query:   209 AKGVHDHLRPEAKSTSEARRS 229
             AKGVHDH RPE+KS +EARRS
Sbjct:   153 AKGVHDHPRPESKSETEARRS 173

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0007275 "multicellular organismal development" evidence=NAS

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0060017 "parathyroid gland development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0030643 "cellular phosphate ion homeostasis" evidence=IMP

GO:0003677 "DNA binding" evidence=TAS

UNIPROTKB|Q5TLZ5 Gcm-2 "Transcription factor Glial cells missing-2" [Scyliorhinus canicula (taxid:7830)]

 Score = 512 (185.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 90/144 (62%), Positives = 111/144 (77%)

Query:    86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
             V +F+++QEW DG+ R++Y A  + A+RH SGWAMRNTNNHN  ILKKSCLGV++C+R C
Sbjct:    33 VKQFDTFQEWTDGYVRYIYTADDKNAQRHLSGWAMRNTNNHNCQILKKSCLGVVICARNC 92

Query:   146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
              LP+G  + LRPAICDKAR+KQ  + CPN  C   LE++ CRGH G PVT+FWR     I
Sbjct:    93 TLPNGSKLQLRPAICDKARQKQQKRVCPN--CNSALELISCRGHSGDPVTNFWRLDTKSI 150

Query:   206 FFQAKGVHDHLRPEAKSTSEARRS 229
             FFQAKGVHDH RPE+KS +EARRS
Sbjct:   151 FFQAKGVHDHPRPESKSETEARRS 174

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0030643 "cellular phosphate ion homeostasis" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0060017 "parathyroid gland development" evidence=ISS

UNIPROTKB|E2RN97 GCM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 518 (187.4 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 93/144 (64%), Positives = 110/144 (76%)

Query:    86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
             +  F+ + EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC+R C
Sbjct:    32 LAHFDHFCEWPDGYVRFIYRSDEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCARAC 91

Query:   146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
              LP G  + LRPAICDKAR KQ  K CPN  C   LE++PCRGH GYPVT+FWR     I
Sbjct:    92 TLPDGSRLQLRPAICDKARLKQQKKACPN--CHSTLELIPCRGHSGYPVTNFWRLDGNAI 149

Query:   206 FFQAKGVHDHLRPEAKSTSEARRS 229
             FFQAKGVHDH RPE+KS +EARRS
Sbjct:   150 FFQAKGVHDHPRPESKSETEARRS 173

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030643 "cellular phosphate ion homeostasis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1861438 Gcm2 "glial cells missing homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 514 (186.0 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 92/143 (64%), Positives = 109/143 (76%)

Query:    87 TEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCV 146
             T F+ ++EW DG+ RF+Y +  ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC+R C 
Sbjct:    33 THFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCARACA 92

Query:   147 LPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIF 206
             L  G  + LRPAICDKAR KQ  K CPN  C   LE++PCRGH GYPVT+FWR     IF
Sbjct:    93 LKDGSHLQLRPAICDKARLKQQKKACPN--CHSPLELVPCRGHSGYPVTNFWRLDGNAIF 150

Query:   207 FQAKGVHDHLRPEAKSTSEARRS 229
             FQAKGVHDH RPE+KS +E RRS
Sbjct:   151 FQAKGVHDHPRPESKSETEGRRS 173

GO:0003677 "DNA binding" evidence=ISA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO;ISS

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IMP

GO:0030643 "cellular phosphate ion homeostasis" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=ISO;ISS

GO:0071310 "cellular response to organic substance" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q27403	GCM_DROME	No assigned EC number	0.7065	0.6549	0.3313	yes	N/A
O09102	GCM2_MOUSE	No assigned EC number	0.6433	0.5529	0.2797	yes	N/A
O75603	GCM2_HUMAN	No assigned EC number	0.6524	0.5450	0.2747	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	255
pfam03615	143	pfam03615, GCM, GCM motif protein	3e-90

>gnl|CDD|112433 pfam03615, GCM, GCM motif protein

 Score =  262 bits (672), Expect = 3e-90
 Identities = 100/143 (69%), Positives = 121/143 (84%)

Query: 88  EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
           +++ + EW+DGH R +Y +  + A++H SGWAMRNTNNHNV+ILKKSCLGVLVCSR C L
Sbjct: 1   KYDDFNEWSDGHVRHIYSSEDDNARKHLSGWAMRNTNNHNVNILKKSCLGVLVCSRDCKL 60

Query: 148 PSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFF 207
           P+G  ++LRPAICDKAR+KQ GK CPNR C GRLE++PCRGHCGYPVTHFWRH    IFF
Sbjct: 61  PNGSKINLRPAICDKARRKQQGKQCPNRGCNGRLELIPCRGHCGYPVTHFWRHDGNAIFF 120

Query: 208 QAKGVHDHLRPEAKSTSEARRSL 230
           QAKGVHDH RPE+K++SEARR+L
Sbjct: 121 QAKGVHDHPRPESKTSSEARRAL 143

Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF03615	143	GCM: GCM motif protein; InterPro: IPR003902 GCM tr	100.0

>PF03615 GCM: GCM motif protein; InterPro: IPR003902 GCM transcription factors are a family of proteins which contain a GCM motif

Probab=100.00  E-value=6.7e-99  Score=623.63  Aligned_cols=143  Identities=77%  Similarity=1.417  Sum_probs=90.7

Q ss_pred             ccccccccCCCceeEEecCCcHHHHhcccccccccCCCcccceeecccceEEEecCCcccCCCCeeeechhhhHHHHhhh
Q psy423           88 EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQ  167 (255)
Q Consensus        88 ~~D~F~EWpDG~vr~iY~~~~~~ArrH~SGWAMRNTNNHN~~ILKKSCLGVlvCS~~C~lp~G~ki~LRPAICDKAR~KQ  167 (255)
                      +||+|+||||||||+||++++++||||+||||||||||||++|||||||||||||++|++|+|.+|+||||||||||+||
T Consensus         1 ~~D~f~eW~dG~~r~iy~~~~~~ArrH~SgWAMRnTnNHn~~ilKKsCLGVl~Cs~~C~~~~g~~i~lRPAicdkAR~KQ   80 (143)
T PF03615_consen    1 EFDEFNEWPDGHVRRIYSASDKEARRHLSGWAMRNTNNHNVRILKKSCLGVLVCSQDCALPNGEKIHLRPAICDKARKKQ   80 (143)
T ss_dssp             ------SS--SS-EE--BTT-HHHHTT--SS-EEEE--S-TT-EEEEE--EEEETT----SSS---EE---SSHHHHHHH
T ss_pred             CCcccccCCCCcEEEEecccCHhHhhhcccceeecCCCCcceeeeeeeeeEEEeCCCccCCCCCEEEechHHhHHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcceeeeeccCCCCCccceEEEEeCCEEEEeecccCCCCCCCCcchHHHHHhh
Q psy423          168 TGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSL  230 (255)
Q Consensus       168 qgK~CPN~~C~G~Lel~pCRGH~GYPVThFWRh~g~aIfFQaKG~HDHpRPe~K~~~EaRrs~  230 (255)
                      |+|+|||++|+|+|+++||||||||||||||||+|++|||||||+|||||||+|+++||||++
T Consensus        81 q~k~Cpn~~C~g~L~~~pCrGh~GYPVThFWr~~~~~IfFQaKG~HDHpRPe~K~~~earr~~  143 (143)
T PF03615_consen   81 QGKPCPNRNCKGRLELIPCRGHCGYPVTHFWRHDGNAIFFQAKGVHDHPRPEAKSEAEARRSL  143 (143)
T ss_dssp             HHSB-SS--S--BEEEE---TBTTB--EEEEEE-SSBEEEEEE----S-----HHHHHHHHS-
T ss_pred             cCCCCCccccCCceeEEeccCcCCCceeEEEecCCCEEEEEcccccCCCCCCccchhhHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999985

The GCM motif is a domain that has been identified in proteins belonging to a family of transcriptional regulators involved in fundamental developmental processes which comprise Drosophila melanogaster GCM and its mammalian homologs [, , , ]. IN GCM transcription factors the N-terminal moiety contains a DNA-binding domain of 150 residues. Sequence conservation is highest in this GCM domain. In contrast, the C-terminal moiety contains one or two transactivating regions and is only poorly conserved. The GCM motif has been shown to be a DNA binding domain that recognises preferentially the nonpalindromic octamer 5'-ATGCGGGT-3' [, , ]. The GCM motif contains many conserved basic amino acid residues, seven cysteine residues, and four histidine residues []. The conserved cysteines are involved in shaping the overall conformation of the domain, in the process of DNA binding and in the redox regulation of DNA binding []. The GCM domain as a new class of Zn-containing DNA-binding domain with no similarity to any other DNA-binding domain []. The GCM domain consists of a large and a small domain tethered together by one of the two Zn ions present in the structure. The large and the small domains comprise five- and three-stranded beta-sheets, respectively, with three small helical segments packed against the same side of the two beta-sheets. The GCM domain exercises a novel mode of sequence-specific DNA recognition, where the five-stranded beta-pleated sheet inserts into the major groove of the DNA. Residues protruding from the edge strand of the beta-pleated sheet and the following loop and strand contact the bases and backbone of both DNA strands, providing specificity for its DNA target site. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ODH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
1odh_A	174	Structure Of The Gcm Domain Bound To Dna Length = 1		8e-46

>pdb|1ODH|A Chain A, Structure Of The Gcm Domain Bound To Dna Length = 174

Iteration: 1
 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 102/139 (73%), Gaps = 2/139 (1%)
Query: 92  WQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGD 151
           +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C    G 
Sbjct: 33  FQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGR 92
Query: 152 SVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKG 211
            ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    IFFQ+KG
Sbjct: 93  KIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG 150
Query: 212 VHDHLRPEAKSTSEARRSL 230
            HDH RPE K  +EARR++
Sbjct: 151 EHDHPRPETKLEAEARRAM 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1odh_A	174	MGCM1; transcription factor/DNA, transcription fac	1e-72

>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1 Length = 174

 Score =  218 bits (557), Expect = 1e-72
 Identities = 84/146 (57%), Positives = 104/146 (71%), Gaps = 2/146 (1%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V   + +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C
Sbjct: 27  VKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDC 86

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
               G  ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    I
Sbjct: 87  STEEGRKIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFI 144

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLG 231
           FFQ+KG HDH RPE K  +EARR++ 
Sbjct: 145 FFQSKGEHDHPRPETKLEAEARRAMK 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1odh_A	174	MGCM1; transcription factor/DNA, transcription fac	100.0

>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1

Probab=100.00  E-value=4.5e-100  Score=644.62  Aligned_cols=168  Identities=54%  Similarity=0.979  Sum_probs=154.8

Q ss_pred             CCCcccCC-CCCccCCCCCcccccccchhhhhccchhhhhhcccccccccccccceeeecCCCceeeecccccccccCCC
Q psy423           20 YSPRSFRH-TADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADG   98 (255)
Q Consensus        20 ~~~~~~~~-~~~wdind~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~V~~~D~F~EWpDG   98 (255)
                      .++++.++ ..+|||||.++|.+                                            |.+||+|||||||
T Consensus         4 ~~~~~~~~~~~~wdiNd~~lp~~--------------------------------------------~~~~d~f~eWpdG   39 (174)
T 1odh_A            4 DDFDPEDKEILSWDINDVKLPQN--------------------------------------------VKTTDWFQEWPDS   39 (174)
T ss_dssp             ----------CCCCSSCSSCCCC--------------------------------------------CCCCCCCCSSCCS
T ss_pred             CCCCCcccccceeccCCcccCcc--------------------------------------------hhccchhhcCCCC
Confidence            34445555 58999999999997                                            3789999999999


Q ss_pred             ceeEEecCCcHHHHhcccccccccCCCcccceeecccceEEEecCCcccCCCCeeeechhhhHHHHhhhcCCCCCCCCCC
Q psy423           99 HCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCT  178 (255)
Q Consensus        99 ~vr~iY~~~~~~ArrH~SGWAMRNTNNHN~~ILKKSCLGVlvCS~~C~lp~G~ki~LRPAICDKAR~KQqgK~CPN~~C~  178 (255)
                      |||+||++++++||+|+||||||||||||++|||||||||||||++|+||+|.+|+||||||||||+|||+|.|||  |+
T Consensus        40 ~vr~iY~~~~~~a~rh~SgWAmRnTnnHn~~ilkKsCLGVlvCs~~C~~p~g~~i~lRPAicdkAR~KQq~k~Cpn--C~  117 (174)
T 1odh_A           40 YVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPN--CN  117 (174)
T ss_dssp             SCEECCBTTCHHHHTTCCSSCEEEECCSCTTCEEEEECCEEEETTCCCCSSSCCCEECCCSSHHHHHHHHHSBCSS--SC
T ss_pred             ceEEEecccccchhhcccceeEecCCCcchhhhhhccceEEEecCCcCCCCCCeeeechHHHHHHHHHhhcCCCCC--CC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             cceeeeeccCCCCCccceEEEEeCCEEEEeecccCCCCCCCCcchHHHHHhhcCC
Q psy423          179 GRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAG  233 (255)
Q Consensus       179 G~Lel~pCRGH~GYPVThFWRh~g~aIfFQaKG~HDHpRPe~K~~~EaRrs~~~~  233 (255)
                      |+|+++||||||||||||||||+|++|||||||+|||||||+|+++||||++++.
T Consensus       118 g~L~~~~Crgh~GyPVThFWrh~~~~ifFqaKG~HDHpRPe~k~~~earr~~~~~  172 (174)
T 1odh_A          118 GPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARRAMKKV  172 (174)
T ss_dssp             CBEEEECCCTBTTBCCEEEEEECSSBEEEEEECCCCSCCCCCHHHHHHHHSCC--
T ss_pred             cceeeEeccCcCCCcceEEEEEcCCEEEEecccccCCCCCCCcccHHHHHHhHhh
Confidence            9999999999999999999999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1odha_	158	d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId:	2e-89

>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 158

class: Alpha and beta proteins (a+b)
fold: GCM domain
superfamily: GCM domain
family: GCM domain
domain: Mgcm1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  259 bits (663), Expect = 2e-89
 Identities = 84/146 (57%), Positives = 104/146 (71%), Gaps = 2/146 (1%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V   + +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C
Sbjct: 14  VKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDC 73

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
               G  ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    I
Sbjct: 74  STEEGRKIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFI 131

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLG 231
           FFQ+KG HDH RPE K  +EARR++ 
Sbjct: 132 FFQSKGEHDHPRPETKLEAEARRAMK 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1odha_	158	Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}	100.0

>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: GCM domain
superfamily: GCM domain
family: GCM domain
domain: Mgcm1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-99  Score=628.84  Aligned_cols=145  Identities=58%  Similarity=1.074  Sum_probs=142.3

Q ss_pred             ecccccccccCCCceeEEecCCcHHHHhcccccccccCCCcccceeecccceEEEecCCcccCCCCeeeechhhhHHHHh
Q psy423           86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARK  165 (255)
Q Consensus        86 V~~~D~F~EWpDG~vr~iY~~~~~~ArrH~SGWAMRNTNNHN~~ILKKSCLGVlvCS~~C~lp~G~ki~LRPAICDKAR~  165 (255)
                      |++||+|+||||||||+||++.+++||+|+||||||||||||++|||||||||||||++|++|||++|+||||||||||+
T Consensus        14 v~~~D~f~eWpdG~vr~iy~~~~~~A~rh~SgWAmRNtnnhN~~ilKKSCLGVlvCs~~C~lp~g~~~~lRPAicdkAR~   93 (158)
T d1odha_          14 VKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQ   93 (158)
T ss_dssp             CCCCCCCCSSCCSSCEECCBTTCHHHHTTCCSSCEEEECCSCTTCEEEEECCEEEETTCCCCSSSCCCEECCCSSHHHHH
T ss_pred             cccccccccCCCCceEEEcCcccchhcccccceeEecCCCCCceeecccceEEEEecCccCCCCCCeeeechHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcceeeeeccCCCCCccceEEEEeCCEEEEeecccCCCCCCCCcchHHHHHhhcC
Q psy423          166 KQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGA  232 (255)
Q Consensus       166 KQqgK~CPN~~C~G~Lel~pCRGH~GYPVThFWRh~g~aIfFQaKG~HDHpRPe~K~~~EaRrs~~~  232 (255)
                      |||+|+|||  |+|+|+++||||||||||||||||+|++||||+||+|||||||+|+++||||++.+
T Consensus        94 KQ~~k~Cpn--C~g~L~~~~Crgh~GypVthfWr~~~~~i~fqakG~HdHpRPe~k~~~earr~~~~  158 (158)
T d1odha_          94 KQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARRAMKK  158 (158)
T ss_dssp             HHHHSBCSS--SCCBEEEECCCTBTTBCCEEEEEECSSBEEEEEECCCCSCCCCCHHHHHHHHSCC-
T ss_pred             HHhcCCCCC--CCCceeEEeccCccCCcceEEEEEcCCEEEEecccccCCCCCCCCcchHHHHhhcC
Confidence            999999999  99999999999999999999999999999999999999999999999999999863