Psyllid ID: psy4242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHccccEEEEEEEEcccEEEEc
Coil and Loop (DISEMBL)
MMKKGNKELAREVFEYTVKSIKRIQIEKynkatsdeeresiildpYVIIDKAIENTKPILKLRSIKRAAVTYQM
Flexible Loop (DISEMBL)
mmkkgnkelaREVFEYTVKSikriqiekynkatsdeeresiildpyviidkaientkpilklrsikraavtyqm
Low Complexity Region (SEG)
MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Disordered region (IsUnstruct)
***********EVFEYTVKSIKRIQIEKYNK*******ESIILDPYVIIDKAIENTKPILKLRSIKRAA*****
Disordered Region (DISOPRED)
****GNKELAREVFEYTVKSIKRIQIE*************IILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Disordered Region (DISEMBL)
********LAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Disordered Region (DISPRO)
****GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q5ZMU0	233	28S ribosomal protein S7,	yes	N/A	0.986	0.313	0.472	4e-13
Q6DDY9	233	28S ribosomal protein S7,	N/A	N/A	0.986	0.313	0.486	4e-13
Q498Z6	228	28S ribosomal protein S7,	yes	N/A	0.986	0.320	0.445	4e-11
Q3T040	242	28S ribosomal protein S7,	yes	N/A	0.986	0.301	0.405	3e-09
Q80X85	242	28S ribosomal protein S7,	yes	N/A	0.986	0.301	0.418	4e-09
Q9VKX4	218	28S ribosomal protein S7,	yes	N/A	0.945	0.321	0.416	5e-09
Q5I0K8	242	28S ribosomal protein S7,	yes	N/A	0.986	0.301	0.418	5e-09
Q60R52	222	28S ribosomal protein S7,	N/A	N/A	0.959	0.319	0.430	5e-09
Q95Q11	222	28S ribosomal protein S7,	yes	N/A	0.959	0.319	0.402	3e-08
Q9Y2R9	242	28S ribosomal protein S7,	yes	N/A	0.986	0.301	0.405	5e-08

>sp|Q5ZMU0|RT07_CHICK 28S ribosomal protein S7, mitochondrial OS=Gallus gallus GN=MRPS7 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK LAR +   T+++IKR Q+EKY++A  D+E+E +  +PYVI  +A++N +PI+
Sbjct: 89  MMKDGNKVLARSLMAQTLENIKRKQLEKYHRA-PDDEKERVECNPYVIFHQALKNCQPII 147

Query: 61  KLRSIKRAAVTYQM 74
            L +I R   TYQ+
Sbjct: 148 GLSNITRGGKTYQV 161

Gallus gallus (taxid: 9031)

>sp|Q6DDY9|RT07_XENLA 28S ribosomal protein S7, mitochondrial OS=Xenopus laevis GN=mrps7 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK L+R +   T++ IKR Q+EKY KA  +EER SI  +PY I  +A+ N +PI+
Sbjct: 89  MMKGGNKNLSRSIMNQTLEQIKRTQLEKYYKA-PEEERASIECNPYTIFHQALHNCQPII 147

Query: 61  KLRSIKRAAVTYQM 74
            L SI R   +YQ+
Sbjct: 148 GLTSILRGGKSYQV 161

Xenopus laevis (taxid: 8355)

>sp|Q498Z6|RT07_DANRE 28S ribosomal protein S7, mitochondrial OS=Danio rerio GN=mrps7 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MM  GNK LAR +   T+++IKR Q+EKY+K+ +  +RE I  +PY I  +A+EN KP++
Sbjct: 84  MMYDGNKVLARGIMTQTLETIKRKQVEKYHKSPA-AKREEIECNPYAIFHQAMENCKPVI 142

Query: 61  KLRSIKRAAVTYQM 74
            L SI++    YQ+
Sbjct: 143 GLASIQKGGKFYQV 156

Danio rerio (taxid: 7955)

>sp|Q3T040|RT07_BOVIN 28S ribosomal protein S7, mitochondrial OS=Bos taurus GN=MRPS7 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK LAR +   T++++KR Q EKY+ A S EE+ ++  +PY I  +A++N +P++
Sbjct: 98  MMKGGNKILARSLMTQTLEAVKRKQFEKYH-AASAEEQATVERNPYTIFHQALKNCEPVI 156

Query: 61  KLRSIKRAAVTYQM 74
            L  I +    YQ+
Sbjct: 157 GLVPILKGGHFYQV 170

Bos taurus (taxid: 9913)

>sp|Q80X85|RT07_MOUSE 28S ribosomal protein S7, mitochondrial OS=Mus musculus GN=Mrps7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  +A++N +P++
Sbjct: 98  MMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYRIFHEALKNCEPVI 156

Query: 61  KLRSIKRAAVTYQM 74
            L  I +    YQ+
Sbjct: 157 GLVPILKGGHFYQV 170

Mus musculus (taxid: 10090)

>sp|Q9VKX4|RT07_DROME 28S ribosomal protein S7, mitochondrial OS=Drosophila melanogaster GN=mRpS7 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 3   KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
           KKGN  LAR +   T++ IKR Q E  N A    E+ +I  +P  ++ +A+EN +P+L++
Sbjct: 78  KKGNSALARTLLSKTLELIKRTQTEHMNLAKG--EKTTINTNPETLLKQAVENCRPLLQV 135

Query: 63  RSIKRAAVTYQM 74
            +IKR  VTYQ+
Sbjct: 136 TAIKRGGVTYQV 147

Drosophila melanogaster (taxid: 7227)

>sp|Q5I0K8|RT07_RAT 28S ribosomal protein S7, mitochondrial OS=Rattus norvegicus GN=Mrps7 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK LAR +   T++++KR Q EKY +A S EE+ +I  +PY I  +A+ N +P++
Sbjct: 98  MMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYKIFHEALRNCEPVI 156

Query: 61  KLRSIKRAAVTYQM 74
            L  I +    YQ+
Sbjct: 157 GLVPILKGGHFYQV 170

Rattus norvegicus (taxid: 10116)

>sp|Q60R52|RT07_CAEBR 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis briggsae GN=CBG21526 PE=3 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 3   KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
           K G KE +R+     ++ IKR Q + + KA +DEE++SI LDP+VI  K I+N  P++KL
Sbjct: 80  KDGEKETSRKNVLSALEIIKRRQYKAWTKA-NDEEKKSIELDPFVIARKGIKNCHPLMKL 138

Query: 63  RSIKRAAVTYQM 74
           + + R   TYQ+
Sbjct: 139 QGVTRGGTTYQV 150

Caenorhabditis briggsae (taxid: 6238)

>sp|Q95Q11|RT07_CAEEL 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis elegans GN=Y57G11C.34 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 3   KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
           K G KE +R+     ++ IKR Q + + KA S+EE++SI LDP+++  K I+N  P++KL
Sbjct: 80  KDGEKETSRKNVLSALEIIKRRQYKAWAKA-SEEEKKSIELDPFLVAKKGIKNCHPLMKL 138

Query: 63  RSIKRAAVTYQM 74
           + + R   TYQ+
Sbjct: 139 QGVTRGGTTYQV 150

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Y2R9|RT07_HUMAN 28S ribosomal protein S7, mitochondrial OS=Homo sapiens GN=MRPS7 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MM  GNK LAR +   T++++KR Q EKY+ A S EE+ +I  +PY I  +A++N +P++
Sbjct: 98  MMIGGNKVLARSLMIQTLEAVKRKQFEKYH-AASAEEQATIERNPYTIFHQALKNCEPMI 156

Query: 61  KLRSIKRAAVTYQM 74
            L  I +    YQ+
Sbjct: 157 GLVPILKGGRFYQV 170

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
240848991	231	mitochondrial ribosomal protein S7-like	1.0	0.320	0.513	3e-14
312381617	203	hypothetical protein AND_06035 [Anophele	1.0	0.364	0.5	2e-13
346465901	257	hypothetical protein [Amblyomma maculatu	0.986	0.284	0.5	3e-13
427792631	236	Putative ribosomal protein s7, partial [	1.0	0.313	0.445	1e-12
449283039	218	28S ribosomal protein S7, mitochondrial,	0.986	0.334	0.513	1e-12
157106466	226	mitochondrial ribosomal protein S7 [Aede	1.0	0.327	0.486	2e-12
357616719	238	mitochondrial ribosomal protein S7 [Dana	1.0	0.310	0.459	2e-12
332030762	153	28S ribosomal protein S7, mitochondrial	1.0	0.483	0.432	2e-12
332375662	233	unknown [Dendroctonus ponderosae]	1.0	0.317	0.432	4e-12
307195634	217	28S ribosomal protein S7, mitochondrial	1.0	0.341	0.418	6e-12

>gi|240848991|ref|NP_001155408.1| mitochondrial ribosomal protein S7-like [Acyrthosiphon pisum] gi|239790805|dbj|BAH71939.1| ACYPI000999 [Acyrthosiphon pisum]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 56/74 (75%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           M+ KG K+LAREV E T + IK++Q+EKYN+ T  E++ S+I+DP VI+ KA+ N+KP+L
Sbjct: 87  MLLKGQKKLAREVLEKTFEKIKKLQLEKYNRETDPEKKASMIIDPVVILKKAVANSKPLL 146

Query: 61  KLRSIKRAAVTYQM 74
           KL ++KR    YQ+
Sbjct: 147 KLTAVKRGGSFYQV 160

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381617|gb|EFR27326.1| hypothetical protein AND_06035 [Anopheles darlingi]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 55/74 (74%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +MK+GNKELAR + E   ++IKR+Q+E+Y+ A SDEER  I L+P  ++ +A+EN +P+L
Sbjct: 59  VMKQGNKELARGLVEKGFENIKRMQLERYHLAESDEERAKIELNPRKLLHQAVENCRPLL 118

Query: 61  KLRSIKRAAVTYQM 74
           +L  IKR  V YQ+
Sbjct: 119 QLTPIKRGGVRYQV 132

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465901|gb|AEO32795.1| hypothetical protein [Amblyomma maculatum]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 53/74 (71%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +M+KG K LARE  E  + ++KRIQ+ KYN+AT DEER  I  +P  I+ KA+EN +P++
Sbjct: 114 LMRKGEKALARENIELALFNVKRIQLAKYNRAT-DEERSQIECNPLTILHKALENCRPVM 172

Query: 61  KLRSIKRAAVTYQM 74
           +L  IKR  +TYQ+
Sbjct: 173 ELSPIKRGGITYQV 186

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792631|gb|JAA61767.1| Putative ribosomal protein s7, partial [Rhipicephalus pulchellus]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 52/74 (70%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +M+KG+K LARE  E  + ++KRIQ+ KYN+AT D+ +  +  +P  I+ KA+ N +P+L
Sbjct: 92  LMRKGDKALARENIELGLFNVKRIQLTKYNRATDDDTKRKVECNPVTILHKALANCRPVL 151

Query: 61  KLRSIKRAAVTYQM 74
           +L  IKR  +TYQ+
Sbjct: 152 ELSPIKRGGITYQV 165

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449283039|gb|EMC89742.1| 28S ribosomal protein S7, mitochondrial, partial [Columba livia]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           MMK GNK LAR +   T+++IKR Q+EKY+KA  D E+E+I  +PYVI  +A++N +PI+
Sbjct: 74  MMKNGNKVLARSLMSQTLEAIKRKQLEKYHKAPED-EKEAIECNPYVIFHQALKNCQPII 132

Query: 61  KLRSIKRAAVTYQM 74
            L SI R   TYQ+
Sbjct: 133 GLSSITRGGKTYQV 146

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157106466|ref|XP_001649336.1| mitochondrial ribosomal protein S7 [Aedes aegypti] gi|108879856|gb|EAT44081.1| AAEL004527-PA [Aedes aegypti]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 55/74 (74%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +MKKG K LARE+ E   ++IKR+Q+E+Y+ A S+EE+  I L+P  ++ KA+EN++P+L
Sbjct: 82  VMKKGEKVLARELVEKGFENIKRLQLERYHLAESEEEKAKIELNPRALLRKAVENSRPLL 141

Query: 61  KLRSIKRAAVTYQM 74
           +L  IKR  V YQ+
Sbjct: 142 QLTPIKRGGVRYQV 155

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616719|gb|EHJ70361.1| mitochondrial ribosomal protein S7 [Danaus plexippus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 55/74 (74%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +MK GNK+LAR + E   ++IKR QIE+Y+ A++ E++  I+L+P  ++ +A+EN KP+L
Sbjct: 94  VMKMGNKQLARSLVEKAFENIKRKQIERYHLASTPEDKAKILLNPKDVLHRAVENCKPLL 153

Query: 61  KLRSIKRAAVTYQM 74
           +L  IKR  +TYQ+
Sbjct: 154 QLLPIKRGGITYQV 167

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030762|gb|EGI70438.1| 28S ribosomal protein S7, mitochondrial [Acromyrmex echinatior]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 50/74 (67%)

Query: 1  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
          +MK GNK+L   +   T + +KRIQ+E+Y+KAT+ E +  I LDP+VI  +A++N  PIL
Sbjct: 9  LMKNGNKKLVTTLVMKTFEGVKRIQLERYHKATTSEAKAEIELDPFVIFHRAVDNCTPIL 68

Query: 61 KLRSIKRAAVTYQM 74
          +L    +  +TYQ+
Sbjct: 69 QLTCCSKGGITYQV 82

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375662|gb|AEE62972.1| unknown [Dendroctonus ponderosae]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 53/74 (71%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +M+ G K  AR++ E +++ +KRIQ+EK++K TS+E++  I LDP VI  +A+ N+ P+L
Sbjct: 88  LMRDGRKNFARQLVEKSLEQVKRIQLEKFHKCTSEEDKAKIELDPKVIFHRAVTNSMPLL 147

Query: 61  KLRSIKRAAVTYQM 74
           +L  +KR  V YQ+
Sbjct: 148 QLMPVKRGGVKYQV 161

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195634|gb|EFN77476.1| 28S ribosomal protein S7, mitochondrial [Harpegnathos saltator]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 53/74 (71%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
           +M+ GNK LA+++  Y  +++KRIQ+++Y+KAT +EE+E I LDP  +   A+ N  P+L
Sbjct: 73  IMRNGNKLLAKKLVTYAFENVKRIQLQRYHKATDEEEKEKIELDPVRVFHHALANCTPVL 132

Query: 61  KLRSIKRAAVTYQM 74
            L++ K+  +TYQ+
Sbjct: 133 YLKATKKGGITYQV 146

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
pfam00177	149	pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e	2e-05

>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 16/73 (21%)

Query: 1  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
          +MK G K LA ++    ++ I+    EK  K            +P  ++ +AIEN KP +
Sbjct: 30 LMKDGKKSLAEKIVYDALEIIE----EKTGK------------NPLEVLVQAIENVKPRV 73

Query: 61 KLRSIKRAAVTYQ 73
          +++S +    TYQ
Sbjct: 74 EVKSRRVGGATYQ 86

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
COG0049	148	RpsG Ribosomal protein S7 [Translation, ribosomal	99.92
TIGR01029	154	rpsG_bact ribosomal protein S7, bacterial/organell	99.88
TIGR01028	186	S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary	99.88
PRK04027	195	30S ribosomal protein S7P; Reviewed	99.88
PRK05302	156	30S ribosomal protein S7; Validated	99.87
CHL00053	155	rps7 ribosomal protein S7	99.86
PTZ00091	193	40S ribosomal protein S5; Provisional	99.85
PF00177	148	Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro:	99.82
KOG3291|consensus	208		99.79

>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=7.7e-26  Score=154.02  Aligned_cols=58  Identities=31%  Similarity=0.484  Sum_probs=56.8

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||+||||++|++|||.||++|.+++                ++||++||++||+|++|.+||+++|+||++|||
T Consensus        29 iM~~GKK~~A~~Ivy~Af~ii~~kT----------------g~~Piqvf~~Ai~N~~P~~Ev~srrvGGa~yqv   86 (148)
T COG0049          29 IMRDGKKSLAEKIVYGAFDIIEKKT----------------GQNPLQVFEKAIENVKPREEVKSRRVGGATYQV   86 (148)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHH----------------CCChHHHHHHHHHhcCchhheeeeeeCCeeeEe
Confidence            6999999999999999999999999                999999999999999999999999999999997

>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle

Probab=99.88  E-value=2.9e-23  Score=141.18  Aligned_cols=58  Identities=31%  Similarity=0.535  Sum_probs=56.3

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++|||+||++|+..+                +.||++||++||+||+|++||+++|+||++|||
T Consensus        28 lM~~GKK~~A~kI~~~al~~i~~~~----------------~~nPi~vl~~Ai~nv~P~~evk~~r~gG~~yqv   85 (154)
T TIGR01029        28 VMKDGKKSLAESIVYKAFERIAKKT----------------GEDPLEVFEQALENVKPLVEVKSRRVGGATYQV   85 (154)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHc----------------CCCHHHHHHHHHHhCCCCeeeEEeecCCEEEEE
Confidence            6999999999999999999999887                889999999999999999999999999999997

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.

>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic)

Probab=99.88  E-value=7.4e-23  Score=143.55  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=55.9

Q ss_pred             CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++    |||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        58 lM~~g~n~GKK~~A~kIv~~A~~iI~~~t----------------~~nPi~vl~~AI~N~~P~~ev~~~r~GG~~yqV  119 (186)
T TIGR01028        58 VMRSGRNNGKKLKAYRIVKEAFEIIEKRT----------------GENPIQVLVDAIENAGPREDTTRIGYGGIVYRQ  119 (186)
T ss_pred             HhccCcCCCcHHHHHHHHHHHHHHHHHHh----------------CCChHHHHHHHHHcCCCCeEEEEEecCCEEEEe
Confidence            5786    999999999999999999998                899999999999999999999999999999997

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.

>PRK04027 30S ribosomal protein S7P; Reviewed

Probab=99.88  E-value=8.6e-23  Score=144.11  Aligned_cols=58  Identities=24%  Similarity=0.400  Sum_probs=56.2

Q ss_pred             CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++    |||++|++|||+||++|+.++                +.||++||++||+|++|.+||+++|+||++|||
T Consensus        67 lM~~~~n~GKK~~A~~Iv~~AfeiI~~kT----------------~~nPiqVl~~AI~N~~P~~Ev~~~r~GG~tyqv  128 (195)
T PRK04027         67 LMRTERNTGKKQKAYNIVKEAFEIIEKRT----------------KQNPIQVLVDAIENAAPREETTRIKYGGISYPK  128 (195)
T ss_pred             HhccCccCCcHHHHHHHHHHHHHHHHHHH----------------CCCHHHHHHHHHHcCCCCeEEEEEecCCEEEEe
Confidence            5888    999999999999999999998                899999999999999999999999999999997

>PRK05302 30S ribosomal protein S7; Validated

Probab=99.87  E-value=7.9e-23  Score=139.28  Aligned_cols=58  Identities=29%  Similarity=0.502  Sum_probs=56.2

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++||++||++|+..+                +.||+.||++||+||+|++||+++|+||++|||
T Consensus        30 lmk~GKK~~A~kI~~~al~~I~~~~----------------~~npl~il~~Ai~nv~P~~evk~~r~gG~~~~v   87 (156)
T PRK05302         30 LMLDGKKSVAEKIVYGALDIIEEKT----------------GKDPLEVFEKALENVKPVVEVKSRRVGGATYQV   87 (156)
T ss_pred             HhhcccHHHHHHHHHHHHHHHHHHc----------------CCChHHHHHHHHHhCCCCeEEeeeccCCEEEEE
Confidence            6999999999999999999999887                899999999999999999999999999999997

>CHL00053 rps7 ribosomal protein S7

Probab=99.86  E-value=3.6e-22  Score=135.84  Aligned_cols=58  Identities=26%  Similarity=0.465  Sum_probs=56.2

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||++|++||++||++|+..+                +.||+++|++||+||+|++||+++|+||++|||
T Consensus        30 lm~~GKK~~A~kIv~~al~~i~~~~----------------~~npi~vl~~Ai~N~~P~~evk~~r~gG~~~qv   87 (155)
T CHL00053         30 ILKSGKKSLAYRIVYRALKKIQQKT----------------EKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQV   87 (155)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHc----------------CCCHHHHHHHHHHhCCCcEEEEEEeeCCEEEEE
Confidence            6999999999999999999999887                899999999999999999999999999999997

>PTZ00091 40S ribosomal protein S5; Provisional

Probab=99.85  E-value=1.3e-21  Score=137.92  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++    |||++|++|||+||++|..++                ++||++||++||+||+|.+|++++++||++|||
T Consensus        65 lM~~grn~GKK~~A~~IV~~AfeiI~~~t----------------~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqv  126 (193)
T PTZ00091         65 LMFHGRNNGKKLLAVRIVKHAFEIIHLLT----------------DKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQ  126 (193)
T ss_pred             HhccCccCCcHHHHHHHHHHHHHHHHHHH----------------CCChHHHHHHHHHhCCCCeeeEEeecCCeEEEE
Confidence            5888    999999999999999999988                899999999999999999999999999999996

>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.82  E-value=2.1e-20  Score=125.70  Aligned_cols=58  Identities=38%  Similarity=0.609  Sum_probs=55.1

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||++|++||++||+.|+.++                +.||+.||++||+||+|+++|+++++||.+|||
T Consensus        29 lmk~GkK~~A~~i~~~al~~i~~~~----------------~~npi~il~~Ai~n~~P~~~v~~~k~gg~~~~v   86 (148)
T PF00177_consen   29 LMKDGKKSKAEKIVYKALEIIKKKT----------------NKNPIQILKQAIENVKPLVEVRSIKKGGKTYQV   86 (148)
T ss_dssp             HHSTTBHHHHHHHHHHHHHHHHHHH----------------SSSHHHHHHHHHHHHS-SEEEEEEEETTEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHHHHhhccc----------------CCCHHHHHHHHHHHhccceeeeeeccCceeEEE
Confidence            5999999999999999999999887                889999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....

>KOG3291|consensus

Probab=99.79  E-value=8.5e-20  Score=129.92  Aligned_cols=58  Identities=38%  Similarity=0.591  Sum_probs=56.6

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||.+|++||+.||++|++.|                +.||++||++||+||.|++.++++.+||++|||
T Consensus        86 ~~~~GKK~~a~~Iv~~aleiI~~~t----------------~~NPiqvl~~AI~n~~P~~~~~~i~r~g~~~~v  143 (208)
T KOG3291|consen   86 IMKNGKKLLARRIVKHALEIIKRLT----------------ERNPIQVLVQAIENCGPLEDVTRIGRAGTTYQV  143 (208)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHh----------------cCCHHHHHHHHHHhcCchhhceeecccceEEEe
Confidence            5899999999999999999999999                999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	99.91
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	99.91
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	99.9
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	99.9
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	99.9
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	99.9
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	99.87
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	99.75
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	99.84
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	99.8

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...

Probab=99.91  E-value=5.5e-25  Score=148.81  Aligned_cols=58  Identities=31%  Similarity=0.533  Sum_probs=56.5

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||+||||
T Consensus        25 lM~~GKKs~A~~Iv~~a~~~i~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqv   82 (151)
T 1rss_A           25 IMRDGKKNLAARIFYDACKIIQEKT----------------GQEPLKVFKQAVENVKPRMEVRSRRVGGANYQV   82 (151)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEE
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeecCCEEEEE
Confidence            5999999999999999999999988                899999999999999999999999999999997

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1

Probab=99.91  E-value=6.6e-25  Score=148.98  Aligned_cols=58  Identities=24%  Similarity=0.460  Sum_probs=56.6

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||+||||
T Consensus        29 lM~~GKKs~A~~Iv~~a~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV   86 (155)
T 1hus_A           29 IMIDGKKSKAQKILYTAFDIIRERT----------------GKDPMEVFEQALKNVMPVLEVRARRVGGANYQV   86 (155)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEECCEETTEECCE
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeecCCEEEEE
Confidence            6999999999999999999999988                899999999999999999999999999999997

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}

Probab=99.90  E-value=5.1e-25  Score=148.65  Aligned_cols=58  Identities=29%  Similarity=0.499  Sum_probs=56.3

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        23 lM~~GKK~~A~~Iv~~a~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqv   80 (149)
T 3gty_S           23 VMWDGKKTIAQKIVYGAFDIIREKT----------------KKDPLEVFRQAVENVKPVLEVRPRRVGGATYQV   80 (149)
T ss_dssp             HCBTTBTTTHHHHHHHHHHHHHHTT----------------SSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEE
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEE
Confidence            5999999999999999999999887                899999999999999999999999999999997

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.90  E-value=7.5e-25  Score=148.77  Aligned_cols=58  Identities=24%  Similarity=0.420  Sum_probs=56.3

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||+||||
T Consensus        30 lM~~GKKs~A~~Iv~~a~~~i~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV   87 (155)
T 3bbn_G           30 ILKHGKKSLAYQILYRAVKKIQQKT----------------ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQV   87 (155)
T ss_dssp             SCCTTCHHHHHHHHSHHHHTTTTTC----------------SSCTTHHHHHHGGGTCCSEEECCEEETTEEECC
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHc----------------CCChHHHHHHHHHhCCCCeEEEEeccCCeEEEE
Confidence            7999999999999999999999877                899999999999999999999999999999997

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...

Probab=99.90  E-value=1.6e-24  Score=150.09  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++|||+||++|++++                +.||++||++||+||+|++||+++|+||+||||
T Consensus        30 lM~~GKKs~A~~Iv~~A~~~I~~kt----------------~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyqV   87 (179)
T 3i1m_G           30 LMVDGKKSTAESIVYSALETLAQRS----------------GKSELEAFEVALENVRPTVEVKSRRVGGSTYQV   87 (179)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCSHHHHHHHHHHHCCSEEEECCCCSSSCCCE
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEEE
Confidence            5999999999999999999999998                899999999999999999999999999999997

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T

Probab=99.87  E-value=1.3e-22  Score=142.54  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++    |||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        71 lM~~g~n~GKKs~A~~Iv~~A~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV  132 (200)
T 2xzm_G           71 LMFHGRNAGKKALCIKVVKNAFEIIHLVT----------------GRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQ  132 (200)
T ss_dssp             HSCSTTTCCCHHHHHHHHHHHHHHHHHHH----------------CSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEE
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeccCCEEEEE
Confidence            5899    999999999999999999998                899999999999999999999999999999997

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}

Probab=99.75  E-value=9.6e-23  Score=143.60  Aligned_cols=58  Identities=22%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++    |||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        76 lM~~g~n~GKKs~A~~Ivy~A~~~I~~kt----------------~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqV  137 (204)
T 2zkq_g           76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLT----------------GENPLQVLVNAIINSGPREDSTRIGRAGTVRRQ  137 (204)
Confidence            6999    999999999999999999887                889999999999999999999999999999997

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1

Probab=99.84  E-value=1.3e-21  Score=139.00  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|||++|++|||+||++|++++                +.||++||++||+||+|.++|+++|+||++|||
T Consensus        97 ~GKK~~A~~Iv~~Af~iI~~~t----------------~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqv  151 (218)
T 1iqv_A           97 NSKKVRAYEVVKEAFKIIEKRT----------------GKNPIQVLVWAIENAAPREDTTSVMFGGIRYHV  151 (218)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHH----------------SSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeccCCEEEEE
Confidence            9999999999999999999998                899999999999999999999999999999997

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F

Probab=99.80  E-value=3.4e-20  Score=132.19  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|||++|++|||+||++|+.++                +.||++||++||+||+|+++++++..||++|||
T Consensus       104 ~GKKs~A~~Ivy~AfeiI~~kT----------------~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqV  158 (225)
T 3u5c_F          104 NGKKLKAVRIIKHTLDIINVLT----------------DQNPIQVVVDAITNTGPREDTTRVGGGGAARRQ  158 (225)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTT----------------CSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCE
T ss_pred             CCcHHHHHHHHHHHHHHHHHhc----------------CCCceeHHHHHHHhCCCCeeEEEeccCCEEEEE
Confidence            4999999999999999999987                899999999999999999997777777999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d2qalg1	150	Ribosomal protein S7 {Escherichia coli [TaxId: 562	99.89
d1husa_	139	Ribosomal protein S7 {Bacillus stearothermophilus	99.89
d1rssa_	145	Ribosomal protein S7 {Thermus thermophilus [TaxId:	99.87
d1iqva_	201	Ribosomal protein S7 {Archaeon Pyrococcus horikosh	99.83

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.2e-24  Score=142.81  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        28 lM~~GKK~~A~~iv~~al~~i~~~t----------------~~~pi~vl~~AI~nv~P~~ev~~~r~gG~~yqv   85 (150)
T d2qalg1          28 LMVDGKKSTAESIVYSALETLAQRS----------------GKSELEAFEVALENVRPTVEVKSRRVGGSTYQV   85 (150)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHSCCSEEEEEEECSSSEEEE
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHhc----------------CCCcchHHHHHHHHhccceeEEeeeecccccee
Confidence            6999999999999999999999998                899999999999999999999999999999997

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=2.8e-24  Score=141.36  Aligned_cols=58  Identities=24%  Similarity=0.460  Sum_probs=56.5

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      +|++|||++|++|||+||++|+.++                +.||++||++||+||+|++||+++|+||++|||
T Consensus        21 lM~~GKK~~A~kiv~~al~~i~~~~----------------~~~pi~vl~~Ai~n~~P~~ev~~~r~GG~~yqv   78 (139)
T d1husa_          21 IMIDGKKSKAQKILYTAFDIIRERT----------------GKDPMEVFEQALKNVMPVLEVRARRVGGANYQV   78 (139)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEECCEETTEECCE
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhc----------------CCCcchHHHHHHHhhhhhhheeeeeeCccceEe
Confidence            6999999999999999999999998                899999999999999999999999999999997

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.3e-23  Score=136.74  Aligned_cols=58  Identities=31%  Similarity=0.533  Sum_probs=56.4

Q ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      ||++|||++|++||++||++|+.++                +.||+++|++||+||+|++||+++|+||++|||
T Consensus        19 lMk~GKK~~A~~iv~~al~~i~~~~----------------~~npi~vl~~Ai~n~~P~~evk~~r~gG~~~~v   76 (145)
T d1rssa_          19 IMRDGKKNLAARIFYDACKIIQEKT----------------GQEPLKVFKQAVENVKPRMEVRSRRVGGANYQV   76 (145)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEE
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHhc----------------cCccHHHHHHHHhccccccceeeeeeCCcceee
Confidence            6999999999999999999999888                899999999999999999999999999999997

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=2.4e-21  Score=134.36  Aligned_cols=57  Identities=25%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242           2 MKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM   74 (74)
Q Consensus         2 Mk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV   74 (74)
                      |++|||++|++|||+||++|+.++                +.||++||++||+||+|.+||+++|+||++|||
T Consensus        78 ~~~GKK~~A~kIv~~A~~iI~~kt----------------~~nPl~Vl~~AI~N~~P~~Ev~~~r~GG~~yqv  134 (201)
T d1iqva_          78 SLNSKKVRAYEVVKEAFKIIEKRT----------------GKNPIQVLVWAIENAAPREDTTSVMFGGIRYHV  134 (201)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHH----------------SSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEE
T ss_pred             cCCccHHHHHHHHHHHHHHHHHhh----------------CCChHHHHHHHHHhhcceEEEEEEecCCccccc
Confidence            567999999999999999999998                999999999999999999999999999999996