Psyllid ID: psy4272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
MLPRAGVSPPGVSSEDSKTSPQNRKISPSKGVPSLLPMKDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHKKHEQPRKESSYKETENTQFNSETNDLSKLEEPNKTSSILLAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQSAPADTSAPNTHMKSFEEFIREHYERSAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHLPVPSVPPLLAGALPPGQVEKLNDLYENERNMLIQELIRKKLGLLIQNNQNGGHAEDAPTDLSRKLKSDMEEDEAVKEETEEEEDSA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHccccccHccccccccccccEEEEccccccccccEEEEccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHcccccccccccccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEccccccccccccccHHHHHHccHHHHHHHHHcccHHcccc
Coil and Loop (DISEMBL)
mlpragvsppgvssedsktspqnrkispskgvpsllpmkdirtsdpdwprptasFAATIADVATKTLPVIQELlsqrdgkpvgkatlpsplkakLSDYENKMKNVRESIRQKRLAQgltclqcgrsycrpynlkrhiqyecgkapqfpclycsyrarhkhdlkkhvtfkHAAYLDHFQAVQEELEVTtkelspgpkaenRHRFREFLNEHRnlernvsheeirthkkheqprkessyketentqfnsetndlskleepnktSSILLAHLQQVQKDlglgasdslssekdipsnldlsqipkpppssshtysnqIHKNLLQCntgrfrqvysshQIVELEKefrltnylpsdrrKVLSKELGLTERQIKIWFQNRRmklkrthpDMVVEYVKESSEArsasqktnhqsapadtsapnthMKSFEEFIREHyersavpfpasqpgehplatgelhgspleMQTLMEENASKLLLEKLREQTLEKHlrenhlpvpsvppllagalppgqvekLNDLYENERNMLIQELIRKKLGLLIQnnqngghaedaptDLSRKLKSDMEEDEAVKEETEEEEDSA
Flexible Loop (DISEMBL)
mlpragvsppgvssedsktspqnrkispskgvpsllpmkDIRTSDPDWPRPTASFAATIADVATKTLPVIQEllsqrdgkpvgkatlpsplkaklsdyENKMKNVRESIRQKrlaqgltclqcgrSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTtkelspgpkaenrhRFREFLnehrnlernvsheeirthkkheqprkessyketentqfnsetndlskleEPNKTSSILLAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHqivelekefrltnylpsdrrkvlskelglterqikiwfqnrrmklkrthPDMVVEYVKESSearsasqktnhqsapadtsapntHMKSFEEFIREHYERSAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHLPVPSVPPLLAGALPPGQVEKLNDLYENERNMLIQELIRKKLGLLIQNNqngghaedaptdLSRKlksdmeedeavkeeteeeedsa
Low Complexity Region (SEG)
MLPRAGVSPPGVSSEDSKTSPQNRKISPSKGVPSLLPMKDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHKKHEQPRKESSYKETENTQFNSETNDLSKLEEPNKTSSILLAHLQQVQKdlglgasdslssEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQSAPADTSAPNTHMKSFEEFIREHYERSAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHlpvpsvppllagalppgQVEKLNDLYENERNMLIQELIRKKLGLLIQNNQNGGHAEDAPTDLSRKLKSDMeedeavkeeteeeeDSA
Disordered region (IsUnstruct)
*****************************************************SFAATIADVATKTLPVIQEL***************************************RLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEE**********************************************************************************************************************************IHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH**MVV***********************************************************************************************************************VEKLNDLYENERNMLIQELIRKKLGLLIQ****************************************
Disordered Region (DISOPRED)
*********************************SLLPMKDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLS***********LPS**K****************IRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRAR**************************************************************************************************************************************************************************QVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR*****************************************************************************************************************************************LYENERNMLIQELIRKKLGLLIQN***************************************
Disordered Region (DISEMBL)
****************************SKGVPSLLPMKDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNV****************************************PNKTSSILLAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIP***********NQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYV*************************NTHMKSFEEFIREHYERSAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHLPVPSVPPLLAGALPPGQVEKLNDLYENERNMLIQELIRKKLGLLIQNNQNGGHAEDAPTDLSRK**********************
Disordered Region (DISPRO)
***********************************L**KDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHE**********PR**S***ETE***************************************************************SSS*****Q**********GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT***************************************************SAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHLPVPSVPPLLAGALPPGQVEKLNDLYENERNMLIQELIRKKLGLLIQNNQ*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRAGVSPPGVSSEDSKTSPQNRKISPSKGVPSLLPMKDIRTSDPDWPRPTASFAATIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKxxxxxxxxxxxxxxxxxxxxxQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHKKHEQPRKESSYKETENTQFNSETNDLSKLEEPNKTSSILLAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQSAPADTSAPNTHMKSFEEFIREHYERSAVPFPASQPGEHPLATGELHGSPLEMQTLMEENASKLLLEKLREQTLEKHLRENHLPVPSVPPLLAGALPPGQVEKLNDLYENERNMLIQELIRKKLGLLIQNNQNGGHAEDAPTDLxxxxxxxxxxxxxxxxxxxxxEDSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	575	2.2.26 [Sep-21-2011]
P09080	307	Homeobox protein HB1 (Fra	N/A	N/A	0.175	0.328	0.456	1e-13
Q9PWD5	269	Homeobox protein Hox-A9 O	N/A	N/A	0.191	0.408	0.411	1e-13
P13545	308	Homeobox protein HB1 OS=S	yes	N/A	0.175	0.327	0.456	2e-13
Q1KKZ3	249	Homeobox protein Hox-A9b	N/A	N/A	0.128	0.297	0.506	3e-13
P51783	162	Homeobox protein Hox-A9 (	yes	N/A	0.139	0.493	0.464	5e-13
P09631	271	Homeobox protein Hox-A9 O	yes	N/A	0.139	0.295	0.464	6e-13
O42506	283	Homeobox protein Hox-A9a	N/A	N/A	0.132	0.268	0.5	6e-13
P31269	272	Homeobox protein Hox-A9 O	yes	N/A	0.139	0.294	0.464	7e-13
Q9PWL6	250	Homeobox protein Hox-A9a	no	N/A	0.132	0.304	0.487	9e-13
Q1KKT0	336	Homeobox protein Hox-D10a	N/A	N/A	0.121	0.208	0.507	1e-12

>sp|P09080|HMB1_TRIGR Homeobox protein HB1 (Fragment) OS=Tripneustes gratilla PE=2 SV=3

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 280 ASDSLSSEKDIPSNLDLSQIPKPPPSSS-HTYSNQIHKNL-LQCNTGRFRQVYSSHQIVE 337
            +  L S    P+N   SQ+  P  S+S + +      N+ L+    R RQ Y+ +Q +E
Sbjct: 144 GTGCLVSAAAEPNNNHCSQVMSPCKSTSGYPWMPVAGPNVGLEVGRKRCRQTYTRYQTLE 203

Query: 338 LEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           LEKEF    YL   RR  LS  LGLTERQIKIWFQNRRMK K+
Sbjct: 204 LEKEFHFNRYLTRRRRIELSHLLGLTERQIKIWFQNRRMKYKK 246

Tripneustes gratilla (taxid: 7673)

>sp|Q9PWD5|HXA9_MORSA Homeobox protein Hox-A9 OS=Morone saxatilis GN=hoxa9 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 9/119 (7%)

Query: 266 LAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGR 325
           +A    V+KD   G +  +S E +    LD S+  +  P      SN +H +     T +
Sbjct: 154 VATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNP-----VSNWLHASA----TRK 204

Query: 326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
            R  Y+ HQI+ELEKEF    YL  DRR  +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 205 KRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD 263

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Morone saxatilis (taxid: 34816)

>sp|P13545|HMB1_STRPU Homeobox protein HB1 OS=Strongylocentrotus purpuratus PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 280 ASDSLSSEKDIPSNLDLSQIPKPPPSSS-HTYSNQIHKNL-LQCNTGRFRQVYSSHQIVE 337
            +  L S    P+N   SQ+  P  S+S + +      N+ L+    R RQ Y+ +Q +E
Sbjct: 145 GTGCLVSAAAEPNNNHCSQVMSPCKSTSGYPWMPVSGPNVGLEVGRKRCRQTYTRYQTLE 204

Query: 338 LEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           LEKEF    YL   RR  LS  LGLTERQIKIWFQNRRMK K+
Sbjct: 205 LEKEFHFNRYLTRRRRIELSHLLGLTERQIKIWFQNRRMKYKK 247

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q1KKZ3|HXA9B_TAKRU Homeobox protein Hox-A9b OS=Takifugu rubripes GN=hoxa9b PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 311 SNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKI 369
           +N    N L     R ++  Y+ HQI+ELEKEF    YLP DRR  +++ L LTERQ+KI
Sbjct: 170 ANNPSSNWLHAKPTRKKRCPYTKHQILELEKEFLFNMYLPRDRRYEVARLLHLTERQVKI 229

Query: 370 WFQNRRMKLKRTHPD 384
           WFQNRRMK+K+ + D
Sbjct: 230 WFQNRRMKMKKENKD 244

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Takifugu rubripes (taxid: 31033)

>sp|P51783|HXA9_CAVPO Homeobox protein Hox-A9 (Fragment) OS=Cavia porcellus GN=HOXA9 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
           KPP   ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct: 78  KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 133

Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
            LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 134 NLTERQVKIWFQNRRMKMKKINKD 157

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Cavia porcellus (taxid: 10141)

>sp|P09631|HXA9_MOUSE Homeobox protein Hox-A9 OS=Mus musculus GN=Hoxa9 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
           KPP   ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct: 187 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 242

Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
            LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 243 NLTERQVKIWFQNRRMKMKKINKD 266

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation.

Mus musculus (taxid: 10090)

>sp|O42506|HXA9A_TAKRU Homeobox protein Hox-A9a OS=Takifugu rubripes GN=hoxa9a PE=3 SV=1

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 309 TYS----NQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTE 364
           TYS    N +   L    T + R  Y+ HQI+ELEKEF    YL  DRR  +++ L LTE
Sbjct: 198 TYSGDRDNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTE 257

Query: 365 RQIKIWFQNRRMKLKRTHPD 384
           RQ+KIWFQNRRMK+K+ + D
Sbjct: 258 RQVKIWFQNRRMKMKKFNKD 277

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Takifugu rubripes (taxid: 31033)

>sp|P31269|HXA9_HUMAN Homeobox protein Hox-A9 OS=Homo sapiens GN=HOXA9 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
           KPP   ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct: 188 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243

Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
            LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 244 NLTERQVKIWFQNRRMKMKKINKD 267

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation.

Homo sapiens (taxid: 9606)

>sp|Q9PWL6|HXA9A_DANRE Homeobox protein Hox-A9a OS=Danio rerio GN=hoxa9a PE=2 SV=2

 Score = 75.9 bits (185), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
           KP     +  SN +H +    +T + R  Y+ HQI+ELEKEF    YL  DRR  +++ L
Sbjct: 166 KPGADPENPVSNWLHAS----STRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL 221

Query: 361 GLTERQIKIWFQNRRMKLKR 380
            LTERQ+KIWFQNRRMK+K+
Sbjct: 222 NLTERQVKIWFQNRRMKMKK 241

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Danio rerio (taxid: 7955)

>sp|Q1KKT0|HXDAA_TAKRU Homeobox protein Hox-D10a OS=Takifugu rubripes GN=hoxd10a PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 311 SNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKI 369
           S+Q   N L   +GR ++  Y+ HQ +ELEKEF    YL  +RR  +S+ + LT+RQ+KI
Sbjct: 249 SDQPANNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVNLTDRQVKI 308

Query: 370 WFQNRRMKLKR 380
           WFQNRRMKLK+
Sbjct: 309 WFQNRRMKLKK 319

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Takifugu rubripes (taxid: 31033)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
157278072	267	HOXA9A [Oryzias latipes] gi|6252950|dbj|	0.172	0.370	0.427	5e-13
312384143	481	hypothetical protein AND_02492 [Anophele	0.213	0.255	0.427	9e-13
301128888	241	HoxB4 [Scyliorhinus canicula]	0.220	0.526	0.362	1e-12
221119570	250	PREDICTED: homeobox protein Hox-B5-like	0.213	0.492	0.380	1e-12
410911106	279	PREDICTED: homeobox protein Hox-A9a-like	0.132	0.272	0.513	2e-12
385654455	257	Hox-A9a [Anguilla japonica]	0.121	0.272	0.540	2e-12
213511602	263	homeobox protein Hox-A9b [Salmo salar] g	0.128	0.281	0.533	2e-12
165873657	238	proboscipedia hox protein [Capitella tel	0.175	0.424	0.424	2e-12
332692469	257	Homeobox A9a [Anguilla anguilla]	0.121	0.272	0.540	3e-12
255742444	243	homeobox protein HoxB4 [Callorhinchus mi	0.168	0.399	0.408	3e-12

>gi|157278072|ref|NP_001098136.1| HOXA9A [Oryzias latipes] gi|6252950|dbj|BAA86255.1| HOXA9A [Oryzias latipes]

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 282 DSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKE 341
           D LS++ D+ +++      KP    ++  SN +H +     T + R  Y+ HQI+ELEKE
Sbjct: 163 DELSAQADVSADVSAEGEEKPGLDPNNPVSNWLHASA----TRKKRCPYTKHQILELEKE 218

Query: 342 FRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           F    YL  DRR  +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 219 FLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD 261

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312384143|gb|EFR28942.1| hypothetical protein AND_02492 [Anopheles darlingi]

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 264 ILLAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNT 323
           I L+HL Q       G S    S KD+ S L  S  P+ P  S     N       +   
Sbjct: 159 IALSHLTQPATPRFDGVSTPPLSPKDLESALSSS--PRLPEESGKWTQNGDADERAKETA 216

Query: 324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR--- 380
            R RQ YS HQ +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+   
Sbjct: 217 KRTRQSYSRHQTLELEKEFHFNRYLTRRRRIEIANSLNLTERQIKIWFQNRRMKAKKDYQ 276

Query: 381 ---THPDMVVE 388
              T PD+  E
Sbjct: 277 STSTTPDLAFE 287

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301128888|emb|CBL59351.1| HoxB4 [Scyliorhinus canicula]

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 22/149 (14%)

Query: 256 EEPNKTSSILLAHLQQVQKDLG-LGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQ- 313
           E+P  + S L    +QV    G + +   L +  D   +  +S  P PPPS S  +SNQ 
Sbjct: 56  EQPYSSCSNLQGSGEQVVAPRGHVQSQTGLQNHLDKHGHQSVSLTPSPPPSCSQNFSNQN 115

Query: 314 ---------------IHKNLLQCNTG-----RFRQVYSSHQIVELEKEFRLTNYLPSDRR 353
                          +H N++  N       R R  Y+  Q++ELEKEF    YL   RR
Sbjct: 116 TPCSKEPVVYPWMKKLHINVVNPNYKGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR 175

Query: 354 KVLSKELGLTERQIKIWFQNRRMKLKRTH 382
             ++  L L+ERQIKIWFQNRRMK K+ H
Sbjct: 176 VEIAHSLCLSERQIKIWFQNRRMKWKKDH 204

Source: Scyliorhinus canicula

Species: Scyliorhinus canicula

Genus: Scyliorhinus

Family: Scyliorhinidae

Order: Carcharhiniformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221119570|ref|XP_002163407.1| PREDICTED: homeobox protein Hox-B5-like [Hydra magnipapillata]

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 19/142 (13%)

Query: 279 GASDSLSSEKDIPSNLDLSQIPKPPPSSSHTY----SNQIHKNLLQ---------C---N 322
           G  +S  S  D+ +     Q     PS SH Y    S+  + + +Q         C   +
Sbjct: 108 GYYNSSCSVNDVCNQWSYGQPASILPSYSHGYGGLNSSYQYPDFIQPSVNGVPWMCREFD 167

Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           + R R  YS HQ++ELEKEF   ++L  +RR  LSK+L L+ERQIKIWFQNRRMK K+  
Sbjct: 168 SKRKRMTYSRHQLLELEKEFHFNHFLKKERRTELSKKLNLSERQIKIWFQNRRMKFKK-- 225

Query: 383 PDMVVEYVKESSEARSASQKTN 404
            +M+   + +SS   S++ KT+
Sbjct: 226 -EMLKGTINDSSIENSSTLKTD 246

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|410911106|ref|XP_003969031.1| PREDICTED: homeobox protein Hox-A9a-like isoform 2 [Takifugu rubripes]

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 51/76 (67%)

Query: 309 TYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIK 368
           TY+N +   L    T + R  Y+ HQI+ELEKEF    YL  DRR  +++ L LTERQ+K
Sbjct: 198 TYNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVK 257

Query: 369 IWFQNRRMKLKRTHPD 384
           IWFQNRRMK+K+ + D
Sbjct: 258 IWFQNRRMKMKKFNKD 273

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|385654455|gb|AFI61959.1| Hox-A9a [Anguilla japonica]

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 311 SNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIW 370
           SN +H +    +T + R  YS HQI+ELEKEF    YL  DRR  +++ L LTERQ+KIW
Sbjct: 183 SNWLHAS----STRKKRCPYSKHQILELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 238

Query: 371 FQNRRMKLKRTHPD 384
           FQNRRMK+K+T  D
Sbjct: 239 FQNRRMKMKKTSKD 252

Source: Anguilla japonica

Species: Anguilla japonica

Genus: Anguilla

Family: Anguillidae

Order: Anguilliformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213511602|ref|NP_001133044.1| homeobox protein Hox-A9b [Salmo salar] gi|157816077|gb|ABV82057.1| homeobox protein HoxA9b [Salmo salar] gi|158702256|gb|ABW77459.1| homeobox protein HoxA9b [Salmo salar]

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 311 SNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKI 369
           +N    N L   + R ++  YS HQI+ELEKEF    YLP DRR  +++ L LTERQIKI
Sbjct: 184 TNDPSSNWLHAKSSRKKRCPYSKHQILELEKEFLFNMYLPRDRRYEVARVLHLTERQIKI 243

Query: 370 WFQNRRMKLKRTHPD 384
           WFQNRRMK+K+ + D
Sbjct: 244 WFQNRRMKMKKGNKD 258

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|165873657|gb|ABY67953.1| proboscipedia hox protein [Capitella teleta]

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 276 LGLGASDSLSS-EKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQ 334
           + LGASD   +  +DI S+  L+    PPP+S     + +  N  +    R R  Y++ Q
Sbjct: 82  INLGASDFPEAMTQDITSSGLLTSGVAPPPTSCGNTGSSVASNHPR----RLRTAYTNTQ 137

Query: 335 IVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           ++ELEKEF    YL   RR  ++  L LTERQ+K+WFQNRRMK KR
Sbjct: 138 LLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKFKR 183

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|332692469|gb|AEE90151.1| Homeobox A9a [Anguilla anguilla]

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 311 SNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIW 370
           SN +H +    +T + R  YS HQI+ELEKEF    YL  DRR  +++ L LTERQ+KIW
Sbjct: 183 SNWLHAS----STRKKRCPYSKHQILELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 238

Query: 371 FQNRRMKLKRTHPD 384
           FQNRRMK+K+T  D
Sbjct: 239 FQNRRMKMKKTSKD 252

Source: Anguilla anguilla

Species: Anguilla anguilla

Genus: Anguilla

Family: Anguillidae

Order: Anguilliformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|255742444|gb|ACU32558.1| homeobox protein HoxB4 [Callorhinchus milii]

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 61/120 (50%), Gaps = 23/120 (19%)

Query: 300 PKPPPSSSHTYSNQ----------------IHKNLLQ--CNTG---RFRQVYSSHQIVEL 338
           P PPPS S   SNQ                +H N++   C  G   R R  Y+  Q++EL
Sbjct: 102 PSPPPSCSQVTSNQNTSCSKEPVVYPWMKKVHINIVNPNCKGGEMKRSRTAYTRQQVLEL 161

Query: 339 EKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH--PDMVVEYVKESSEA 396
           EKEF    YL   RR  ++  L L+ERQIKIWFQNRRMK K+ H  P+  +     SS A
Sbjct: 162 EKEFHFNRYLTRRRRVEIAHNLCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSTTGSSTA 221

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
UNIPROTKB|D6RAR5	112	D6RAR5 "Uncharacterized protei	0.139	0.714	0.464	9.4e-14
UNIPROTKB|P51783	162	HOXA9 "Homeobox protein Hox-A9	0.139	0.493	0.464	9.4e-14
ZFIN|ZDB-GENE-000823-1	250	hoxa9a "homeo box A9a" [Danio	0.132	0.304	0.487	1.2e-13
ZFIN|ZDB-GENE-990415-108	246	hoxb8a "homeo box B8a" [Danio	0.151	0.353	0.478	3.3e-13
ZFIN|ZDB-GENE-980526-291	247	hoxb8b "homeo box B8b" [Danio	0.156	0.364	0.458	4.2e-13
UNIPROTKB|F1RZG0	257	HOXD4 "Uncharacterized protein	0.196	0.439	0.373	4.8e-13
UNIPROTKB|P09016	255	HOXD4 "Homeobox protein Hox-D4	0.217	0.490	0.367	6.2e-13
UNIPROTKB|E2R520	272	HOXA9 "Uncharacterized protein	0.139	0.294	0.476	6.2e-13
UNIPROTKB|F1SHT5	272	LOC100737711 "Uncharacterized	0.139	0.294	0.476	6.2e-13
UNIPROTKB|F1NE14	169	LOC100858551 "Uncharacterized	0.139	0.473	0.452	8.8e-13

UNIPROTKB|D6RAR5 D6RAR5 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 9.4e-14, P = 9.4e-14
 Identities = 39/84 (46%), Positives = 54/84 (64%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KPP   ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct:    28 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 83

Query:   361 GLTERQIKIWFQNRRMKLKRTHPD 384
              LTERQ+KIWFQNRRMK+K+ + D
Sbjct:    84 NLTERQVKIWFQNRRMKMKKINKD 107

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P51783 HOXA9 "Homeobox protein Hox-A9" [Cavia porcellus (taxid:10141)]

 Score = 187 (70.9 bits), Expect = 9.4e-14, P = 9.4e-14
 Identities = 39/84 (46%), Positives = 54/84 (64%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KPP   ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct:    78 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 133

Query:   361 GLTERQIKIWFQNRRMKLKRTHPD 384
              LTERQ+KIWFQNRRMK+K+ + D
Sbjct:   134 NLTERQVKIWFQNRRMKMKKINKD 157

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

ZFIN|ZDB-GENE-000823-1 hoxa9a "homeo box A9a" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 39/80 (48%), Positives = 52/80 (65%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KP     +  SN +H +    +T + R  Y+ HQI+ELEKEF    YL  DRR  +++ L
Sbjct:   166 KPGADPENPVSNWLHAS----STRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL 221

Query:   361 GLTERQIKIWFQNRRMKLKR 380
              LTERQ+KIWFQNRRMK+K+
Sbjct:   222 NLTERQVKIWFQNRRMKMKK 241

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

ZFIN|ZDB-GENE-990415-108 hoxb8a "homeo box B8a" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 44/92 (47%), Positives = 52/92 (56%)

Query:   325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH-- 382
             R RQ YS +Q +ELEKEF    YL   RR  +S  LGLTERQ+KIWFQNRRMK K+ +  
Sbjct:   148 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 207

Query:   383 ---PDMVVEYVKESSEARSASQKTNHQSAPAD 411
                P    E  +   E R   Q +  QSA  D
Sbjct:   208 DKFPSSKSEQEQIEKEKREKEQASGTQSAGED 239

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

ZFIN|ZDB-GENE-980526-291 hoxb8b "homeo box B8b" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 44/96 (45%), Positives = 53/96 (55%)

Query:   325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH-- 382
             R RQ YS +Q +ELEKEF    YL   RR  +S  L LTERQ+KIWFQNRRMK K+ H  
Sbjct:   147 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEHNK 206

Query:   383 ---PDMVVEYVKESSEARSASQKTN-HQSAPADTSA 414
                P    E  +   E +  SQ +  H S   D+ A
Sbjct:   207 DKFPSSKAEQEEIERERQEGSQVSEKHTSGEEDSEA 242

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|F1RZG0 HOXD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 50/134 (37%), Positives = 73/134 (54%)

Query:   300 PK-PPPSSS-------HTYSNQIHKNLLQCN-TG----RFRQVYSSHQIVELEKEFRLTN 346
             PK PPP ++       + +  ++H N +  N TG    R R  Y+  Q++ELEKEF    
Sbjct:   119 PKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNR 178

Query:   347 YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQ 406
             YL   RR  ++  L L+ERQIKIWFQNRRMK K+ H          +++ RS+S  ++  
Sbjct:   179 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK-------LPNTKGRSSSSSSSSS 231

Query:   407 SAPADTSAPNTHMK 420
             S  + T AP  H++
Sbjct:   232 SCSSST-APGQHLQ 244

GO:0005634 "nucleus" evidence=IEA

GO:0048863 "stem cell differentiation" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P09016 HOXD4 "Homeobox protein Hox-D4" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 47/128 (36%), Positives = 62/128 (48%)

Query:   288 KDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNY 347
             K  PS   L Q     P     + N ++ N       R R  Y+  Q++ELEKEF    Y
Sbjct:   119 KQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRY 178

Query:   348 LPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQS 407
             L   RR  ++  L L+ERQIKIWFQNRRMK K+ H    +   K  S + S+S   +   
Sbjct:   179 LTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK---LPNTKGRSSSSSSSSSCSSSV 235

Query:   408 APADTSAP 415
             AP+    P
Sbjct:   236 APSQHLQP 243

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0048863 "stem cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

UNIPROTKB|E2R520 HOXA9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 40/84 (47%), Positives = 54/84 (64%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KPP   S+  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct:   188 KPPIDPSNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243

Query:   361 GLTERQIKIWFQNRRMKLKRTHPD 384
              LTERQ+KIWFQNRRMK+K+ + D
Sbjct:   244 NLTERQVKIWFQNRRMKMKKINKD 267

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0042118 "endothelial cell activation" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0030879 "mammary gland development" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0009954 "proximal/distal pattern formation" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1SHT5 LOC100737711 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 40/84 (47%), Positives = 54/84 (64%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KPP   S+  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct:   188 KPPIDPSNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243

Query:   361 GLTERQIKIWFQNRRMKLKRTHPD 384
              LTERQ+KIWFQNRRMK+K+ + D
Sbjct:   244 NLTERQVKIWFQNRRMKMKKINKD 267

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1NE14 LOC100858551 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query:   301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
             KP    ++  +N +H      +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L
Sbjct:    85 KPHIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 140

Query:   361 GLTERQIKIWFQNRRMKLKRTHPD 384
              LTERQ+KIWFQNRRMK+K+ + D
Sbjct:   141 NLTERQVKIWFQNRRMKMKKINKD 164

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009954 "proximal/distal pattern formation" evidence=IEA

GO:0030879 "mammary gland development" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	575
pfam00046	57	pfam00046, Homeobox, Homeobox domain	3e-21
smart00389	57	smart00389, HOX, Homeodomain	4e-18
cd00086	59	cd00086, homeodomain, Homeodomain; DNA binding dom	5e-18
COG5576	156	COG5576, COG5576, Homeodomain-containing transcrip	6e-07

>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain

 Score = 86.8 bits (216), Expect = 3e-21
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++  Q+ ELEKEF    Y  ++ R+ L+K+LGLTERQ+K+WFQNRR K KR
Sbjct: 2   RKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57

Length = 57

>gnl|CDD|197696 smart00389, HOX, Homeodomain

 Score = 78.1 bits (193), Expect = 4e-18
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           R R  ++  Q+ ELEKEF+   Y   + R+ L+K+LGL+ERQ+K+WFQNRR K K
Sbjct: 3   RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57

DNA-binding factors that are involved in the transcriptional regulation of key developmental processes. Length = 57

>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 33/58 (56%), Positives = 41/58 (70%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R R  ++  Q+ ELEKEF    Y   + R+ L+KELGLTERQ+KIWFQNRR KLKR+ 
Sbjct: 2   RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59

Length = 59

>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription]

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH--PDMVVE 388
           +  Q++ LE+EF +  Y  S  R  LS  L +  + ++IWFQN+R K K+          
Sbjct: 59  TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRP 118

Query: 389 YVKESSEARSASQKT 403
             +E+  A+  S  T
Sbjct: 119 GEEEADLAKIGSLST 133

Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
KOG2462|consensus	279		99.89
KOG2462|consensus	279		99.82
KOG0484|consensus	125		99.82
KOG2251|consensus	228		99.79
KOG3623|consensus	1007		99.71
KOG3576|consensus	267		99.7
KOG0850|consensus	245		99.7
KOG0494|consensus	332		99.7
KOG0489|consensus	261		99.68
KOG0488|consensus	309		99.67
KOG0843|consensus	197		99.66
KOG0485|consensus	268		99.61
KOG0487|consensus	308		99.61
KOG0842|consensus	307		99.6
KOG0486|consensus	351		99.58
KOG0492|consensus	246		99.57
KOG0848|consensus	317		99.57
KOG0493|consensus	342		99.56
PF00046	57	Homeobox: Homeobox domain not present here.; Inter	99.56
KOG4577|consensus	383		99.53
KOG0844|consensus	408		99.51
KOG1074|consensus	958		99.5
TIGR01565	58	homeo_ZF_HD homeobox domain, ZF-HD class. This mod	99.5
KOG3623|consensus	1007		99.48
KOG0491|consensus	194		99.47
KOG1074|consensus	958		99.45
smart00389	56	HOX Homeodomain. DNA-binding factors that are invo	99.38
KOG0483|consensus	198		99.37
cd00086	59	homeodomain Homeodomain; DNA binding domains invol	99.36
COG5576	156	Homeodomain-containing transcription factor [Trans	99.36
KOG0847|consensus	288		99.31
KOG3802|consensus	398		99.3
KOG3576|consensus	267		99.22
KOG3608|consensus	467		99.21
KOG0490|consensus	235		99.2
KOG3608|consensus	467		99.11
KOG0849|consensus	354		99.07
KOG1146|consensus	1406		98.93
PHA00733	128	hypothetical protein	98.86
PHA02768	55	hypothetical protein; Provisional	98.84
KOG1168|consensus	385		98.78
PLN03086	567	PRLI-interacting factor K; Provisional	98.72
KOG0775|consensus	304		98.64
PHA00733	128	hypothetical protein	98.58
PHA02768	55	hypothetical protein; Provisional	98.46
PLN03086	567	PRLI-interacting factor K; Provisional	98.42
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.36
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.33
KOG3993|consensus	500		98.28
KOG0774|consensus	334		98.17
KOG3993|consensus	500		98.15
PHA00616	44	hypothetical protein	98.08
KOG0490|consensus	235		98.06
KOG1146|consensus	1406		98.04
PHA00732	79	hypothetical protein	97.98
PF05920	40	Homeobox_KN: Homeobox KN domain; InterPro: IPR0084	97.97
KOG2252|consensus	558		97.94
PHA00732	79	hypothetical protein	97.64
PHA00616	44	hypothetical protein	97.51
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.42
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.35
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.18
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.02
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.85
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.71
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.53
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.52
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.43
PRK04860	160	hypothetical protein; Provisional	96.31
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.94
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.9
smart00355	26	ZnF_C2H2 zinc finger.	95.73
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.48
COG5189	423	SFP1 Putative transcriptional repressor regulating	95.34
PRK04860	160	hypothetical protein; Provisional	95.33
PF11569	56	Homez: Homeodomain leucine-zipper encoding, Homez;	95.23
smart00355	26	ZnF_C2H2 zinc finger.	95.14
COG5048	467	FOG: Zn-finger [General function prediction only]	94.9
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.83
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.85
KOG0773|consensus	342		93.41
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.11
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.61
PF04218	53	CENP-B_N: CENP-B N-terminal DNA-binding domain; In	92.59
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	92.29
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.84
KOG2482|consensus	423		90.39
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	89.87
COG5048	467	FOG: Zn-finger [General function prediction only]	89.84
KOG2231|consensus	669		89.16
KOG2893|consensus	341		88.9
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	87.48
KOG2231|consensus	669		87.12
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	86.59
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	82.27
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.64
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.25

>KOG2462|consensus

Probab=99.89  E-value=2.2e-23  Score=201.91  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=122.9

Q ss_pred             hccccccCchHHHhhhccCCCCCCCCC---CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHH
Q psy4272          59 IADVATKTLPVIQELLSQRDGKPVGKA---TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKR  135 (575)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~  135 (575)
                      ..-+|..|.+.+.+.+.+.+|+..|-.   ...+.|.+|+|.|... ..|+.|+|+|+  -+++|.+|||.|.+..-|+.
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSm-pALkMHirTH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSM-PALKMHIRTHT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeeh-HHHhhHhhccC--CCcccccccccccchHHhhc
Confidence            345788999999999988888877755   5668999999999998 69999999998  68999999999999999999


Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhh
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLER  215 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H  215 (575)
                      |+|+|||||| |.|.+|+|.|..+++|+.||++ |.+.++|                     +|..|+|+|...+.|.+|
T Consensus       206 HiRTHTGEKP-F~C~hC~kAFADRSNLRAHmQT-HS~~K~~---------------------qC~~C~KsFsl~SyLnKH  262 (279)
T KOG2462|consen  206 HIRTHTGEKP-FSCPHCGKAFADRSNLRAHMQT-HSDVKKH---------------------QCPRCGKSFALKSYLNKH  262 (279)
T ss_pred             ccccccCCCC-ccCCcccchhcchHHHHHHHHh-hcCCccc---------------------cCcchhhHHHHHHHHHHh
Confidence            9999999999 9999999999999999999999 8888888                     999999999999999999


Q ss_pred             hh
Q psy4272         216 NV  217 (575)
Q Consensus       216 ~~  217 (575)
                      ..
T Consensus       263 ~E  264 (279)
T KOG2462|consen  263 SE  264 (279)
T ss_pred             hh
Confidence            64

>KOG2462|consensus

Probab=99.82  E-value=1.5e-20  Score=182.44  Aligned_cols=125  Identities=17%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcC---CCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhH
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKR---LAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDL  162 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~---~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L  162 (575)
                      ..-|.|..||+.|.+. ++|.+|+.+|.   ..+.|.|++|||.|.....|+.|+|+|+  -+ ++|.+|||.|.+..-|
T Consensus       128 ~~r~~c~eCgk~ysT~-snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~-c~C~iCGKaFSRPWLL  203 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTS-SNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LP-CECGICGKAFSRPWLL  203 (279)
T ss_pred             CCceeccccccccccc-cccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CC-cccccccccccchHHh
Confidence            3458999999999988 79999999996   3577999999999999999999999998  56 9999999999999999


Q ss_pred             HHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhhhccccCCCCCCCCC
Q psy4272         163 KKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHKKHEQPRKESS  236 (575)
Q Consensus       163 ~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~~~~~~~~~~~ss  236 (575)
                      +-|+|+ |+||+||                     .|.+|+|.|..+++|+.|+.||.+.+.|.+..+.+.++.
T Consensus       204 QGHiRT-HTGEKPF---------------------~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  204 QGHIRT-HTGEKPF---------------------SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             hccccc-ccCCCCc---------------------cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence            999999 9999999                     999999999999999999999999999999888665554

>KOG0484|consensus

Probab=99.82  E-value=9.8e-21  Score=155.49  Aligned_cols=69  Identities=30%  Similarity=0.557  Sum_probs=64.3

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchh
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVV  387 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~  387 (575)
                      ..+|+||-||+||..||.+||+.|.+++||++..|++||.++.|++.+|||||||||||+||+.+....
T Consensus        13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a~~   81 (125)
T KOG0484|consen   13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAAIA   81 (125)
T ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999998765443

>KOG2251|consensus

Probab=99.79  E-value=2.3e-19  Score=168.37  Aligned_cols=68  Identities=29%  Similarity=0.438  Sum_probs=64.6

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         318 LLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       318 ~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ...+|+||.||+|+..||++||.+|.+++||++..|++||.+|+|++.+|||||+|||||+|++++.+
T Consensus        32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq   99 (228)
T KOG2251|consen   32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ   99 (228)
T ss_pred             ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence            45689999999999999999999999999999999999999999999999999999999999988765

>KOG3623|consensus

Probab=99.71  E-value=3.3e-17  Score=174.86  Aligned_cols=110  Identities=20%  Similarity=0.318  Sum_probs=77.2

Q ss_pred             CCCCCCcchhhcchhHHHHHhhh-c-CCCCcccccccCccccChhhHHHHhhhhh-------------CCCCCccccccc
Q psy4272          89 SPLKAKLSDYENKMKNVRESIRQ-K-RLAQGLTCLQCGRSYCRPYNLKRHIQYEC-------------GKAPQFPCLYCS  153 (575)
Q Consensus        89 ~~C~~C~~~f~~~~~~L~~H~r~-H-~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~-------------gekp~~~C~~Cg  153 (575)
                      ..|.+|.+.|.+. ..|+.|+.. | ..+..|.|..|...|..+..|.+|+.+|.             +.+. |+|..||
T Consensus       211 ltcpycdrgykrl-tslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRK-FKCtECg  288 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRL-TSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRK-FKCTECG  288 (1007)
T ss_pred             hcchhHHHHHHHH-HHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcc-ccccccc
Confidence            3577777777766 466666653 2 23445778778877877777777777763             2355 7788888


Q ss_pred             ccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhh
Q psy4272         154 YRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEI  222 (575)
Q Consensus       154 k~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~  222 (575)
                      |.|..+.+|+.|+|+ |.|+++|                     +|..|.|.|........|+-+...|
T Consensus       289 KAFKfKHHLKEHlRI-HSGEKPf---------------------eCpnCkKRFSHSGSySSHmSSKKCI  335 (1007)
T KOG3623|consen  289 KAFKFKHHLKEHLRI-HSGEKPF---------------------ECPNCKKRFSHSGSYSSHMSSKKCI  335 (1007)
T ss_pred             hhhhhHHHHHhhhee-ecCCCCc---------------------CCcccccccccCCcccccccccchh
Confidence            888888888888777 7777777                     7777877777777777776544333

>KOG3576|consensus

Probab=99.70  E-value=1.4e-17  Score=153.66  Aligned_cols=124  Identities=12%  Similarity=0.162  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhH
Q psy4272          83 GKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDL  162 (575)
Q Consensus        83 ~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L  162 (575)
                      .+....+.|.+|+|.|.-+ ..|.+|++.|...|.|-|..|||.|.....|++|+|+|+|.+| |+|..|+|.|.++..|
T Consensus       112 ssd~d~ftCrvCgK~F~lQ-Rmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~c~kaftqrcsl  189 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQ-RMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSLCEKAFTQRCSL  189 (267)
T ss_pred             CCCCCeeeeehhhhhhhHH-HHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc-cchhhhhHHHHhhccH
Confidence            3446779999999999888 5999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhh
Q psy4272         163 KKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSH  219 (575)
Q Consensus       163 ~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th  219 (575)
                      ..|.+..|+..-.|..+...           .-.+.|+.|+.+-........|...|
T Consensus       190 eshl~kvhgv~~~yaykerr-----------~kl~vcedcg~t~~~~e~~~~h~~~~  235 (267)
T KOG3576|consen  190 ESHLKKVHGVQHQYAYKERR-----------AKLYVCEDCGYTSERPEVYYLHLKLH  235 (267)
T ss_pred             HHHHHHHcCchHHHHHHHhh-----------hheeeecccCCCCCChhHHHHHHHhc
Confidence            99999878765544332211           11237999998877777777787655

>KOG0850|consensus

Probab=99.70  E-value=3.3e-17  Score=154.42  Aligned_cols=71  Identities=39%  Similarity=0.582  Sum_probs=65.9

Q ss_pred             cccccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         315 HKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       315 ~~~~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .-+..++|.|+.||.|+..||..|.+.|++++|....+|.+||..|||+..||||||||||.|.||..+..
T Consensus       114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g  184 (245)
T KOG0850|consen  114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQG  184 (245)
T ss_pred             ccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcC
Confidence            34566788899999999999999999999999999999999999999999999999999999999988743

>KOG0494|consensus

Probab=99.70  E-value=1.7e-17  Score=157.83  Aligned_cols=65  Identities=35%  Similarity=0.618  Sum_probs=59.7

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ++|+.||.||..|+..||+.|.+.+||+...|+.||.++.|++.+||||||||||||||..+...
T Consensus       140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg  204 (332)
T KOG0494|consen  140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWG  204 (332)
T ss_pred             ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcC
Confidence            44445999999999999999999999999999999999999999999999999999999876543

>KOG0489|consensus

Probab=99.68  E-value=1.3e-17  Score=167.52  Aligned_cols=67  Identities=46%  Similarity=0.735  Sum_probs=62.9

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ..+.||.||.||..||.+||+.|..|+|.++..|.|||..|.|+|+||||||||||+||||..+...
T Consensus       156 ~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~  222 (261)
T KOG0489|consen  156 GGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKS  222 (261)
T ss_pred             cCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Confidence            3457999999999999999999999999999999999999999999999999999999999877654

>KOG0488|consensus

Probab=99.67  E-value=7e-17  Score=164.81  Aligned_cols=67  Identities=42%  Similarity=0.655  Sum_probs=63.0

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         318 LLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       318 ~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..++|+|+.||.||..||..||+.|++..|.+..+|.+||..|||+..||++||||||+||||+...
T Consensus       167 ~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~  233 (309)
T KOG0488|consen  167 STPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE  233 (309)
T ss_pred             CCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence            3448889999999999999999999999999999999999999999999999999999999997654

>KOG0843|consensus

Probab=99.66  E-value=5.1e-17  Score=147.45  Aligned_cols=64  Identities=38%  Similarity=0.692  Sum_probs=61.1

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .+.||.||.||.+||..||..|+.++|....+|+.||+.|+|++.||||||||||.|.||.+..
T Consensus       100 ~~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e  163 (197)
T KOG0843|consen  100 MRPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE  163 (197)
T ss_pred             cCCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999999999999997654

>KOG0485|consensus

Probab=99.61  E-value=2.6e-15  Score=139.72  Aligned_cols=65  Identities=45%  Similarity=0.658  Sum_probs=61.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..++||.||+|+..|+..||..|+..+|.+..+|..||.+|.|++.||||||||||-||||+...
T Consensus       101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa  165 (268)
T KOG0485|consen  101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA  165 (268)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence            45788899999999999999999999999999999999999999999999999999999997643

>KOG0487|consensus

Probab=99.61  E-value=3.4e-16  Score=156.79  Aligned_cols=69  Identities=45%  Similarity=0.668  Sum_probs=63.6

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         318 LLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       318 ~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ...+..|++|.-+|..|+.+||+.|..|.|.+...|.+|++.|+|++|||||||||||+|+||..+...
T Consensus       230 ~~~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r  298 (308)
T KOG0487|consen  230 SSARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR  298 (308)
T ss_pred             ccccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence            334678889999999999999999999999999999999999999999999999999999999886443

>KOG0842|consensus

Probab=99.60  E-value=1.5e-15  Score=152.17  Aligned_cols=70  Identities=41%  Similarity=0.656  Sum_probs=64.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEY  389 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~~~  389 (575)
                      .+++||.|..|+..|+.+||+.|..++|.+..+|+.||..|+|++.||||||||||-|.||+++......
T Consensus       150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~~~  219 (307)
T KOG0842|consen  150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKALEA  219 (307)
T ss_pred             cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhhhc
Confidence            4567788999999999999999999999999999999999999999999999999999999887665443

>KOG0486|consensus

Probab=99.58  E-value=1.6e-15  Score=148.80  Aligned_cols=71  Identities=28%  Similarity=0.484  Sum_probs=65.9

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchhhh
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEY  389 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~~~  389 (575)
                      +-.|+||.||.||..||.+||..|.+|+||++..|++||..++|++.+|+|||+||||||||+.+.++.+.
T Consensus       108 ki~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ae~  178 (351)
T KOG0486|consen  108 KISKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL  178 (351)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHHHHh
Confidence            33588999999999999999999999999999999999999999999999999999999999998877443

>KOG0492|consensus

Probab=99.57  E-value=1.1e-15  Score=141.33  Aligned_cols=66  Identities=39%  Similarity=0.624  Sum_probs=61.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .+..|+.||-||..||..||+.|...+|.++.+|.+++..|.|++.||||||||||||.||.+...
T Consensus       141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae  206 (246)
T KOG0492|consen  141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAE  206 (246)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999977543

>KOG0848|consensus

Probab=99.57  E-value=1.4e-15  Score=145.82  Aligned_cols=66  Identities=44%  Similarity=0.773  Sum_probs=61.0

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      +.+-+.|.++|..|+.+||+.|..++|.++..+.|||.-|||+||||||||||||||+||.++...
T Consensus       197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~  262 (317)
T KOG0848|consen  197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR  262 (317)
T ss_pred             ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence            344567899999999999999999999999999999999999999999999999999999887664

>KOG0493|consensus

Probab=99.56  E-value=4e-15  Score=141.84  Aligned_cols=94  Identities=33%  Similarity=0.527  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhh
Q psy4272         288 KDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQI  367 (575)
Q Consensus       288 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V  367 (575)
                      ...|.++.+.-+...+.+ +.-+...++.....+.-||.||.||.+||..|+..|..|+|.+...|.+||.+|||.+.||
T Consensus       212 ~mwPAWVycTRYSDRPSs-GPR~Rk~kkkk~~~~eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQI  290 (342)
T KOG0493|consen  212 SMWPAWVYCTRYSDRPSS-GPRHRKPKKKKSSSKEEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQI  290 (342)
T ss_pred             cccceeeeeecccCCCCC-CcccccccccCCccchhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHh
Confidence            555666666555444333 3222222222223455689999999999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhhhcC
Q psy4272         368 KIWFQNRRMKLKRTH  382 (575)
Q Consensus       368 ~vWFqNrRak~kk~~  382 (575)
                      ||||||+|||-||..
T Consensus       291 KIWFQNKRAKiKKsT  305 (342)
T KOG0493|consen  291 KIWFQNKRAKIKKST  305 (342)
T ss_pred             hHHhhhhhhhhhhcc
Confidence            999999999999854

>PF00046 Homeobox: Homeobox domain not present here

Probab=99.56  E-value=3.6e-15  Score=114.63  Aligned_cols=57  Identities=47%  Similarity=0.712  Sum_probs=55.5

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      ||.|+.||..|+.+|+..|..++||+..+++.||..+||+..+|++||+|||+|+||
T Consensus         1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk   57 (57)
T PF00046_consen    1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK   57 (57)
T ss_dssp             SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence            678999999999999999999999999999999999999999999999999999986

; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....

>KOG4577|consensus

Probab=99.53  E-value=1.4e-14  Score=140.06  Aligned_cols=66  Identities=32%  Similarity=0.466  Sum_probs=62.0

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchh
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVV  387 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~  387 (575)
                      ..||+||++|..||+.|+.+|...+.|.+..|+.|+.++||..|+|||||||||||+||.++....
T Consensus       166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR  231 (383)
T KOG4577|consen  166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGR  231 (383)
T ss_pred             ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcch
Confidence            358999999999999999999999999999999999999999999999999999999998876543

>KOG0844|consensus

Probab=99.51  E-value=6.5e-15  Score=143.27  Aligned_cols=68  Identities=44%  Similarity=0.661  Sum_probs=62.5

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         318 LLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       318 ~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ......||.||.||.+|+..||+.|.+-.|.++..|.|||..|+|++..|||||||||+|+||++-.+
T Consensus       176 sa~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRlam  243 (408)
T KOG0844|consen  176 SADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAM  243 (408)
T ss_pred             CccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhhc
Confidence            34456799999999999999999999999999999999999999999999999999999999977543

>KOG1074|consensus

Probab=99.50  E-value=1.8e-14  Score=157.05  Aligned_cols=55  Identities=16%  Similarity=0.260  Sum_probs=50.7

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhh
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      ..++.|.+|.|.|... +.|+.|.|.|||++||+|.+||.+|..+.+|+-|...|+
T Consensus       351 ~~khkCr~CakvfgS~-SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  351 FFKHKCRFCAKVFGSD-SALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             cccchhhhhHhhcCch-hhhhhhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            4567899999999988 899999999999999999999999999999999987664

>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class

Probab=99.50  E-value=2.5e-14  Score=108.49  Aligned_cols=53  Identities=17%  Similarity=0.394  Sum_probs=50.9

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCC----CCHHHHHHHHHHhCCChhhhhhcccchh
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNY----LPSDRRKVLSKELGLTERQIKIWFQNRR  375 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~----p~~~~r~~la~~l~l~~~~V~vWFqNrR  375 (575)
                      +||.||.||.+|+..|+..|+.+.|    |+..+|++||..|||++++|||||||.+
T Consensus         1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k   57 (58)
T TIGR01565         1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK   57 (58)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence            3789999999999999999999999    9999999999999999999999999964

This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.

>KOG3623|consensus

Probab=99.48  E-value=1.1e-14  Score=155.81  Aligned_cols=83  Identities=14%  Similarity=0.316  Sum_probs=78.4

Q ss_pred             CCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHH
Q psy4272          84 KATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLK  163 (575)
Q Consensus        84 ~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~  163 (575)
                      ....+|.|..|+|.|... +.|.+|.--|+|.+||+|.+|.|.|+.+.+|..|+|.|.|||| |.|+.|+|+|++...+.
T Consensus       890 te~gmyaCDqCDK~FqKq-SSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP-fQCdKClKRFSHSGSYS  967 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQ-SSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP-FQCDKCLKRFSHSGSYS  967 (1007)
T ss_pred             CccccchHHHHHHHHHhh-HHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc-chhhhhhhhcccccchH
Confidence            346789999999999887 7899999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHh
Q psy4272         164 KHVTF  168 (575)
Q Consensus       164 ~H~r~  168 (575)
                      .||.-
T Consensus       968 QHMNH  972 (1007)
T KOG3623|consen  968 QHMNH  972 (1007)
T ss_pred             hhhcc
Confidence            99963

>KOG0491|consensus

Probab=99.47  E-value=1.7e-14  Score=128.87  Aligned_cols=67  Identities=40%  Similarity=0.697  Sum_probs=62.4

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ..++++.||+|+..|+..|++.|+..+|.+..+|.|||..|+|++.|||.||||||+|.||.++...
T Consensus        97 ~~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~  163 (194)
T KOG0491|consen   97 HCRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ  163 (194)
T ss_pred             HHHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence            4567888999999999999999999999999999999999999999999999999999999876544

>KOG1074|consensus

Probab=99.45  E-value=3.8e-14  Score=154.49  Aligned_cols=84  Identities=24%  Similarity=0.320  Sum_probs=74.6

Q ss_pred             ccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCC
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKA  197 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~  197 (575)
                      -.|-+|-++...++.|+.|.|+|+|||| |+|.+||+.|.++.+|+.||-+ |...-++.                 ..+
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERP-FkCKiCgRAFtTkGNLkaH~~v-Hka~p~~R-----------------~q~  666 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERP-FKCKICGRAFTTKGNLKAHMSV-HKAKPPAR-----------------VQF  666 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCc-cccccccchhccccchhhcccc-cccCcccc-----------------ccc
Confidence            3899999999999999999999999999 9999999999999999999998 66554441                 123


Q ss_pred             cch---hhhhhccChhhhHhhhhhhh
Q psy4272         198 ENR---HRFREFLNEHRNLERNVSHE  220 (575)
Q Consensus       198 ~C~---~C~k~F~~~~~l~~H~~th~  220 (575)
                      .|.   .|.+.|.+.-.|.+|.+.|.
T Consensus       667 ScP~~~ic~~kftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  667 SCPSTFICQKKFTNAVTLPQHIRIHL  692 (958)
T ss_pred             cCCchhhhcccccccccccceEEeec
Confidence            888   99999999999999988876

>smart00389 HOX Homeodomain

Probab=99.38  E-value=5.1e-13  Score=102.11  Aligned_cols=56  Identities=48%  Similarity=0.812  Sum_probs=52.9

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      ++.|+.|+..|+.+|++.|..++||+..++..||..+||+..+|++||+|||++.|
T Consensus         1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~   56 (56)
T smart00389        1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK   56 (56)
T ss_pred             CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence            35678899999999999999999999999999999999999999999999999864

DNA-binding factors that are involved in the transcriptional regulation of key developmental processes

>KOG0483|consensus

Probab=99.37  E-value=2.8e-13  Score=128.66  Aligned_cols=72  Identities=36%  Similarity=0.522  Sum_probs=63.4

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchhhhhhhch
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESS  394 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~~~~~~~~  394 (575)
                      ..+++.+|+.+|+..||..|+...|.....+..||..|||.+|||.|||||||||||.++.......++...
T Consensus        50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~  121 (198)
T KOG0483|consen   50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQL  121 (198)
T ss_pred             cccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHH
Confidence            445556899999999999999999999999999999999999999999999999999988776666655443

>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner

Probab=99.36  E-value=9.1e-13  Score=101.72  Aligned_cols=58  Identities=57%  Similarity=0.879  Sum_probs=54.9

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ++.|+.|+..|+.+|++.|..++||+..++..||..+||+..+|++||+|||++.++.
T Consensus         1 ~~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~   58 (59)
T cd00086           1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS   58 (59)
T ss_pred             CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence            3568899999999999999999999999999999999999999999999999998874

>COG5576 Homeodomain-containing transcription factor [Transcription]

Probab=99.36  E-value=7.2e-13  Score=121.76  Aligned_cols=67  Identities=31%  Similarity=0.473  Sum_probs=61.3

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcchh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVV  387 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~~  387 (575)
                      ...+++|++.|..|+.+|++.|..++||+...|..|+..|+|+++-|||||||||+|.|+.......
T Consensus        49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~  115 (156)
T COG5576          49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE  115 (156)
T ss_pred             CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence            4567788889999999999999999999999999999999999999999999999999998766543

>KOG0847|consensus

Probab=99.31  E-value=1.5e-12  Score=121.39  Aligned_cols=66  Identities=39%  Similarity=0.716  Sum_probs=60.8

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      .+++-.|.+|+-.|+..|+..|+.++|+-..+|.+||..+|+++.+|+|||||||.||||+.....
T Consensus       165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAaEm  230 (288)
T KOG0847|consen  165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAAEM  230 (288)
T ss_pred             ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhccch
Confidence            466677899999999999999999999999999999999999999999999999999999875443

>KOG3802|consensus

Probab=99.30  E-value=1.2e-12  Score=133.83  Aligned_cols=62  Identities=27%  Similarity=0.381  Sum_probs=59.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      |+||+||.|.......||++|.+|+.|+..++..||.+|+|.+.||+|||.|||.|.||...
T Consensus       293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~  354 (398)
T KOG3802|consen  293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP  354 (398)
T ss_pred             cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence            78889999999999999999999999999999999999999999999999999999999765

>KOG3576|consensus

Probab=99.22  E-value=8.9e-12  Score=115.60  Aligned_cols=114  Identities=9%  Similarity=0.123  Sum_probs=99.3

Q ss_pred             hhccccccCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHh
Q psy4272          58 TIADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHI  137 (575)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~  137 (575)
                      ...-.|..|.+.|....-+..|..-|...+-|.|..||+.|.... .|++|+|+|+|.+||+|..|+|.|.++..|..|.
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtf-dlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTF-DLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchh-hhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            344568899999988888888888888899999999999999984 8999999999999999999999999999999998


Q ss_pred             hh-hh----------CCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         138 QY-EC----------GKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       138 r~-H~----------gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +. |-          ..|- |.|+.||..-.....+..|++.||...
T Consensus       194 ~kvhgv~~~yaykerr~kl-~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKL-YVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             HHHcCchHHHHHHHhhhhe-eeecccCCCCCChhHHHHHHHhcCCCC
Confidence            64 42          3466 999999999999999999999977643

>KOG3608|consensus

Probab=99.21  E-value=3.7e-12  Score=126.92  Aligned_cols=131  Identities=12%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             CchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcC--CCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272          66 TLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKR--LAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~--~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |...+.....++.|.+.|+.++--.|..||.-|.++ ..|-.|.+.-+  ...+|.|..|.|.|.....|+.|++.|.. 
T Consensus       185 Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~-tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-  262 (467)
T KOG3608|consen  185 CTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTK-TKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-  262 (467)
T ss_pred             hhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccc-cHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-
Confidence            444555566666666777777777777777777776 45555555433  34567777777777777777777777753 


Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhh
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEE  221 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~  221 (575)
                       - |+|+.|+......+.|.+|++..|...+++                     +|+.|.+.|.+.++|.+|..+|.+
T Consensus       263 -~-ykCplCdmtc~~~ssL~~H~r~rHs~dkpf---------------------KCd~Cd~~c~~esdL~kH~~~HS~  317 (467)
T KOG3608|consen  263 -C-YKCPLCDMTCSSASSLTTHIRYRHSKDKPF---------------------KCDECDTRCVRESDLAKHVQVHSK  317 (467)
T ss_pred             -c-ccccccccCCCChHHHHHHHHhhhccCCCc---------------------cccchhhhhccHHHHHHHHHhccc
Confidence             3 778888877777888888888777777777                     999999999999999999998873

>KOG0490|consensus

Probab=99.20  E-value=5.2e-12  Score=125.48  Aligned_cols=64  Identities=27%  Similarity=0.357  Sum_probs=61.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..++||.||.|+..|+++|++.|+.++||+...|+.||..+++++.+|||||||||+||++..+
T Consensus        57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~  120 (235)
T KOG0490|consen   57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER  120 (235)
T ss_pred             hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence            4678999999999999999999999999999999999999999999999999999999999775

>KOG3608|consensus

Probab=99.11  E-value=1.8e-11  Score=122.11  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             ccccCchHHHhhhccCCCCCCC--CCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhh
Q psy4272          62 VATKTLPVIQELLSQRDGKPVG--KATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      .|+.|..-|.+..++-+|-+..  ....+|.|..|.|.|.+. ..|+.|++.|-.  -|+|+.|+......+.|.+|++.
T Consensus       209 ACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTe-klL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~  285 (467)
T KOG3608|consen  209 ACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATE-KLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRY  285 (467)
T ss_pred             ecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHH-HHHHHHHHHhhh--cccccccccCCCChHHHHHHHHh
Confidence            4667777666555444433222  346699999999999988 689999998864  59999999999999999999985


Q ss_pred             -hhCCCCCcccccccccccChhhHHHHHHhhccCcccc---------hhhhhhhhh---cccccCCCCCCCcchhhhhhc
Q psy4272         140 -ECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH---------FQAVQEELE---VTTKELSPGPKAENRHRFREF  206 (575)
Q Consensus       140 -H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~---------~~~~~~~~~---~~t~e~sp~p~~~C~~C~k~F  206 (575)
                       |...|| |+|+.|++.|.+.+.|.+|..+ |. +..|         ..+....+.   ....|..-.+.+.|..|.|.|
T Consensus       286 rHs~dkp-fKCd~Cd~~c~~esdL~kH~~~-HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~f  362 (467)
T KOG3608|consen  286 RHSKDKP-FKCDECDTRCVRESDLAKHVQV-HS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFF  362 (467)
T ss_pred             hhccCCC-ccccchhhhhccHHHHHHHHHh-cc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhh
Confidence             888999 9999999999999999999998 54 2222         111111111   112233334455677777777


Q ss_pred             cChhhhHhhhh
Q psy4272         207 LNEHRNLERNV  217 (575)
Q Consensus       207 ~~~~~l~~H~~  217 (575)
                      ..-..|..|..
T Consensus       363 t~G~~L~~HL~  373 (467)
T KOG3608|consen  363 TSGKSLSAHLM  373 (467)
T ss_pred             ccchhHHHHHH
Confidence            76666666654

>KOG0849|consensus

Probab=99.07  E-value=3.2e-10  Score=118.71  Aligned_cols=69  Identities=41%  Similarity=0.598  Sum_probs=63.6

Q ss_pred             cccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         317 NLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       317 ~~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ....++.+|.||+|+..|+..|++.|+.++||++..|++||.+++|++.+|+|||+|||+||+|.....
T Consensus       170 ~~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~~  238 (354)
T KOG0849|consen  170 YALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRDC  238 (354)
T ss_pred             ccccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccccc
Confidence            344577888899999999999999999999999999999999999999999999999999999987543

>KOG1146|consensus

Probab=98.93  E-value=4e-09  Score=121.17  Aligned_cols=64  Identities=25%  Similarity=0.397  Sum_probs=60.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ...+|+.||.++..||..|...|....||...+.|.|...++|..++|+|||||.|+|.||...
T Consensus       900 ~~~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~  963 (1406)
T KOG1146|consen  900 GMGRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL  963 (1406)
T ss_pred             hhhhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence            4567889999999999999999999999999999999999999999999999999999998654

>PHA00733 hypothetical protein

Probab=98.86  E-value=1.2e-09  Score=97.87  Aligned_cols=84  Identities=18%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCCCcchhhcchhHH------HHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccc
Q psy4272          83 GKATLPSPLKAKLSDYENKMKNV------RESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRA  156 (575)
Q Consensus        83 ~~~~~p~~C~~C~~~f~~~~~~L------~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F  156 (575)
                      ....+.+.|.+|.+.|... ..|      .+|+.+ .+.++|.|..||+.|.....|..|++.|  +.+ |.|.+|++.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~-~~C~~CgK~F  109 (128)
T PHA00733         35 TPEQKRLIRAVVKTLIYNP-QLLDESSYLYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHS-KVCPVCGKEF  109 (128)
T ss_pred             ChhhhhHHHHHHhhhccCh-hhhcchHHHHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcC--CcC-ccCCCCCCcc
Confidence            3345678899999888765 344      344444 4588999999999999999999999987  467 9999999999


Q ss_pred             cChhhHHHHHHhhcc
Q psy4272         157 RHKHDLKKHVTFKHA  171 (575)
Q Consensus       157 ~~~~~L~~H~r~~H~  171 (575)
                      .....|..|+...|.
T Consensus       110 ~~~~sL~~H~~~~h~  124 (128)
T PHA00733        110 RNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCHHHHHHHHHHhcC
Confidence            999999999998664

>PHA02768 hypothetical protein; Provisional

Probab=98.84  E-value=1.4e-09  Score=81.03  Aligned_cols=44  Identities=16%  Similarity=0.360  Sum_probs=39.8

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHH
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLK  163 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~  163 (575)
                      .|.|++||+.|.+..+|.+|+++|+  ++ |+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~-~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TN-LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--Cc-ccCCcccceecccceeE
Confidence            3899999999999999999999999  67 99999999999887764

>KOG1168|consensus

Probab=98.78  E-value=2.1e-09  Score=104.57  Aligned_cols=64  Identities=22%  Similarity=0.372  Sum_probs=59.7

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ...+||+||.+..-..+.||++|...+.|+.+....+|++|.|.+.+|+|||.|.|.|.||...
T Consensus       306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~  369 (385)
T KOG1168|consen  306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKR  369 (385)
T ss_pred             ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhh
Confidence            3467899999999999999999999999999999999999999999999999999999998554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.72  E-value=1.6e-08  Score=110.24  Aligned_cols=101  Identities=10%  Similarity=0.176  Sum_probs=81.9

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccC-------
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARH-------  158 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~-------  158 (575)
                      ...+.|..|++.|. . ..|..|+.+|+  ++|.|+ ||+.| .+..|..|+++|.++++ +.|.+|++.|..       
T Consensus       451 ~~H~~C~~Cgk~f~-~-s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v~~g~~~~d~  523 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-Q-GEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMVQAGGSAMDV  523 (567)
T ss_pred             ccCccCCCCCCccc-h-HHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCccccCccccch
Confidence            45578999999995 3 68999999985  899999 99765 66899999999999999 999999999952       


Q ss_pred             ---hhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhh
Q psy4272         159 ---KHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNV  217 (575)
Q Consensus       159 ---~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~  217 (575)
                         ...|..|... + +.+++                     .|..|++.|..+ .+..|.+
T Consensus       524 ~d~~s~Lt~HE~~-C-G~rt~---------------------~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        524 RDRLRGMSEHESI-C-GSRTA---------------------PCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             hhhhhhHHHHHHh-c-CCcce---------------------EccccCCeeeeh-hHHHHHH
Confidence               3478899887 3 66666                     999999888654 4555543

>KOG0775|consensus

Probab=98.64  E-value=7e-08  Score=93.87  Aligned_cols=51  Identities=24%  Similarity=0.433  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       330 ~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      |...-..+|+++|..++||+..++.+||+.+||+..||-.||+|||.++|-
T Consensus       183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa  233 (304)
T KOG0775|consen  183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA  233 (304)
T ss_pred             hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence            445567899999999999999999999999999999999999999999993

>PHA00733 hypothetical protein

Probab=98.58  E-value=3.7e-08  Score=88.30  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             HHHHHhhhcCCCCcccccccCccccChhhHHHH--hh---hhhCCCCCcccccccccccChhhHHHHHHhhccCcccchh
Q psy4272         104 NVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRH--IQ---YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQ  178 (575)
Q Consensus       104 ~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H--~r---~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~  178 (575)
                      .|..+-..-...+++.|.+|.+.|.....|..|  ++   .+.+.++ |.|..||+.|.....|..|++. |.  .++  
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~~Cgk~Fss~s~L~~H~r~-h~--~~~--  100 (128)
T PHA00733         27 ELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCPLCLMPFSSSVSLKQHIRY-TE--HSK--  100 (128)
T ss_pred             HhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCCCCCCcCCCHHHHHHHHhc-CC--cCc--
Confidence            343333333456789999999999888777666  22   2345788 9999999999999999999987 32  234  


Q ss_pred             hhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhh
Q psy4272         179 AVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEI  222 (575)
Q Consensus       179 ~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~  222 (575)
                                         .|..|++.|.....|..|+.....+
T Consensus       101 -------------------~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        101 -------------------VCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             -------------------cCCCCCCccCCHHHHHHHHHHhcCc
Confidence                               9999999999999999998765443

>PHA02768 hypothetical protein; Provisional

Probab=98.46  E-value=7e-08  Score=72.01  Aligned_cols=44  Identities=16%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHH
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLK  134 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~  134 (575)
                      .|.|.+||+.|... ++|..|+++|+  ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~-~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKR-KSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccH-HHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            58999999999988 79999999999  7999999999999887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.42  E-value=1.2e-07  Score=103.52  Aligned_cols=101  Identities=18%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             ccccCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccC----------hh
Q psy4272          62 VATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCR----------PY  131 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~----------~~  131 (575)
                      +|..|.+.+. ...+..|...+  ..++.|. |++.+. + ..|..|+++|.+++++.|.+|++.|..          ..
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~--Hkpv~Cp-Cg~~~~-R-~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s  528 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVF--HEPLQCP-CGVVLE-K-EQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLR  528 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhc--CCCccCC-CCCCcc-h-hHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhh
Confidence            5677777664 34445565554  2789999 997663 3 699999999999999999999999952          35


Q ss_pred             hHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         132 NLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       132 ~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      .|..|..++ |.++ +.|..||+.|..+ .|..|+...|.
T Consensus       529 ~Lt~HE~~C-G~rt-~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        529 GMSEHESIC-GSRT-APCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             hHHHHHHhc-CCcc-eEccccCCeeeeh-hHHHHHHHhhc
Confidence            799999885 9999 9999999998876 58888877664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.36  E-value=1.7e-07  Score=59.72  Aligned_cols=24  Identities=33%  Similarity=0.874  Sum_probs=13.5

Q ss_pred             HHHHhhhhhCCCCCccccccccccc
Q psy4272         133 LKRHIQYECGKAPQFPCLYCSYRAR  157 (575)
Q Consensus       133 L~~H~r~H~gekp~~~C~~Cgk~F~  157 (575)
                      |.+|+++|+|++| |.|++|++.|.
T Consensus         2 l~~H~~~H~~~k~-~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKP-YKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSS-EEESSSSEEES
T ss_pred             HHHHhhhcCCCCC-CCCCCCcCeeC
Confidence            4555555555555 55555555554

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.33  E-value=2.7e-07  Score=58.73  Aligned_cols=26  Identities=27%  Similarity=0.637  Sum_probs=24.0

Q ss_pred             HHHHHhhhcCCCCcccccccCccccC
Q psy4272         104 NVRESIRQKRLAQGLTCLQCGRSYCR  129 (575)
Q Consensus       104 ~L~~H~r~H~~~kp~~C~~Cgk~F~~  129 (575)
                      +|..|+++|+|++||.|++|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999974

...

>KOG3993|consensus

Probab=98.28  E-value=1.3e-07  Score=96.94  Aligned_cols=85  Identities=21%  Similarity=0.377  Sum_probs=71.0

Q ss_pred             CCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhh--------CCC----------------
Q psy4272          89 SPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC--------GKA----------------  144 (575)
Q Consensus        89 ~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~--------gek----------------  144 (575)
                      |-|..|...|..-. .|.+|.-.....--|+|..|+|.|....+|..|+|+|.        |..                
T Consensus       268 yiCqLCK~kYeD~F-~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  268 YICQLCKEKYEDAF-ALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHhhhhHH-HHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            78999999999884 78888755444455999999999999999999999994        111                


Q ss_pred             ---------CCcccccccccccChhhHHHHHHhhccCccc
Q psy4272         145 ---------PQFPCLYCSYRARHKHDLKKHVTFKHAAYLD  175 (575)
Q Consensus       145 ---------p~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~  175 (575)
                               - |.|.+|+|.|.+...|++|+-+||.....
T Consensus       347 rsg~dss~gi-~~C~~C~KkFrRqAYLrKHqlthq~~~~~  385 (500)
T KOG3993|consen  347 RSGDDSSSGI-FSCHTCGKKFRRQAYLRKHQLTHQRAPLA  385 (500)
T ss_pred             ccCCcccCce-eecHHhhhhhHHHHHHHHhHHhhhccccc
Confidence                     2 88999999999999999999997765543

>KOG0774|consensus

Probab=98.17  E-value=4.3e-06  Score=80.73  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=55.6

Q ss_pred             CCCCcccCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         323 TGRFRQVYSSHQIVELEKEFR---LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~---~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      .||+|..|+..-.++|..+|.   .++||+...+++||.+.|++..||-.||.|.|-+.||.-
T Consensus       188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~  250 (334)
T KOG0774|consen  188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM  250 (334)
T ss_pred             HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence            467888999999999999997   578999999999999999999999999999999998854

>KOG3993|consensus

Probab=98.15  E-value=6.8e-07  Score=91.88  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             ccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccC-------cccchhh----hhhhhhc
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA-------YLDHFQA----VQEELEV  186 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~-------~~~~~~~----~~~~~~~  186 (575)
                      |.|..|...|.....|.+|.-.-.-..- |+|..|+|.|+-..+|..|.|.|...       ..+-...    .......
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            9999999999999999999732111123 99999999999999999999994321       1111000    0000011


Q ss_pred             ccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhhhccc
Q psy4272         187 TTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHK  226 (575)
Q Consensus       187 ~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~~~  226 (575)
                      .....+.+..+.|.+|+|.|.+...|..|+.+|......+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence            1122233457899999999999999999999997754433

>PHA00616 hypothetical protein

Probab=98.08  E-value=1.4e-06  Score=61.89  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCCCccccccc
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCS  153 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cg  153 (575)
                      ||+|..||+.|..+..|.+|++.|+|+++ +.|+.--
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~-~~~~~~y   36 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK-LTLEYFY   36 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc-cceeEEE
Confidence            58899999999999999999999999998 8887643

>KOG0490|consensus

Probab=98.06  E-value=3.4e-06  Score=83.71  Aligned_cols=65  Identities=38%  Similarity=0.607  Sum_probs=61.0

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ...+.++.|+.+...|+..|...|..+.+|+...++.|+..+|+++++|+|||||+|++.++...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~  213 (235)
T KOG0490|consen  149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR  213 (235)
T ss_pred             CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence            34678899999999999999999999999999999999999999999999999999999998665

>KOG1146|consensus

Probab=98.04  E-value=1.4e-05  Score=92.90  Aligned_cols=274  Identities=15%  Similarity=0.134  Sum_probs=146.9

Q ss_pred             CCCCcchhhcchhHHHHHhh-hcCCCCcccccccCccccChhhHHHHhhh-hh------------------------CCC
Q psy4272          91 LKAKLSDYENKMKNVRESIR-QKRLAQGLTCLQCGRSYCRPYNLKRHIQY-EC------------------------GKA  144 (575)
Q Consensus        91 C~~C~~~f~~~~~~L~~H~r-~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~-H~------------------------gek  144 (575)
                      |..|+..+...+ .+-.|+. .|.-.|-|+|+.|+..|+....|..|+|. |.                        +.+
T Consensus       439 ~~~~e~~~~s~r-~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  439 LTKAEPLLESKR-SLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             ccchhhhhhhhc-ccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            444444444442 3333333 36666889999999999999999999987 21                        336


Q ss_pred             CCcccccccccccChhhHHHHHHhh-ccCcccchh-------hhh----hhhh---------cccccCCCCCCCcchhhh
Q psy4272         145 PQFPCLYCSYRARHKHDLKKHVTFK-HAAYLDHFQ-------AVQ----EELE---------VTTKELSPGPKAENRHRF  203 (575)
Q Consensus       145 p~~~C~~Cgk~F~~~~~L~~H~r~~-H~~~~~~~~-------~~~----~~~~---------~~t~e~sp~p~~~C~~C~  203 (575)
                      + |.|..|...|..+.+|..|+..- |..+.....       +..    ....         ..+.+..+.+...|+.|.
T Consensus       518 p-~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~  596 (1406)
T KOG1146|consen  518 P-YPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCS  596 (1406)
T ss_pred             c-ccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhc
Confidence            7 99999999999999999998752 222110000       000    0000         001112335667899998


Q ss_pred             hhccChhhhHhhhhhhhhhhc-cccCCCCCCCCCcc-ccccccCCCCCcccccccCCCcchHHHHHHHHHHhhhcCCCCC
Q psy4272         204 REFLNEHRNLERNVSHEEIRT-HKKHEQPRKESSYK-ETENTQFNSETNDLSKLEEPNKTSSILLAHLQQVQKDLGLGAS  281 (575)
Q Consensus       204 k~F~~~~~l~~H~~th~~~~~-~~~~~~~~~~ss~~-~~~~~~~~s~~~~~s~~e~p~~tss~~lsh~~e~q~~~g~g~S  281 (575)
                      ..-.-..+|..|+..-..... +..-.+....+... .......+. +......    .. ..+...+.  .-+..+...
T Consensus       597 yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp~-tps~~~~----s~-~~l~qkl~--l~~~~~e~~  668 (1406)
T KOG1146|consen  597 YETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLPF-TPSSPPS----SD-YELSQKLE--LPDLSLEVA  668 (1406)
T ss_pred             chhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCCC-CCCCCcc----cc-chhhhhhc--ccccccccc
Confidence            776666677777643211111 11000100000000 000111110 0000000    00 00000000  000000000


Q ss_pred             CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q psy4272         282 DSLSSEKDIP---SNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSK  358 (575)
Q Consensus       282 ~s~ss~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~  358 (575)
                      ....+..+..   ...|....|....+.+        ......+.++-|+.+-..++..|-++|..+.-|+...+..|..
T Consensus       669 a~~as~~~~~~~~~~~~~~~aPt~s~~g~--------~~~~~~~~~~~~~~~~~~aa~~l~~a~~~~~sps~k~~~civc  740 (1406)
T KOG1146|consen  669 AKPASGLDGQLQLIRADPFLAPTGSEVGG--------GESLSPRDKLLRLTILPEAAMILGRAYMQDNSPSLKVFDCIVC  740 (1406)
T ss_pred             ccccccccchhhhccCCcccCCCCCCCCC--------CCCCCcccccCcccccHHHHhhhhhcccCCCCHHHHHHHHhhh
Confidence            0011110000   1222222222222222        1122345678889999999999999999999999999999999


Q ss_pred             HhCCChhhhhhcccchhhhhhhcC
Q psy4272         359 ELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       359 ~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ....+.+++++||+|-|.+.+|..
T Consensus       741 d~~st~~l~~l~~h~~~~rs~ke~  764 (1406)
T KOG1146|consen  741 DVFSTDRLDQLWFHNTRERSRKEQ  764 (1406)
T ss_pred             hhhhhhhHHHHhhcchhhhhhhhc
Confidence            999999999999999999988866

>PHA00732 hypothetical protein

Probab=97.98  E-value=4e-06  Score=68.42  Aligned_cols=45  Identities=24%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             cccccccCccccChhhHHHHhhh-hhCCCCCcccccccccccChhhHHHHHHh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQY-ECGKAPQFPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~-H~gekp~~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      ||.|..||+.|.....|+.|++. |.   + +.|+.||+.|.   .|..|.++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~-~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L-TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C-CccCCCCCEeC---Chhhhhcc
Confidence            47788888888888888888774 54   4 67888888776   46777755

>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants []

Probab=97.97  E-value=4.1e-06  Score=59.01  Aligned_cols=34  Identities=32%  Similarity=0.637  Sum_probs=28.8

Q ss_pred             hCCCCCHHHHHHHHHHhCCChhhhhhcccchhhh
Q psy4272         344 LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK  377 (575)
Q Consensus       344 ~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak  377 (575)
                      .++||+..++++||..+||+..||..||-|.|.+
T Consensus         7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR   40 (40)
T PF05920_consen    7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR   40 (40)
T ss_dssp             TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence            4789999999999999999999999999999864

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.

>KOG2252|consensus

Probab=97.94  E-value=9.2e-06  Score=86.79  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=54.3

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKL  378 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~  378 (575)
                      ...||.|.+||..|.+.|...|..+++|+....+.|+.+|||..+.|..||-|-|.+.
T Consensus       418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs  475 (558)
T KOG2252|consen  418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS  475 (558)
T ss_pred             ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence            3567889999999999999999999999999999999999999999999999987664

>PHA00732 hypothetical protein

Probab=97.64  E-value=3.4e-05  Score=62.96  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhh-cCCCCcccccccCccccChhhHHHHhhhhhC
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQ-KRLAQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~-H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ||.|..|++.|... ..|+.|++. |.+   +.|..||+.|.   .|..|.+++..
T Consensus         1 py~C~~Cgk~F~s~-s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTL-FALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCH-HHHHHHhhcccCC---CccCCCCCEeC---ChhhhhcccCC
Confidence            68999999999988 799999984 654   68999999998   58889876554

>PHA00616 hypothetical protein

Probab=97.51  E-value=4.9e-05  Score=54.15  Aligned_cols=39  Identities=15%  Similarity=-0.064  Sum_probs=34.1

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccc
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSY  127 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F  127 (575)
                      ||.|..||+.|... +.|..|++.|+|++++.|+.--..|
T Consensus         1 pYqC~~CG~~F~~~-s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKK-KEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhH-HHHHHHHHHhcCCCccceeEEEEEE
Confidence            68999999999988 7999999999999999998643333

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.42  E-value=0.00018  Score=54.44  Aligned_cols=49  Identities=27%  Similarity=0.579  Sum_probs=34.5

Q ss_pred             ccccccCccccChhhHHHHhhh-hhCC-CCCcccccccccccChhhHHHHHHhhc
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQY-ECGK-APQFPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~-H~ge-kp~~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |.|++|++.| ....|..|... |..+ +. +.|++|...+.  .+|..|+..+|
T Consensus         3 f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~-v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKGF-SESSLVEHCEDEHRSESKN-VVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCcc-CHHHHHHHHHhHCcCCCCC-ccCCCchhhhh--hHHHHHHHHhc
Confidence            7888888844 45678888654 6554 45 88888887654  37888887765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.35  E-value=0.0001  Score=45.20  Aligned_cols=23  Identities=39%  Similarity=0.829  Sum_probs=13.0

Q ss_pred             ccccccCccccChhhHHHHhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |.|.+|++.|..+..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            45555555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.18  E-value=0.00011  Score=73.20  Aligned_cols=53  Identities=25%  Similarity=0.468  Sum_probs=44.9

Q ss_pred             CCCcccccc--cCccccChhhHHHHhhh-hh------------------CCCCCcccccccccccChhhHHHHHH
Q psy4272         114 LAQGLTCLQ--CGRSYCRPYNLKRHIQY-EC------------------GKAPQFPCLYCSYRARHKHDLKKHVT  167 (575)
Q Consensus       114 ~~kp~~C~~--Cgk~F~~~~~L~~H~r~-H~------------------gekp~~~C~~Cgk~F~~~~~L~~H~r  167 (575)
                      ++|||+|++  |.|.++....|+-|+.- |.                  ..|| |+|++|+|+|.....|+.|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KP-YrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCc-eeccccchhhccCccceeccc
Confidence            359999988  99999999999999863 31                  2388 999999999999999998864

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.02  E-value=0.00031  Score=43.05  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=21.1

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|..|++.|..+..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.85  E-value=0.00057  Score=41.90  Aligned_cols=23  Identities=30%  Similarity=0.678  Sum_probs=11.1

Q ss_pred             cccccccccccChhhHHHHHHhh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      |.|++|++.|.....|..|++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555543

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.71  E-value=0.0018  Score=48.85  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             CCCCCCCcchhhcchhHHHHHhh-hcCCC-CcccccccCccccChhhHHHHhhhhh
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIR-QKRLA-QGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r-~H~~~-kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      .|.|++|++.|..  ..|..|.. .|..+ +.+.|++|...+..  +|.+|+..+.
T Consensus         2 ~f~CP~C~~~~~~--~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGFSE--SSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCccCH--HHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHHhc
Confidence            4899999996553  47877765 46654 57999999987664  8999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.53  E-value=0.0013  Score=41.96  Aligned_cols=23  Identities=22%  Similarity=0.651  Sum_probs=11.2

Q ss_pred             ccccccCccccChhhHHHHhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |.|..|++.|.....|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            44455555555555555554443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.52  E-value=0.0016  Score=39.86  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=19.1

Q ss_pred             ccccccCccccChhhHHHHhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |.|.+|++.|.....|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.43  E-value=0.0012  Score=42.15  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             cccccccccccChhhHHHHHHhhc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |.|..|++.|.....|..|++.|+
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            899999999999999999998854

>PRK04860 hypothetical protein; Provisional

Probab=96.31  E-value=0.0017  Score=60.47  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=33.9

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKH  160 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~  160 (575)
                      +|.|. |++   ....+++|.++|+|+++ |.|..|++.|....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEec
Confidence            59998 997   67788999999999999 99999999887654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.94  E-value=0.006  Score=44.57  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=17.1

Q ss_pred             CCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         114 LAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       114 ~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      .+.|..|++|+..+.+..+|++|+.++++.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45566677777777666677777666665554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.90  E-value=0.0046  Score=52.30  Aligned_cols=74  Identities=16%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhh
Q psy4272          90 PLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus        90 ~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      .|.+|+..|... ..|..|+....+-.   .. ....+.....+..+.+.-.. .. +.|..|++.|.....|..|++.+
T Consensus         1 ~C~~C~~~f~~~-~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~~~~~-~~-~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSV-DDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLRKKVK-ES-FRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SS-EEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccc-cccccccccccccc---cc-cccccccccccccccccccC-CC-CCCCccCCCCcCHHHHHHHHcCc
Confidence            489999999886 67888886533321   11 11222233444444443222 25 89999999999999999999975


Q ss_pred             c
Q psy4272         170 H  170 (575)
Q Consensus       170 H  170 (575)
                      +
T Consensus        74 ~   74 (100)
T PF12756_consen   74 H   74 (100)
T ss_dssp             T
T ss_pred             c
Confidence            3

>smart00355 ZnF_C2H2 zinc finger

Probab=95.73  E-value=0.0079  Score=37.21  Aligned_cols=22  Identities=27%  Similarity=0.696  Sum_probs=10.7

Q ss_pred             cccccCccccChhhHHHHhhhh
Q psy4272         119 TCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       119 ~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      .|..|++.|.....|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4444555555555555554443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.48  E-value=0.0053  Score=51.91  Aligned_cols=26  Identities=12%  Similarity=-0.083  Sum_probs=21.5

Q ss_pred             CcchhhhhhccChhhhHhhhhhhhhh
Q psy4272         197 AENRHRFREFLNEHRNLERNVSHEEI  222 (575)
Q Consensus       197 ~~C~~C~k~F~~~~~l~~H~~th~~~  222 (575)
                      ..|..|++.|.....|..|+..+...
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~~H~   76 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSKHHK   76 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHTTTT
T ss_pred             CCCCccCCCCcCHHHHHHHHcCccCC
Confidence            48999999999999999999876443

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=95.34  E-value=0.0073  Score=60.59  Aligned_cols=71  Identities=14%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             CCCCCccccc--ccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhh
Q psy4272         142 GKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERN  216 (575)
Q Consensus       142 gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~  216 (575)
                      ++|| |+|++  |.|.|.....|+.|+.--|...+....-.....+....+.   -.+.|+.|+|.|.+-..|..|.
T Consensus       346 d~Kp-ykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~---KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         346 DGKP-YKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKD---KPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCce-ecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccC---CceeccccchhhccCccceecc
Confidence            4589 99987  9999999999999986434332221111111111222222   2348999999999999998884

>PRK04860 hypothetical protein; Provisional

Probab=95.33  E-value=0.0066  Score=56.51  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=34.2

Q ss_pred             CCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChh
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPY  131 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~  131 (575)
                      -+|.|. |++    ....+++|.++|+++++|.|..|++.|....
T Consensus       118 ~~Y~C~-C~~----~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE----HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC----eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            479998 987    3357899999999999999999999987654

>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A

Probab=95.23  E-value=0.014  Score=43.85  Aligned_cols=41  Identities=22%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             HHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchh
Q psy4272         335 IVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR  375 (575)
Q Consensus       335 l~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrR  375 (575)
                      +..|+++|....++.......|..+.+|+..+|+.||-.|+
T Consensus        10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~   50 (56)
T PF11569_consen   10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM   50 (56)
T ss_dssp             -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence            45699999999999999999999999999999999996543

>smart00355 ZnF_C2H2 zinc finger

Probab=95.14  E-value=0.015  Score=35.91  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|..|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            6899999999999999999986

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.90  E-value=0.0084  Score=64.08  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=55.1

Q ss_pred             CCCCCCCCcchhhcchhHHHHHhh--hcCCC--Cccccc--ccCccccChhhHHHHhhhhhCCCCCccccc--ccccccC
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESIR--QKRLA--QGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRARH  158 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~r--~H~~~--kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~  158 (575)
                      .++.|..|...|... ..+..|.+  .|+++  +++.|.  .|++.|.+...+.+|..+|++.++ +.|..  |.+.+..
T Consensus       288 ~~~~~~~~~~~~s~~-~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  365 (467)
T COG5048         288 LPIKSKQCNISFSRS-SPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP-AKEKLLNSSSKFSP  365 (467)
T ss_pred             cCCCCccccCCcccc-ccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc-cccccccCcccccc
Confidence            567888888888777 67888888  78888  888888  688888888888888888888877 77754  4444444


Q ss_pred             hh
Q psy4272         159 KH  160 (575)
Q Consensus       159 ~~  160 (575)
                      ..
T Consensus       366 ~~  367 (467)
T COG5048         366 LL  367 (467)
T ss_pred             cc
Confidence            43

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.83  E-value=0.015  Score=42.50  Aligned_cols=38  Identities=18%  Similarity=0.499  Sum_probs=23.8

Q ss_pred             HHHhhhhh-CCCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         134 KRHIQYEC-GKAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       134 ~~H~r~H~-gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      ..+.+.|. .+.| ..|++|+..+.+..+|++|+.++|..
T Consensus        12 ~~~~k~~~~S~~P-atCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   12 TKKPKSKSQSEQP-ATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             ----CCCCTTS---EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             hhHHHHhhccCCC-CCCCcchhhccchhhHHHHHHHHhcc
Confidence            45555443 4667 99999999999999999999986653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.85  E-value=0.036  Score=34.47  Aligned_cols=22  Identities=23%  Similarity=0.653  Sum_probs=11.9

Q ss_pred             ccccccCccccChhhHHHHhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      |.|.+|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3455555555555555555543

>KOG0773|consensus

Probab=93.41  E-value=0.11  Score=54.67  Aligned_cols=60  Identities=25%  Similarity=0.415  Sum_probs=49.3

Q ss_pred             CCCCCcccCCHHHHHHHHHHh-h--hCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEF-R--LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F-~--~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ..+|.+..+......+|+.+. +  ..+||+..++..||.++||+..||..||-|.|-+..+-
T Consensus       238 ~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p  300 (342)
T KOG0773|consen  238 SKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKP  300 (342)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCc
Confidence            355666688888888888773 3  25799999999999999999999999999998775543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.11  E-value=0.052  Score=33.45  Aligned_cols=23  Identities=39%  Similarity=0.863  Sum_probs=10.2

Q ss_pred             cccccccccccChhhHHHHHHhhc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |+|..|+.... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            34555554444 445555555433

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.61  E-value=0.054  Score=33.62  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=20.6

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|.+|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999976

>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere

Probab=92.59  E-value=0.17  Score=37.95  Aligned_cols=46  Identities=15%  Similarity=0.355  Sum_probs=35.8

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccch
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNR  374 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNr  374 (575)
                      ||+|..+|-++-..+-..++...     ...+||..+|++..+|..|..|+
T Consensus         1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k   46 (53)
T PF04218_consen    1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK   46 (53)
T ss_dssp             SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred             CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence            57889999998888888888776     57789999999999999999885

Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=92.29  E-value=0.1  Score=32.09  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=17.0

Q ss_pred             ccccccCccccChhhHHHHhhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |+|..|+.... ...|.+|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67888988777 788899988765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.84  E-value=0.069  Score=34.01  Aligned_cols=22  Identities=23%  Similarity=0.612  Sum_probs=14.7

Q ss_pred             ccccccCccccChhhHHHHhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=90.39  E-value=0.19  Score=51.26  Aligned_cols=127  Identities=19%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             CCCCCCCcchhhcchhHHHHHhh-hcC---C----------------C--CcccccccCccccChhhHHHHhhh--hhCC
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIR-QKR---L----------------A--QGLTCLQCGRSYCRPYNLKRHIQY--ECGK  143 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r-~H~---~----------------~--kp~~C~~Cgk~F~~~~~L~~H~r~--H~ge  143 (575)
                      .-.|-+|...+...++..-.|+- +|.   |                +  ..+.|-.|.|.|..+..|+.|||.  |...
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri  223 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI  223 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence            34799998877666666656653 232   1                1  237999999999999999999974  4311


Q ss_pred             CCC-----------------------------------------------------cccccccccccChhhHHHHHHhhc
Q psy4272         144 APQ-----------------------------------------------------FPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       144 kp~-----------------------------------------------------~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      .|.                                                     .+|-+|....-....|..||++.|
T Consensus       224 nPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  224 NPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence            100                                                     378999998888999999999877


Q ss_pred             cCc---------ccchhhhhhhhhc-ccccCCCCCCCcchhhhhhccChhhhHhhhhhh
Q psy4272         171 AAY---------LDHFQAVQEELEV-TTKELSPGPKAENRHRFREFLNEHRNLERNVSH  219 (575)
Q Consensus       171 ~~~---------~~~~~~~~~~~~~-~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th  219 (575)
                      .-.         +.+.++....... .++     -...|-.|.-.|-.+..|+.|+..+
T Consensus       304 e~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~-----~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  304 EFDLLKIQSDYSLNFYQRVRVINYIRKQK-----KKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HhhHHhhccccccchhhhhhHHHHHHHHh-----hccccccccccccCcchhhhhcccc
Confidence            521         2222222221111 111     2337999999999999999998654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=89.87  E-value=0.084  Score=33.60  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            8899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.84  E-value=0.096  Score=55.88  Aligned_cols=59  Identities=27%  Similarity=0.560  Sum_probs=53.3

Q ss_pred             CcccccccCccccChhhHHHHhh--hhhCC--CCCcccc--cccccccChhhHHHHHHhhccCcccc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQ--YECGK--APQFPCL--YCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r--~H~ge--kp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .++.|..|...|.+...|.+|.+  .|+++  ++ +.|.  .|++.|.+...+..|..+ |.+...+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~  352 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP-FSCPYSLCGKLFSRNDALKRHILL-HTSISPA  352 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCc-eeeeccCCCccccccccccCCccc-ccCCCcc
Confidence            57999999999999999999999  89999  99 9999  799999999999999998 5554444

>KOG2231|consensus

Probab=89.16  E-value=0.46  Score=53.46  Aligned_cols=22  Identities=27%  Similarity=0.677  Sum_probs=13.0

Q ss_pred             ccccccccccChhhHHHHHHhh
Q psy4272         148 PCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       148 ~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      .|.+|...|.....|.+|++.+
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~  205 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFD  205 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccc
Confidence            4556666666666666666553

>KOG2893|consensus

Probab=88.90  E-value=0.13  Score=49.84  Aligned_cols=47  Identities=23%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             ccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       120 C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      |=+|.+-|.....|..|++.    |- |+|.+|.|.....-.|..|-...|.
T Consensus        13 cwycnrefddekiliqhqka----kh-fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KH-FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeecccccchhhhhhhhhhh----cc-ceeeeehhhhccCCCceeehhhhhh
Confidence            66788888888888777764    34 8888888776666666666333343

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=87.48  E-value=0.42  Score=29.96  Aligned_cols=19  Identities=32%  Similarity=0.700  Sum_probs=10.6

Q ss_pred             ccccccccccChhhHHHHHH
Q psy4272         148 PCLYCSYRARHKHDLKKHVT  167 (575)
Q Consensus       148 ~C~~Cgk~F~~~~~L~~H~r  167 (575)
                      .|..||+.| ....|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4445555554

>KOG2231|consensus

Probab=87.12  E-value=0.7  Score=52.05  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             cccccCccccChhhHHHHhhhhhCCCCCccccccc------ccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCC
Q psy4272         119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCS------YRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELS  192 (575)
Q Consensus       119 ~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cg------k~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~s  192 (575)
                      .|..|...|.....|.+|++.++     |.|.+|.      .-|..-..|..|.|.+|---- .                
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE-~----------------  241 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCE-E----------------  241 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcCcccc-c----------------
Confidence            58888888888888888888654     6777774      357778899999988663100 0                


Q ss_pred             CCCCCcchhhhhhccChhhhHhhhhhhhhhhccccC
Q psy4272         193 PGPKAENRHRFREFLNEHRNLERNVSHEEIRTHKKH  228 (575)
Q Consensus       193 p~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~~~~~  228 (575)
                        ....|..+...|..+.+|..|...+..++.|...
T Consensus       242 --~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  242 --EFCRTKKFYVAFELEIELKAHNRFIQHEKCYICR  275 (669)
T ss_pred             --cccccceeeehhHHHHHHHhhccccchheeccCC
Confidence              0013344444455666677666544444444443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=86.59  E-value=0.51  Score=29.56  Aligned_cols=20  Identities=35%  Similarity=0.921  Sum_probs=14.1

Q ss_pred             ccccccCccccChhhHHHHhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      ..|..||+.| ....|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3578888888 5566777765

>smart00451 ZnF_U1 U1-like zinc finger

Probab=82.27  E-value=0.87  Score=30.52  Aligned_cols=21  Identities=14%  Similarity=0.572  Sum_probs=12.0

Q ss_pred             ccccccCccccChhhHHHHhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      |.|.+|++.|.....+..|+.
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            556666666665555555553

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.64  E-value=1  Score=39.06  Aligned_cols=30  Identities=27%  Similarity=0.598  Sum_probs=19.2

Q ss_pred             ccccccCccccChhhHHHHhhhhhCCCCCcccccccccccCh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHK  159 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~  159 (575)
                      ..|..||++|.-.           +..| -.|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~P-ivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDP-IVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCC-ccCCCCCCccCcc
Confidence            4677777777542           1245 6777777777665

The function of members of this family is unknown.

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.25  E-value=1.8  Score=37.67  Aligned_cols=91  Identities=12%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             CCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhh-CCCC-----------Ccccccccccc
Q psy4272          89 SPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC-GKAP-----------QFPCLYCSYRA  156 (575)
Q Consensus        89 ~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~-gekp-----------~~~C~~Cgk~F  156 (575)
                      |.|+.|+......               |-.|++||-......+|.|.-. |. -.++           ...|--|.+.|
T Consensus         2 Y~CPrC~skvC~L---------------P~~CpiCgLtLVss~HLARSyH-HLfPl~~f~ev~~~~~~~~~~C~~C~~~f   65 (112)
T TIGR00622         2 YFCPQCRAKVCEL---------------PVECPICGLTLILSTHLARSYH-HLFPLKAFQEIPLEEYNGSRFCFGCQGPF   65 (112)
T ss_pred             ccCCCCCCCccCC---------------CCcCCcCCCEEeccchHHHhhh-ccCCCcccccccccccCCCCcccCcCCCC
Confidence            6677776655443               5678888888877777765421 10 1111           01377777777


Q ss_pred             cChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhh
Q psy4272         157 RHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSH  219 (575)
Q Consensus       157 ~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th  219 (575)
                      .......       .+                 +.+....+.|..|...|-..-+...|...|
T Consensus        66 ~~~~~~~-------~~-----------------~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        66 PKPPVSP-------FD-----------------ELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             CCccccc-------cc-----------------ccccccceeCCCCCCccccccchhhhhhcc
Confidence            6543111       00                 011122347888888888777777776655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	575
1puf_A	77	Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo		9e-13
1b8i_A	81	Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX		4e-12
2lp0_A	60	The Solution Structure Of Homeodomain-Protein Compl		2e-11
2r5y_A	88	Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HO		2e-11
1ahd_P	68	Determination Of The Nmr Solution Structure Of An A		2e-11
9ant_A	62	Antennapedia Homeodomain-Dna Complex Length = 62		3e-11
1hom_A	68	Determination Of The Three-Dimensional Structure Of		3e-11
1ftz_A	70	Nuclear Magnetic Resonance Solution Structure Of Th		6e-11
2djn_A	70	The Solution Structure Of The Homeobox Domain Of Hu		3e-10
1san_A	62	The Des(1-6)antennapedia Homeodomain: Comparison Of		3e-10
3hdd_A	60	Engrailed Homeodomain Dna Complex Length = 60		1e-09
1hdd_C	61	Crystal Structure Of An Engrailed Homeodomain-Dna C		1e-09
2h1k_A	63	Crystal Structure Of The Pdx1 Homeodomain In Comple		1e-09
1p7j_A	59	Crystal Structure Of Engrailed Homeodomain Mutant K		3e-09
1p7i_A	59	Crystal Structure Of Engrailed Homeodomain Mutant K		3e-09
1ztr_A	61	Solution Structure Of Engrailed Homeodomain L16a Mu		3e-09
2hdd_A	61	Engrailed Homeodomain Q50k Variant Dna Complex Leng		4e-09
2cra_A	70	Solution Structure Of The Homeobox Domain Of Human		4e-09
1du0_A	57	Engrailed Homeodomain Q50a Variant Dna Complex Leng		7e-09
2e1o_A	70	Solution Structure Of Rsgi Ruh-028, A Homeobox Doma		8e-09
1enh_A	54	Structural Studies Of The Engrailed Homeodomain Len		9e-09
1b72_A	97	Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le		1e-08
2m34_A	71	Nmr Structure Of The Homeodomain Transcription Fact		2e-08
2dmt_A	80	Solution Structure Of The Homeobox Domain Of Homeob		8e-08
2hos_A	63	Phage-selected Homeodomain Bound To Unmodified Dna		9e-08
2l9r_A	69	Solution Nmr Structure Of Homeobox Domain Of Homeob		2e-07
1jgg_A	60	Even-Skipped Homeodomain Complexed To At-Rich Dna L		3e-07
1ig7_A	58	Msx-1 HomeodomainDNA COMPLEX STRUCTURE Length = 58		3e-07
3a03_A	56	Crystal Structure Of Hox11l1 Homeodomain Length = 5		3e-07
2l7z_A	73	Nmr Structure Of A13 Homedomain Length = 73		6e-07
2ld5_A	67	Solution Nmr-Derived Complex Structure Of Hoxa13 Dn		7e-07
3a01_A	93	Crystal Structure Of Aristaless And Clawless Homeod		7e-07
3lnq_A	58	Structure Of Aristaless Homeodomain In Complex With		8e-07
3a01_B	67	Crystal Structure Of Aristaless And Clawless Homeod		8e-07
2p81_A	44	Engrailed Homeodomain Helix-Turn-Helix Motif Length		2e-06
1ftt_A	68	Thyroid Transcription Factor 1 Homeodomain (Rattus		3e-06
1fjl_A	81	Homeodomain From The Drosophila Paired Protein Boun		4e-06
3rkq_A	58	Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna Lengt		6e-06
3a02_A	60	Crystal Structure Of Aristaless Homeodomain Length		8e-06
1zq3_P	68	Nmr Solution Structure Of The Bicoid Homeodomain Bo		1e-05
2k40_A	67	Nmr Structure Of Hesx-1 Homeodomain Double Mutant R		3e-05
1qry_A	80	Homeobox Protein Vnd (Ventral Nervous System Defect		3e-05
1nk2_P	77	VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES		3e-05
2kt0_A	84	Solution Structure Of Human Stem Cell Transcription		4e-05
2m0c_A	75	Solution Nmr Structure Of Homeobox Domain Of Human		1e-04
2vi6_A	62	Crystal Structure Of The Nanog Homeodomain Length =		1e-04
2dmu_A	70	Solution Structure Of The Homeobox Domain Of Homeob		2e-04
2cue_A	80	Solution Structure Of The Homeobox Domain Of The Hu		4e-04

>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 77

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           Y+ HQ +ELEKEF    YL  DRR  +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 20  YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74

>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 81

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R RQ Y+ +Q +ELEKEF   +YL   RR  ++  L LTERQIKIWFQNRRMKLK+
Sbjct: 22  RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77

>pdb|2LP0|A Chain A, The Solution Structure Of Homeodomain-Protein Complex Length = 60

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           Y+ +Q +ELEKEF    YL  DRR  +++ L LTERQ+KIWFQNRRMK+K+ +
Sbjct: 8   YTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMN 60

>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd Site Length = 88

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 40/60 (66%)
Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           T R R  Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+ H
Sbjct: 28  TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87

>pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An Antennapedia Homeodomain-Dna Complex Length = 68

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R RQ Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+
Sbjct: 4   RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59

>pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex Length = 62

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R RQ Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+
Sbjct: 5   RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 60

>pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The Antennapedia Homeodomain From Drosophila In Solution By 1h Nuclear Magnetic Resonance Spectroscopy Length = 68

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R RQ Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+
Sbjct: 4   RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 59

>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi Tarazu Homeodomain From Drosophila And Comparison With The Antennapedia Homeodomain Length = 70

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           ++ R RQ Y+ +Q +ELEKEF    Y+   RR  ++  L L+ERQIKIWFQNRRMK K+
Sbjct: 2   DSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKK 60

>pdb|2DJN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Dlx-5 Length = 70

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R +YSS Q+  L++ F+ T YL    R  L+  LGLT+ Q+KIWFQN+R K+K++ P 
Sbjct: 11  RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68

>pdb|1SAN|A Chain A, The Des(1-6)antennapedia Homeodomain: Comparison Of The Nmr Solution Structure And The Dna Binding Affinity With The Intact Antennapedia Homeodomain Length = 62

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 36/52 (69%)
Query: 329 VYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
            Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+
Sbjct: 2   TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 53

>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex Length = 60

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN+R K+K++
Sbjct: 5   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS 59

>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex At 2.8 Angstroms Resolution: A Framework For Understanding Homeodomain-Dna Interactions Length = 61

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN+R K+K++
Sbjct: 7   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS 61

>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With Dna Length = 63

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  Y+  Q++ELEKEF    Y+   RR  L+  L LTER IKIWFQNRRMK K+
Sbjct: 5   RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60

>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e Length = 59

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN R K+K++
Sbjct: 5   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNERAKIKKS 59

>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a Length = 59

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN R K+K++
Sbjct: 5   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAKIKKS 59

>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant Length = 61

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+   ++EF    YL   RR+ LS ELGL E QIKIWFQN+R K++R+
Sbjct: 7   RTAFSSEQLARAKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIRRS 61

>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex Length = 61

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWF+N+R K+K++
Sbjct: 7   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61

>pdb|2CRA|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeo Box B13 Length = 70

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 322 NTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           ++GR +++ YS  Q+ ELE+E+    ++  D+R+ +S    L+ERQI IWFQNRR+K K+
Sbjct: 5   SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64
Query: 381 THPD 384
           + P 
Sbjct: 65  SGPS 68

>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex Length = 57

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWF N+R K+K++
Sbjct: 3   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFANKRAKIKKS 57

>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From Human Cdna Length = 70

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           +S+ Q +ELEK+F    YL    RK L+K L L+ERQ+K WFQNRR K +R+ P
Sbjct: 14  FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67

>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain Length = 54

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKL 378
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN+R K+
Sbjct: 3   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 54

>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 97

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 294 LDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRR 353
            D  ++ + PP ++     ++ +  L   +G  R  +++ Q+ ELEKEF    YL   RR
Sbjct: 11  FDWMKVKRNPPKTA-----KVSEPGLGSPSG-LRTNFTTRQLTELEKEFHFNKYLSRARR 64
Query: 354 KVLSKELGLTERQIKIWFQNRRMKLKR 380
             ++  L L E Q+KIWFQNRRMK K+
Sbjct: 65  VEIAATLELNETQVKIWFQNRRMKQKK 91

>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1 From Homo Sapiens Length = 71

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R R  ++S Q++ELEKEF    YL    R  ++  L L+E Q+KIWFQNRR K KR    
Sbjct: 9   RRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAG 68
Query: 385 MV 386
            V
Sbjct: 69  NV 70

>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Barh-Like 1 Length = 80

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           R R V++  Q++ LEK F    YL +  R  L++ LGL++ Q+K W+QNRRMK K++ P
Sbjct: 19  RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77

>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna Length = 63

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R  +SS Q+  L++EF    YL   RR+ LS ELGL E Q+K WF+N R K+K++
Sbjct: 8   RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKS 62

>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox Protein Nkx-3.1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr6470a Length = 69

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 334 QIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           Q++ELE++F    YL +  R  L+K L LTE Q+KIWFQNRR K KR
Sbjct: 15  QVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61

>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna Length = 60

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R+R  ++  Q+  LEKEF   NY+   RR  L+ +L L E  IK+WFQNRRMK KR
Sbjct: 3   RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58

>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE Length = 58

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           +++ Q++ LE++FR   YL    R   S  L LTE Q+KIWFQNRR K KR
Sbjct: 7   FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57

>pdb|3A03|A Chain A, Crystal Structure Of Hox11l1 Homeodomain Length = 56

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           +S  Q++ELE+ F    YL S  R  L+K L +T+ Q+K WFQNRR K +R
Sbjct: 4   FSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54

>pdb|2L7Z|A Chain A, Nmr Structure Of A13 Homedomain Length = 73

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 324 GRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           GR ++V Y+  Q+ ELE+E+    ++  D+R+ +S    L+ERQ+ IWFQNRR+K K+
Sbjct: 7   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64

>pdb|2LD5|A Chain A, Solution Nmr-Derived Complex Structure Of Hoxa13 Dna Binding Domain Bound To Dna Length = 67

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 324 GRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           GR ++V Y+  Q+ ELE+E+    ++  D+R+ +S    L+ERQ+ IWFQNRR+K K+
Sbjct: 1   GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 58

>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R  ++  Q+ ELEK F    YL S  R  L++ L +T+ Q+K WFQNRR K +R
Sbjct: 21  RTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74

>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R+R  ++S Q+ ELEK F  T+Y     R+ L+ ++GLTE +I++WFQNRR K ++
Sbjct: 1   RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56

>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R+R  ++S Q+ ELEK F  T+Y     R+ L+ ++GLTE +I++WFQNRR K ++
Sbjct: 8   RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 63

>pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif Length = 44

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 340 KEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           +EF    YL   RR+ LS ELGL E QIKIWFQN+R K+K++
Sbjct: 3   REFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS 44

>pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus Norvegicus) Length = 68

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R ++S  Q+ ELE+ F+   YL +  R+ L+  + LT  Q+KIWFQN R K+KR   D
Sbjct: 6   RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63

>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A Dna Oligonucleotide Length = 81

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R R  +S+ Q+ ELE+ F  T Y     R+ L++   LTE +I++WFQNRR +L++ H  
Sbjct: 20  RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79
Query: 385 M 385
           +
Sbjct: 80  V 80

>pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna Length = 58

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           R ++S  Q+ ELE+ F+   YL +  R  L+  L LT  Q+KIWFQNRR K K
Sbjct: 6   RVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58

>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           ++S Q+ ELEK F  T+Y     R+ L+ ++GLTE +I++WFQNRR K ++
Sbjct: 6   FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56

>pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To The Consensus Dna Binding Site Taatcc Length = 68

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           R R  ++S QI ELE+ F    YL + R   LS +L L   Q+KIWF+NRR + K
Sbjct: 4   RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 58

>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L Length = 67

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R  ++ +QI  LE  FR+  Y   D  + L+++L L   +I+IWFQNRR KLKR+H
Sbjct: 5   RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60

>pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective Protein) Length = 80

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R +++  Q  ELE+ FR   YL +  R+ L+  + LT  Q+KIWFQN R K KR
Sbjct: 16  RVLFTKAQTYELERRFRQQRYLSAPEREHLTSLIRLTPTQVKIWFQNHRYKTKR 69

>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES Length = 77

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R +++  Q  ELE+ FR   YL +  R+ L+  + LT  Q+KIWFQN R K KR 
Sbjct: 13  RVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67

>pdb|2KT0|A Chain A, Solution Structure Of Human Stem Cell Transcription Factor Nanog Homeodomain Fragment Length = 84

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R V+SS Q+  L   F+   YL   + + LS  L L+ +Q+K WFQN+RMK KR   +
Sbjct: 26  RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83

>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4, Northeast Structural Genomics Consortium (Nesg) Target Hr4490c Length = 75

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++S+Q+ ELEK F+ T+Y     R+ L+    LTE ++++WFQNRR K ++
Sbjct: 11  RNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66

>pdb|2VI6|A Chain A, Crystal Structure Of The Nanog Homeodomain Length = 62

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R V+S  Q+  L+  F+   YL   + + LS  L L+ +Q+K WFQN+RMK KR
Sbjct: 5   KMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60

>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Goosecoid Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           R R +++  Q+  LE  F+ T Y     R+ L++++ L E ++++WF+NRR K +R+ P
Sbjct: 9   RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67

>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human Paired Box Protein Pax-6 Length = 80

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++  QI  LEKEF  T+Y     R+ L+ ++ L E +I++WF NRR K +R
Sbjct: 9   RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
1b8i_A	81	Ultrabithorax, protein (ultrabithorax homeotic pro	3e-23
2e1o_A	70	Homeobox protein PRH; DNA binding protein, structu	6e-23
1ahd_P	68	Antennapedia protein mutant; DNA binding protein/D	9e-23
2h1k_A	63	IPF-1, pancreatic and duodenal homeobox 1, homeodo	1e-22
2hdd_A	61	Protein (engrailed homeodomain Q50K); DNA binding,	1e-22
1jgg_A	60	Segmentation protein EVEN-skipped; homeodomain, pr	2e-22
2dmt_A	80	Homeobox protein BARH-like 1; homeobox domain, thr	3e-22
2r5y_A	88	Homeotic protein sex combs reduced; homeodomain; H	7e-22
1zq3_P	68	PRD-4, homeotic bicoid protein; protein-DNA comple	8e-22
2djn_A	70	Homeobox protein DLX-5; structural genomics, NPPSF	8e-22
2cra_A	70	Homeobox protein HOX-B13; DNA-binding, transcripti	1e-21
1b72_A	97	Protein (homeobox protein HOX-B1); homeodomain, DN	2e-21
1puf_A	77	HOX-1.7, homeobox protein HOX-A9; homeodomian, pro	3e-21
1ig7_A	58	Homeotic protein MSX-1; helix-turn-helix, transcri	3e-21
1akh_A	61	Protein (mating-type protein A-1); complex (TWO DN	4e-21
2vi6_A	62	Homeobox protein nanog; homeodomain, DNA-binding,	9e-21
2l9r_A	69	Homeobox protein NKX-3.1; structural genomics, nor	1e-20
2l7z_A	73	Homeobox protein HOX-A13; gene regulation; NMR {Ho	2e-20
3a01_A	93	Homeodomain-containing protein; homeodomain, prote	2e-20
2kt0_A	84	Nanog, homeobox protein nanog; homeodomain, struct	3e-20
3a03_A	56	T-cell leukemia homeobox protein 2; homeodomain, d	7e-20
3rkq_A	58	Homeobox protein NKX-2.5; helix-turn-helix, DNA bi	1e-19
1nk2_P	77	Homeobox protein VND; homeodomain, DNA-binding pro	3e-19
1ftt_A	68	TTF-1 HD, thyroid transcription factor 1 homeodoma	6e-19
1e3o_C	160	Octamer-binding transcription factor 1; transcript	1e-16
2da2_A	70	Alpha-fetoprotein enhancer binding protein; homeob	1e-15
2xsd_C	164	POU domain, class 3, transcription factor 1; trans	2e-15
2dn0_A	76	Zinc fingers and homeoboxes protein 3; triple home	4e-15
2da1_A	70	Alpha-fetoprotein enhancer binding protein; homeob	6e-14
3d1n_I	151	POU domain, class 6, transcription factor 1; prote	2e-13
2da3_A	80	Alpha-fetoprotein enhancer binding protein; homeob	2e-13
1wi3_A	71	DNA-binding protein SATB2; homeodomain, helix-turn	4e-13
1au7_A	146	Protein PIT-1, GHF-1; complex (DNA-binding protein	4e-13
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	9e-13
3nau_A	66	Zinc fingers and homeoboxes protein 2; ZHX2, corep	3e-12
3l1p_A	155	POU domain, class 5, transcription factor 1; POU,	6e-12
2k40_A	67	Homeobox expressed in ES cells 1; thermostable hom	2e-11
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	4e-11
1bw5_A	66	ISL-1HD, insulin gene enhancer protein ISL-1; DNA-	6e-11
2da5_A	75	Zinc fingers and homeoboxes protein 3; homeobox do	9e-11
2d5v_A	164	Hepatocyte nuclear factor 6; transcription factor,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2dmp_A	89	Zinc fingers and homeoboxes protein 2; homeobox do	4e-10
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	5e-10
1yz8_P	68	Pituitary homeobox 2; DNA binding protein, transcr	9e-10
2ecb_A	89	Zinc fingers and homeoboxes protein 1; homeobox do	9e-10
2dmu_A	70	Homeobox protein goosecoid; homeobox domain, three	1e-09
3a02_A	60	Homeobox protein aristaless; homeodomain, developm	1e-09
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	2e-09
1uhs_A	72	HOP, homeodomain only protein; structural genomics	4e-09
2cqx_A	72	LAG1 longevity assurance homolog 5; homeodomain, D	5e-09
1fjl_A	81	Paired protein; DNA-binding protein, paired BOX, t	6e-09
1x2m_A	64	LAG1 longevity assurance homolog 6; homeobox domai	7e-07
3nar_A	96	ZHX1, zinc fingers and homeoboxes protein 1; corep	1e-06
2cuf_A	95	FLJ21616 protein; homeobox domain, hepatocyte tran	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-06
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	9e-04

>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81

 Score = 92.6 bits (230), Expect = 3e-23
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R RQ Y+ +Q +ELEKEF   +YL   RR  ++  L LTERQIKIWFQNRRMKLK+  
Sbjct: 22  RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79

>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70

 Score = 91.3 bits (227), Expect = 6e-23
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
             +  +S+ Q +ELEK+F    YL    RK L+K L L+ERQ+K WFQNRR K +R+ P 
Sbjct: 9   GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68

>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68

 Score = 90.9 bits (226), Expect = 9e-23
 Identities = 33/58 (56%), Positives = 40/58 (68%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R RQ Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+ +
Sbjct: 4   RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61

>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63

 Score = 90.5 bits (225), Expect = 1e-22
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R R  Y+  Q++ELEKEF    Y+   RR  L+  L LTER IKIWFQNRRMK K+  
Sbjct: 5   RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62

>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61

 Score = 90.5 bits (225), Expect = 1e-22
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWF+N+R K+K++
Sbjct: 5   RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61

>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60

 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R+R  ++  Q+  LEKEF   NY+   RR  L+ +L L E  IK+WFQNRRMK KR
Sbjct: 3   RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58

>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 89.8 bits (223), Expect = 3e-22
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           R R V++  Q++ LEK F    YL +  R  L++ LGL++ Q+K W+QNRRMK K++ P
Sbjct: 19  RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77

>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88

 Score = 89.1 bits (221), Expect = 7e-22
 Identities = 34/62 (54%), Positives = 40/62 (64%)

Query: 321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
             T R R  Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+
Sbjct: 26  GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85

Query: 381 TH 382
            H
Sbjct: 86  EH 87

>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68

 Score = 88.2 bits (219), Expect = 8e-22
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R R  ++S QI ELE+ F    YL + R   LS +L L   Q+KIWF+NRR + K   
Sbjct: 4   RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61

>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 88.2 bits (219), Expect = 8e-22
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           + R +YSS Q+  L++ F+ T YL    R  L+  LGLT+ Q+KIWFQN+R K+K++ P 
Sbjct: 9   KPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68

>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70

 Score = 88.0 bits (218), Expect = 1e-21
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           + R  YS  Q+ ELE+E+    ++  D+R+ +S    L+ERQI IWFQNRR+K K++ P 
Sbjct: 9   KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68

>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97

 Score = 88.0 bits (218), Expect = 2e-21
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
             R  +++ Q+ ELEKEF    YL   RR  ++  L L E Q+KIWFQNRRMK K+  
Sbjct: 36  GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93

>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77

 Score = 86.8 bits (215), Expect = 3e-21
 Identities = 36/74 (48%), Positives = 48/74 (64%)

Query: 311 SNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIW 370
           +N     L   +T + R  Y+ HQ +ELEKEF    YL  DRR  +++ L LTERQ+KIW
Sbjct: 1   NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60

Query: 371 FQNRRMKLKRTHPD 384
           FQNRRMK+K+ + D
Sbjct: 61  FQNRRMKMKKINKD 74

>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58

 Score = 86.1 bits (214), Expect = 3e-21
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R  +++ Q++ LE++FR   YL    R   S  L LTE Q+KIWFQNRR K KR
Sbjct: 2   KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57

>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61

 Score = 86.1 bits (214), Expect = 4e-21
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           + +   S      LE+ FR    L S  ++ ++K+ G+T  Q+++WF N+RM+ K
Sbjct: 7   KGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61

>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62

 Score = 85.0 bits (211), Expect = 9e-21
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R V+S  Q+  L+  F+   YL   + + LS  L L+ +Q+K WFQN+RMK KR
Sbjct: 5   KMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60

>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
                 S  Q++ELE++F    YL +  R  L+K L LTE Q+KIWFQNRR K KR    
Sbjct: 6   HHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65

>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           + R  Y+  Q+ ELE+E+    ++  D+R+ +S    L+ERQ+ IWFQNRR+K K+  
Sbjct: 9   KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66

>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93

 Score = 84.9 bits (210), Expect = 2e-20
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 315 HKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNR 374
           ++N       + R  ++  Q+ ELEK F    YL S  R  L++ L +T+ Q+K WFQNR
Sbjct: 9   YQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNR 68

Query: 375 RMKLKRTHPD 384
           R K +R   +
Sbjct: 69  RTKWRRQTAE 78

>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84

 Score = 84.5 bits (209), Expect = 3e-20
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 302 PPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG 361
             P+S+   S    ++ +     + R V+SS Q+  L   F+   YL   + + LS  L 
Sbjct: 2   KQPTSAEN-SVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN 60

Query: 362 LTERQIKIWFQNRRMKLKR 380
           L+ +Q+K WFQN+RMK KR
Sbjct: 61  LSYKQVKTWFQNQRMKSKR 79

>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56

 Score = 82.4 bits (204), Expect = 7e-20
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 329 VYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
            +S  Q++ELE+ F    YL S  R  L+K L +T+ Q+K WFQNRR K +R
Sbjct: 3   SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54

>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           + R ++S  Q+ ELE+ F+   YL +  R  L+  L LT  Q+KIWFQNRR K K
Sbjct: 4   KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58

>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R +++  Q  ELE+ FR   YL +  R+ L+  + LT  Q+KIWFQN R K KR
Sbjct: 11  KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66

>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R ++S  Q+ ELE+ F+   YL +  R+ L+  + LT  Q+KIWFQN R K+KR
Sbjct: 4   KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59

>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 20/86 (23%), Positives = 34/86 (39%)

Query: 295 DLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRK 354
           D         S S   +             + R    ++  V LEK F       S+   
Sbjct: 73  DAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDIT 132

Query: 355 VLSKELGLTERQIKIWFQNRRMKLKR 380
           +++++L + +  I++WF NRR K KR
Sbjct: 133 LIAEQLNMEKEVIRVWFSNRRQKEKR 158

>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
             R  ++ +Q+  L+  F    Y   D  + LS  L L  R I +WFQN R K +++ P 
Sbjct: 9   SSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68

>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 20/79 (25%), Positives = 28/79 (35%)

Query: 306 SSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTER 365
           SS      + K   Q    + R          LE  F       +     L+  L L + 
Sbjct: 82  SSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKE 141

Query: 366 QIKIWFQNRRMKLKRTHPD 384
            +++WF NRR K KR  P 
Sbjct: 142 VVRVWFCNRRQKEKRMTPA 160

>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
             ++   S  Q+  L+  F    +      + L+K  GL+ R+++ WF +RR   + 
Sbjct: 9   SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65

>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R R   +  Q+  L + F + N    ++ K ++ + GL ++ IK WF+N   K +++ P 
Sbjct: 9   RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68

>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 17/99 (17%), Positives = 31/99 (31%)

Query: 283 SLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEF 342
           +  S + +   L+         +     +             + R  ++   I  L   F
Sbjct: 53  TPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYF 112

Query: 343 RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
                        ++KEL      +++WF NRR  LK T
Sbjct: 113 EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKNT 151

>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R R   +  Q+  L +++ L +         ++ E+GL +R +++WFQN R + +++ P 
Sbjct: 19  RLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78

>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPS-DRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           R R   S   +  L+         P  +    LS +L L +  I  +FQN+R  +K + P
Sbjct: 9   RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68

Query: 384 D 384
            
Sbjct: 69  S 69

>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146

 Score = 66.2 bits (161), Expect = 4e-13
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R   S      LE+ F   +   S     +++EL L +  +++WF NRR + KR
Sbjct: 89  KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73

 Score = 62.5 bits (152), Expect = 9e-13
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLP-SDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + +     +  Q+  LE  F   N  P      +++ E GLTE Q + WF+ R  + +R
Sbjct: 2   SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60

>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
              +  +  QI  L+  F  + +        L +  GL   +IK WF + R + +R  
Sbjct: 6   HHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63

>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155

 Score = 62.8 bits (152), Expect = 6e-12
 Identities = 20/96 (20%), Positives = 36/96 (37%)

Query: 286 SEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLT 345
           S K++     L +       ++           L     R R    +     LE  F  +
Sbjct: 59  SLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKS 118

Query: 346 NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
                 +   ++ +LGL +  +++WF NRR K KR+
Sbjct: 119 PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154

>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R R  ++ +QI  LE  FR+  Y   D  + L+++L L   +I+IWFQNRR KLKR+H
Sbjct: 3   RPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  +  HQ+  ++  F + +   +   K L+++ GLT+R +++WFQN R K +R
Sbjct: 9   RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64

>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R V +  Q+  L   +       +  ++ L +  GL+ R I++WFQN+R K K+
Sbjct: 5   RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60

>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 57.2 bits (138), Expect = 9e-11
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           +  Q+  LE  F        +    L  E  +T R+I  WF  RR K+     
Sbjct: 15  APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67

>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 14/85 (16%), Positives = 29/85 (34%)

Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
                ++     Q H         + R V++  Q   L   F+       + +  +S++L
Sbjct: 75  SALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL 134

Query: 361 GLTERQIKIWFQNRRMKLKRTHPDM 385
           GL    +  +F N R +      + 
Sbjct: 135 GLELSTVSNFFMNARRRSLDKWLEH 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 84/581 (14%), Positives = 173/581 (29%), Gaps = 192/581 (33%)

Query: 136 HIQYECGKAPQFPCLYCSYR---ARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELS 192
           H+ +E G+  Q+      Y+   +  +     +   K     D  +++  + E+    + 
Sbjct: 6   HMDFETGEH-QY-----QYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEI--DHII 55

Query: 193 PGPKAENRHRF-------------REFLNEHRNLERNVS--HEEIRTHKKHEQP-RKESS 236
               A +                 ++F+ E   L  N       I+T ++  QP      
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQR--QPSMMTRM 111

Query: 237 YKETENTQFNSETNDLSKL----EEPNKTSSILLAHLQQVQKD--------LGLG----A 280
           Y E  +  +N      +K      +P      L   L +++          LG G    A
Sbjct: 112 YIEQRDRLYND-NQVFAKYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 281 SDSLSSEK------------------------DIPSNLDLSQI-PKPPPSSSHTYSNQIH 315
            D   S K                        ++   L L QI P     S H+ + ++ 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLR 226

Query: 316 KNLLQCNTGRFRQVYSSHQ-----IV-------ELEKEF----------R---LTNYLPS 350
            + +Q      R++  S       +V       +    F          R   +T++L +
Sbjct: 227 IHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 351 DRRKVLSKE---LGLTERQIK----IWFQNRRMKLKR----THP---DMVVEYVKESSEA 396
                +S +   + LT  ++K     +   R   L R    T+P    ++ E +++    
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD---G 340

Query: 397 RSASQKTNHQSAPADTSAPNTHMKSF------EEFIREHYERSAVPFPASQPGEHPLATG 450
            +      H     +     T ++S        E+ R+ ++R +V FP S     P    
Sbjct: 341 LATWDNWKHV----NCDKLTTIIESSLNVLEPAEY-RKMFDRLSV-FPPSAH--IPTILL 392

Query: 451 EL---HGSPLEMQTLMEENASKLLLEK--------------------LREQTLEKHLRE- 486
            L        ++  ++ +     L+EK                      E  L + + + 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 487 ---------NHLPVPSVPPL-----------LAGALPPGQVEKLNDLYENERNMLIQELI 526
                    + L     P L           L     P ++     ++ + R       +
Sbjct: 453 YNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------FL 503

Query: 527 RKKLGLLIQNNQNGGHAEDAPTDLSRKLKSDMEEDEAVKEE 567
            +K+          G   +    L +  K  + +++   E 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYER 543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 43/312 (13%), Positives = 94/312 (30%), Gaps = 82/312 (26%)

Query: 12  VSSEDSKTSPQNRKISPSKGVPSLLP--MKD-IRTSDPDWPRPTASFAATIADVATKTL- 67
           +         +    +P     S++   ++D + T D  W         TI + +   L 
Sbjct: 311 LDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLE 367

Query: 68  -PVIQELLSQ----RDGKPVGKATLPSPLKAKL---SDYENKMKNVRESIRQKRLAQGLT 119
               +++  +         +     P+ L + +       + M  V +  +   L +   
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEK-- 419

Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCL-------YCSYRARHKHDLKKHVT----F 168
             Q   S     ++  +++ +  K      L       Y   +     DL         +
Sbjct: 420 --QPKESTISIPSI--YLELKV-KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 169 KHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFRE-FLNEHRNLERNVSHE------- 220
            H  +  H + ++                E    FR  FL+  R LE+ + H+       
Sbjct: 475 SHIGH--HLKNIE--------------HPERMTLFRMVFLD-FRFLEQKIRHDSTAWNAS 517

Query: 221 --------EIRTHKKH---EQPRKESSYKETENTQFNSETN-------DLSKLEEPNKTS 262
                   +++ +K +     P+ E       +     E N       DL ++    +  
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577

Query: 263 SILLAHLQQVQK 274
           +I     +QVQ+
Sbjct: 578 AIFEEAHKQVQR 589

>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89

 Score = 55.8 bits (134), Expect = 4e-10
 Identities = 13/50 (26%), Positives = 20/50 (40%)

Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           +  Q+  LE  F  +++        L  E  L+ R+I  WF  RR     
Sbjct: 21  TQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++  Q+  LE  F  T Y     R+ ++ ++ L E ++++WF+NRR K ++
Sbjct: 9   RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64

>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++S Q+ +LE  F+   Y     R+ ++    LTE ++++WF+NRR K ++
Sbjct: 5   RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60

>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89

 Score = 54.6 bits (131), Expect = 9e-10
 Identities = 14/70 (20%), Positives = 29/70 (41%)

Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYV 390
           ++ Q+  L+  F  ++ L  +    L  +  LT R+I  WF  ++         M ++  
Sbjct: 19  TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDES 78

Query: 391 KESSEARSAS 400
              S +  +S
Sbjct: 79  NAGSSSGPSS 88

>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R R +++  Q+  LE  F+ T Y     R+ L++++ L E ++++WF+NRR K +R+
Sbjct: 9   RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65

>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
              ++S Q+ ELEK F  T+Y     R+ L+ ++GLTE +I++WFQNRR K ++
Sbjct: 3   HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++  QI  LEKEF  T+Y     R+ L+ ++ L E +I++WF NRR K +R
Sbjct: 9   RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 330 YSSHQIVELEKEFRLTNYLPSDR-RKVLSKELGLTERQIKIWFQNRRMKLKR 380
            +  Q+  LE  F   N  P      +++ E GLTE Q + WF+ R  + +R
Sbjct: 8   MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59

>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSD-RRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           +   V        LEK F      P + R K LSK+L  + R+I+ WF++RR + K + P
Sbjct: 10  KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69

>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  +S+ Q+ ELE+ F  T Y     R+ L++   LTE +I++WFQNRR +L++
Sbjct: 20  RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75

>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 338 LEKEFRLTNYLPS-DRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           LEK F      P   R + LSK+L    R I+ WF+ RR + K + P
Sbjct: 15  LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61

>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 17/93 (18%), Positives = 28/93 (30%)

Query: 302 PPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG 361
                S            +  +       +  Q+  L+  F  T +   +    L+KE G
Sbjct: 4   HHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESG 63

Query: 362 LTERQIKIWFQNRRMKLKRTHPDMVVEYVKESS 394
           L    I  WF + R   K  +      Y   +S
Sbjct: 64  LARTDIVSWFGDTRYAWKNGNLKWYYYYQSANS 96

>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 15/73 (20%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------LTERQIKI 369
             R  +    +  +E  F    Y    +R+ ++                   +T  ++  
Sbjct: 9   GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68

Query: 370 WFQNRRMKLKRTH 382
           WF NRR ++KR  
Sbjct: 69  WFANRRKEIKRRA 81

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 118 LTCLQCGRSYCRPYNLKRHIQ---YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA 172
           L C  CG +  +  +L  H +           FPC +C  R      +  H +  H A
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPA 64

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 27/74 (36%)

Query: 322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           ++G   +  +  Q+  L+  F    +   +  + L +  GL   +I  WF + R  LK  
Sbjct: 2   SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61

Query: 382 HPDMVVEYVKESSE 395
                 +     S 
Sbjct: 62  QLKWFRDNASGPSS 75

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHV 166
            C +CG    +P  LK+HI+      P + C YC++  + K +L KH+
Sbjct: 3   ICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
           C +C  S      L+ H +  C   P F C YCS+  +   +L KH
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKH 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.83
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.8
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.79
2kt0_A	84	Nanog, homeobox protein nanog; homeodomain, struct	99.78
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.78
2dmt_A	80	Homeobox protein BARH-like 1; homeobox domain, thr	99.77
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.76
2cra_A	70	Homeobox protein HOX-B13; DNA-binding, transcripti	99.76
2da2_A	70	Alpha-fetoprotein enhancer binding protein; homeob	99.76
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	99.75
2vi6_A	62	Homeobox protein nanog; homeodomain, DNA-binding,	99.75
2da1_A	70	Alpha-fetoprotein enhancer binding protein; homeob	99.75
2da3_A	80	Alpha-fetoprotein enhancer binding protein; homeob	99.75
2dmu_A	70	Homeobox protein goosecoid; homeobox domain, three	99.75
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.75
1wh5_A	80	ZF-HD homeobox family protein; structural genomics	99.75
2djn_A	70	Homeobox protein DLX-5; structural genomics, NPPSF	99.75
2h1k_A	63	IPF-1, pancreatic and duodenal homeobox 1, homeodo	99.75
2hdd_A	61	Protein (engrailed homeodomain Q50K); DNA binding,	99.74
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.74
1ftt_A	68	TTF-1 HD, thyroid transcription factor 1 homeodoma	99.74
1bw5_A	66	ISL-1HD, insulin gene enhancer protein ISL-1; DNA-	99.74
1ahd_P	68	Antennapedia protein mutant; DNA binding protein/D	99.74
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	99.74
1nk2_P	77	Homeobox protein VND; homeodomain, DNA-binding pro	99.74
1wh7_A	80	ZF-HD homeobox family protein; homeobox domain, st	99.73
1yz8_P	68	Pituitary homeobox 2; DNA binding protein, transcr	99.73
2e1o_A	70	Homeobox protein PRH; DNA binding protein, structu	99.73
2l7z_A	73	Homeobox protein HOX-A13; gene regulation; NMR {Ho	99.73
1ig7_A	58	Homeotic protein MSX-1; helix-turn-helix, transcri	99.73
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	99.73
1b8i_A	81	Ultrabithorax, protein (ultrabithorax homeotic pro	99.73
2m0c_A	75	Homeobox protein aristaless-like 4; structural gen	99.73
3a01_A	93	Homeodomain-containing protein; homeodomain, prote	99.73
1zq3_P	68	PRD-4, homeotic bicoid protein; protein-DNA comple	99.73
1puf_A	77	HOX-1.7, homeobox protein HOX-A9; homeodomian, pro	99.73
1jgg_A	60	Segmentation protein EVEN-skipped; homeodomain, pr	99.72
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.72
2k40_A	67	Homeobox expressed in ES cells 1; thermostable hom	99.72
2r5y_A	88	Homeotic protein sex combs reduced; homeodomain; H	99.72
2da4_A	80	Hypothetical protein DKFZP686K21156; homeobox doma	99.72
1fjl_A	81	Paired protein; DNA-binding protein, paired BOX, t	99.71
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.71
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	99.71
3a02_A	60	Homeobox protein aristaless; homeodomain, developm	99.71
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.71
1wi3_A	71	DNA-binding protein SATB2; homeodomain, helix-turn	99.7
3rkq_A	58	Homeobox protein NKX-2.5; helix-turn-helix, DNA bi	99.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
1uhs_A	72	HOP, homeodomain only protein; structural genomics	99.7
2da5_A	75	Zinc fingers and homeoboxes protein 3; homeobox do	99.69
3a03_A	56	T-cell leukemia homeobox protein 2; homeodomain, d	99.69
1akh_A	61	Protein (mating-type protein A-1); complex (TWO DN	99.69
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	99.69
2ly9_A	74	Zinc fingers and homeoboxes protein 1; structural	99.69
2dn0_A	76	Zinc fingers and homeoboxes protein 3; triple home	99.69
1b72_A	97	Protein (homeobox protein HOX-B1); homeodomain, DN	99.68
2ecb_A	89	Zinc fingers and homeoboxes protein 1; homeobox do	99.68
1x2n_A	73	Homeobox protein pknox1; homeobox domain, structur	99.68
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.67
3nar_A	96	ZHX1, zinc fingers and homeoboxes protein 1; corep	99.67
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.67
2cuf_A	95	FLJ21616 protein; homeobox domain, hepatocyte tran	99.67
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.67
1puf_B	73	PRE-B-cell leukemia transcription factor-1; homeod	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.66
1b72_B	87	Protein (PBX1); homeodomain, DNA, complex, DNA-bin	99.66
1du6_A	64	PBX1, homeobox protein PBX1; homeodomain, gene reg	99.65
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.65
2da6_A	102	Hepatocyte nuclear factor 1-beta; homeobox domain,	99.65
2l9r_A	69	Homeobox protein NKX-3.1; structural genomics, nor	99.64
2cqx_A	72	LAG1 longevity assurance homolog 5; homeodomain, D	99.64
2xsd_C	164	POU domain, class 3, transcription factor 1; trans	99.64
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.64
1k61_A	60	Mating-type protein alpha-2; protein-DNA complex,	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
3nau_A	66	Zinc fingers and homeoboxes protein 2; ZHX2, corep	99.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.63
1lfb_A	99	Liver transcription factor (LFB1); transcription r	99.63
1au7_A	146	Protein PIT-1, GHF-1; complex (DNA-binding protein	99.63
1e3o_C	160	Octamer-binding transcription factor 1; transcript	99.63
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.63
2dmp_A	89	Zinc fingers and homeoboxes protein 2; homeobox do	99.63
1le8_B	83	Mating-type protein alpha-2; matalpha2, isothermal	99.62
2dmn_A	83	Homeobox protein TGIF2LX; TGFB-induced factor 2-li	99.62
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.62
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.61
1mnm_C	87	Protein (MAT alpha-2 transcriptional repressor); t	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2e19_A	64	Transcription factor 8; homeobox domain, structura	99.61
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.61
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.61
3d1n_I	151	POU domain, class 6, transcription factor 1; prote	99.61
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.6
1x2m_A	64	LAG1 longevity assurance homolog 6; homeobox domai	99.59
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.58
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.58
3l1p_A	155	POU domain, class 5, transcription factor 1; POU,	99.57
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.56
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.54
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.53
2d5v_A	164	Hepatocyte nuclear factor 6; transcription factor,	99.53
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.51
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.49
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.49
3k2a_A	67	Homeobox protein MEIS2; homeobox domain, DNA-bindi	99.48
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.48
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.46
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.46
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.46
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.44
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.43
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.43
1ic8_A	194	Hepatocyte nuclear factor 1-alpha; transcription r	99.42
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.41
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.41
2da7_A	71	Zinc finger homeobox protein 1B; homeobox domain,	99.41
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.41
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.41
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.4
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.37
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.36
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.34
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.34
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.31
2h8r_A	221	Hepatocyte nuclear factor 1-beta; trasncription fa	99.3
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.3
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.29
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.27
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.26
2lk2_A	89	Homeobox protein TGIF1; NESG, structural genomics,	99.24
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.23
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.23
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.18
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.18
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.17
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.17
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.16
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.13
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.11
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.1
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
1mh3_A	421	Maltose binding-A1 homeodomain protein chimera; MA	99.07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.06
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.03
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.01
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.0
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.0
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.99
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.99
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.99
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.98
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.98
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.97
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.95
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.94
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.92
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.9
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.9
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.89
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.89
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.84
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.81
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.81
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.76
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.74
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.74
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2nzz_A	37	Penetratin conjugated GAS (374-394) peptide; confo	98.73
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.71
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.69
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.67
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.67
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.66
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.65
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.62
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.62
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.6
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.58
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.57
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.55
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.54
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.53
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.53
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.52
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.52
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.52
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.52
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.52
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.52
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.52
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.51
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.49
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.49
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.49
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.49
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.49
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.49
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.48
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.46
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.45
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.41
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.41
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.4
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.38
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.36
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.35
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.33
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.32
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.28
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.26
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.25
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.25
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.22
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.22
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.22
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.19
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.15
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.1
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.09
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.08
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.08
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.07
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.04
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.03
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.03
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.01
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.0
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.98
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.2
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.95
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.18
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.93
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.91
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.91
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.89
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.89
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.87
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.76
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.9
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.71
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.67
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.61
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.59
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.57
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.56
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.56
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.54
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.53
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.52
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.5
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.46
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.56
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.43
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.43
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.55
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.42
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.52
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.24
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.87
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.85
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.37
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.25
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.66
2ys9_A	70	Homeobox and leucine zipper protein homez; homeodo	92.42
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.27
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.92
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.59
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.42
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	86.43
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	81.75

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.83  E-value=2.5e-22  Score=191.15  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=121.4

Q ss_pred             cccccCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhh
Q psy4272          61 DVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      -.|..|...+.....+..|...+.+..+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|..|+++|
T Consensus        22 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  100 (190)
T 2i13_A           22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK-KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH  100 (190)
T ss_dssp             ---------CCSSHHHHHGGGCC---CCEECTTTCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCH-HHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhc
Confidence            45778888887777777777778888899999999999887 68999999999999999999999999999999999999


Q ss_pred             hCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhh
Q psy4272         141 CGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHE  220 (575)
Q Consensus       141 ~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~  220 (575)
                      .++++ |.|.+|++.|.....|..|+++ |.++++|                     .|..|++.|.....|..|+.+|.
T Consensus       101 ~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~---------------------~C~~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A          101 TGEKP-YACPECGKSFSQLAHLRAHQRT-HTGEKPY---------------------KCPECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             HTCCC-EECTTTCCEESSHHHHHHHHHH-HHCCCCE---------------------ECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CCCCC-CcCCCCCCccCCHHHHHHHHHH-hCCCCCe---------------------ECCCCCcccCCHHHHHHHHHhcC
Confidence            99999 9999999999999999999998 6677777                     88888888888888888888888


Q ss_pred             hhhccccCCCCCCCCC
Q psy4272         221 EIRTHKKHEQPRKESS  236 (575)
Q Consensus       221 ~~~~~~~~~~~~~~ss  236 (575)
                      +.+++.+..+...+..
T Consensus       158 ~~~~~~C~~C~~~f~~  173 (190)
T 2i13_A          158 GEKPYKCPECGKSFSR  173 (190)
T ss_dssp             CCCCEECTTTCCEESS
T ss_pred             CCCCeECCCCCCccCC
Confidence            8888888777555443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.83  E-value=8.6e-22  Score=187.46  Aligned_cols=139  Identities=14%  Similarity=0.226  Sum_probs=91.1

Q ss_pred             ccccCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhh
Q psy4272          62 VATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      .|..|...+.....+..|...+.+..+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|..|+++|+
T Consensus        51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  129 (190)
T 2i13_A           51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR-ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT  129 (190)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH-HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHH
T ss_pred             cCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCH-HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhC
Confidence            4566666665555555555555566667777777777665 566777777777777777777777777777777777777


Q ss_pred             CCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhh
Q psy4272         142 GKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEE  221 (575)
Q Consensus       142 gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~  221 (575)
                      ++++ |.|.+|++.|.....|..|+++ |.++++|                     .|..|++.|.....|..|+++|.+
T Consensus       130 ~~~~-~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~---------------------~C~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          130 GEKP-YKCPECGKSFSREDNLHTHQRT-HTGEKPY---------------------KCPECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             CCCC-EECTTTCCEESCHHHHHHHHHH-HHCCCCE---------------------ECTTTCCEESSHHHHHHHHTTC--
T ss_pred             CCCC-eECCCCCcccCCHHHHHHHHHh-cCCCCCe---------------------ECCCCCCccCCHHHHHHHHHhcCC
Confidence            7777 7777777777777777777766 5555666                     677777777777777777766665


Q ss_pred             hhc
Q psy4272         222 IRT  224 (575)
Q Consensus       222 ~~~  224 (575)
                      .++
T Consensus       187 ~k~  189 (190)
T 2i13_A          187 KKT  189 (190)
T ss_dssp             ---
T ss_pred             CCC
Confidence            543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=2.2e-21  Score=174.66  Aligned_cols=113  Identities=10%  Similarity=0.067  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccC
Q psy4272          79 GKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARH  158 (575)
Q Consensus        79 ~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~  158 (575)
                      +..++.+.++|.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|..|+++|+|+++ |.|.+||+.|..
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~   90 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCL-TSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFIN   90 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCH-HHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC-EEESSSCCEESS
T ss_pred             ceeecCCCcCeECCCCCCCcCCH-HHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc-ccCCCCCCCcCC
Confidence            34566788999999999999988 7999999999999999999999999999999999999999999 999999999999


Q ss_pred             hhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccCh
Q psy4272         159 KHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNE  209 (575)
Q Consensus       159 ~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~  209 (575)
                      ...|..|+++||.+ .++.               ....++|..|++.|...
T Consensus        91 ~~~L~~H~~~hh~~-~p~~---------------~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQ-DPSG---------------DSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHHTCC-CTTS---------------SSCCEEECCCCSSCCCC
T ss_pred             HHHHHHHhHHhcCC-CCCC---------------CCCCeecCCCCchhhhc
Confidence            99999999996654 3220               01124899999888654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.80  E-value=3.8e-20  Score=161.83  Aligned_cols=112  Identities=20%  Similarity=0.300  Sum_probs=105.1

Q ss_pred             CCCCCCCCCC--CcchhhcchhHHHHHhhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccccccccCh
Q psy4272          84 KATLPSPLKA--KLSDYENKMKNVRESIRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHK  159 (575)
Q Consensus        84 ~~~~p~~C~~--C~~~f~~~~~~L~~H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~  159 (575)
                      ++.++|.|.+  |++.|... ..|..|+++|.++++|.|.  .|++.|.....|..|+++|+++++ |.|.+|++.|...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~   79 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKL-SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRS   79 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCH-HHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCH
T ss_pred             CCCeeeeCCCCCCcchhCCH-HHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccCchhCCH
Confidence            3567999997  99999988 7999999999999999999  799999999999999999999999 9999999999999


Q ss_pred             hhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcc--hhhhhhccChhhhHhhhhhh
Q psy4272         160 HDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAEN--RHRFREFLNEHRNLERNVSH  219 (575)
Q Consensus       160 ~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C--~~C~k~F~~~~~l~~H~~th  219 (575)
                      ..|..|+++ |.++++|                     .|  ..|++.|.....|..|+++|
T Consensus        80 ~~l~~H~~~-h~~~~~~---------------------~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           80 DHLKTHTRT-HTGEKPF---------------------SCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHH-HHTCCCE---------------------ECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHH-hcCCCCe---------------------eCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999 7777778                     89  89999999999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=9.7e-20  Score=160.27  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=105.3

Q ss_pred             CCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhh---hhCCCCCcccccccccccChh
Q psy4272          84 KATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQY---ECGKAPQFPCLYCSYRARHKH  160 (575)
Q Consensus        84 ~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~---H~gekp~~~C~~Cgk~F~~~~  160 (575)
                      ++..+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|++.   |.++++ |.|.+|++.|....
T Consensus         3 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~-~~C~~C~~~f~~~~   80 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSK-YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRM   80 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSH-HHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC-EECSSSCCEESSHH
T ss_pred             CCCCCCCCCCCCCcCCCH-HHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC-eECCCCCCccCCHH
Confidence            457789999999999988 7999999999999999999999999999999999985   678899 99999999999999


Q ss_pred             hHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhh-hhhh
Q psy4272         161 DLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNV-SHEE  221 (575)
Q Consensus       161 ~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~-th~~  221 (575)
                      .|..|+++ |.++++|                     .|..|++.|.....|..|++ .|.+
T Consensus        81 ~l~~H~~~-h~~~~~~---------------------~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           81 ELRLHMVS-HTGEMPY---------------------KCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHH-HSSSCSE---------------------ECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHHH-cCCCCCc---------------------cCCCccchhCCHHHHHHHHHHHCCC
Confidence            99999999 7788888                     99999999999999999986 4544

>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}

Probab=99.78  E-value=2.3e-19  Score=148.19  Aligned_cols=67  Identities=36%  Similarity=0.564  Sum_probs=62.6

Q ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         318 LLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       318 ~~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ....+.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||.++.
T Consensus        17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~   83 (84)
T 2kt0_A           17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN   83 (84)
T ss_dssp             CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            3456788999999999999999999999999999999999999999999999999999999997753

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.78  E-value=1.6e-19  Score=159.30  Aligned_cols=114  Identities=18%  Similarity=0.362  Sum_probs=101.8

Q ss_pred             CCCCCCC--CCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc--ccccccChhh
Q psy4272          86 TLPSPLK--AKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRARHKHD  161 (575)
Q Consensus        86 ~~p~~C~--~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~  161 (575)
                      +++|.|.  .|++.|... ..|..|+++| ++++|.|.+|++.|.....|..|+++|+++++ |.|.+  |++.|.....
T Consensus         3 ~~~~~C~~~~C~~~f~~~-~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDN-SAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             --CEECCSTTCCCEESSH-HHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCCCEESCHHH
T ss_pred             CCcccCCCCCCcCccCCH-HHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCcCccCCHHH
Confidence            4679999  899999988 7999999999 89999999999999999999999999999999 99986  9999999999


Q ss_pred             HHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcc--hhhhhhccChhhhHhhhhhhhhhhc
Q psy4272         162 LKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAEN--RHRFREFLNEHRNLERNVSHEEIRT  224 (575)
Q Consensus       162 L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C--~~C~k~F~~~~~l~~H~~th~~~~~  224 (575)
                      |..|+++ |.++++|                     .|  +.|++.|.....|..|+++|.+.+.
T Consensus        80 l~~H~~~-h~~~~~~---------------------~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           80 LRTHVRI-HTGDRPY---------------------VCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             HHHHHHH-HHCCCCC---------------------CCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             HHHHHHH-hCCCCce---------------------ECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            9999999 7777777                     99  4699999999999999999987654

>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=4.2e-19  Score=145.14  Aligned_cols=64  Identities=41%  Similarity=0.691  Sum_probs=61.0

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .++.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus        14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~   77 (80)
T 2dmt_A           14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP   77 (80)
T ss_dssp             CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence            4678899999999999999999999999999999999999999999999999999999999765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=4.7e-19  Score=162.67  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=110.6

Q ss_pred             CCCCCCCCCCCcchhhcchhHHHHHhhh-cCCCCc--------ccccccCccccChhhHHHHhhhhhCCCCCccccc--c
Q psy4272          84 KATLPSPLKAKLSDYENKMKNVRESIRQ-KRLAQG--------LTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY--C  152 (575)
Q Consensus        84 ~~~~p~~C~~C~~~f~~~~~~L~~H~r~-H~~~kp--------~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~--C  152 (575)
                      ....+|.|.+|++.|... ..|..|++. |.+.++        |.|.+|++.|.....|..|+++|+++++ |.|.+  |
T Consensus        21 ~~~~~~~C~~C~~~f~~~-~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C   98 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTM-HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGC   98 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSH-HHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTT
T ss_pred             hhhcccccccCCcccCCH-HHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCC
Confidence            346789999999999988 799999997 887765        8999999999999999999999999999 99998  9


Q ss_pred             cccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchh--hhhhccChhhhHhhhhhhhhhhccccC
Q psy4272         153 SYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRH--RFREFLNEHRNLERNVSHEEIRTHKKH  228 (575)
Q Consensus       153 gk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~--C~k~F~~~~~l~~H~~th~~~~~~~~~  228 (575)
                      ++.|.....|..|+++ |.++++|                     .|..  |++.|.....|..|+++|.+.+++.+.
T Consensus        99 ~~~f~~~~~L~~H~~~-h~~~~~~---------------------~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           99 GKIFARSENLKIHKRT-HTGEKPF---------------------KCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCEESCHHHHHHHHTT-TCSSCSB---------------------CCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCccCCHHHHHHHHHh-hCCCCCc---------------------cCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999998 7788888                     9996  999999999999999999988877653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.3e-19  Score=166.26  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             ccccCchHHHhhhccCCCCC---CCCCCCCCCCCCC-----cchhhcchhHHHHHhhhcCCCCcccccc--cCccccChh
Q psy4272          62 VATKTLPVIQELLSQRDGKP---VGKATLPSPLKAK-----LSDYENKMKNVRESIRQKRLAQGLTCLQ--CGRSYCRPY  131 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~C~~C-----~~~f~~~~~~L~~H~r~H~~~kp~~C~~--Cgk~F~~~~  131 (575)
                      .|..|.+.+.....+..|..   .+....+|.|.+|     ++.|... ..|..|+++|.++++|.|.+  |++.|....
T Consensus         5 ~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   83 (155)
T 2gli_A            5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQ-YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE   83 (155)
T ss_dssp             CBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSH-HHHHHHTHHHHCCCCCCCCSTTCCCCCSSHH
T ss_pred             CcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhH-HHHHHHHHhcCCCCCccCCCCCCCCcccCHH
Confidence            35566666655555555544   5667788888754     4888887 79999999999999999986  999999999


Q ss_pred             hHHHHhhhhhCCCCCccccc--ccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchh--hhhhcc
Q psy4272         132 NLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRH--RFREFL  207 (575)
Q Consensus       132 ~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~--C~k~F~  207 (575)
                      .|..|+++|+++++ |.|.+  |++.|.....|..|++..|.++++|                     .|..  |++.|.
T Consensus        84 ~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~---------------------~C~~~~C~~~f~  141 (155)
T 2gli_A           84 NLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY---------------------VCKLPGCTKRYT  141 (155)
T ss_dssp             HHHHHHHHTTTCCC-EECCSTTCCCEESSSSTTHHHHHHTTCSCCCE---------------------ECCSTTTCCEES
T ss_pred             HHHHHHHHcCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe---------------------eCCCCCCccccC
Confidence            99999999999999 99998  9999999999999994448888888                     9988  999999


Q ss_pred             ChhhhHhhhhhhh
Q psy4272         208 NEHRNLERNVSHE  220 (575)
Q Consensus       208 ~~~~l~~H~~th~  220 (575)
                      ....|..|+++|.
T Consensus       142 ~~~~L~~H~~~hh  154 (155)
T 2gli_A          142 DPSSLRKHVKTVH  154 (155)
T ss_dssp             SHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998874

>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.76  E-value=5.8e-19  Score=140.52  Aligned_cols=64  Identities=41%  Similarity=0.702  Sum_probs=60.6

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||...
T Consensus         4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~   67 (70)
T 2cra_A            4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP   67 (70)
T ss_dssp             SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence            3567899999999999999999999999999999999999999999999999999999999764

>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}

Probab=99.76  E-value=7.5e-19  Score=139.92  Aligned_cols=65  Identities=29%  Similarity=0.446  Sum_probs=61.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..+.||.||.||..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||..+.
T Consensus         4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~   68 (70)
T 2da2_A            4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS   68 (70)
T ss_dssp             SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence            45678999999999999999999999999999999999999999999999999999999997654

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=8.8e-19  Score=143.25  Aligned_cols=67  Identities=25%  Similarity=0.421  Sum_probs=62.6

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ..+.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+...
T Consensus         4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~   70 (80)
T 2dms_A            4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ   70 (80)
T ss_dssp             CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence            3577899999999999999999999999999999999999999999999999999999999876543

>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}

Probab=99.75  E-value=5.5e-19  Score=137.19  Aligned_cols=61  Identities=38%  Similarity=0.630  Sum_probs=53.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      +.+|.||.||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||.+
T Consensus         2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q   62 (62)
T 2vi6_A            2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ   62 (62)
T ss_dssp             ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence            4688999999999999999999999999999999999999999999999999999999864

>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=8.2e-19  Score=139.69  Aligned_cols=65  Identities=25%  Similarity=0.421  Sum_probs=61.4

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..+.||.||.||..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||..+.
T Consensus         4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~   68 (70)
T 2da1_A            4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS   68 (70)
T ss_dssp             SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence            45778999999999999999999999999999999999999999999999999999999997653

>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=7.4e-19  Score=143.81  Aligned_cols=64  Identities=23%  Similarity=0.474  Sum_probs=60.9

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+|+..|..++||+..++++||..|||++++|+|||||||+|+||.+.
T Consensus        14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~   77 (80)
T 2da3_A           14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP   77 (80)
T ss_dssp             CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence            4678899999999999999999999999999999999999999999999999999999999764

>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1e-18  Score=139.06  Aligned_cols=63  Identities=32%  Similarity=0.656  Sum_probs=60.1

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.||.||.||..|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||...
T Consensus         5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~   67 (70)
T 2dmu_A            5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP   67 (70)
T ss_dssp             TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence            467899999999999999999999999999999999999999999999999999999999764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.75  E-value=1.3e-19  Score=163.10  Aligned_cols=98  Identities=18%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             HHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhh
Q psy4272         104 NVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEE  183 (575)
Q Consensus       104 ~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~  183 (575)
                      ++..|.++|.|+++|.|.+||+.|.....|.+|+++|+++++ |.|.+||+.|.....|..|+++ |.+++++       
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~-------   79 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIH-HTGERRY-------   79 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHH-HHTCCCE-------
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccc-cCCCccc-------
Confidence            556778899999999999999999999999999999999999 9999999999999999999998 8889988       


Q ss_pred             hhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhhhc
Q psy4272         184 LEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRT  224 (575)
Q Consensus       184 ~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~  224 (575)
                                    .|..|++.|.....|..|+++|.+.++
T Consensus        80 --------------~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           80 --------------QCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             --------------EESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             --------------cCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence                          999999999999999999999865543

>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1

Probab=99.75  E-value=8.6e-19  Score=142.89  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRL----TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~----~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      .++||.||.||..|+.+|+..|+.    ++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus        15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~   78 (80)
T 1wh5_A           15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS   78 (80)
T ss_dssp             CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence            567899999999999999999999    999999999999999999999999999999999986

>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=138.95  Aligned_cols=64  Identities=42%  Similarity=0.743  Sum_probs=60.5

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+||..|..++||+..++++||..+||++++|+|||||||+|+||...
T Consensus         4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~   67 (70)
T 2djn_A            4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP   67 (70)
T ss_dssp             CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence            4567899999999999999999999999999999999999999999999999999999999654

>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}

Probab=99.75  E-value=1e-18  Score=136.14  Aligned_cols=61  Identities=51%  Similarity=0.810  Sum_probs=56.5

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ..||.||.||..|+.+|+..|..++||+..++.+||..+||++++|+|||||||+|+||..
T Consensus         2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~   62 (63)
T 2h1k_A            2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE   62 (63)
T ss_dssp             ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence            4678999999999999999999999999999999999999999999999999999999864

>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A

Probab=99.74  E-value=1.3e-18  Score=134.65  Aligned_cols=59  Identities=49%  Similarity=0.820  Sum_probs=53.5

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      ..||.||.||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||
T Consensus         2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk   60 (61)
T 2hdd_A            2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK   60 (61)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence            35889999999999999999999999999999999999999999999999999999997

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.74  E-value=4.8e-19  Score=168.38  Aligned_cols=134  Identities=15%  Similarity=0.192  Sum_probs=94.4

Q ss_pred             ccCchHHHhhhccCCCCCCCCCCCCCCC--CCCcchhhcchhHHHHHhhhcCCCCccccc--ccCccccChhhHHHHh-h
Q psy4272          64 TKTLPVIQELLSQRDGKPVGKATLPSPL--KAKLSDYENKMKNVRESIRQKRLAQGLTCL--QCGRSYCRPYNLKRHI-Q  138 (575)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~p~~C--~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~-r  138 (575)
                      ..|.+.+.....+..|...+.+..+|.|  .+|++.|... ..|..|+++|.++++|.|.  .|++.|.....|.+|+ +
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   96 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSL-HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR   96 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSH-HHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHT
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCH-HHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHH
Confidence            3555555555555555555666677777  6777777766 5777777777777777777  6777777777777777 5


Q ss_pred             hh-hCCCCCccc--ccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchh--hhhhccChhhhH
Q psy4272         139 YE-CGKAPQFPC--LYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRH--RFREFLNEHRNL  213 (575)
Q Consensus       139 ~H-~gekp~~~C--~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~--C~k~F~~~~~l~  213 (575)
                      .| .++++ |.|  ..|++.|.....|..|+++ |.++++|                     .|..  |++.|.....|.
T Consensus        97 ~h~~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~---------------------~C~~~~C~k~F~~~~~L~  153 (190)
T 1tf6_A           97 FHNIKICV-YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPY---------------------ECPHEGCDKRFSLPSRLK  153 (190)
T ss_dssp             TSSTTTSC-CEECSSSSCEECSSHHHHHHHHGG-GSSSCSS---------------------BCCSSSCCCBCSSHHHHH
T ss_pred             hcCCCcce-eeCCCCCCccccCCHHHHHHHHHH-hCCCCCc---------------------cCCCCCCCchhcCHHHHH
Confidence            56 45666 777  6777777777777777777 6666666                     7766  777777777777


Q ss_pred             hhhhhhhh
Q psy4272         214 ERNVSHEE  221 (575)
Q Consensus       214 ~H~~th~~  221 (575)
                      .|+++|.+
T Consensus       154 ~H~~~H~~  161 (190)
T 1tf6_A          154 RHEKVHAG  161 (190)
T ss_dssp             HHHTSSCS
T ss_pred             HHHHHhCC
Confidence            77777655

>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1

Probab=99.74  E-value=1.8e-18  Score=136.87  Aligned_cols=64  Identities=39%  Similarity=0.661  Sum_probs=60.5

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      +||.||.||..|+.+||..|..++||+..++.+||..+||++++|+|||||||+|+||..+...
T Consensus         2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~   65 (68)
T 1ftt_A            2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA   65 (68)
T ss_dssp             CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence            5788999999999999999999999999999999999999999999999999999999876543

>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1

Probab=99.74  E-value=1.7e-18  Score=136.18  Aligned_cols=63  Identities=29%  Similarity=0.405  Sum_probs=59.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      +.||.||.||..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||....
T Consensus         2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~   64 (66)
T 1bw5_A            2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM   64 (66)
T ss_dssp             CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhh
Confidence            578999999999999999999999999999999999999999999999999999999997643

>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A

Probab=99.74  E-value=1.6e-18  Score=137.16  Aligned_cols=63  Identities=52%  Similarity=0.783  Sum_probs=59.7

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      +||.||.||..|+.+||..|..++||+..++++||..+||++++|+|||||||+|+||..+..
T Consensus         2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~   64 (68)
T 1ahd_P            2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK   64 (68)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence            578899999999999999999999999999999999999999999999999999999977543

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.74  E-value=1.4e-18  Score=141.99  Aligned_cols=65  Identities=35%  Similarity=0.544  Sum_probs=61.0

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .+.||.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..+..
T Consensus         5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~   69 (80)
T 2cue_A            5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR   69 (80)
T ss_dssp             CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence            56789999999999999999999999999999999999999999999999999999999976543

>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A

Probab=99.74  E-value=2.5e-18  Score=139.49  Aligned_cols=65  Identities=38%  Similarity=0.623  Sum_probs=60.9

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.+.||.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||...
T Consensus         5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~   69 (77)
T 1nk2_P            5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN   69 (77)
T ss_dssp             CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence            34677889999999999999999999999999999999999999999999999999999998654

>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1

Probab=99.73  E-value=1.6e-18  Score=141.10  Aligned_cols=60  Identities=20%  Similarity=0.304  Sum_probs=57.0

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRL-----TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~-----~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      ..++||.||.||..|+.+|+ .|..     ++||+..+|++||..|||++++|||||||||+|+|+
T Consensus        14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~   78 (80)
T 1wh7_A           14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS   78 (80)
T ss_dssp             CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred             CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence            35678999999999999999 7999     999999999999999999999999999999999986

>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P

Probab=99.73  E-value=1.2e-18  Score=137.93  Aligned_cols=64  Identities=28%  Similarity=0.522  Sum_probs=60.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ++||.||.||..|+.+|+..|..++||+..++.+||..+||++.+|+|||||||+|+||..+..
T Consensus         2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~   65 (68)
T 1yz8_P            2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI   65 (68)
T ss_dssp             CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence            5688999999999999999999999999999999999999999999999999999999987654

>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.73  E-value=3.1e-18  Score=136.33  Aligned_cols=63  Identities=44%  Similarity=0.691  Sum_probs=59.8

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.+|.|+.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+...
T Consensus         5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~   67 (70)
T 2e1o_A            5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP   67 (70)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence            456788999999999999999999999999999999999999999999999999999999764

>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*

Probab=99.73  E-value=3e-18  Score=137.52  Aligned_cols=65  Identities=35%  Similarity=0.640  Sum_probs=61.1

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .+.||.||.||..|+.+||..|..++||+..++++||..+||++++|+|||||||+|+||.....
T Consensus         5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~   69 (73)
T 2l7z_A            5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL   69 (73)
T ss_dssp             SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence            46789999999999999999999999999999999999999999999999999999999976543

>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1

Probab=99.73  E-value=2.6e-18  Score=131.59  Aligned_cols=58  Identities=45%  Similarity=0.733  Sum_probs=56.1

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ||.||.||..|+.+|+..|..++||+..++++||..+||++++|+|||||||+|+||.
T Consensus         1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~   58 (58)
T 1ig7_A            1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL   58 (58)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence            5789999999999999999999999999999999999999999999999999999973

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.3e-18  Score=140.83  Aligned_cols=64  Identities=28%  Similarity=0.537  Sum_probs=60.4

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .+.||.||.||..|+.+|+..|..++||+..++++||..|||++++|+|||||||+|+||....
T Consensus         5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~   68 (80)
T 2dmq_A            5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR   68 (80)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999996543

>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*

Probab=99.73  E-value=2.4e-18  Score=140.85  Aligned_cols=63  Identities=54%  Similarity=0.761  Sum_probs=55.0

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus        18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~   80 (81)
T 1b8i_A           18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ   80 (81)
T ss_dssp             ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence            457889999999999999999999999999999999999999999999999999999999754

>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.73  E-value=3.5e-18  Score=138.01  Aligned_cols=67  Identities=34%  Similarity=0.493  Sum_probs=62.4

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      .++++|.||.||..|+.+|+..|..++||+..++++||..|||++.+|+|||||||+|+||..+...
T Consensus         6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q   72 (75)
T 2m0c_A            6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ   72 (75)
T ss_dssp             CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence            3567889999999999999999999999999999999999999999999999999999999876543

>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}

Probab=99.73  E-value=3.1e-18  Score=143.93  Aligned_cols=67  Identities=36%  Similarity=0.596  Sum_probs=62.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      +.+.||.||.||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+||||......
T Consensus        14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~   80 (93)
T 3a01_A           14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER   80 (93)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence            4577899999999999999999999999999999999999999999999999999999999876544

>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1

Probab=99.73  E-value=2.1e-18  Score=136.48  Aligned_cols=62  Identities=40%  Similarity=0.598  Sum_probs=59.0

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .||.||.||..|+.+|+..|..++||+..++++||..|||++++|+|||||||+|+|+....
T Consensus         2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~   63 (68)
T 1zq3_P            2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ   63 (68)
T ss_dssp             CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999999999999999999997643

>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A

Probab=99.73  E-value=2.9e-18  Score=139.10  Aligned_cols=64  Identities=52%  Similarity=0.794  Sum_probs=60.4

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .++.+|.||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..+
T Consensus        10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k   73 (77)
T 1puf_A           10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK   73 (77)
T ss_dssp             CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence            3567889999999999999999999999999999999999999999999999999999999754

>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1

Probab=99.72  E-value=3.4e-18  Score=131.80  Aligned_cols=58  Identities=48%  Similarity=0.776  Sum_probs=55.8

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ||.||.||..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||+
T Consensus         2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~   59 (60)
T 1jgg_A            2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ   59 (60)
T ss_dssp             -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence            6889999999999999999999999999999999999999999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.72  E-value=5.7e-18  Score=160.90  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             CCCCCCCCC--CCCcchhhcchhHHHHHhhhcCCCCcccc--cccCccccChhhHHHHhhhhhCCCCCcccc--cccccc
Q psy4272          83 GKATLPSPL--KAKLSDYENKMKNVRESIRQKRLAQGLTC--LQCGRSYCRPYNLKRHIQYECGKAPQFPCL--YCSYRA  156 (575)
Q Consensus        83 ~~~~~p~~C--~~C~~~f~~~~~~L~~H~r~H~~~kp~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~--~Cgk~F  156 (575)
                      .....+|.|  ..|++.|... ..|..|+++|.++++|.|  .+|++.|.....|.+|+++|.++++ |.|.  .|++.|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f   84 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKN-WKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRF   84 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSH-HHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC-EECCSSSCCCEE
T ss_pred             cCCCcceeCCCCCCcchhCCH-HHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCc-eeCCCCCCCCcc
Confidence            345778999  6899999988 799999999999999999  8899999999999999999999999 9999  899999


Q ss_pred             cChhhHHHHHHhhc-cCcccchhhhhhhhhcccccCCCCCCCcc--hhhhhhccChhhhHhhhhhhhhhhccccCC--CC
Q psy4272         157 RHKHDLKKHVTFKH-AAYLDHFQAVQEELEVTTKELSPGPKAEN--RHRFREFLNEHRNLERNVSHEEIRTHKKHE--QP  231 (575)
Q Consensus       157 ~~~~~L~~H~r~~H-~~~~~~~~~~~~~~~~~t~e~sp~p~~~C--~~C~k~F~~~~~l~~H~~th~~~~~~~~~~--~~  231 (575)
                      .....|..|++.+| .+..+|                     .|  ..|++.|.....|..|+.+|.+.+++.+..  +.
T Consensus        85 ~~~~~l~~H~~~~h~~~~~~~---------------------~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~  143 (190)
T 1tf6_A           85 TTKANMKKHFNRFHNIKICVY---------------------VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD  143 (190)
T ss_dssp             SCHHHHHHHHHTTSSTTTSCC---------------------EECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCC
T ss_pred             CCHHHHHHHHHHhcCCCccee---------------------eCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCC
Confidence            99999999996556 466666                     99  999999999999999999999998888865  65


Q ss_pred             CCCCC
Q psy4272         232 RKESS  236 (575)
Q Consensus       232 ~~~ss  236 (575)
                      ..+..
T Consensus       144 k~F~~  148 (190)
T 1tf6_A          144 KRFSL  148 (190)
T ss_dssp             CBCSS
T ss_pred             chhcC
Confidence            55444

>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}

Probab=99.72  E-value=4.6e-18  Score=134.09  Aligned_cols=63  Identities=41%  Similarity=0.620  Sum_probs=59.7

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .||.||.||..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||..+..
T Consensus         1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~   63 (67)
T 2k40_A            1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES   63 (67)
T ss_dssp             CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred             CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence            378899999999999999999999999999999999999999999999999999999977653

>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*

Probab=99.72  E-value=4.1e-18  Score=141.86  Aligned_cols=64  Identities=53%  Similarity=0.810  Sum_probs=56.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus        25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k   88 (88)
T 2r5y_A           25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK   88 (88)
T ss_dssp             ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhcC
Confidence            3467889999999999999999999999999999999999999999999999999999999653

>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=2.9e-18  Score=140.17  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhC----CCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLT----NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~----~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+||..|..+    +||+..+|++||..|||++++|+|||||||+|+||...
T Consensus         5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~   72 (80)
T 2da4_A            5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI   72 (80)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence            35678999999999999999999999    99999999999999999999999999999999999543

>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B

Probab=99.71  E-value=5.7e-18  Score=138.77  Aligned_cols=63  Identities=38%  Similarity=0.651  Sum_probs=59.1

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      .++.||.||.||..|+.+|+..|..++||+..++.+||..+||++.+|+|||||||+|+||+.
T Consensus        15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~   77 (81)
T 1fjl_A           15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH   77 (81)
T ss_dssp             --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence            467889999999999999999999999999999999999999999999999999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.71  E-value=1.9e-17  Score=141.92  Aligned_cols=92  Identities=20%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             CCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhh
Q psy4272          82 VGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHD  161 (575)
Q Consensus        82 ~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~  161 (575)
                      ......+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~   88 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKS-YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRT   88 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSH-HHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCSSHHH
T ss_pred             CcCCCcCeECCCCCCccCCH-HHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCcccCHHH
Confidence            34557789999999999988 7999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhccCcccc
Q psy4272         162 LKKHVTFKHAAYLDH  176 (575)
Q Consensus       162 L~~H~r~~H~~~~~~  176 (575)
                      |..|+++ |.+++++
T Consensus        89 L~~H~~~-H~~~~~~  102 (106)
T 2ee8_A           89 LAVHKTL-HMQTSSP  102 (106)
T ss_dssp             HHHHHHH-TTSCCCC
T ss_pred             HHHHHHH-hCCCCCC
Confidence            9999999 6777665

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.71  E-value=7.3e-18  Score=134.46  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       325 r~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      +.|+.||.+|+.+|++.|..++||+..+|++||..+||++++|+|||||||+|+|+.+..-.
T Consensus         5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~   66 (76)
T 2ecc_A            5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWF   66 (76)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSST
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHH
Confidence            34677999999999999999999999999999999999999999999999999999765433

>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A

Probab=99.71  E-value=6.3e-18  Score=130.30  Aligned_cols=58  Identities=40%  Similarity=0.649  Sum_probs=50.8

Q ss_pred             CcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       326 ~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .||.||..|+.+|+..|..++||+..++++||..+||++++|+|||||||+|+||..+
T Consensus         2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k   59 (60)
T 3a02_A            2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK   59 (60)
T ss_dssp             ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred             CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence            5899999999999999999999999999999999999999999999999999998653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.5e-17  Score=152.42  Aligned_cols=119  Identities=15%  Similarity=0.245  Sum_probs=108.9

Q ss_pred             CCCCCCCCcchhhcchhHHHHHhh---hcCCCCccccccc-----CccccChhhHHHHhhhhhCCCCCccccc--ccccc
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESIR---QKRLAQGLTCLQC-----GRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRA  156 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~r---~H~~~kp~~C~~C-----gk~F~~~~~L~~H~r~H~gekp~~~C~~--Cgk~F  156 (575)
                      .+|.|.+|++.|... ..|..|++   +|.++++|.|.+|     ++.|.....|.+|+++|+++++ |.|.+  |++.|
T Consensus         2 ~~~~C~~C~~~f~~~-~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f   79 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQ-EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSY   79 (155)
T ss_dssp             CBCCBTTCCCBCSCH-HHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC-CCCCSTTCCCCC
T ss_pred             CcCCcCCCccccCCH-HHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC-ccCCCCCCCCcc
Confidence            578999999999988 79999998   7899999998753     4999999999999999999999 99985  99999


Q ss_pred             cChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchh--hhhhccChhhhHhhh-hhhhhhhccccCC
Q psy4272         157 RHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRH--RFREFLNEHRNLERN-VSHEEIRTHKKHE  229 (575)
Q Consensus       157 ~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~--C~k~F~~~~~l~~H~-~th~~~~~~~~~~  229 (575)
                      .....|..|+++ |.++++|                     .|..  |++.|.....|..|+ .+|.+.+++.+..
T Consensus        80 ~~~~~l~~H~~~-h~~~~~~---------------------~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           80 SRLENLKTHLRS-HTGEKPY---------------------MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             SSHHHHHHHHHH-TTTCCCE---------------------ECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             cCHHHHHHHHHH-cCCCCCe---------------------eCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            999999999999 7777888                     9998  999999999999998 8998888888765

>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.70  E-value=1.1e-17  Score=127.75  Aligned_cols=60  Identities=25%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      .+..||.||.|+.+||.+|+..|+. +.||+...|+.||.+|||++++|||||||||---+
T Consensus         4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~   64 (71)
T 1wi3_A            4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK   64 (71)
T ss_dssp             CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence            3578999999999999999999999 99999999999999999999999999999997644

>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=127.71  Aligned_cols=57  Identities=44%  Similarity=0.704  Sum_probs=55.1

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      +||.||.|+..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+|
T Consensus         2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k   58 (58)
T 3rkq_A            2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK   58 (58)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence            578899999999999999999999999999999999999999999999999999986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2e-17  Score=139.01  Aligned_cols=87  Identities=17%  Similarity=0.396  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhH
Q psy4272          83 GKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDL  162 (575)
Q Consensus        83 ~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L  162 (575)
                      .....+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRK-DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCH-HHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEESSHHHH
T ss_pred             CCCCcCeECCCCCCccCCH-HHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHH
Confidence            3457899999999999988 7999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHhhcc
Q psy4272         163 KKHVTFKHA  171 (575)
Q Consensus       163 ~~H~r~~H~  171 (575)
                      ..|+++|+.
T Consensus        81 ~~H~~~h~~   89 (96)
T 2dmd_A           81 TVHLRSHTG   89 (96)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHHHhcC
Confidence            999999443

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.70  E-value=1.2e-17  Score=133.72  Aligned_cols=60  Identities=23%  Similarity=0.338  Sum_probs=56.9

Q ss_pred             CCCcccCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.||.||..|+.+||..|.. ++||+..+|++||..+||++++|+|||||||+|+||..+
T Consensus         2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~   62 (72)
T 1uhs_A            2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG   62 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence            467899999999999999996 999999999999999999999999999999999999664

>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2e-17  Score=133.29  Aligned_cols=61  Identities=23%  Similarity=0.331  Sum_probs=56.9

Q ss_pred             CCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       325 r~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ++|+.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+..
T Consensus         9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~   69 (75)
T 2da5_A            9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK   69 (75)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred             CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence            4567899999999999999999999999999999999999999999999999999977543

>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=126.44  Aligned_cols=54  Identities=44%  Similarity=0.762  Sum_probs=51.2

Q ss_pred             ccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         328 QVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       328 t~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      |.||..|+.+||..|..++||+..+|.+||..+||++++|+|||||||+|+||+
T Consensus         2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~   55 (56)
T 3a03_A            2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ   55 (56)
T ss_dssp             --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence            689999999999999999999999999999999999999999999999999985

>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*

Probab=99.69  E-value=1.1e-17  Score=129.49  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=48.7

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      .+.+|.|+.||..|+.+|+..|..++||+..++.+||..+||++.+|+|||||||+|+|
T Consensus         3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k   61 (61)
T 1akh_A            3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK   61 (61)
T ss_dssp             ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence            46788999999999999999999999999999999999999999999999999999986

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.69  E-value=1.6e-17  Score=133.29  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=56.9

Q ss_pred             CCCcccCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ++.||.||..|+.+||..|.. ++||+..++++||..+||++++|+|||||||+|+||..+
T Consensus         3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~   63 (73)
T 2hi3_A            3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG   63 (73)
T ss_dssp             CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence            577999999999999999995 999999999999999999999999999999999999664

>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=2.2e-17  Score=132.86  Aligned_cols=63  Identities=22%  Similarity=0.369  Sum_probs=59.4

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..++.||.||..|+.+|+..|..++||+..++++||..+||++++|+|||||||+|+||.+..
T Consensus         5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~   67 (74)
T 2ly9_A            5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN   67 (74)
T ss_dssp             CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence            457889999999999999999999999999999999999999999999999999999997654

>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2e-17  Score=133.78  Aligned_cols=63  Identities=21%  Similarity=0.407  Sum_probs=58.5

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ..+.|+.||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||..+..
T Consensus         8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~   70 (76)
T 2dn0_A            8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR   70 (76)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred             CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence            345689999999999999999999999999999999999999999999999999999977543

>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1

Probab=99.68  E-value=1.6e-17  Score=140.78  Aligned_cols=64  Identities=42%  Similarity=0.739  Sum_probs=56.9

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ...+|.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+.
T Consensus        32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~   95 (97)
T 1b72_A           32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE   95 (97)
T ss_dssp             -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence            4678899999999999999999999999999999999999999999999999999999997653

>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.68  E-value=3.2e-17  Score=135.51  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         329 VYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       329 ~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      .||..||.+||+.|..++||+..+|++||..|||++++|+|||||||+||||+.+...
T Consensus        17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~   74 (89)
T 2ecb_A           17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME   74 (89)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence            7899999999999999999999999999999999999999999999999999776544

>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.68  E-value=4.9e-17  Score=130.45  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..+.+|.|+.|+..|+.+|+..|..   ++||+..++++||..+||++++|+|||||||+|+|+....
T Consensus         4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~   71 (73)
T 1x2n_A            4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS   71 (73)
T ss_dssp             CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence            3567889999999999999999987   9999999999999999999999999999999999986543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=9.3e-18  Score=147.50  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=99.5

Q ss_pred             cccccCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhh---cCCCCcccccccCccccChhhHHHHh
Q psy4272          61 DVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQ---KRLAQGLTCLQCGRSYCRPYNLKRHI  137 (575)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~---H~~~kp~~C~~Cgk~F~~~~~L~~H~  137 (575)
                      -.|..|.+.+.....+..|...+....+|.|.+|++.|... ..|..|++.   |.++++|.|.+|++.|.....|..|+
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   86 (124)
T 2dlq_A            8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK-ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM   86 (124)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSH-HHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCH-HHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence            35777877777766677777777888999999999999988 789999985   68899999999999999999999999


Q ss_pred             hhhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         138 QYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      ++|+++++ |.|.+|++.|.....|..|++.+|.++.
T Consensus        87 ~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           87 VSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHSSSCS-EECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHcCCCCC-ccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            99999999 9999999999999999999997787653

>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}

Probab=99.67  E-value=3.7e-17  Score=138.27  Aligned_cols=64  Identities=22%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ...+|.|+.||..|+.+|+..|..++||+..+|++||..|||++++|+|||||||+|+||.+..
T Consensus        23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk   86 (96)
T 3nar_A           23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK   86 (96)
T ss_dssp             ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence            4567889999999999999999999999999999999999999999999999999999997643

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=6.7e-17  Score=135.44  Aligned_cols=88  Identities=14%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCC--CCCcccccccccccChhh
Q psy4272          84 KATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK--APQFPCLYCSYRARHKHD  161 (575)
Q Consensus        84 ~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge--kp~~~C~~Cgk~F~~~~~  161 (575)
                      .+..+|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++  ++ |.|.+|++.|.....
T Consensus         3 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~~f~~~~~   80 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDV-YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGKGFSRPDH   80 (95)
T ss_dssp             CCCSCEECSSSCCEESSS-HHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCCCBSSHHH
T ss_pred             CCCCCeECCCCCCccCCh-HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccchhCCHHH
Confidence            457889999999999988 79999999999999999999999999999999999999997  88 999999999999999


Q ss_pred             HHHHHHhhccCc
Q psy4272         162 LKKHVTFKHAAY  173 (575)
Q Consensus       162 L~~H~r~~H~~~  173 (575)
                      |..|++..|.++
T Consensus        81 L~~H~~~~H~~~   92 (95)
T 2yt9_A           81 LNGHIKQVHSGP   92 (95)
T ss_dssp             HHHHHHHTSCCC
T ss_pred             HHHHHHHhcCCC
Confidence            999997557654

>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.67  E-value=2.9e-17  Score=138.70  Aligned_cols=65  Identities=20%  Similarity=0.333  Sum_probs=61.3

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------CChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------LTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~---------------l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ..++||.|+.|+..|+.+||..|..++||+..+|++||..+|               |++.+|+|||||||+|+||..+.
T Consensus         4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~   83 (95)
T 2cuf_A            4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI   83 (95)
T ss_dssp             SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence            457889999999999999999999999999999999999999               99999999999999999997654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.9e-17  Score=140.95  Aligned_cols=89  Identities=17%  Similarity=0.294  Sum_probs=83.7

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChh
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKH  160 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~  160 (575)
                      ..+++.++|.| +|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|....
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~   79 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRD   79 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSH-HHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEESCHH
T ss_pred             CCCCCCCCEec-cCCCccCCH-HHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchhcCHH
Confidence            45677899999 999999988 7999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hHHHHHHhhccC
Q psy4272         161 DLKKHVTFKHAA  172 (575)
Q Consensus       161 ~L~~H~r~~H~~  172 (575)
                      .|..|+++||..
T Consensus        80 ~l~~H~~~~~~~   91 (110)
T 2csh_A           80 SFHRHVTSCTKS   91 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHcccc
Confidence            999999996653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.67  E-value=3e-17  Score=133.41  Aligned_cols=81  Identities=15%  Similarity=0.318  Sum_probs=77.6

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHH
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVT  167 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r  167 (575)
                      ||.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|..|++
T Consensus         1 ~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRS-STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSH-HHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC-EECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCc-hhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC-CcCCCcchhhCChHHHHHHHH
Confidence            68899999999988 7999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             hhc
Q psy4272         168 FKH  170 (575)
Q Consensus       168 ~~H  170 (575)
                      +|+
T Consensus        79 ~H~   81 (82)
T 2kmk_A           79 KHT   81 (82)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            943

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=5.6e-17  Score=139.46  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=86.0

Q ss_pred             CCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccccccccc
Q psy4272          78 DGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRAR  157 (575)
Q Consensus        78 ~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~  157 (575)
                      .+...+...++|.|.+|++.|... ..|..|+++|  .++|.|.+|++.|.....|.+|++ |+++++ |.|.+|++.|.
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~-~~C~~C~~~f~   80 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSL-LEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK-LTCLECMRTFK   80 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSH-HHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG-GEEGGGTEECS
T ss_pred             ccCcccCCCcCeECCCCCCccCCH-HHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCC-ccCccccchhC
Confidence            345567788999999999999988 7999999999  479999999999999999999996 999999 99999999999


Q ss_pred             ChhhHHHHHHhhccCcccc
Q psy4272         158 HKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       158 ~~~~L~~H~r~~H~~~~~~  176 (575)
                      ....|..|++.+|.++++|
T Consensus        81 ~~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           81 SSFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             SHHHHHHHHHHTSCCCCCC
T ss_pred             CHHHHHHHHHHHcCCCCCC
Confidence            9999999998659888877

>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*

Probab=99.67  E-value=6.8e-17  Score=129.61  Aligned_cols=64  Identities=23%  Similarity=0.436  Sum_probs=59.7

Q ss_pred             CCCCcccCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         323 TGRFRQVYSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F---~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      .||.|+.|+..|+.+|+..|   ..++||+..++.+||..+||++.+|+|||||||+|+|+......
T Consensus         1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~   67 (73)
T 1puf_B            1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ   67 (73)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence            37889999999999999999   89999999999999999999999999999999999999776543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.66  E-value=4.3e-17  Score=135.10  Aligned_cols=86  Identities=21%  Similarity=0.407  Sum_probs=79.1

Q ss_pred             CCCCCCC--CCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHH
Q psy4272          86 TLPSPLK--AKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLK  163 (575)
Q Consensus        86 ~~p~~C~--~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~  163 (575)
                      .++|.|.  .|++.|... ..|..|+++|.++++|.|.+|++.|.....|..|+++|+++++ |.|.+|++.|.....|.
T Consensus         2 ~k~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~   79 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQS-GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERK   79 (90)
T ss_dssp             -CCEECCSSSCCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHH
T ss_pred             CCceECCCCCCCCccCCH-HHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCchhCCHHHHH
Confidence            4689998  599999988 7999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhccCcc
Q psy4272         164 KHVTFKHAAYL  174 (575)
Q Consensus       164 ~H~r~~H~~~~  174 (575)
                      .|+++ |.+++
T Consensus        80 ~H~~~-H~~~k   89 (90)
T 1a1h_A           80 RHTKI-HLRQK   89 (90)
T ss_dssp             HHHGG-GGC--
T ss_pred             HHHHH-hcccC
Confidence            99999 55543

>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P

Probab=99.66  E-value=7.9e-17  Score=133.86  Aligned_cols=63  Identities=24%  Similarity=0.451  Sum_probs=58.1

Q ss_pred             CCCCcccCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         323 TGRFRQVYSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F---~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      .||.|+.|+..|+.+|+..|   ..++||+..++++||..+||++.+|+|||||||+|+||.....
T Consensus         1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~   66 (87)
T 1b72_B            1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF   66 (87)
T ss_dssp             --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence            36889999999999999999   8999999999999999999999999999999999999976554

>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.65  E-value=4.9e-17  Score=127.01  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=56.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F---~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ..+|.|+.|+..|+.+|+..|   ..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus         2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~   64 (64)
T 1du6_A            2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN   64 (64)
T ss_dssp             CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence            357889999999999999999   899999999999999999999999999999999999873

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.65  E-value=2.8e-17  Score=144.79  Aligned_cols=110  Identities=15%  Similarity=0.292  Sum_probs=93.1

Q ss_pred             ccc--cCchHHHhhhccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccc--cCccccChhhHHHHh
Q psy4272          62 VAT--KTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQ--CGRSYCRPYNLKRHI  137 (575)
Q Consensus        62 ~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~--Cgk~F~~~~~L~~H~  137 (575)
                      .|.  .|.+.+.....+..|...+ ...+|.|.+|++.|... ..|..|+++|.++++|.|.+  |++.|.....|..|+
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~   84 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVES-SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV   84 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSH-HHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHH
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCH-HHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHH
Confidence            455  6777666555555565666 67899999999999988 79999999999999999986  999999999999999


Q ss_pred             hhhhCCCCCcccc--cccccccChhhHHHHHHhhccCccc
Q psy4272         138 QYECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAYLD  175 (575)
Q Consensus       138 r~H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~  175 (575)
                      ++|+++++ |.|.  .|++.|.+...|..|+++ |.++++
T Consensus        85 ~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k~  122 (124)
T 1ubd_C           85 RIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILT-HAKAKN  122 (124)
T ss_dssp             HHHHCCCC-CCCCSTTCCCCCSSTTTTHHHHHH-HC----
T ss_pred             HHhCCCCc-eECCCCCCCCccCCHHHHHHHHHH-Hccccc
Confidence            99999999 9995  599999999999999999 666554

>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=8.9e-17  Score=135.12  Aligned_cols=65  Identities=22%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHh---------------------CCChhhhhhcccchhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------------GLTERQIKIWFQNRRMKL  378 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l---------------------~l~~~~V~vWFqNrRak~  378 (575)
                      .++.||.||.|+..|+.+|++.|+.++||+..+|++||..+                     +|++.+|+|||||||+|+
T Consensus         3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~   82 (102)
T 2da6_A            3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE   82 (102)
T ss_dssp             TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence            35688999999999999999999999999999999999999                     799999999999999999


Q ss_pred             hhcCCc
Q psy4272         379 KRTHPD  384 (575)
Q Consensus       379 kk~~~~  384 (575)
                      |++.+.
T Consensus        83 kr~~~~   88 (102)
T 2da6_A           83 AFRQKL   88 (102)
T ss_dssp             HHHHHH
T ss_pred             HHhhHh
Confidence            986543

>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=126.09  Aligned_cols=58  Identities=47%  Similarity=0.716  Sum_probs=54.4

Q ss_pred             ccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         328 QVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       328 t~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      ..+|..|+.+||..|..++||+..+|.+||..+||++++|+|||||||+|+||.....
T Consensus         9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~   66 (69)
T 2l9r_A            9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS   66 (69)
T ss_dssp             CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred             CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence            4689999999999999999999999999999999999999999999999999977543

>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.64  E-value=6.2e-17  Score=129.11  Aligned_cols=60  Identities=33%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             CCCCcccCCHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         323 TGRFRQVYSSHQIVELEKEF-RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F-~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ..+.|++++..|+.+||..| ..++||+..+|++||..+||++++|+|||||||+|||+..
T Consensus         8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~   68 (72)
T 2cqx_A            8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG   68 (72)
T ss_dssp             CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence            45667788899999999999 9999999999999999999999999999999999999854

>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}

Probab=99.64  E-value=1e-16  Score=148.65  Aligned_cols=65  Identities=26%  Similarity=0.322  Sum_probs=52.9

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .+++||.||.||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+||||..+.
T Consensus        96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~  160 (164)
T 2xsd_C           96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA  160 (164)
T ss_dssp             ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred             cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence            45778899999999999999999999999999999999999999999999999999999997754

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.64  E-value=3.2e-17  Score=150.35  Aligned_cols=113  Identities=19%  Similarity=0.306  Sum_probs=96.9

Q ss_pred             cccccCchHHHhhhccCCCCCC-CCCCCC--------CCCCCCcchhhcchhHHHHHhhhcCCCCcccccc--cCccccC
Q psy4272          61 DVATKTLPVIQELLSQRDGKPV-GKATLP--------SPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQ--CGRSYCR  129 (575)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--------~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~--Cgk~F~~  129 (575)
                      -.|..|.+.|.....+..|... +....+        |.|.+|++.|... ..|..|+++|+++++|.|.+  |++.|..
T Consensus        26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK-YKLVNHIRVHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSH-HHHHHHTHHHHCCCSEECSCTTTCCEESC
T ss_pred             cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCH-HHHHHHHHhcCCCCcccCCcCCCCCccCC
Confidence            4577777777655555555443 444333        8999999999988 79999999999999999998  9999999


Q ss_pred             hhhHHHHhhhhhCCCCCccccc--ccccccChhhHHHHHHhhccCcccc
Q psy4272         130 PYNLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       130 ~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ...|.+|+++|+++++ |.|.+  |++.|.....|..|+++ |.++++|
T Consensus       105 ~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~  151 (155)
T 2rpc_A          105 SENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHV-HTSDKSG  151 (155)
T ss_dssp             HHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHSSTT-TTSCCCS
T ss_pred             HHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHHHHH-hcCCCCC
Confidence            9999999999999999 99997  99999999999999998 7788877

>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1

Probab=99.64  E-value=1.8e-16  Score=122.07  Aligned_cols=56  Identities=30%  Similarity=0.374  Sum_probs=53.9

Q ss_pred             CcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         326 FRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       326 ~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      +|+.|+..|+.+|+..|..   ++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus         1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~   59 (60)
T 1k61_A            1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI   59 (60)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence            3789999999999999999   9999999999999999999999999999999999984

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=9.2e-17  Score=139.75  Aligned_cols=97  Identities=12%  Similarity=0.080  Sum_probs=88.1

Q ss_pred             hccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhh--cCCCCccc-ccccCccc--cChhhHHHHhhhhhCCCCCcc
Q psy4272          74 LSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQ--KRLAQGLT-CLQCGRSY--CRPYNLKRHIQYECGKAPQFP  148 (575)
Q Consensus        74 ~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~--H~~~kp~~-C~~Cgk~F--~~~~~L~~H~r~H~gekp~~~  148 (575)
                      ..+..|...+.+.++|.|.+|++.|... ..|..|+++  |.+.++|. |.+|++.|  .....|.+|+++|+++++ |.
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~-~~   82 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTL-VELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSH-HHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS-CB
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCH-HHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc-eE
Confidence            3456777888999999999999999988 799999999  88888765 99999999  999999999999999999 99


Q ss_pred             cccccccccChhhHHHHHHhhccC
Q psy4272         149 CLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       149 C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      |.+|++.|.....|..|+++||..
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCc
Confidence            999999999999999999996654

>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}

Probab=99.63  E-value=1.4e-16  Score=122.43  Aligned_cols=52  Identities=25%  Similarity=0.434  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         330 YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       330 ~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      -|..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|||+.
T Consensus        11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg   62 (66)
T 3nau_A           11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG   62 (66)
T ss_dssp             CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence            3789999999999999999999999999999999999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.63  E-value=1.1e-16  Score=123.19  Aligned_cols=58  Identities=24%  Similarity=0.498  Sum_probs=52.8

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      ||||.|.+||+.|.....|.+|+++|+|++| |.|.+||+.|.+...|..|+++ |+++.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~-Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKV-HQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGG-GSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCc-cCCCC
Confidence            7899999999999999999999999999999 9999999999999999999998 77653

>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A

Probab=99.63  E-value=1.1e-16  Score=135.20  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH------------------hC---CChhhhhhcccchhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKE------------------LG---LTERQIKIWFQNRRMKL  378 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~------------------l~---l~~~~V~vWFqNrRak~  378 (575)
                      .++.||.||.|+..|+.+||..|..++||+..+|++||..                  ||   |++.+|+|||||||+|+
T Consensus         6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~   85 (99)
T 1lfb_A            6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE   85 (99)
T ss_dssp             -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence            4678899999999999999999999999999999999999                  88   99999999999999999


Q ss_pred             hhcCCcc
Q psy4272         379 KRTHPDM  385 (575)
Q Consensus       379 kk~~~~~  385 (575)
                      |++++..
T Consensus        86 k~k~~~~   92 (99)
T 1lfb_A           86 AFRHKLA   92 (99)
T ss_dssp             SCCC---
T ss_pred             HHhchhh
Confidence            8876543

>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1

Probab=99.63  E-value=1.5e-16  Score=144.92  Aligned_cols=62  Identities=26%  Similarity=0.366  Sum_probs=56.4

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      +++||.||.||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+||||++
T Consensus        85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k  146 (146)
T 1au7_A           85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK  146 (146)
T ss_dssp             ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence            56788999999999999999999999999999999999999999999999999999999863

>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A

Probab=99.63  E-value=1.7e-16  Score=146.97  Aligned_cols=61  Identities=28%  Similarity=0.456  Sum_probs=55.2

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      .++||.||.||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||.
T Consensus        99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~  159 (160)
T 1e3o_C           99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI  159 (160)
T ss_dssp             -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence            4678899999999999999999999999999999999999999999999999999999985

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.63  E-value=2.5e-17  Score=143.84  Aligned_cols=105  Identities=16%  Similarity=0.304  Sum_probs=94.2

Q ss_pred             cccc--CchHHHhhhccCCCCCCCCCCCCCCCC--CCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHh
Q psy4272          62 VATK--TLPVIQELLSQRDGKPVGKATLPSPLK--AKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHI  137 (575)
Q Consensus        62 ~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~C~--~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~  137 (575)
                      .|..  |.+.+.....+..|...+.+..+|.|.  .|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+
T Consensus         8 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   86 (119)
T 2jp9_A            8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRS-DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT   86 (119)
T ss_dssp             CCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             eCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCH-HHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHH
Confidence            4553  777766666666666677778899999  799999988 79999999999999999999999999999999999


Q ss_pred             hhhhCCCCCccc--ccccccccChhhHHHHHHh
Q psy4272         138 QYECGKAPQFPC--LYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       138 r~H~gekp~~~C--~~Cgk~F~~~~~L~~H~r~  168 (575)
                      ++|+++++ |.|  +.||+.|.....|..|+++
T Consensus        87 ~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           87 RTHTGEKP-FSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHHHTCCC-EECCSTTCCCEESSHHHHHHHHHT
T ss_pred             HHhcCCCC-eeCCCCCCccccCCHHHHHHHHhc
Confidence            99999999 999  8999999999999999998

>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=131.47  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             ccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         328 QVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       328 t~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      ..||..||.+||..|..++||+..+|++||..+||++++|+|||||||+|+|+..+...
T Consensus        18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~   76 (89)
T 2dmp_A           18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL   76 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred             ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence            34899999999999999999999999999999999999999999999999999776543

>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*

Probab=99.62  E-value=2.8e-16  Score=129.14  Aligned_cols=61  Identities=26%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             CCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ++.|++|+..|+.+|+..|..   ++||+..++++||..+||++.+|+|||||||+|+|+....
T Consensus         3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~   66 (83)
T 1le8_B            3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA   66 (83)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence            345677999999999999999   9999999999999999999999999999999999997644

>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}

Probab=99.62  E-value=3.4e-16  Score=128.60  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.|+.|+..|+.+|+..|..   ++||+..+|++||..+||+++||+|||||||+|+|+...
T Consensus         4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~   70 (83)
T 2dmn_A            4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML   70 (83)
T ss_dssp             CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence            3467888999999999999999988   599999999999999999999999999999999998543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.62  E-value=3.4e-16  Score=133.96  Aligned_cols=92  Identities=18%  Similarity=0.367  Sum_probs=85.3

Q ss_pred             cCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccC
Q psy4272         112 KRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKEL  191 (575)
Q Consensus       112 H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~  191 (575)
                      ..++++|.|.+|++.|.....|.+|+++|.++++ |.|.+|++.|.....|..|+++ |.++++|               
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~---------------   74 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYI-HSKEKPF---------------   74 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGG-SCCCCTT---------------
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHH-hCCCCCe---------------
Confidence            4567899999999999999999999999999999 9999999999999999999998 7777777               


Q ss_pred             CCCCCCcchhhhhhccChhhhHhhhhhhhhhhccc
Q psy4272         192 SPGPKAENRHRFREFLNEHRNLERNVSHEEIRTHK  226 (575)
Q Consensus       192 sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~~~  226 (575)
                            .|..|++.|.....|..|+++|...+.+.
T Consensus        75 ------~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           75 ------KCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             ------SCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             ------ECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence                  99999999999999999999998876654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=2.9e-16  Score=131.76  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=83.6

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhccccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKE  190 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e  190 (575)
                      .+.++++|.|.+|++.|.....|..|+++|.++++ |.|.+|++.|.....|..|+++ |.++++|              
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~--------------   65 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI-HSDERPF--------------   65 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHH-SCCCCCE--------------
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHH-hCCCCCc--------------
Confidence            35688999999999999999999999999999999 9999999999999999999999 7777878              


Q ss_pred             CCCCCCCcchhhhhhccChhhhHhhhhhhhhhh
Q psy4272         191 LSPGPKAENRHRFREFLNEHRNLERNVSHEEIR  223 (575)
Q Consensus       191 ~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~  223 (575)
                             .|..|++.|.....|..|+++|.+.+
T Consensus        66 -------~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           66 -------KCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             -------ECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             -------cCCCCCCccCCHHHHHHHHHHhcCCC
Confidence                   99999999999999999998886543

>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1

Probab=99.61  E-value=4.2e-16  Score=129.38  Aligned_cols=60  Identities=28%  Similarity=0.338  Sum_probs=56.4

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      .++++.|+.|+..|+.+|+..|..   ++||+..+|++||..+||++++|+|||||||+|+|.
T Consensus        25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~   87 (87)
T 1mnm_C           25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT   87 (87)
T ss_dssp             ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence            345667999999999999999999   999999999999999999999999999999999984

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.1e-17  Score=141.42  Aligned_cols=98  Identities=11%  Similarity=-0.052  Sum_probs=89.3

Q ss_pred             hHHHHHhhhcCCCCcccccccCccccChhhHHHHhhh--hhCCCCCcccccccccc--cChhhHHHHHHhhccCcccchh
Q psy4272         103 KNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQY--ECGKAPQFPCLYCSYRA--RHKHDLKKHVTFKHAAYLDHFQ  178 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~--H~gekp~~~C~~Cgk~F--~~~~~L~~H~r~~H~~~~~~~~  178 (575)
                      ..|..|+++|+++++|.|.+|++.|.....|..|+++  |.++++.+.|.+|++.|  .....|..|+++ |.++++|  
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~~~~~--   81 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDAQKVL--   81 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCCCSSC--
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-cCCCcce--
Confidence            4678899999999999999999999999999999999  88888724599999999  999999999998 8888888  


Q ss_pred             hhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhh
Q psy4272         179 AVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEI  222 (575)
Q Consensus       179 ~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~  222 (575)
                                         .|..|++.|.....|..|+++|...
T Consensus        82 -------------------~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           82 -------------------KCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             -------------------BCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             -------------------ECCCCCCccCCHHHHHHHHHHhCCc
Confidence                               9999999999999999999887554

>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.6e-16  Score=121.67  Aligned_cols=56  Identities=13%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             cccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       327 Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      +..++..|+.+||..|..++||+..+|++||..+||++++|+|||||||||.++.+
T Consensus         7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~   62 (64)
T 2e19_A            7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ   62 (64)
T ss_dssp             CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred             CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence            34567899999999999999999999999999999999999999999999988743

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=3.6e-16  Score=134.37  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEV  186 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~  186 (575)
                      .++++|+++++|.|.+|++.|.....|..|+++|.  ++ |.|.+|++.|.....|..|+ + |.++++|          
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~-~~C~~C~~~f~~~~~l~~H~-~-H~~~~~~----------   70 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NA-AVCPYCSLRFFSPELKQEHE-S-KCEYKKL----------   70 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HS-BCCTTTCCCBSSHHHHHHHH-H-HCSTGGG----------
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CC-ccCCCCCCccCCHHHHHHHH-H-cCCCCCc----------
Confidence            35678999999999999999999999999999995  68 99999999999999999999 4 8888888          


Q ss_pred             ccccCCCCCCCcchhhhhhccChhhhHhhhh-hhhhhhccccC
Q psy4272         187 TTKELSPGPKAENRHRFREFLNEHRNLERNV-SHEEIRTHKKH  228 (575)
Q Consensus       187 ~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~-th~~~~~~~~~  228 (575)
                                 .|..|++.|.....|..|++ .|.+.+.+...
T Consensus        71 -----------~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           71 -----------TCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -----------EEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -----------cCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence                       99999999999999999997 88877766553

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.61  E-value=4.4e-16  Score=128.90  Aligned_cols=87  Identities=21%  Similarity=0.403  Sum_probs=79.1

Q ss_pred             CCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccC
Q psy4272         114 LAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKEL  191 (575)
Q Consensus       114 ~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~  191 (575)
                      |+++|.|.  .|++.|.....|.+|+++|.++++ |.|.+|++.|.....|..|+++ |.++++|               
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~---------------   63 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT-HTGEKPF---------------   63 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHH-HHCCCCE---------------
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHH-cCCCCCc---------------
Confidence            47899998  599999999999999999999999 9999999999999999999998 7777778               


Q ss_pred             CCCCCCcchhhhhhccChhhhHhhhhhhhhhh
Q psy4272         192 SPGPKAENRHRFREFLNEHRNLERNVSHEEIR  223 (575)
Q Consensus       192 sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~  223 (575)
                            .|..|++.|.....|..|+.+|.+.+
T Consensus        64 ------~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           64 ------ACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             ------ECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             ------cCCCCCchhCCHHHHHHHHHHhcccC
Confidence                  99999999999999999999997653

>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}

Probab=99.61  E-value=5.5e-16  Score=142.21  Aligned_cols=61  Identities=23%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      ..++||.||.|+..|+.+|+..|..++||+..+|++||..+||++++|+|||||||+|+||
T Consensus        90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk  150 (151)
T 3d1n_I           90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN  150 (151)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence            3567889999999999999999999999999999999999999999999999999999997

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=4.4e-16  Score=134.32  Aligned_cols=91  Identities=21%  Similarity=0.342  Sum_probs=84.6

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccc
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTK  189 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~  189 (575)
                      ..|+++++|.| .|++.|.....|.+|+++|.++++ |.|.+|++.|.....|..|+++ |.++++|             
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~-------------   66 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKI-HTGIKPY-------------   66 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTT-TCCCCCE-------------
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHH-cCCCCCe-------------
Confidence            36899999999 999999999999999999999999 9999999999999999999998 7777777             


Q ss_pred             cCCCCCCCcchhhhhhccChhhhHhhhhhhhhhhc
Q psy4272         190 ELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRT  224 (575)
Q Consensus       190 e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~  224 (575)
                              .|..|++.|.....|..|+++|.....
T Consensus        67 --------~C~~C~~~f~~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           67 --------ECNICAKRFMWRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             --------ECSSSCCEESCHHHHHHHHHHHHHHHH
T ss_pred             --------eCCCCcchhcCHHHHHHHHHHcccccc
Confidence                    999999999999999999999876543

>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.59  E-value=5.6e-16  Score=119.47  Aligned_cols=51  Identities=33%  Similarity=0.434  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         332 SHQIVELEKEF-RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       332 ~~ql~~L~~~F-~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ..|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus         9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~   60 (64)
T 1x2m_A            9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG   60 (64)
T ss_dssp             SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred             chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence            45799999999 5799999999999999999999999999999999999743

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-15  Score=127.05  Aligned_cols=84  Identities=18%  Similarity=0.333  Sum_probs=78.7

Q ss_pred             CCCCCCCCCC--CcchhhcchhHHHHHhhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccccccccCh
Q psy4272          84 KATLPSPLKA--KLSDYENKMKNVRESIRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHK  159 (575)
Q Consensus        84 ~~~~p~~C~~--C~~~f~~~~~~L~~H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~  159 (575)
                      ...++|.|.+  |++.|... ..|..|+++|.++++|.|.  .|++.|.....|.+|+++|+++++ |.|.+|++.|...
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~   88 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKS-SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRS   88 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCH-HHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS-CBCSSSCCBCSSH
T ss_pred             ccCcceEcCCCCCCCcccCH-HHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCcCccCCH
Confidence            3456899997  99999888 7999999999999999996  699999999999999999999999 9999999999999


Q ss_pred             hhHHHHHHhh
Q psy4272         160 HDLKKHVTFK  169 (575)
Q Consensus       160 ~~L~~H~r~~  169 (575)
                      ..|..|+++|
T Consensus        89 ~~l~~H~~~H   98 (100)
T 2ebt_A           89 DHLALHMKRH   98 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999994

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=1.1e-15  Score=126.22  Aligned_cols=82  Identities=21%  Similarity=0.398  Sum_probs=77.8

Q ss_pred             CCCCCCCC--CcchhhcchhHHHHHhhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccccccccChhh
Q psy4272          86 TLPSPLKA--KLSDYENKMKNVRESIRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHD  161 (575)
Q Consensus        86 ~~p~~C~~--C~~~f~~~~~~L~~H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~  161 (575)
                      ..+|.|.+  |++.|... ..|..|+++|.++++|.|.  .|++.|.....|.+|+++|+++++ |.|.+|++.|.....
T Consensus         3 ~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~   80 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKS-SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDH   80 (89)
T ss_dssp             CCCEECCSTTTCCEESSH-HHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC-EECSSSSCEESSHHH
T ss_pred             CCCeeCCCCCCCCcCCCH-HHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCcccCCHHH
Confidence            56799999  99999987 7999999999999999997  599999999999999999999999 999999999999999


Q ss_pred             HHHHHHhh
Q psy4272         162 LKKHVTFK  169 (575)
Q Consensus       162 L~~H~r~~  169 (575)
                      |..|+++|
T Consensus        81 l~~H~~~H   88 (89)
T 2wbs_A           81 LALHMKRH   88 (89)
T ss_dssp             HHHHGGGG
T ss_pred             HHHHHHhh
Confidence            99999983

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.58  E-value=1e-15  Score=124.28  Aligned_cols=81  Identities=27%  Similarity=0.560  Sum_probs=77.1

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPK  196 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~  196 (575)
                      ||.|.+|++.|.....|..|+++|.++++ |.|.+|++.|.....|..|+++ |.+++++                    
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~--------------------   58 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI-HTGEKPH--------------------   58 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHH-HHTCCCE--------------------
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHH-hcCCCCC--------------------
Confidence            68999999999999999999999999999 9999999999999999999998 7777777                    


Q ss_pred             CcchhhhhhccChhhhHhhhhhhh
Q psy4272         197 AENRHRFREFLNEHRNLERNVSHE  220 (575)
Q Consensus       197 ~~C~~C~k~F~~~~~l~~H~~th~  220 (575)
                       .|..|++.|.....|..|+++|.
T Consensus        59 -~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           59 -KCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             -ECTTTSCEESSHHHHHHHHHHHC
T ss_pred             -cCCCcchhhCChHHHHHHHHhhC
Confidence             99999999999999999999885

>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A

Probab=99.57  E-value=1.2e-15  Score=140.35  Aligned_cols=61  Identities=26%  Similarity=0.372  Sum_probs=57.8

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      .++||.||.|+..|+.+|+..|..++||+..+|.+||..+||++++|+|||||||+|+||.
T Consensus        94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~  154 (155)
T 3l1p_A           94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS  154 (155)
T ss_dssp             CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence            4567889999999999999999999999999999999999999999999999999999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.56  E-value=1.1e-15  Score=117.47  Aligned_cols=58  Identities=16%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ++||.|.+|++.|... +.|..|+++|+|++||.|.+||+.|.....|.+|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~-~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDA-SGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSH-HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCH-HHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999988 799999999999999999999999999999999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.2e-15  Score=126.11  Aligned_cols=87  Identities=21%  Similarity=0.356  Sum_probs=78.9

Q ss_pred             CCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccC-cccchhhhhhhhhcccccC
Q psy4272         113 RLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA-YLDHFQAVQEELEVTTKEL  191 (575)
Q Consensus       113 ~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~-~~~~~~~~~~~~~~~t~e~  191 (575)
                      +++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|..|+++|+.. .++|               
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~---------------   66 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY---------------   66 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHCCCCCSSB---------------
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhcCCCCCce---------------
Confidence            578999999999999999999999999999999 99999999999999999999995433 2667               


Q ss_pred             CCCCCCcchhhhhhccChhhhHhhhh-hhhh
Q psy4272         192 SPGPKAENRHRFREFLNEHRNLERNV-SHEE  221 (575)
Q Consensus       192 sp~p~~~C~~C~k~F~~~~~l~~H~~-th~~  221 (575)
                            .|..|++.|.....|..|++ .|.+
T Consensus        67 ------~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           67 ------ICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             ------CCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             ------ECCCccchhCCHHHHHHHHHHhcCC
Confidence                  99999999999999999985 6644

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.54  E-value=5.6e-16  Score=128.34  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHH
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH  165 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H  165 (575)
                      ++||.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|++ .+ |.|..|++.|.....|..|
T Consensus         1 ek~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~-~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQCRICMRNFSRS-DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP-ILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEECTTTCCEESCH-HHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCH-HHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHhhhHHH
Confidence            3689999999999988 7999999999999999999999999999999999999986 67 9999999999999999999


Q ss_pred             HHhhcc
Q psy4272         166 VTFKHA  171 (575)
Q Consensus       166 ~r~~H~  171 (575)
                      ++.+|.
T Consensus        78 ~~~~h~   83 (88)
T 1llm_C           78 VARLKK   83 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998664

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.53  E-value=3.5e-15  Score=123.47  Aligned_cols=83  Identities=19%  Similarity=0.352  Sum_probs=76.6

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPG  194 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~  194 (575)
                      ++||.|.+|++.|.....|..|+++|+++++ |.|.+|++.|.....|..|+++||.  .++                  
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~--~~~------------------   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI--LPI------------------   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHTH--HHH------------------
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhCC--Ccc------------------
Confidence            5799999999999999999999999999999 9999999999999999999999763  455                  


Q ss_pred             CCCcchhhhhhccChhhhHhhhhhhhh
Q psy4272         195 PKAENRHRFREFLNEHRNLERNVSHEE  221 (575)
Q Consensus       195 p~~~C~~C~k~F~~~~~l~~H~~th~~  221 (575)
                         .|..|++.|.....|..|...+..
T Consensus        60 ---~c~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           60 ---LEDKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHhhhHHHHHHHHH
Confidence               899999999999999999876544

>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A

Probab=99.53  E-value=4e-15  Score=138.51  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=55.2

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ..+.||.||.||..|+.+|+..|..++||+..+|++||..+||++++|+|||||||+|+|+...
T Consensus        94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~  157 (164)
T 2d5v_A           94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL  157 (164)
T ss_dssp             ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred             CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence            3567899999999999999999999999999999999999999999999999999999998654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.2e-14  Score=117.35  Aligned_cols=72  Identities=15%  Similarity=0.336  Sum_probs=67.2

Q ss_pred             CCCCCCCCCC--CcchhhcchhHHHHHhh-hcCCCCcccccc--cCccccChhhHHHHhhhhhCCCCCccccccccccc
Q psy4272          84 KATLPSPLKA--KLSDYENKMKNVRESIR-QKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRAR  157 (575)
Q Consensus        84 ~~~~p~~C~~--C~~~f~~~~~~L~~H~r-~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~  157 (575)
                      ++..+|.|..  |++.|... ..|..|++ +|+++++|.|.+  |++.|.....|.+|+++|+++++ |.|.+||+.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNR-QYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSH-HHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCH-HHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCCCCCCCC
Confidence            4567898887  99999988 79999999 799999999999  99999999999999999999999 99999999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.49  E-value=1.3e-14  Score=118.48  Aligned_cols=78  Identities=21%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             CCCC--CCCcchhhcchhHHHHHhhhcCCCCcccccc--cCccccChhhHHHHhhhhhCCCCCccccc---ccccccChh
Q psy4272          88 PSPL--KAKLSDYENKMKNVRESIRQKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCLY---CSYRARHKH  160 (575)
Q Consensus        88 p~~C--~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~~---Cgk~F~~~~  160 (575)
                      ||.|  .+|++.|... ..|..|+++|.++++|.|.+  |++.|.....|.+|+++|++    |.|..   |++.|....
T Consensus         1 p~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~   75 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKH-NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWT   75 (85)
T ss_dssp             CEECCSTTCCCEESSH-HHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHH
T ss_pred             CccCCCCCCCcccCCH-HHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHH
Confidence            6889  9999999988 79999999999999999998  99999999999999999998    88999   999999999


Q ss_pred             hHHHHHHhhc
Q psy4272         161 DLKKHVTFKH  170 (575)
Q Consensus       161 ~L~~H~r~~H  170 (575)
                      .|..|+++||
T Consensus        76 ~l~~H~~~hh   85 (85)
T 2j7j_A           76 LYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999999865

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=7.6e-15  Score=120.29  Aligned_cols=70  Identities=17%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             HHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCC----CCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         105 VRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK----APQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       105 L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge----kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +..|+++|+++++|.|.+|++.|.....|.+|+++|.+.    ++ |.|.+|++.|.....|..|+++ |.++.++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~-~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~   76 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARHADN-CAGPDGV   76 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC-EECSSSCCEESCHHHHHHHHHH-CCCCCSC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc-eECCCCCChhCCHHHHHHHHHH-ccCCCCc
Confidence            456788888888888888888888888888888776654    67 8888888888888888888888 5555555

>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1

Probab=99.48  E-value=2.8e-14  Score=112.10  Aligned_cols=56  Identities=21%  Similarity=0.372  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         329 VYSSHQIVELEKEFR---LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       329 ~~t~~ql~~L~~~F~---~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .|+..|+.+|+..|.   .++||+..++++||..+||++++|+|||||||+|+||....
T Consensus         4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~   62 (67)
T 3k2a_A            4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID   62 (67)
T ss_dssp             --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred             cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence            799999999999999   99999999999999999999999999999999999986544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=9.3e-15  Score=117.73  Aligned_cols=71  Identities=23%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             HHHHhhhcCCCCcccccccCccccChhhHHHHhh-hhhCC-CCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         105 VRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQ-YECGK-APQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       105 L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r-~H~ge-kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |..|+++|+++++|.|.+|++.|.....|.+|++ .|.++ ++ |.|.+|++.|.....|..|++++|..+.+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~-~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSS-EECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCc-cCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            4579999999999999999999999999999997 68875 88 999999999999999999999988876653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-14  Score=122.30  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             hHHHHHhhhcCCCCcccccccCcccc-ChhhHHHHhhhhhC-CCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         103 KNVRESIRQKRLAQGLTCLQCGRSYC-RPYNLKRHIQYECG-KAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~Cgk~F~-~~~~L~~H~r~H~g-ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ..+..|+++|+++++|.|.+|++.|. ....|.+|+++|++ +++ |.|.+|++.|.+...|+.|+++ |.++++.
T Consensus        10 ~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~-~~C~~C~k~F~~~~~L~~H~~~-h~~~kp~   83 (98)
T 2gqj_A           10 GPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMA-EHSAKPS   83 (98)
T ss_dssp             CSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH-HSCSSSCCCCSCHHHHHHHHHH-HSCSCSS
T ss_pred             CcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC-EECCCCCCccCCHHHHHHHHHH-HcCCCCC
Confidence            34568999999999999999999999 99999999999999 999 9999999999999999999999 4455554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.46  E-value=3.9e-14  Score=119.46  Aligned_cols=84  Identities=20%  Similarity=0.361  Sum_probs=78.4

Q ss_pred             CCCcccccc--cCccccChhhHHHHhhhhhCCCCCcccc--cccccccChhhHHHHHHhhccCcccchhhhhhhhhcccc
Q psy4272         114 LAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTK  189 (575)
Q Consensus       114 ~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~  189 (575)
                      ..++|.|.+  |++.|.....|.+|+++|.++++ |.|.  .|++.|.....|..|+++ |.++++|             
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~-------------   76 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRK-HTGAKPF-------------   76 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHH-HTSCCSC-------------
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHH-hCCCCCe-------------
Confidence            457899997  99999999999999999999999 9996  699999999999999998 7777888             


Q ss_pred             cCCCCCCCcchhhhhhccChhhhHhhhhhhh
Q psy4272         190 ELSPGPKAENRHRFREFLNEHRNLERNVSHE  220 (575)
Q Consensus       190 e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~  220 (575)
                              .|..|++.|.....|..|+++|.
T Consensus        77 --------~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           77 --------QCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             --------BCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             --------ECCCCcCccCCHHHHHHHHHHhC
Confidence                    99999999999999999999885

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=7.4e-14  Score=118.02  Aligned_cols=68  Identities=18%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             hHHHHHhhhcCCCCcccccccCccc-cChhhHHHHhhhhhCCCCCcccccccccccChhhHHHH-HHhhccCc
Q psy4272         103 KNVRESIRQKRLAQGLTCLQCGRSY-CRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH-VTFKHAAY  173 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~Cgk~F-~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H-~r~~H~~~  173 (575)
                      ..|..|++.|.++++|.|.+|++.| .....|+.|+++| ++++ |.|.+|||.|.....|+.| +++ |+++
T Consensus        20 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~-~~C~~Cgk~F~~~~~L~~H~~~~-H~~~   89 (96)
T 2ctd_A           20 SLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM-FTCHHCGKQLRSLAGMKYHVMAN-HNSL   89 (96)
T ss_dssp             CHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC-CCCSSSCCCCSSHHHHHHHHHHH-TCCC
T ss_pred             hHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC-eECCCCCCeeCCHHHHHHHhHHh-cCCC
Confidence            6788999999999999999999999 9999999999999 9999 9999999999999999999 777 7654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=3e-14  Score=113.19  Aligned_cols=62  Identities=23%  Similarity=0.496  Sum_probs=58.1

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      +.++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|..|+++|+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcC
Confidence            45689999999999999999999999999999999999 999999999999999999999944

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.46  E-value=3.8e-14  Score=116.89  Aligned_cols=82  Identities=22%  Similarity=0.435  Sum_probs=77.3

Q ss_pred             CCcccccc--cCccccChhhHHHHhhhhhCCCCCcccc--cccccccChhhHHHHHHhhccCcccchhhhhhhhhccccc
Q psy4272         115 AQGLTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKE  190 (575)
Q Consensus       115 ~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e  190 (575)
                      .++|.|.+  |++.|.....|..|+++|.++++ |.|.  .|++.|.....|..|+++ |.++++|              
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~--------------   66 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRK-HTGHRPF--------------   66 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHH-HHCCCCE--------------
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHH-cCCCCCc--------------
Confidence            46799999  99999999999999999999999 9997  599999999999999998 7778888              


Q ss_pred             CCCCCCCcchhhhhhccChhhhHhhhhhh
Q psy4272         191 LSPGPKAENRHRFREFLNEHRNLERNVSH  219 (575)
Q Consensus       191 ~sp~p~~~C~~C~k~F~~~~~l~~H~~th  219 (575)
                             .|..|++.|.....|..|+++|
T Consensus        67 -------~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           67 -------QCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             -------ECSSSSCEESSHHHHHHHGGGG
T ss_pred             -------cCCCCCcccCCHHHHHHHHHhh
Confidence                   9999999999999999999887

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=4.8e-14  Score=116.29  Aligned_cols=65  Identities=23%  Similarity=0.422  Sum_probs=57.6

Q ss_pred             hhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         109 IRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       109 ~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +.++.+.++|.|.+||+.|..+..|.+|+++|++++| |.|.+|++.|.+...|.+|++..|.++.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3457778889999999999999999999999999999 9999999999999999999876687653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=7.3e-14  Score=111.52  Aligned_cols=64  Identities=22%  Similarity=0.399  Sum_probs=50.0

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .+.++++|.|.+|++.|.....|.+|+++|+++++ |+|.+|++.|.+...|..|+++ |.++++|
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI-HSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHH-HCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            46677788888888888888888888888888888 8888888888888888888877 5665543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.4e-13  Score=110.69  Aligned_cols=66  Identities=12%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272          82 VGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus        82 ~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      .+...++|.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHS-SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCH-HHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             cCCCCCCEECCCCCcccCCH-HHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            34456777888888887776 6777788888877888888888888888888888888888877 776

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=7.3e-14  Score=112.64  Aligned_cols=65  Identities=25%  Similarity=0.431  Sum_probs=60.7

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhC---CCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECG---KAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g---ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++++|.|.+|++.|.....|.+|+++|++   +++ |.|.+|++.|.....|..|++.+|.++.+.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            48999999999999999999999999999996   899 999999999999999999998878887755

>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1

Probab=99.42  E-value=5.1e-14  Score=133.24  Aligned_cols=61  Identities=21%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChhhhhhcccchhhhh
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------------LTERQIKIWFQNRRMKL  378 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~V~vWFqNrRak~  378 (575)
                      .+++||.||.|+..|+.+|++.|..++||+..+|++||..+|                     |++.+|+|||||||+|+
T Consensus       112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~  191 (194)
T 1ic8_A          112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE  191 (194)
T ss_dssp             -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence            357789999999999999999999999999999999999999                     99999999999999998


Q ss_pred             hh
Q psy4272         379 KR  380 (575)
Q Consensus       379 kk  380 (575)
                      |.
T Consensus       192 k~  193 (194)
T 1ic8_A          192 AF  193 (194)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.1e-13  Score=111.59  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             cCCCCcccccc--cCccccChhhHHHHhh-hhhCCCCCccccc--ccccccChhhHHHHHHhhccCcccchhhhhhhhhc
Q psy4272         112 KRLAQGLTCLQ--CGRSYCRPYNLKRHIQ-YECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEV  186 (575)
Q Consensus       112 H~~~kp~~C~~--Cgk~F~~~~~L~~H~r-~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~  186 (575)
                      .+++++|.|..  |++.|.....|.+|++ .|+++++ |.|.+  |++.|.....|..|+++ |.++++|          
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~----------   69 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDY----------   69 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC-EECSCTTTCCEESSHHHHHHHHHH-HHTSCCC----------
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC-eECCCCCCcCccCCHHHHHHHHHH-hCCCCCe----------
Confidence            35788999997  9999999999999999 7999999 99999  99999999999999998 7788888          


Q ss_pred             ccccCCCCCCCcchhhhhhcc
Q psy4272         187 TTKELSPGPKAENRHRFREFL  207 (575)
Q Consensus       187 ~t~e~sp~p~~~C~~C~k~F~  207 (575)
                                 .|..|++.|.
T Consensus        70 -----------~C~~C~k~F~   79 (79)
T 2dlk_A           70 -----------ICEFSGPSSG   79 (79)
T ss_dssp             -----------SCCSSSCCCC
T ss_pred             -----------eCCCCCCCCC
Confidence                       9999999883

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.41  E-value=4.1e-14  Score=125.55  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=72.4

Q ss_pred             CCCCCCCCcchhh-----cchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhh
Q psy4272          87 LPSPLKAKLSDYE-----NKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHD  161 (575)
Q Consensus        87 ~p~~C~~C~~~f~-----~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~  161 (575)
                      ..+.|.+|.+.|.     .....|..|+ .|+++++|.|.+||+.|.....|.+|+++|  +++ |.|.+||+.|.+...
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~-~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT-KVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC-CBCTTTCCBCSSHHH
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC-CCCCCCCcccCCHHH
Confidence            4567888888887     5556788888 588999999999999999999999999999  889 999999999999999


Q ss_pred             HHHHHHhhcc
Q psy4272         162 LKKHVTFKHA  171 (575)
Q Consensus       162 L~~H~r~~H~  171 (575)
                      |..|+++||.
T Consensus       116 l~~H~~~h~~  125 (129)
T 2wbt_A          116 ALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHCC
Confidence            9999999654

>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.3e-13  Score=106.27  Aligned_cols=47  Identities=21%  Similarity=0.369  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhh
Q psy4272         332 SHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKL  378 (575)
Q Consensus       332 ~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~  378 (575)
                      .+|+.+|+++|..|++|+..++..||..+||++++|||||||||++.
T Consensus        14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~   60 (71)
T 2da7_A           14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ   60 (71)
T ss_dssp             THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence            57899999999999999999999999999999999999999999853

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.3e-13  Score=111.38  Aligned_cols=79  Identities=11%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCC----CcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272          76 QRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLA----QGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus        76 ~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~----kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      +..|.+.+...++|.|.+|++.|... ..|..|+++|.+.    ++|.|.+|++.|.....|.+|+++|+++++ +.|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~-~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~~~~   80 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQK-QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGEN   80 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSH-HHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS-CCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCH-HHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC-cccCC
Confidence            45677888899999999999999988 7999999877655    799999999999999999999999999999 99999


Q ss_pred             ccccc
Q psy4272         152 CSYRA  156 (575)
Q Consensus       152 Cgk~F  156 (575)
                      |+..|
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=108.67  Aligned_cols=63  Identities=25%  Similarity=0.546  Sum_probs=55.4

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLD  175 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~  175 (575)
                      .|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|..|+++|| ++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~-~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFH-GDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHH-SSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHh-CCCC
Confidence            47888999999999999999999999999999999 999999999999999999999844 4443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1e-13  Score=111.50  Aligned_cols=65  Identities=23%  Similarity=0.466  Sum_probs=61.2

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ..+.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~-H~~~~p~   75 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRV-HTGSGPS   75 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGG-SCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            457789999999999999999999999999999999 9999999999999999999998 7788777

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=8.6e-14  Score=108.32  Aligned_cols=62  Identities=24%  Similarity=0.425  Sum_probs=57.6

Q ss_pred             hhhcCCCCcccccccCccccChhhHHHHhhh-h-hCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         109 IRQKRLAQGLTCLQCGRSYCRPYNLKRHIQY-E-CGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       109 ~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~-H-~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      +++|+++++|.|.+|++.|.....|.+|+++ | .++++ |.|.+|++.|.+...|..|++++|.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC-EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC-eECCCCCCccCCHHHHHHHHHHHcC
Confidence            4689999999999999999999999999998 7 68999 9999999999999999999999764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.5e-13  Score=103.50  Aligned_cols=56  Identities=29%  Similarity=0.678  Sum_probs=50.3

Q ss_pred             CCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhc
Q psy4272         114 LAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       114 ~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |+++|.|.+|++.|.....|..|+++|+++++ |.|.+|++.|.....|..|+++||
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhc
Confidence            46899999999999999999999999999999 999999999999999999999966

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.40  E-value=1.6e-13  Score=111.84  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=71.8

Q ss_pred             cccc--cccCccccChhhHHHHhhhhhCCCCCccccc--ccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCC
Q psy4272         117 GLTC--LQCGRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELS  192 (575)
Q Consensus       117 p~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~s  192 (575)
                      ||.|  ..|++.|.....|..|+++|+++++ |.|.+  |++.|.....|..|+++|+ +   +                
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~-~---~----------------   59 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHA-G---Y----------------   59 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHH-S---E----------------
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhC-C---C----------------
Confidence            6899  8999999999999999999999999 99998  9999999999999999944 4   5                


Q ss_pred             CCCCCcchh---hhhhccChhhhHhhhhhh
Q psy4272         193 PGPKAENRH---RFREFLNEHRNLERNVSH  219 (575)
Q Consensus       193 p~p~~~C~~---C~k~F~~~~~l~~H~~th  219 (575)
                           .|..   |++.|.....|..|+++|
T Consensus        60 -----~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           60 -----PCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             -----ECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             -----CCCCCCCCCCccCCHHHHHHHHHhc
Confidence                 8888   999999999999998876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=4e-13  Score=107.19  Aligned_cols=64  Identities=22%  Similarity=0.414  Sum_probs=59.8

Q ss_pred             CCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCc
Q psy4272          82 VGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQF  147 (575)
Q Consensus        82 ~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~  147 (575)
                      ...+..+|.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|++++| |
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~-~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYK-GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP-Y   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCH-HHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC-C
T ss_pred             ccCCCCCeECCCCCceeCCH-HHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC-C
Confidence            34567899999999999988 7999999999999999999999999999999999999999998 6

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=2.2e-13  Score=116.35  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCCCcchhhcchhHHHHHhh-hc---CCCCcccccccCccccChhhHHHH-hhhhhCCCCCccccccc
Q psy4272          83 GKATLPSPLKAKLSDYENKMKNVRESIR-QK---RLAQGLTCLQCGRSYCRPYNLKRH-IQYECGKAPQFPCLYCS  153 (575)
Q Consensus        83 ~~~~~p~~C~~C~~~f~~~~~~L~~H~r-~H---~~~kp~~C~~Cgk~F~~~~~L~~H-~r~H~gekp~~~C~~Cg  153 (575)
                      ..+.+||.|.+|++.|... ..|..|++ +|   ++++||.|.+||+.|..+..|.+| +++|+|++| |.|.+|.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~-~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDL-NMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN-FKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCH-HHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC-EEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCH-HHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC-eeCCccc
Confidence            3456677777777777766 57777776 47   456777777777777777777777 677777777 7777643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=3.1e-13  Score=115.41  Aligned_cols=64  Identities=16%  Similarity=0.392  Sum_probs=59.1

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhh-hh---hCCCCCcccccccccccChhhHHHH-HHhhccCcccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQ-YE---CGKAPQFPCLYCSYRARHKHDLKKH-VTFKHAAYLDH  176 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r-~H---~gekp~~~C~~Cgk~F~~~~~L~~H-~r~~H~~~~~~  176 (575)
                      ..+|++||.|.+||+.|..+..|.+|++ +|   +++++ |.|.+||+.|.....|..| +++ |+++++|
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~~Cgk~F~~~~~L~~H~~r~-Htgekpy   80 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKRYDALSEHNLKY-HPGEENF   80 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEETTTTEEESSTHHHHTHHHHT-STTCCCE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHh-cCCCCCe
Confidence            3478999999999999999999999998 59   66899 9999999999999999999 777 8999998

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.34  E-value=1.3e-13  Score=122.36  Aligned_cols=113  Identities=15%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhh---hcCCCCcccccccCcccc------ChhhHHHHhhhhhCCCCCccccc
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIR---QKRLAQGLTCLQCGRSYC------RPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r---~H~~~kp~~C~~Cgk~F~------~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      ..+++.++|.|..++.....   .+..|.+   ....++.|.|.+|++.|.      ....|..|+ .|+++++ |.|.+
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~---s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~-~~C~~   79 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHV---TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ-FVCPL   79 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEEC---CHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS-EECTT
T ss_pred             hhcccccccccccCCeeeee---cHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC-eECCC
Confidence            45667888988776644322   2333322   233457788999887776      666777777 6999999 99999


Q ss_pred             ccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhh
Q psy4272         152 CSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEI  222 (575)
Q Consensus       152 Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~  222 (575)
                      ||+.|.....|..|+++ |  +++|                     .|..|++.|.....|..|+++|.++
T Consensus        80 C~k~f~~~~~l~~H~~~-H--~~~~---------------------~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           80 CLMPFSSSVSLKQHIRY-T--EHTK---------------------VCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TCCEESSHHHHHHHHHH-T--CCCC---------------------BCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCcccCCHhHHHHHHHH-C--CCCC---------------------CCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999 5  6777                     9999999999999999999988654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.31  E-value=1.3e-12  Score=98.39  Aligned_cols=54  Identities=31%  Similarity=0.677  Sum_probs=46.3

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      ||.|.+|++.|.....|..|+++|+++++ |.|.+|++.|.....|..|+++|+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC-EECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC-ccCCCCCchhcCHHHHHHHHHHhcc
Confidence            58888888888888888888888888888 8888888888888888888888443

>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}

Probab=99.30  E-value=1.1e-12  Score=125.27  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=53.9

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChhhhhhcccchhhh
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------------LTERQIKIWFQNRRMK  377 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~V~vWFqNrRak  377 (575)
                      ..++.||.|+.|+..|+.+|+..|..++||+..+|++||..+|                     |++.+|+|||||||++
T Consensus       138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~  217 (221)
T 2h8r_A          138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE  217 (221)
T ss_dssp             ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence            3467899999999999999999999999999999999999988                     8999999999999987


Q ss_pred             h
Q psy4272         378 L  378 (575)
Q Consensus       378 ~  378 (575)
                      .
T Consensus       218 ~  218 (221)
T 2h8r_A          218 E  218 (221)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=2e-12  Score=101.93  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272          82 VGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus        82 ~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      .+...++|.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|+++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSK-AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSH-HHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            45678899999999999988 7999999999999999999999999999999999999999988

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1.5e-12  Score=99.12  Aligned_cols=58  Identities=28%  Similarity=0.598  Sum_probs=50.6

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +||.|.+|++.|.....|.+|+++|+++++ |.|.+|++.|.+...|..|++..|.++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            579999999999999999999999999999 9999999999999999999854476543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1e-12  Score=111.17  Aligned_cols=81  Identities=12%  Similarity=0.062  Sum_probs=71.3

Q ss_pred             CccccChhhHHHHhhhhhCCCCCccccccccccc-ChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhh
Q psy4272         124 GRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRAR-HKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHR  202 (575)
Q Consensus       124 gk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~-~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C  202 (575)
                      ...+.....+.+|+++|+++++ |.|.+|++.|. ....|+.|+++|+..+++|                     .|..|
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~-~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~---------------------~C~~C   60 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGE-AVCPTCNVVTRKTLVGLKKHMEVCQKLQDAL---------------------KCQHC   60 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSC-CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHH---------------------SCSSS
T ss_pred             CCCCCCCCcHHHHHHHhccCCC-cCCCCCCCChhhhHHHHHHHHHHHcCCCCCE---------------------ECCCC
Confidence            3456777788999999999999 99999999999 9999999999955437888                     99999


Q ss_pred             hhhccChhhhHhhhhhhhhhhccc
Q psy4272         203 FREFLNEHRNLERNVSHEEIRTHK  226 (575)
Q Consensus       203 ~k~F~~~~~l~~H~~th~~~~~~~  226 (575)
                      ++.|.....|..|+++|.+.++..
T Consensus        61 ~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           61 RKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCccCCHHHHHHHHHHHcCCCCCC
Confidence            999999999999999998776543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3.5e-12  Score=101.12  Aligned_cols=66  Identities=12%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             CCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272          79 GKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus        79 ~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      +.+++...++|.|.+|++.|... ..|..|+++|.++++|.|.+|++.|.....|.+|+++|+++..
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRS-SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSH-HHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCH-HHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            45567888999999999999988 7999999999999999999999999999999999999998753

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=104.76  Aligned_cols=63  Identities=16%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHh-hhhhCCC
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHI-QYECGKA  144 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~-r~H~gek  144 (575)
                      ..+....+|.|.+|++.|... ..|..|+++|++++||.|.+|++.|.++..|.+|+ ++|++|.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~-~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASK-GAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSH-HHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCEECCCCCCCcCcH-HHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            344567789999999999998 79999999999999999999999999999999997 6798875

>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}

Probab=99.24  E-value=4.6e-12  Score=103.76  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             ccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         328 QVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       328 t~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ..|+..+..+|+.+|..   ++||+..+|++||..+||++.||++||||||.|+++..
T Consensus        10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~   67 (89)
T 2lk2_A           10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM   67 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence            47899999999999987   99999999999999999999999999999999998853

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=4.7e-12  Score=100.44  Aligned_cols=59  Identities=25%  Similarity=0.518  Sum_probs=55.6

Q ss_pred             hhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHh
Q psy4272         109 IRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       109 ~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      ..+|.++++|.|.  .|++.|.....|.+|+++|.++++ |.|.+||+.|.....|..|+++
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTT
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHh
Confidence            3468899999997  599999999999999999999999 9999999999999999999998

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.23  E-value=6.6e-12  Score=94.41  Aligned_cols=56  Identities=14%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ||.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKP-SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSH-HHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCH-HHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999988 799999999999999999999999999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.1e-11  Score=101.64  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhh-cCCCCc--------ccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQ-KRLAQG--------LTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~-H~~~kp--------~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      ...|+|.+|++.|... ..|..|+++ |.++++        |.|.+|++.|.....|.+|+++|+++++ |.|..
T Consensus        23 ~~~~~C~~C~k~f~~~-~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   95 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTM-HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS-GPSSG   95 (95)
T ss_dssp             CSSSSCCCCCCCCSSH-HHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC-CSSCC
T ss_pred             cCCCcccccccccCCH-HHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            4457899999999888 789999998 999888        9999999999999999999999999999 99963

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.18  E-value=1e-11  Score=93.33  Aligned_cols=56  Identities=9%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhC
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      .++|.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+++|++
T Consensus         2 ~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSN-YYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCH-HHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCCh-HHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            5789999999999988 7999999999999999999999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.17  E-value=9.6e-12  Score=89.43  Aligned_cols=45  Identities=18%  Similarity=0.301  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.4e-11  Score=103.92  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=69.2

Q ss_pred             CccccChhhHHHHhhhhhCCCCCcccccccccc-cChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhh
Q psy4272         124 GRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRA-RHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHR  202 (575)
Q Consensus       124 gk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F-~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C  202 (575)
                      ...|.....|..|++.|.++++ |.|.+|++.| .....|+.|+++ | ++++|                     .|.+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~k~F~~~~~~L~~H~~~-h-~~k~~---------------------~C~~C   68 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGS-VSCPTCQAVGRKTIEGLKKHMEN-C-KQEMF---------------------TCHHC   68 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSC-EECTTTCSCEESSHHHHHHHHHH-H-CCCCC---------------------CCSSS
T ss_pred             CCCCCCchHHHHHHHHhcCCCC-cCCCCCCCCcccCHHHHHHHHHH-H-CCCCe---------------------ECCCC
Confidence            4567888899999999999999 9999999999 999999999999 5 88888                     99999


Q ss_pred             hhhccChhhhHhh-hhhhhhh
Q psy4272         203 FREFLNEHRNLER-NVSHEEI  222 (575)
Q Consensus       203 ~k~F~~~~~l~~H-~~th~~~  222 (575)
                      ++.|.....|..| +.+|.+.
T Consensus        69 gk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           69 GKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCeeCCHHHHHHHhHHhcCCC
Confidence            9999999999999 8888754

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.17  E-value=1e-11  Score=89.28  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=89.20  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.4e-13  Score=107.51  Aligned_cols=64  Identities=16%  Similarity=0.235  Sum_probs=46.7

Q ss_pred             HHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         104 NVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       104 ~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|..|+++|.++++|.|.+||+.|.....|..       +++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~-~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~   68 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKT-PMCEKCRKDSCQEAALNKDEGN-ESGKKTS   68 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSS-CCCHHHHHTCSCCCSSCCCSSC-CCCCCCS
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCC-CCCCCCChhhcCHHHHHHHHHh-hcCCCCC
Confidence            45667777777777777777777777777654       566 7777777777777777777777 6666666

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=89.27  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.16  E-value=1e-11  Score=89.20  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.4e-11  Score=88.51  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=89.20  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.16  E-value=1.3e-11  Score=88.80  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.2e-11  Score=88.02  Aligned_cols=44  Identities=14%  Similarity=0.124  Sum_probs=42.5

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      |+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            67899999999999999999999999999999999999 999988

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=89.19  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=89.22  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=89.27  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.16  E-value=9.9e-12  Score=89.21  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=88.89  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=88.95  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=89.01  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=89.01  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=88.51  Aligned_cols=45  Identities=18%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            378899999999999999999999999999999999999 999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=88.83  Aligned_cols=45  Identities=18%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=88.50  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=88.94  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=89.04  Aligned_cols=45  Identities=16%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=88.68  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=88.54  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=89.05  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=88.71  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.5e-11  Score=88.36  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.7e-11  Score=88.15  Aligned_cols=45  Identities=16%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=88.39  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.15  E-value=1.4e-11  Score=88.39  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=88.61  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            488999999999999999999999999999999999999 999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=88.59  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=88.85  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=88.74  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=88.14  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.13  E-value=1.6e-11  Score=88.23  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.3e-11  Score=88.54  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.7e-11  Score=88.03  Aligned_cols=45  Identities=18%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=88.32  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=88.26  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=88.14  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=88.78  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=43.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=87.60  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            378899999999999999999999999999999999999 999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.1e-11  Score=87.56  Aligned_cols=45  Identities=16%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2e-11  Score=87.71  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999988

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=3.8e-11  Score=91.22  Aligned_cols=57  Identities=16%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             CCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHh-hhhhCCC
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHI-QYECGKA  144 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~-r~H~gek  144 (575)
                      +||.|.+|++.|... ..|..|+++|+++++|.|.+|++.|.....|.+|+ ++|+++.
T Consensus         1 k~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQ-EHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCH-HHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCH-HHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            479999999999988 79999999999999999999999999999999996 7898764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.1e-11  Score=97.00  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             CCCCCCCCCCCCcchhhcchhHHHHHhhhcCC---CCcccccccCccccChhhHHHHh-hhhhCCCCCcccc
Q psy4272          83 GKATLPSPLKAKLSDYENKMKNVRESIRQKRL---AQGLTCLQCGRSYCRPYNLKRHI-QYECGKAPQFPCL  150 (575)
Q Consensus        83 ~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~---~kp~~C~~Cgk~F~~~~~L~~H~-r~H~gekp~~~C~  150 (575)
                      +++.++|.|.+|++.|... ..|..|+++|++   +++|.|.+|++.|.....|.+|+ +.|.++++ ....
T Consensus         2 h~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~-~~~~   71 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQK-ASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL-APQE   71 (78)
T ss_dssp             CCSCCCEECSSSCCEESSH-HHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS-CCSS
T ss_pred             CCCCcCeECCCCCCeeCCH-HHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC-Cccc
Confidence            5678999999999999988 799999999996   89999999999999999999999 56888877 5544

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=88.03  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=43.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            478999999999999999999999999999999999999 999988

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=3.8e-11  Score=89.60  Aligned_cols=47  Identities=21%  Similarity=0.522  Sum_probs=44.1

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhh-hhhCCCCCcccccccccccC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQ-YECGKAPQFPCLYCSYRARH  158 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~~C~~Cgk~F~~  158 (575)
                      .|+++++|.|.+|++.|.....|.+|++ +|+++++ |.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC-ccCCCCCCCCCC
Confidence            5788999999999999999999999997 8999999 999999999976

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3e-11  Score=94.06  Aligned_cols=57  Identities=18%  Similarity=0.396  Sum_probs=47.4

Q ss_pred             cCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc-cccccccChhhHHHHHHhhccC
Q psy4272         112 KRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL-YCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       112 H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~-~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      +.++++|.|.+|++.|. ...|..|+++ +++++ |.|. .||+.|..+..|..|+++ |..
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p-~~C~~~C~k~f~~~~~L~~H~~~-hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP-VACPNQCGVGTVAREDLPGHLKD-SCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE-EECTTCCSCCEEETTTHHHHHHT-TSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC-ccCCcccCcccccHHHHHHHHHh-hcc
Confidence            34678888888888888 8888888888 88888 8888 888888888888888887 543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=8.3e-11  Score=94.29  Aligned_cols=69  Identities=12%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhh-hcCCC-CcccccccCccccChhhHHHHhhhhhC-CCC
Q psy4272          76 QRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIR-QKRLA-QGLTCLQCGRSYCRPYNLKRHIQYECG-KAP  145 (575)
Q Consensus        76 ~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r-~H~~~-kp~~C~~Cgk~F~~~~~L~~H~r~H~g-ekp  145 (575)
                      +..|...+.+.+||.|.+|++.|... ..|..|++ .|.++ ++|.|.+|++.|.....|.+|+++|.+ +.|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQS-GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCH-HHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCH-HHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            45677888999999999999999988 79999997 78875 899999999999999999999998554 444

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.5e-11  Score=86.65  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=43.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhh-hhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQ-YECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|++ +|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            47899999999999999999999999999999 9999999 999988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.4e-11  Score=86.49  Aligned_cols=45  Identities=18%  Similarity=0.339  Sum_probs=42.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            478899999999999999999999999999999999999 999876

>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A

Probab=99.07  E-value=2.7e-11  Score=128.83  Aligned_cols=57  Identities=30%  Similarity=0.475  Sum_probs=54.4

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      .++.|+.|+..|+..|++.|..++||+..+|++||.++||+++||+|||||||+|+|
T Consensus       365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~  421 (421)
T 1mh3_A          365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK  421 (421)
T ss_dssp             HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred             hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence            456788999999999999999999999999999999999999999999999999986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.3e-12  Score=99.66  Aligned_cols=70  Identities=11%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             hccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272          74 LSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus        74 ~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      ..+..|...+.+..+|.|.+|++.|... ..|..       +++|.|.+||+.|.....|.+|+++|+++++ |.|.+|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~-~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~-~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRR-STLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT-SGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECC-CCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC-SSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCH-HHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC-CCCCCC
Confidence            3456777888899999999999999887 34443       7899999999999999999999999999999 999988

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=6.4e-11  Score=93.58  Aligned_cols=57  Identities=26%  Similarity=0.648  Sum_probs=49.8

Q ss_pred             hcCCCCcccccc--cCccccChhhHHHHhhhhhCCCCCccccc--ccccccChhhHHHHHHh
Q psy4272         111 QKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKHVTF  168 (575)
Q Consensus       111 ~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~  168 (575)
                      .+...++|.|.+  |++.|.....|.+|+++|+++++ |.|.+  |++.|.....|..|+++
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhc
Confidence            455678899988  99999999999999999999999 99965  99999999999999876

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=3.6e-11  Score=93.24  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             hhhhhCCCCCcccccccccccChhhHHHHHHhhc-cCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhh
Q psy4272         137 IQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKH-AAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLER  215 (575)
Q Consensus       137 ~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H-~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H  215 (575)
                      +++|+|+++ |.|.+|++.|.....|..|++++| .++++|                     .|..|++.|.....|..|
T Consensus         2 ~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~---------------------~C~~C~k~f~~~~~L~~H   59 (66)
T 2drp_A            2 EFTKEGEHT-YRCKVCSRVYTHISNFCRHYVTSHKRNVKVY---------------------PCPFCFKEFTRKDNMTAH   59 (66)
T ss_dssp             -CEEEETTE-EECTTTCCEESSHHHHHHHHHHHSSSSCCCE---------------------ECTTTCCEESCHHHHHHH
T ss_pred             ccccCCCcc-eECCCCcchhCCHHHHHHHHHHHcCCCCcCe---------------------ECCCCCCccCCHHHHHHH
Confidence            467999999 999999999999999999999866 688888                     999999999999999999


Q ss_pred             hhhhhh
Q psy4272         216 NVSHEE  221 (575)
Q Consensus       216 ~~th~~  221 (575)
                      +.+|.+
T Consensus        60 ~~~~H~   65 (66)
T 2drp_A           60 VKIIHK   65 (66)
T ss_dssp             HHHHTC
T ss_pred             HHHHcC
Confidence            988754

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.06  E-value=1e-11  Score=95.77  Aligned_cols=55  Identities=11%  Similarity=0.335  Sum_probs=49.5

Q ss_pred             HHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHH
Q psy4272         105 VRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLK  163 (575)
Q Consensus       105 L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~  163 (575)
                      |..|+++|++++||.|.+||+.|.....|.   ++|+++++ |.|.+||+.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~-~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT-FRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE-EBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCC-EECCCCCCccccCcccc
Confidence            346889999999999999999999998886   88999999 99999999999887654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.04  E-value=6.6e-11  Score=84.96  Aligned_cols=44  Identities=20%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS-SSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=8.2e-11  Score=84.40  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7.9e-11  Score=84.56  Aligned_cols=44  Identities=18%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC-CCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.5e-11  Score=84.59  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            478999999999999999999999999999999999999 99974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.1e-11  Score=84.08  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.9e-11  Score=84.02  Aligned_cols=44  Identities=18%  Similarity=0.319  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.03  E-value=8.8e-11  Score=82.41  Aligned_cols=42  Identities=17%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      |+++|+++++|.|.+|++.|.+...|.+|+++|+++++ |.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            67899999999999999999999999999999999999 9985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.6e-11  Score=84.10  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      .+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            35789999999999999999999999999999999999 999988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=8.3e-11  Score=84.36  Aligned_cols=44  Identities=18%  Similarity=0.153  Sum_probs=41.7

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      ++++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            46789999999999999999999999999999999999 999988

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-10  Score=81.94  Aligned_cols=42  Identities=12%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG-PSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS-CCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            67899999999999999999999999999999999999 9984

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.5e-11  Score=84.66  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.5e-11  Score=84.32  Aligned_cols=44  Identities=20%  Similarity=0.307  Sum_probs=41.5

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.2e-10  Score=83.09  Aligned_cols=43  Identities=14%  Similarity=0.208  Sum_probs=41.0

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccccc
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCS  153 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cg  153 (575)
                      .+|+++++|.|.+|++.|..+..|.+|+++|+++++ |.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            468999999999999999999999999999999999 9999997

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1e-10  Score=83.83  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.7e-11  Score=84.17  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            478999999999999999999999999999999999999 99974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=83.79  Aligned_cols=44  Identities=16%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.3e-11  Score=84.29  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.9e-11  Score=84.19  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=83.68  Aligned_cols=44  Identities=18%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC-SSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=83.86  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=41.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCCC
Confidence            378899999999999999999999999999999999999 99974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=9.4e-11  Score=84.07  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=83.63  Aligned_cols=44  Identities=18%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            488999999999999999999999999999999999999 99974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1e-10  Score=83.94  Aligned_cols=44  Identities=18%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.2e-11  Score=84.06  Aligned_cols=44  Identities=18%  Similarity=0.235  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99974

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=1.4e-10  Score=91.79  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             CCCCCCCCCCCCC--CCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhh
Q psy4272          80 KPVGKATLPSPLK--AKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus        80 ~~~~~~~~p~~C~--~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      ...+...++|.|.  .|++.|... ..|..|+++|.++++|.|.+||+.|.....|.+|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCH-HHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3456678899997  599999988 799999999999999999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.8e-11  Score=84.04  Aligned_cols=44  Identities=14%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1e-10  Score=83.86  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            478999999999999999999999999999999999999 99974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.1e-10  Score=82.68  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            478899999999999999999999999999999999999 9985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=1.5e-10  Score=83.99  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSY  154 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk  154 (575)
                      .|.++++|.|.+|++.|.....|.+|+++|+++++ |.|.+|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            47788999999999999999999999999999999 99999986

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=83.26  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            378899999999999999999999999999999999999 9996

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=83.62  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99973

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=82.54  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=40.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG-PSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS-CCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            488999999999999999999999999999999999999 9995

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=82.28  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=40.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            478899999999999999999999999999999999999 9985

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=81.86  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=39.8

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      .|+++|+++++|.|.+||+.|.....|.+|+++|+++++ |.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            378899999999999999999999999999999999999 988

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.3e-10  Score=89.00  Aligned_cols=59  Identities=17%  Similarity=0.266  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCccccc-ccCccccChhhHHHHhhhhhCCCC
Q psy4272          84 KATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCL-QCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus        84 ~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~-~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      -+.+||.|.+|++.|. . ..|..|+++ ++++||.|. +||+.|..+..|..|+++|...++
T Consensus         6 C~~~~~~C~~C~k~f~-~-~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-F-DTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-H-HHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-H-HHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4567899999999999 5 899999999 999999999 999999999999999999987765

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=81.26  Aligned_cols=41  Identities=20%  Similarity=0.386  Sum_probs=39.5

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            78899999999999999999999999999999999999 998

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=83.26  Aligned_cols=44  Identities=16%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            478999999999999999999999999999999999999 99973

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=82.58  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            377899999999999999999999999999999999999 99963

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.4e-10  Score=82.31  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=40.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      +|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            588899999999999999999999999999999999999 9984

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.8e-10  Score=80.84  Aligned_cols=41  Identities=22%  Similarity=0.373  Sum_probs=39.3

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            78899999999999999999999999999999999999 988

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.7e-10  Score=81.81  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+++++ |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            588999999999999999999999999999999999999 9995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.7e-10  Score=82.83  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhC-CCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECG-KAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g-ekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|++ +++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~-~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS-GPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT-SSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC-CCCCC
Confidence            478899999999999999999999999999999999 999 99974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.97  E-value=2.2e-10  Score=80.31  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            77899999999999999999999999999999999999 998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.5e-10  Score=82.91  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=41.1

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            588999999999999999999999999999999999999 9996

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.7e-10  Score=82.57  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=41.4

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 99963

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.2e-10  Score=80.48  Aligned_cols=42  Identities=17%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            67899999999999999999999999999999999999 9995

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=7.4e-10  Score=92.16  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             CcccccccCccccChhhHHHHhhh-hhCCCCC-------cccccccccccChhhHHHHHHhhccCcccc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQY-ECGKAPQ-------FPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~-H~gekp~-------~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ..|.|.+|++.|.....|.+|+++ |+++++.       |.|.+|++.|.....|..|+++ |.++++|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   91 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKSG   91 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH-HHTCCCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh-cCCCCCC
Confidence            347899999999999999999998 9887642       7999999999999999999999 8888888

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.9e-10  Score=80.80  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=40.2

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG-PSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC-CCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC-CCCC
Confidence            478999999999999999999999999999999999999 9873

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.7e-10  Score=81.81  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=40.7

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      .|+++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC-CSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            578999999999999999999999999999999999999 9984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4.5e-10  Score=80.59  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=40.1

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      ++++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCCC
Confidence            36789999999999999999999999999999999999 99974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.6e-10  Score=81.59  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=41.7

Q ss_pred             HhhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCcccccc
Q psy4272         108 SIRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYC  152 (575)
Q Consensus       108 H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~C  152 (575)
                      |.++|+++++|.|.  +|++.|.....|.+|+++|+++++ |+|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            56789999999998  899999999999999999999999 999988

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4e-10  Score=80.36  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      +.++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            45789999999999999999999999999999999999 99974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=9.1e-10  Score=77.78  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      ++|+++++|.|.+|++.|.....|.+|+++|+++++ |.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCCC
Confidence            578999999999999999999999999999999999 99974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.89  E-value=1e-09  Score=86.48  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCCCC--CcchhhcchhHHHHHhhhcCCCCcccccc--cCccccChhhHHHHhhhh
Q psy4272          81 PVGKATLPSPLKA--KLSDYENKMKNVRESIRQKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus        81 ~~~~~~~p~~C~~--C~~~f~~~~~~L~~H~r~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H  140 (575)
                      ......++|.|..  |++.|... ..|..|+++|+++++|.|.+  |++.|.....|.+|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKS-SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSH-HHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCH-HHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445578899998  99999988 79999999999999999975  999999999999999886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.89  E-value=3e-10  Score=84.59  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=27.3

Q ss_pred             hHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         103 KNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      ..|..|+++|+++++|.|.+||+.|.....|.+|+++|+|+++
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            3455566666666666666666666666666666666666665

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-09  Score=75.95  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=37.1

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++ |.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            578999999999999999999999999999999999 988

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.81  E-value=8.3e-10  Score=82.18  Aligned_cols=51  Identities=14%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             CccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         124 GRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       124 gk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|.|.....|..|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP-ATCPICYAVIRQSRNLRRHLEL-RHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC-EECTTTCCEESSHHHHHHHHHH-HTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCC-ccCCCCCcccCCHHHHHHHHHH-hccCCCC
Confidence            5789999999999999999999 9999999999999999999999 7777765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.8e-10  Score=90.52  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=58.5

Q ss_pred             hHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         103 KNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ..|..|+++|.++++|.|.+|++.|. ...|..|+ .|.++++ |.|..|++.|.+ ..|..|+++ |.++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~-~~C~~C~~~~~~-~~l~~H~~~-c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART-ELCGNCGRNVLV-KDLKTHPEV-CGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE-EECSSSCCEEET-TGGGTHHHH-BTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc-eEcccCCCcCcH-HHHHHHHHH-ccCC
Confidence            35678999999999999999999994 88999999 8999999 999999999884 899999998 5554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.76  E-value=1.6e-09  Score=77.51  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emk_A            2 SSGSSGTGEKP-YECKECGKAFSQTTHLIQHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSSSCS-CBCSSSCCBCSCHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCccCCCCc-eECCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.8e-09  Score=77.16  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eq4_A            2 SSGSSGTGEKL-YNCKECGKSFSRAPCLLKHERL-HSGEKPS   41 (46)
T ss_dssp             CCCCCSSCCCC-CCBTTTTBCCSCHHHHHHHHHH-CCSSSCC
T ss_pred             CCcccCCCCCC-eECCCCCCccCchHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=5.3e-09  Score=77.77  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhh-hcCCCCcccccccCccccC
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIR-QKRLAQGLTCLQCGRSYCR  129 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r-~H~~~kp~~C~~Cgk~F~~  129 (575)
                      ..+...++|.|.+|++.|... ..|..|++ +|+++++|.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~-~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRP-DHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSH-HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCH-HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            345678899999999999988 79999997 9999999999999999976

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.74  E-value=1.7e-09  Score=77.33  Aligned_cols=40  Identities=15%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em0_A            2 SSGSSGMGEKT-WKCRECDMCFSQASSLRLHQNV-HVGEKPS   41 (46)
T ss_dssp             CCCCCSCCCCC-CCCSSSCCCCSSHHHHHHHGGG-GSSSSCS
T ss_pred             CCcCccCCCcC-eECCCCCcccCCHHHHHHHHHH-cCCCCCc
Confidence            58899999999 9999999999999999999999 8888888

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.2e-09  Score=78.25  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eoo_A            2 SSGSSGSGERP-YGCNECGKNFGRHSHLIEHLKR-HFREKSS   41 (46)
T ss_dssp             CCCCCCSCCCC-EECSSSCCEESSHHHHHHHHHH-HHSTTSS
T ss_pred             CCCCCCCCCCC-EEccccCcccCCHHHHHHHHHH-HcCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.1e-09  Score=76.78  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eov_A            2 SSGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKC-HTGERHS   41 (46)
T ss_dssp             CCCCCCSSCCS-CBCSSSCCBCSSHHHHHHHHHH-HSCCSSC
T ss_pred             CCCCCCCCCCC-ccCCccChhhCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888888

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.7e-09  Score=77.42  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=37.8

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytj_A            2 SSGSSGTGEKP-YICAECGKAFTIRSNLIKHQKI-HTKQKPS   41 (46)
T ss_dssp             CSSCTTSSCCS-EECSSSCCEESSHHHHHHHHHH-TSCCCCS
T ss_pred             CcccCCCCCcC-eECCCCChhhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.74  E-value=2.8e-09  Score=76.29  Aligned_cols=40  Identities=20%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ely_A            2 SSGSSGTGEKP-FKCVECGKGFSRRSALNVHHKL-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCS-BCCSSSCCCBSSTTHHHHHHHH-HSCCSSC
T ss_pred             CCCCCCCCCCC-cccCccCcccCCHHHHHHHHHH-cCCCCCC
Confidence            37899999999 9999999999999999999999 8888888

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.7e-09  Score=77.39  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eml_A            2 SSGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRI-HSGKKPS   41 (46)
T ss_dssp             CCCCCCSSCCS-EECSSSCCEESSHHHHHHHHGG-GSSCCCS
T ss_pred             CccCCcCCCCC-eeCCCcCCccCCHHHHHHHHHH-hcCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A

Probab=98.73  E-value=7.4e-10  Score=74.89  Aligned_cols=21  Identities=67%  Similarity=0.977  Sum_probs=18.2

Q ss_pred             hhhhhcccchhhhhhhcCCcc
Q psy4272         365 RQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       365 ~~V~vWFqNrRak~kk~~~~~  385 (575)
                      +||+||||||||||||.....
T Consensus         1 rQVkIWFQNRRaK~Kk~~~~~   21 (37)
T 2nzz_A            1 RQIKIWFQNRRMKWKKRVFND   21 (37)
T ss_dssp             CCTTTTTTCSHHHHTSSHHHH
T ss_pred             CCceeccHHHHHHHHHHhHHH
Confidence            589999999999999977653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=76.92  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eop_A            2 SSGSSGTGEKP-HECRECGKSFSFNSQLIVHQRI-HTGENPS   41 (46)
T ss_dssp             CCCCSCCCCCS-CBCTTTCCBCSSHHHHHHHHTT-TTTSCCS
T ss_pred             CCccccCCCCC-eeCCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.8e-09  Score=77.17  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emm_A            2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCS-EECSSSCCEESSHHHHHHHHHH-HSCCCTT
T ss_pred             CCcCCcCCCCC-eeCCCCChhhCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999999 8888888

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.2e-09  Score=76.70  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytr_A            2 SSGSSGTGEKP-YKCNECGKAFSQTSKLARHQRI-HTGEKPS   41 (46)
T ss_dssp             CSSCCCSSCCT-TCCTTTCCCCSSHHHHHHHHTT-TTTCSCC
T ss_pred             CCCcCCCCCcC-cCCCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=2.4e-09  Score=75.74  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   39 (44)
T 2emx_A            1 GSSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQT-HAEEKPS   39 (44)
T ss_dssp             CCCCCSSCCC-EECSSSSCEESSHHHHHHHHHH-HTSSCSC
T ss_pred             CCCCcCCCcC-ccCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            7889999999 9999999999999999999999 7888888

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.72  E-value=1.9e-09  Score=77.04  Aligned_cols=40  Identities=15%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ema_A            2 SSGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKI-HTGEKPS   41 (46)
T ss_dssp             CSCSSCTTSCC-EECSSSCCEESSHHHHHHHHTG-GGCCCCC
T ss_pred             CCccCCCCCcC-cCCCCCcchhCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2e-09  Score=76.95  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytn_A            2 SSGSSGTGKKP-YKCNECGKVFTQNSHLARHRGI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCSS-CBCTTTCCBCSSHHHHHHHGGG-TSCCCCC
T ss_pred             CCCcCCCCCcC-eECCCCCCeeCCHHHHHHHhhh-cCCCCCC
Confidence            48899999999 9999999999999999999998 8888888

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2e-09  Score=76.93  Aligned_cols=40  Identities=18%  Similarity=0.315  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eoe_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANHQRI-HTGVKPS   41 (46)
T ss_dssp             CCSSCCCCCCS-SEETTTTEECSSHHHHHHHHGG-GSCCCSC
T ss_pred             CCCCCCCCCCC-eECCCcChhhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.9e-09  Score=77.10  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emy_A            2 SSGSSGTGENP-YECHECGKAFSRKYQLISHQRT-HAGEKPS   41 (46)
T ss_dssp             CCCCCCCSSCC-EECSSSCCEESSHHHHHHHHHH-HTTSCCS
T ss_pred             CCCCCCCCCcC-cCCCCCCcccCcHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.1e-09  Score=75.98  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2epz_A            2 SSGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCCCCS-BCCTTTCCCBSSHHHHHHHHTT-TTTCCCC
T ss_pred             CCCCCcCCCCC-eECCCCCceeCCHHHHHHHHHH-hCCCCCC
Confidence            37899999999 9999999999999999999998 7888888

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.7e-09  Score=75.58  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eoq_A            2 SSGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMV-HTAEKPS   41 (46)
T ss_dssp             CCCCCSSSSCS-CCCSSSCCCCSSHHHHHHHHHH-TTCCCSS
T ss_pred             CCCCCCCCCCC-cCCCcCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2e-09  Score=76.92  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eme_A            2 SSGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCTTCCCCS-EECSSSCCEESSHHHHHHHHGG-GCCCSCC
T ss_pred             CCCCCCCCCCC-eECCCCChhhCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.1e-09  Score=76.02  Aligned_cols=40  Identities=15%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2elz_A            2 SSGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRV-HMGEKTS   41 (46)
T ss_dssp             CCCSCCCCCSS-CBCSSSCCBCSSHHHHHHHGGG-GGSCCCC
T ss_pred             CCCCCCCCCCC-eeCcccCchhCCHHHHHHHHHh-cCCCCCC
Confidence            37889999999 9999999999999999999998 7888888

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.71  E-value=1.9e-09  Score=77.04  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2el4_A            2 SSGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRS-HTGVKPS   41 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSSCEESSHHHHHHHGGG-SSSCCCS
T ss_pred             ccccCCCCCCc-eECCCCCchhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.3e-09  Score=75.86  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytq_A            2 SSGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRT-HSGEKPS   41 (46)
T ss_dssp             CCSSCSSCCCS-CBCSSSCCBCSCHHHHHHHHTT-TCCSCSS
T ss_pred             CCCcCcCCCCC-cCCCccChhhCChHHHHHHHHH-hCCCCCC
Confidence            37889999999 9999999999999999999999 8888888

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.9e-09  Score=77.12  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emh_A            2 SSGSSGTGERP-YICTVCGKAFTDRSNLIKHQKI-HTGEKPS   41 (46)
T ss_dssp             CCCCSCSCCCS-EECTTTCCEESSHHHHHHHHHH-HHCSSCS
T ss_pred             CCCCCCCCCCC-cCCCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999998 7788888

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.9e-09  Score=77.07  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emp_A            2 SSGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVI-HTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCS-EECSSSCCEESCHHHHHHHHHH-HHCCSCC
T ss_pred             CcccccCCCcC-eECCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.3e-09  Score=76.62  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytk_A            2 SSGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCSSSSCS-EECSSSCCEESSHHHHHHHHHH-HSSSSCS
T ss_pred             CCcccCCCCCC-EeCCcCCCccCCHHHHHHHHHH-HCCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.9e-09  Score=75.56  Aligned_cols=39  Identities=15%  Similarity=0.339  Sum_probs=36.9

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytm_A            3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRL-HTGQRPS   41 (46)
T ss_dssp             SCCCCSSCCS-SSBTTTTBCCSSHHHHHHHHHH-HHSCCCC
T ss_pred             CCcCCCCCCC-cCCCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            7889999999 9999999999999999999999 7888888

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.7e-09  Score=76.37  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emf_A            2 SSGSSGTGGKH-FECTECGKAFTRKSTLSMHQKI-HTGEKPS   41 (46)
T ss_dssp             CCCSSSSSSCC-EECSSSCCEESCHHHHHHHGGG-TSCSSCS
T ss_pred             ccccccCCCCC-eECCCCCchhCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999999 7888888

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.8e-09  Score=77.32  Aligned_cols=40  Identities=15%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em5_A            2 SSGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCS-EECSSSCCEESSHHHHHHHHTT-TSCSCCS
T ss_pred             CCcCCCCCCCC-eECCcCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.8e-09  Score=76.23  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ene_A            2 SSGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCCSSS-EECSSSCCEESSHHHHHHHHTT-TCCCCCC
T ss_pred             CcccCCCCCCC-eECCCCCchhCChHHHHHHHhh-cCCCCCC
Confidence            48899999999 9999999999999999999999 8888888

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.2e-09  Score=76.67  Aligned_cols=40  Identities=15%  Similarity=0.108  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en8_A            2 SSGSSGSGEKS-HTCDECGKNFCYISALRIHQRV-HMGEKCS   41 (46)
T ss_dssp             CCCCCCCCCSS-EECTTTCCEESSHHHHHHHHTT-TCCSCSS
T ss_pred             CccccCCCCCC-eECCCcCcccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.8e-09  Score=75.50  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ep2_A            2 SSGSSGTGEKP-YECSICGKSFTKKSQLHVHQQI-HTGEKPS   41 (46)
T ss_dssp             CSSSCSSCCCS-EECSSSCCEESSHHHHHHHHHT-TSSCCSC
T ss_pred             CCCCCCCCCcC-cCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.4e-09  Score=75.72  Aligned_cols=40  Identities=20%  Similarity=0.353  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eq0_A            2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLI-HTGEKPS   41 (46)
T ss_dssp             CCCCCTTCCCC-EECTTTCCEESSHHHHHHHHTT-TCCCCCS
T ss_pred             CCCcCCCCCCC-eECCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            48899999999 9999999999999999999999 8888888

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.6e-09  Score=75.56  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2epw_A            2 SSGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRT-HVDDKHS   41 (46)
T ss_dssp             CCCCCCCCCCS-EECSSSCCEESSSHHHHHHHHH-CCSCCCS
T ss_pred             cCcccCCCCCC-eeCCCCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 8888888

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=3.2e-09  Score=75.90  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em7_A            2 SSGSSGTGEKP-YKCEECGKGFICRRDLYTHHMV-HTGEKPS   41 (46)
T ss_dssp             CCCCSSSCCCS-EECSSSCCEESCHHHHHHHGGG-GTTCCCS
T ss_pred             CCCCCCCCCcC-ccCCCccchhCCHHHHHHHHHH-hCCCCCC
Confidence            37889999999 9999999999999999999999 8888888

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.9e-09  Score=77.09  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2yu8_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARHRRV-HTGGKPS   41 (46)
T ss_dssp             CCCCCCCCCSS-EECSSSCCEESSSHHHHHHTHH-HHSCCCS
T ss_pred             CcCcCCCCCCC-eECCcCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888888

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=2.1e-09  Score=76.88  Aligned_cols=40  Identities=23%  Similarity=0.379  Sum_probs=37.7

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2en1_A            2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRV-HTGEKPS   41 (46)
T ss_dssp             CSTTCCCCCCS-EEETTTTEEESSHHHHHHHGGG-GSCCCCS
T ss_pred             CcccCCCCCCC-eeCCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888888

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.68  E-value=3.5e-09  Score=75.61  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em9_A            2 SSGSSGTGEKP-YNCKECGKSFRWASCLLKHQRV-HSGEKPS   41 (46)
T ss_dssp             CSCCSCCCCCS-EECSSSCCEESSHHHHHHHGGG-GTSCCCC
T ss_pred             CCCCCCCCCcC-eECCccccccCChHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999998 8888888

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3.9e-09  Score=75.46  Aligned_cols=40  Identities=20%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytd_A            2 SSGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRI-HTGYRPS   41 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSCCEESSHHHHHHHHHH-HTCCCSS
T ss_pred             CCccccCCCcC-eECCCCCCeeCChHHHHHHHHH-cCCCCCC
Confidence            48899999999 9999999999999999999999 8888888

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=2.7e-09  Score=76.30  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en6_A            2 SSGSSGSGEKP-YGCNECGKTFSQKSILSAHQRT-HTGEKPS   41 (46)
T ss_dssp             CCSCCCCSSCC-EEETTTTEEESSHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCccCCCcC-eECCCCCcccCchHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888888

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=4.3e-09  Score=75.21  Aligned_cols=40  Identities=18%  Similarity=0.218  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2enc_A            2 SSGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRS-HSGEKPS   41 (46)
T ss_dssp             CCSSCCCCCCS-EECSSSCCEESSHHHHHHHHHH-SCCSSCC
T ss_pred             CCCCCCCCCCC-cCCCCCCCcCCChHHHHHHHHH-hCCCCCC
Confidence            37889999999 9999999999999999999999 8888888

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3e-09  Score=76.05  Aligned_cols=40  Identities=18%  Similarity=0.322  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ep3_A            2 SSGSSGTGEKP-YRCAECGKAFTDRSNLFTHQKI-HTGEKPS   41 (46)
T ss_dssp             CCCSSSSCCCS-EECSSSCCEESSHHHHHHHHTT-TTTSCCC
T ss_pred             CCCCCCCCCCC-eECCCCCchhCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888888

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=4.4e-09  Score=75.13  Aligned_cols=40  Identities=13%  Similarity=0.100  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yso_A            2 SSGSSGSREKS-HQCRECGEIFFQYVSLIEHQVL-HMGQKNS   41 (46)
T ss_dssp             CCSCCSSCCCC-EECTTTCCEESSHHHHHHHHHH-HSCCSCC
T ss_pred             CcccccCCCCC-EEccccChhhCCHHHHHHHHHH-hCCCCCC
Confidence            47899999999 9999999999999999999999 8888888

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8e-09  Score=69.96  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             hhhcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         109 IRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       109 ~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      +++|+++++|.|.+|++.|.....|.+|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3578888888888888888888888888888888765

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5e-09  Score=75.07  Aligned_cols=40  Identities=20%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHH-hhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVT-FKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r-~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+||+.|.....|..|++ + |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~-H~~~k~~   42 (47)
T 2epx_A            2 SSGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYY-HTGEKPS   42 (47)
T ss_dssp             CCCCCCCCCCS-BCCSSSCCCBSSHHHHHHHHTTT-TTTSCSS
T ss_pred             ccccccCCCCC-EECCccCchhCChHHHHHHhHhh-cCCCCCC
Confidence            47899999999 999999999999999999999 7 8888888

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.67  E-value=1e-08  Score=70.53  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=33.8

Q ss_pred             cCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccc
Q psy4272         112 KRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCL  150 (575)
Q Consensus       112 H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~  150 (575)
                      |+++++|.|.+||+.|.....|..|+++|+++++ |.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA-RLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT-TTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcc-ceec
Confidence            6788999999999999999999999999999999 8763

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.66  E-value=5e-09  Score=74.93  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2el6_A            2 SSGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRM-HTREKPS   41 (46)
T ss_dssp             CSCCSSCCCCS-EECSSSSCEESSHHHHHHHHGG-GCCSSCC
T ss_pred             CCCCCCCCCCC-eECCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            47899999999 9999999999999999999999 8888888

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3.6e-09  Score=75.64  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ysp_A            2 SSGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKV-HTGERPS   41 (46)
T ss_dssp             CCCCCCSSCCS-EEETTTTEEESCHHHHHHHHTT-SCSCCSS
T ss_pred             CCCcCCCCCCC-eECCCCCCccCCHHHHHHHHHh-hCCCCCC
Confidence            37899999999 9999999999999999999999 8888888

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=2.2e-09  Score=76.79  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytg_A            2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCS-EECTTTCCEESSSHHHHTTGGG-GSSCCSS
T ss_pred             CCCCCCCCCCC-eECCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 8888888

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.65  E-value=1.1e-08  Score=69.21  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |+++|+++++|.|.+|++.|.....|.+|+++|+|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566777777777777777777777777777777664

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=5e-09  Score=74.93  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em8_A            2 SSGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRV-HTGEKLS   41 (46)
T ss_dssp             CCCCCCCSCCS-EECSSSCCEESSHHHHHHHHHH-HHCCCCC
T ss_pred             CCCCCCCCCCC-eECcccCchhCCHHHHHHHHHH-HcCCCCC
Confidence            37889999999 9999999999999999999999 7888888

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=1.8e-08  Score=72.78  Aligned_cols=44  Identities=2%  Similarity=-0.074  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCc
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGR  125 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk  125 (575)
                      ..+...++|.|.+|++.|... ..|..|+++|+++++|.|.+|+|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDV-YHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSH-HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCH-HHHHHHHHhcCCCCCccCCCCCC
Confidence            345668899999999999988 79999999999999999999996

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.62  E-value=8.7e-10  Score=84.76  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             HHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhh
Q psy4272         133 LKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRN  212 (575)
Q Consensus       133 L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l  212 (575)
                      |..|+++|+|+++ |.|.+||+.|.....|.   ++ |.++++|                     .|..|++.|.....+
T Consensus         2 L~~h~~~H~~~k~-~~C~~C~k~F~~~~~l~---~~-H~~~k~~---------------------~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRAS-FKCPVCSSTFTDLEANQ---LF-DPMTGTF---------------------RCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSE-EECSSSCCEEEHHHHHH---HE-ETTTTEE---------------------BCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCC-ccCCCCCchhccHHHhH---hh-cCCCCCE---------------------ECCCCCCccccCccc
Confidence            5678999999999 99999999999988886   56 8888988                     999999999887765


Q ss_pred             Hhh
Q psy4272         213 LER  215 (575)
Q Consensus       213 ~~H  215 (575)
                      ..+
T Consensus        56 ~~~   58 (62)
T 1vd4_A           56 MPK   58 (62)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=7.8e-09  Score=73.89  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em2_A            2 SSGSSGSGEKP-FKCKECGKAFRQNIHLASHLRI-HTGEKPS   41 (46)
T ss_dssp             CCCCSCCCCCS-EECSSSCCEESSHHHHHHHHHH-HCCCCSS
T ss_pred             CCCCCCCCCCC-EECCcCCchhCCHHHHHHHHHH-hCCCCCC
Confidence            47899999999 9999999999999999999999 7888888

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=2.4e-08  Score=77.62  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             hcCCCCcccccc--cCccccChhhHHHHh-hhhhCCCCCccccc
Q psy4272         111 QKRLAQGLTCLQ--CGRSYCRPYNLKRHI-QYECGKAPQFPCLY  151 (575)
Q Consensus       111 ~H~~~kp~~C~~--Cgk~F~~~~~L~~H~-r~H~gekp~~~C~~  151 (575)
                      .++|+|||+|.+  |+|.|.+..+|.+|+ ++|+++|| |-|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-ccccc
Confidence            367899999975  999999999999997 68999999 98854

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.8e-08  Score=70.24  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   39 (42)
T 2yte_A            1 GSSGSSGEKP-YSCAECKETFSDNNRLVQHQKM-HTVKSGP   39 (42)
T ss_dssp             CCSSSCSCCS-CBCTTTCCBCSSHHHHHHHHHH-TSCCSSC
T ss_pred             CCcCcCCCCC-eECCCCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            6789999999 9999999999999999999999 8888877

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.58  E-value=1.4e-08  Score=70.91  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=36.5

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   39 (42)
T 2el5_A            1 GSSGSSGENP-YECSECGKAFNRKDQLISHQRT-HAGESGP   39 (42)
T ss_dssp             CCSSSSSCCS-EECSSSCCEESSHHHHHHHHGG-GCCCCSC
T ss_pred             CCCCCCCCCC-ccCCCcChhhCCHHHHHHHHHh-cCCCCCC
Confidence            6789999999 9999999999999999999999 7888877

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.4e-08  Score=72.44  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ep1_A            2 SSGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRI-HTGENPS   41 (46)
T ss_dssp             CCCCCCSSCCS-SCCSSSCCCCSSHHHHHHHHGG-GSSSCCC
T ss_pred             ccccCCCCCCC-cCCCCCCchhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 8888887

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.2e-08  Score=72.79  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eq2_A            2 SSGSSGTGGKP-YQCNECGKAFSQTSKLARHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCCSSSSSCS-SSCCSSCCCCSSHHHHHHHGGG-GCCCCCC
T ss_pred             CcccccCCCCC-eECCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888887

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.57  E-value=3.3e-08  Score=65.95  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      +|+++++|.|.+|++.|.....|.+|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47788888888888888888888888888888764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2e-08  Score=71.74  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eoh_A            2 SSGSSGSGKKP-YECKECRKTFIQIGHLNQHKRV-HTGERSS   41 (46)
T ss_dssp             CCCCSCCCSCS-CCCSSSCCCCSSHHHHHHHHHH-CSSCCSC
T ss_pred             CCCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHH-hCCCCCC
Confidence            37899999999 9999999999999999999999 8888887

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.56  E-value=2.9e-08  Score=66.04  Aligned_cols=35  Identities=23%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      +|+++++|.|.+|++.|.....|.+|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            46778888888888888888888888888888764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=3.4e-08  Score=70.15  Aligned_cols=43  Identities=12%  Similarity=0.092  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccC
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCG  124 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cg  124 (575)
                      ..+...+||.|.+|++.|... ..|..|+++|+++++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCH-HHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCH-HHHHHHHHHccCCCCCCCcCCC
Confidence            456778999999999999887 7999999999999999999997

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.8e-08  Score=71.88  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2enf_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCS-CBCSSSCCBCSSHHHHHHHHTT-TTTSSCC
T ss_pred             CCCcCCCCCcC-eECCCCCcccCCHHHHHHHHHh-hCCCCCC
Confidence            48899999999 9999999999999999999998 7888887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.2e-08  Score=72.69  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eow_A            2 SSGSSGTGEKP-YKCNECGKAFRARSSLAIHQAT-HSGEKPS   41 (46)
T ss_dssp             CCCCCSCCCCC-EECTTSCCEESSHHHHHHHHHH-HCCCSCS
T ss_pred             CccCCCCCCCC-eeccccCChhcCHHHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888887

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.3e-08  Score=72.63  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yth_A            2 SSGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCSCCCCSSS-BCCSSSCCCBSSHHHHHHHGGG-GTTCCCS
T ss_pred             CcccCCCCCcC-CCCCCCCcccCCHHHHHHHHHh-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888887

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.55  E-value=1.5e-08  Score=72.31  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emj_A            2 SSGSSGTGEKP-FECAECGKSFSISSQLATHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCS-EECSSSSCEESSHHHHHHHHHH-HTTSCSS
T ss_pred             CCCCCCCCCCC-EECCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999999 7888887

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.1e-08  Score=73.10  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em3_A            2 SSGSSGTGEKP-YECKVCSKAFTQKAHLAQHQKT-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCS-EECSSSCCEESSHHHHHHHHHH-HCCCCCC
T ss_pred             CCCCCCCCCcC-eECCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 7888887

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=2.1e-08  Score=71.58  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yti_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARHRGI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCCT-TCCSSSCCCCSSHHHHHHHHTT-TSCSCCS
T ss_pred             CCCcCCCCCcC-eECCCCCcccCChhHHHHHhHh-cCCCCCC
Confidence            48899999999 9999999999999999999998 7888887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.4e-08  Score=72.51  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yto_A            2 SSGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQS-HTGERHS   41 (46)
T ss_dssp             CCCCCCCSCCC-EECSSSCCEESSHHHHHHHHHH-HTCCCBT
T ss_pred             CcccccCCCCC-EECcccCCccCCHhHHHHHHHH-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888887

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=1.7e-08  Score=72.15  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em4_A            2 SSGSSGTGQRP-YECIECGKAFKTKSSLICHRRS-HTGEKPS   41 (46)
T ss_dssp             CSCCCCCCSSS-EECSSSCCEESSHHHHHHHHHH-HSSSSCC
T ss_pred             CCccccCCCcC-cCCCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            48899999999 9999999999999999999999 7888887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=2.2e-08  Score=70.57  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2en7_A            2 SSGSSGTGMKP-YVCNECGKAFRSKSYLIIHTRT-HTGESGP   41 (44)
T ss_dssp             CSCCCSSSSSS-SCCTTTCCCCSSHHHHHHHHTT-TCCSSSS
T ss_pred             CCCcCCCCCcC-eECCCCCCccCCHHHHHHHhhh-cCCCCCC
Confidence            58899999999 9999999999999999999998 7888877

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.7e-08  Score=71.18  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=37.2

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2eoj_A            2 SSGSSGTGENP-YECCECGKVFSRKDQLVSHQKT-HSGQSGP   41 (44)
T ss_dssp             CSCCSSSSCCS-CEETTTTEECSSHHHHHHHHTT-SSSSCSC
T ss_pred             CCccccCCCcC-eeCCCCCCccCCHHHHHHHHHH-cCCCCCC
Confidence            48899999999 9999999999999999999999 7888877

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.3e-08  Score=72.75  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eoz_A            2 SSGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRV-HTQETLS   41 (46)
T ss_dssp             CSCCCCSSCCS-EEETTTTEEESSHHHHHHHHHH-HSSCCSS
T ss_pred             CccccCCCCCC-eECcccChhhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 7888887

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.9e-08  Score=71.71  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emi_A            2 SSGSSGTGERH-YECSECGKAFIQKSTLSMHQRI-HRGEKPS   41 (46)
T ss_dssp             CCCCSCSSCCC-EECSSSCCEESSHHHHHHHHGG-GCSCCCC
T ss_pred             CCCcccCCCCC-CCCCCCCcccCCHHHHHHHHhH-hCCCCCC
Confidence            48899999999 9999999999999999999999 7888877

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=2.1e-08  Score=71.50  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2emg_A            2 SSGSSGTGENP-FICSECGKVFTHKTNLIIHQKI-HTGERPS   41 (46)
T ss_dssp             CCCCCCCSCCS-CBCTTTCCBCSSHHHHHHHHTT-TSCCCCS
T ss_pred             CCCCCCCCCCC-EECCccCcccCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999998 7888887

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.4e-08  Score=71.31  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em6_A            2 SSGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCSCCCCCCC-CBCSSSCCBCSSHHHHHHHHTT-TSSSCCC
T ss_pred             CCccccCCCCC-eECCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            48899999999 9999999999999999999998 8888887

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.7e-08  Score=72.04  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytp_A            2 SSGSSGTGERH-YECSECGKAFARKSTLIMHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCSSCCCCC-EECSSSCCEESSHHHHHHHHTT-TSCCCCC
T ss_pred             CcccCcCCCCC-eECCcCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999998 8888887

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.6e-08  Score=71.27  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2eof_A            2 SSGSSGTGEKP-YECNECQKAFNTKSNLMVHQRT-HTGESGP   41 (44)
T ss_dssp             CCSSCCSCCCS-EECTTTCCEESCHHHHHHHHHH-TTTSSCS
T ss_pred             CCccCCCCCCC-eECCCCCcccCCHhHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 7788877

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.2e-08  Score=71.37  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eq1_A            2 SSGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCC-CCCTTTTCCCSSHHHHHHHHTT-TCCSCCS
T ss_pred             CcccccCCCCC-eECCcCChhhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 7888887

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.8e-08  Score=70.90  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en9_A            2 SSGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCSSCC-CBCTTTCCBCSSHHHHHHHHHH-HTSSCCC
T ss_pred             CCCCCCCCCCC-EECCccCcccCCHHHHHHHHHH-cCCCCCC
Confidence            47899999999 9999999999999999999999 7888887

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.2e-08  Score=71.36  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   41 (46)
T 2eor_A            2 SSGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRI-HTGEKPS   41 (46)
T ss_dssp             CSSSSSSCCCS-EECTTTCCEESSHHHHHHHHHH-HHSCCCS
T ss_pred             CCCcCcCCCcC-ccCCCCCCCcCCHHHHHHHHHh-cCCCCCC
Confidence            48899999999 9999999999999999999999 7788887

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=5e-09  Score=86.71  Aligned_cols=60  Identities=8%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      .|.++|+++++|.|.+|++.|.....|.+|+++|+++++ |+|..|.    +...|..|.++ |.+
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~----~~~~~~~~~~~-~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQE----RRKQLLSKQKY-ADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCS----CCCCCCCCCCC-CCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhh----hHHHHHhhhcc-ccc
Confidence            456789999999999999999999999999999999999 9997764    45666677777 443

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.4e-08  Score=72.47  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~p~   41 (46)
T 2yts_A            2 SSGSSGTGEKP-YICNECGKSFIQKSHLNRHRRI-HTGEKPS   41 (46)
T ss_dssp             CCSCCCCSCCS-EECSSSCCEESSHHHHHHHGGG-TSSCCSS
T ss_pred             CCCCCCCCCcC-EECCCCChhhCChHHHHHHHHh-cCCCCCc
Confidence            48899999999 9999999999999999999998 8888887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1.8e-08  Score=71.17  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2yu5_A            2 SSGSSGAGENP-FKCSKCDRVFTQRNYLVQHERT-HARKSGP   41 (44)
T ss_dssp             CCSCCCSCCCS-EECSSSSCEESSSHHHHHHHHH-CCCCCSS
T ss_pred             CCccccCCCCC-eECCCCCchhCCHHHHHHHhHh-cCCCCCC
Confidence            58899999999 9999999999999999999999 7888877

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.2e-08  Score=71.36  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytf_A            2 SSGSSGTGEKP-FECSECQKAFNTKSNLIVHQRT-HTGEKPS   41 (46)
T ss_dssp             CCCCSSCCCCS-EECSSSCCEESSHHHHHHHHHT-SCSSSSS
T ss_pred             CCCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999999 8888887

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.3e-08  Score=71.04  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         1 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   40 (42)
T 2ytb_A            1 GSSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRV-HTGSGPS   40 (42)
T ss_dssp             CCCCCCCSCCS-BCCTTTTCCBSSHHHHHTTGGG-TSCCSCC
T ss_pred             CCccccCCCCC-eeCCCccchhCCHHHHHHHHHH-hCCCCCC
Confidence            47899999999 9999999999999999999998 7888776

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.2e-08  Score=71.54  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eon_A            3 SGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSV-HSGERPS   41 (46)
T ss_dssp             CSSSCSSCCS-CBCSSSCCBCSSHHHHHHHTTT-TTSCCSC
T ss_pred             CCCCCCCCcc-cCCCCCCcccCcHHHHHHHHHh-cCCCCCC
Confidence            7889999999 9999999999999999999998 8888887

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.5e-08  Score=72.20  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yrj_A            2 SSGSSGTGEKP-YRCGECGKAFAQKANLTQHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCC-EECSSSCCEESSHHHHHHHHTT-TSSCCSS
T ss_pred             CCccCCCCCCC-eECCCCCCccCCHHHHHHHHHH-cCCCCCC
Confidence            48899999999 9999999999999999999998 7888887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2e-08  Score=71.60  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=36.0

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ++++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 ~~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ep0_A            3 SGSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSTTCCS-EECSSSCCEESSHHHHHHHHTT-TSSSCCC
T ss_pred             CCCCCCCCCC-eeCcccCcccCChHHHHHHHHH-hCCCCCC
Confidence            4678999999 9999999999999999999998 8888888

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2.5e-08  Score=69.59  Aligned_cols=39  Identities=31%  Similarity=0.573  Sum_probs=36.3

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEKP-YPCEICGTRFRHLQTLKSHLRI-HTGSGPS   40 (42)
T ss_dssp             CCSCCSSSCC-BCCSSSCCCBSSHHHHHHHTTT-TSCCSST
T ss_pred             CCcccCCCCC-EECCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            7889999999 9999999999999999999998 7787776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.9e-08  Score=70.86  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emz_A            2 SSGSSGSGERP-FKCNECGKGFGRRSHLAGHLRL-HSREKSS   41 (46)
T ss_dssp             CCCSCSSCCCS-CCCSSSCCCCSSHHHHHHHHHH-HHHTTCC
T ss_pred             CCCcCCCCCCC-eECCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            48899999999 9999999999999999999999 7777877

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.49  E-value=3.1e-08  Score=68.99  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+||+.|.+...|..|+++ |.++++|
T Consensus         2 H~~~H~~~~~-~~C~~C~k~f~~~~~l~~H~~~-H~~~k~~   40 (42)
T 2epc_A            2 SSGSSGGETP-YLCGQCGKSFTQRGSLAVHQRS-CSQSGPS   40 (42)
T ss_dssp             CCSCCCSSCC-EECSSSCCEESSHHHHHHHHHH-TTCCCCC
T ss_pred             CCccCCCCCC-eECCCCCcccCCHHHHHHHhhh-cCCCCCC
Confidence            6789999999 9999999999999999999999 7888877

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.1e-08  Score=69.99  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   40 (42)
T 2en2_A            2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLI-HTGSGPS   40 (42)
T ss_dssp             CCCCCCSSCS-EECTTTCCEESSHHHHHHHTHH-HHSCCSS
T ss_pred             CCcccCCCCC-EeCCCcChhhCCHHHHHHHHHH-cCCCCCC
Confidence            7889999999 9999999999999999999998 7888776

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.6e-08  Score=71.37  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2emb_A            2 SSGSSGHTRKR-YECSKCQATFNLRKHLIQHQKT-HAAKSGP   41 (44)
T ss_dssp             CCCSCCCCCSS-EECTTTCCEESCHHHHHHHGGG-GCCCCCT
T ss_pred             CcccccCCCCC-eECCCCCCccCCHHHHHHHHHH-cCCCCCc
Confidence            58899999999 9999999999999999999998 7888877

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=3e-08  Score=70.73  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2enh_A            3 SGSSGTGEKP-YECDVCRKAFSHHASLTQHQRV-HSGEKPS   41 (46)
T ss_dssp             CCCCCCCSSS-CBCTTTCCBCSSSHHHHHHGGG-SCCSCCC
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHH-hCCCCCC
Confidence            6789999999 9999999999999999999998 8888887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=1.7e-08  Score=71.97  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2en3_A            2 SSGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRS-HERTDPS   41 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSCCEESSSHHHHHHHHH-HHHSCCS
T ss_pred             ccccccCCCCC-eeCcccChhhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 7777777

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.9e-08  Score=70.81  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=35.4

Q ss_pred             hhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         137 IQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       137 ~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         4 ~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytt_A            4 GSSGEGEKP-YQCSECGKSFSGSYRLTQHWIT-HTREKPS   41 (46)
T ss_dssp             SSSCSCCCT-TCCSSSCCCCSSHHHHHHHHTH-HHHCCCC
T ss_pred             CCCCCCCCC-eeCCCCCcccCCHHHHHHHHHH-cCCCCCC
Confidence            578999999 9999999999999999999999 7788888

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.1e-08  Score=71.45  Aligned_cols=40  Identities=18%  Similarity=0.322  Sum_probs=37.4

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eq3_A            2 SSGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAI-HTGKKPS   41 (46)
T ss_dssp             CCCCSSCCCCS-SEETTTTEECSSHHHHHHHHTT-SCCCCCC
T ss_pred             CcccCCCCCCC-eECCCCChhhCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999998 8888887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=2.6e-08  Score=71.14  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=37.0

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccC-cccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA-YLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~-~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.+ +++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~   42 (46)
T 2eoy_A            2 SSGSSGQKEKC-FKCNKCEKTFSCSKYLTQHERI-HTRGVKSG   42 (46)
T ss_dssp             CCCCCCCCSCC-EECSSSCCEESSSHHHHHHHTT-CCSCCTTS
T ss_pred             CCccccCCCCC-EECcCCCCcCCCHHHHHHHHHH-cCCCCCCC
Confidence            47899999999 9999999999999999999998 777 8887

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.48  E-value=8.4e-08  Score=63.39  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCCCCccc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPC  149 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C  149 (575)
                      +||.|.+||+.|.....|..|+++|+|+++ |.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE-ERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC-CCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            578999999999999999999999999988 753

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=4.8e-08  Score=68.97  Aligned_cols=39  Identities=23%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++|+++++ |.|.+|++.|.....|..|+++ |.++++|
T Consensus         3 h~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   41 (44)
T 2eou_A            3 SGSSGAAKTT-SECQECGKIFRHSSLLIEHQAL-HAGESGP   41 (44)
T ss_dssp             CSCSCSSSCC-CCCTTTCCCCSSHHHHHHHHHH-HTTSCCC
T ss_pred             CCCCCCCCcC-eECCCCCcccCCHHHHHHHHHH-HCCCCCC
Confidence            7889999999 9999999999999999999999 7888877

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=6.5e-08  Score=65.38  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             hhcCCCCcccccccCccccCh-hhHHHHhhhhhCCC
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRP-YNLKRHIQYECGKA  144 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~-~~L~~H~r~H~gek  144 (575)
                      ++|+++++|.|.+|++.|... ..|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            467888888888888888888 88888888888764

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=4e-08  Score=69.44  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=37.2

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      .|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEKP-YECNECGKAFIWKSLLIVHERT-HAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCCS-EECSSSCCEESSHHHHHHHHGG-GSSCSCC
T ss_pred             CCCcccCCCcC-eECCCCCcccCchHHHHHHHhH-hcCCCCC
Confidence            48899999999 9999999999999999999998 7888877

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=5.5e-08  Score=77.76  Aligned_cols=68  Identities=13%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             hccCCCCCCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCC
Q psy4272          74 LSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus        74 ~~~~~~~~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      ..+..|...+.+.+|+.|..|++.|.  ...|..|+ .|.++++|.|..|++.|.+ ..|..|+++|.+++.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~--~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS--ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGREGS   70 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC--HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBSS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh--HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCCcC
Confidence            34667878888999999999999995  57999999 8999999999999999885 899999999988753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1e-07  Score=65.66  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=26.8

Q ss_pred             hcCCCCcccccc--cCccccChhhHHHHhhhhhCC
Q psy4272         111 QKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       111 ~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      .|++++||+|.+  |++.|..+..|++|+++|+|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            367788888876  888888888888888888875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=8.6e-08  Score=64.35  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5778888888888888888888888888887764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.1e-07  Score=63.58  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=27.8

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5778888888888888888888888888888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1e-07  Score=64.02  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            5777888888888888888888888888887764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=7.9e-08  Score=65.21  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             hhcCCCCcccccccCccccChhhHHHH-hhhhhCC
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRH-IQYECGK  143 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H-~r~H~ge  143 (575)
                      ++|++++||.|.+|++.|..+..|.+| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            567778888888888888888888888 7777764

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=3.4e-08  Score=69.69  Aligned_cols=40  Identities=13%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +|+++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2eox_A            2 SSGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKI-HTRKSGP   41 (44)
T ss_dssp             CCCCCCCCCCC-EEETTTTEEESSSHHHHTTHHH-HCCCCCC
T ss_pred             CCCcCCCCCCC-eECcccCcccCCHHHHHHHHHH-hCCCCCC
Confidence            58899999999 9999999999999999999999 7888877

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.41  E-value=8.9e-08  Score=64.62  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      |+++|+++++ |.|.+|++.|.....|..|+++ |.+
T Consensus         2 H~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~   36 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKR-HML   36 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGG-GTC
T ss_pred             CCCcCCCCCC-ccCCCCCcccCcHHHHHHHHHH-hcc
Confidence            7889999999 9999999999999999999998 544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.40  E-value=1.4e-07  Score=64.08  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             cCCCCccccc--ccCccccChhhHHHHhhhhhCCCCCc
Q psy4272         112 KRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKAPQF  147 (575)
Q Consensus       112 H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~  147 (575)
                      |+++++|.|.  .|++.|.....|.+|+++|+++++ |
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK-F   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT-T
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC-C
Confidence            6788999999  599999999999999999999888 6

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.8e-07  Score=62.59  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=27.1

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4677788888888888888888888888887764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1e-07  Score=67.95  Aligned_cols=39  Identities=13%  Similarity=0.132  Sum_probs=35.9

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      ++++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 ~~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eom_A            3 SGSSGHGERG-HRCSDCGKFFLQASNFIQHRRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSS-CCCSSSCCCCSSHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCCCCCCC-cCCCCCCCeeCChHHHHHHHHH-hCCCCCC
Confidence            3578999999 9999999999999999999999 7888888

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=2.7e-07  Score=64.77  Aligned_cols=41  Identities=2%  Similarity=-0.114  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccc
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQ  122 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~  122 (575)
                      ..+.+.++|.|.+|++.|... ..|..|+++|+++++|.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEE-ASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSH-HHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCCh-HHHHHHHHhhCCCCCccCCC
Confidence            456778999999999999988 79999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=8.5e-08  Score=68.80  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=36.2

Q ss_pred             HhhhhhCCCCCcccc--cccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |.++|+++++ |.|.  .|++.|.....|..|+++ |.++++|
T Consensus         3 ~~~~H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   43 (48)
T 2ent_A            3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRS-HSGVKPS   43 (48)
T ss_dssp             CCCSSCCCCC-EECCSSSCCCEESSHHHHHHHHTT-SCCCCSC
T ss_pred             CCCCcCCCCC-eECCCCCCCCccCCHHHHHHHHHH-hCCCCCC
Confidence            5678999999 9998  899999999999999999 8888888

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=9.2e-08  Score=67.83  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |.++|+++++ |.|.+|++.|.+...|..|+++ |.++++|
T Consensus         3 ~~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~   41 (45)
T 2epu_A            3 SGSSGTGQKP-FECTHCGKSFRAKGNLVTHQRI-HTGEKSG   41 (45)
T ss_dssp             CCCCCCSCCS-EEETTTTEEESSHHHHHHHHTT-TSSCCCC
T ss_pred             CCCCCCCCcC-ccCCCCCCccCChHHHHHHHHH-hCCCCCC
Confidence            4578999999 9999999999999999999998 8888887

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.5e-07  Score=61.98  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=27.0

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|.++++|.|.+|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4667788888888888888888888888887764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.32  E-value=1.8e-07  Score=67.62  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhh-hhhCCCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQ-YECGKAP  145 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp  145 (575)
                      +|+++++|.|.+||+.|.....|.+|++ +|+++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            3666677777777777777777777776 6766544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.7e-07  Score=63.23  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             hhhhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         137 IQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       137 ~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +++|+++++ |.|.+||+.|.....|..|+++ |.+++
T Consensus         1 ~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~-h~~~k   36 (37)
T 2elo_A            1 GSSGSSGRS-YSCPVCEKSFSEDRLIKSHIKT-NHPEV   36 (37)
T ss_dssp             CCCCCCCCC-CEETTTTEECSSHHHHHHHHHH-HCSSC
T ss_pred             CCCCCCCCC-cCCCCCCCccCCHHHHHHHHHH-HcCCC
Confidence            367999999 9999999999999999999999 66554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=5.8e-07  Score=69.87  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccc
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSY  154 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk  154 (575)
                      .|.+++||.|.+|+|.|.++..|.+|+++|+++.  ..|.+|+.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~--~~~~~~~~   48 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS--LQLGYIDL   48 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS--CCCCSCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc--cccccccC
Confidence            4678888999999999999888999988888875  45666654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.26  E-value=4.5e-07  Score=61.34  Aligned_cols=34  Identities=21%  Similarity=0.567  Sum_probs=27.9

Q ss_pred             hcCCCCcccccc--cCccccChhhHHHHhhhhhCCC
Q psy4272         111 QKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       111 ~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|+++++|.|.+  ||+.|.....|.+|+++|+|++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367888888884  8888888888888888888764

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=5.5e-07  Score=62.24  Aligned_cols=39  Identities=5%  Similarity=-0.126  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccc
Q psy4272          81 PVGKATLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTC  120 (575)
Q Consensus        81 ~~~~~~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C  120 (575)
                      ..+.+.++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQK-GSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSH-HHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCH-HHHHHHHHHhCCCCCcCC
Confidence            466788999999999999988 799999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.25  E-value=2.7e-07  Score=66.23  Aligned_cols=38  Identities=24%  Similarity=0.542  Sum_probs=29.6

Q ss_pred             HHhhhcCCCCccccc--ccCccccChhhHHHHhhhhhCCC
Q psy4272         107 ESIRQKRLAQGLTCL--QCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|...|+++++|.|.  .||+.|.....|.+|+++|+|++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            345568888888885  68888888888888888888764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.22  E-value=3.5e-07  Score=62.09  Aligned_cols=32  Identities=25%  Similarity=0.580  Sum_probs=26.5

Q ss_pred             cCCCCcccccccCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         112 KRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       112 H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      +.|+|||.|.+|||.|.++++|.+|+       | |.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------p-y~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------A-YYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------H-HTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------C-eECcC
Confidence            56888999999999999999998887       5 77764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.22  E-value=1.1e-07  Score=62.31  Aligned_cols=31  Identities=19%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCCCCc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKAPQF  147 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~  147 (575)
                      +||.|.+||+.|.....|.+|+++|+++++ |
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA-L   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS-C
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC-C
Confidence            478888888888888888888888888887 5

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.22  E-value=7.2e-08  Score=79.65  Aligned_cols=61  Identities=10%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhh
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLER  215 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H  215 (575)
                      |.++|+++++ |.|.+|++.|.+...|..|+++ |.++++|                     +|..|.    ....|+.|
T Consensus        16 ~~~~H~~~kp-y~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~---------------------~C~~~~----~~~~~~~~   68 (88)
T 1x6f_A           16 GNGPRLQNST-YQCKHCDSKLQSTAELTSHLNI-HNEEFQK---------------------RAKRQE----RRKQLLSK   68 (88)
T ss_dssp             CCCSCCCCSC-EECSSSCCEESSHHHHHHHHHH-HHHHHHH---------------------HCCCCS----CCCCCCCC
T ss_pred             cccccCCCCC-CcCCCCCCEeCCHHHHHHHHHH-hCCCCCc---------------------ccchhh----hHHHHHhh
Confidence            4567999999 9999999999999999999999 8888888                     776554    56677778


Q ss_pred             hhhhhhhh
Q psy4272         216 NVSHEEIR  223 (575)
Q Consensus       216 ~~th~~~~  223 (575)
                      .++|.+..
T Consensus        69 ~~~~~~~~   76 (88)
T 1x6f_A           69 QKYADGAF   76 (88)
T ss_dssp             CCCCCCSS
T ss_pred             hccccccc
Confidence            77776543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.19  E-value=5.6e-07  Score=59.76  Aligned_cols=34  Identities=29%  Similarity=0.518  Sum_probs=30.6

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +|+++++ |.|.+|++.|.....|..|+++ |.+++
T Consensus         1 ~H~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~~   34 (35)
T 1srk_A            1 GSSGKRP-FVCRICLSAFTTKANCARHLKV-HTDTL   34 (35)
T ss_dssp             CCSCCSC-EECSSSCCEESSHHHHHHHHGG-GTSCC
T ss_pred             CCCCCcC-eeCCCCCcccCCHHHHHHHHHH-cCCCC
Confidence            4889999 9999999999999999999999 66654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.19  E-value=5.7e-07  Score=59.58  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +|+++++ |.|.+|++.|.+...|..|+++ |.+++
T Consensus         1 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-h~~~k   34 (35)
T 2elx_A            1 GSSGSSG-YVCALCLKKFVSSIRLRSHIRE-VHGAA   34 (35)
T ss_dssp             CCCCCCS-EECSSSCCEESSHHHHHHHHHH-TSCTT
T ss_pred             CCCCCCC-eECCCCcchhCCHHHHHHHHHH-HcCCC
Confidence            4789999 9999999999999999999999 55544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=3.8e-07  Score=61.74  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             hhhhhCCCCCcccccccccccChhhHHHH-HHhhccCc
Q psy4272         137 IQYECGKAPQFPCLYCSYRARHKHDLKKH-VTFKHAAY  173 (575)
Q Consensus       137 ~r~H~gekp~~~C~~Cgk~F~~~~~L~~H-~r~~H~~~  173 (575)
                      +++|++++| |+|..||+.|.....|..| +++ |.++
T Consensus         1 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~-H~~~   36 (37)
T 2elm_A            1 GSSGSSGHL-YYCSQCHYSSITKNCLKRHVIQK-HSNI   36 (37)
T ss_dssp             CCSSSSSCE-EECSSSSCEEECHHHHHHHHHHH-TCCC
T ss_pred             CCccCCCcC-eECCCCCcccCCHHHHHHHHHHH-ccCc
Confidence            367999999 9999999999999999999 777 6543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.15  E-value=7.8e-07  Score=60.78  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             hhCCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         140 ECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       140 H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++++ |.|.+||+.|.....|..|+++ |.++++|
T Consensus         1 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~   35 (39)
T 1njq_A            1 XWPPRS-YTCSFCKREFRSAQALGGHMNV-HRRDRAR   35 (39)
T ss_dssp             -CCSSS-EECTTTCCEESSHHHHHHHHHT-TCCSCTT
T ss_pred             CCCCCc-eECCCCCcccCCHHHHHHHHHH-cCCCccc
Confidence            678999 9999999999999999999999 8888877

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=1.3e-06  Score=67.94  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             hhhCCCCCccccc--ccccccChhhHHHHHHhhccCcccch
Q psy4272         139 YECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYLDHF  177 (575)
Q Consensus       139 ~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~~~~  177 (575)
                      .++|+|| |+|.+  |+|+|.+.++|+.|+++.|++++|+.
T Consensus        21 ~~sGEKP-YkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           21 RYSPYRP-YRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SSCSSCS-CBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cccCCCC-eECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            4789999 99976  99999999999999854499999983

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.09  E-value=1.5e-06  Score=54.74  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +||.|.+||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46778888888888888888887777764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.08  E-value=1.5e-06  Score=55.02  Aligned_cols=30  Identities=27%  Similarity=0.528  Sum_probs=22.0

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +++|.|.+||+.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            356777777777777777777777777654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=9.9e-07  Score=59.37  Aligned_cols=34  Identities=21%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             hhhhCCCCCcccccccccccCh-hhHHHHHHhhccCc
Q psy4272         138 QYECGKAPQFPCLYCSYRARHK-HDLKKHVTFKHAAY  173 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~-~~L~~H~r~~H~~~  173 (575)
                      ++|+++++ |.|.+|++.|.+. ..|..|+++ |.++
T Consensus         2 ~~h~~~k~-~~C~~C~k~f~~~~~~L~~H~~~-H~~~   36 (37)
T 2elp_A            2 SSGSSGRA-MKCPYCDFYFMKNGSDLQRHIWA-HEGV   36 (37)
T ss_dssp             CSCCCCCC-EECSSSSCEECSSCHHHHHHHHH-HHTC
T ss_pred             CCCCCCCC-eECCCCChhhccCHHHHHHHHHh-cCCC
Confidence            57899999 9999999999999 999999998 5543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.07  E-value=2.1e-06  Score=53.99  Aligned_cols=29  Identities=28%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            35777777777777777777777776653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=2.5e-06  Score=53.45  Aligned_cols=29  Identities=21%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46777777777777777777777777653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=2.2e-06  Score=53.78  Aligned_cols=29  Identities=34%  Similarity=0.776  Sum_probs=22.6

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46788888888888888888888887764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.03  E-value=1.5e-06  Score=62.65  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHH-hhccCcc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVT-FKHAAYL  174 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r-~~H~~~~  174 (575)
                      +|+|+++ |.|.+||+.|.+...|..|++ + |.++.
T Consensus         1 ~Ht~~kp-~~C~~C~k~F~~~~~L~~H~~~~-H~~e~   35 (48)
T 3iuf_A            1 GEDRDKP-YACDICGKRYKNRPGLSYHYAHS-HLAEE   35 (48)
T ss_dssp             -CTTTSC-EECTTTCCEESSHHHHHHHHHHS-SCC--
T ss_pred             CCCCCcC-EECCCcCcccCCHHHHHHHhhhh-cCCCC
Confidence            5899999 999999999999999999999 7 66543

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=1.8e-06  Score=59.31  Aligned_cols=33  Identities=24%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             hhhCCCCCccccc--ccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      .|+|++| |+|.+  |++.|.++..|++|+++ |+++
T Consensus         3 ~~~gekp-~~C~~~~C~k~F~~~~~L~~H~r~-Htg~   37 (38)
T 2eln_A            3 SGSSGIL-LKCPTDGCDYSTPDKYKLQAHLKV-HTAL   37 (38)
T ss_dssp             CSSCCCC-EECSSSSCCCEESCHHHHHHHHHH-HSCC
T ss_pred             CCCCCCC-CCCCCCCCCCccCCHHHHHHHHHh-cCCC
Confidence            4789999 99986  99999999999999999 6553

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=1.5e-06  Score=58.09  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             hhhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         138 QYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +.|+++++ |.|.+|++.|.....|..|+++ |.++
T Consensus         2 ~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   35 (36)
T 2elv_A            2 SSGSSGLL-YDCHICERKFKNELDRDRHMLV-HGDK   35 (36)
T ss_dssp             CCSCCCCC-EECSSSCCEESSHHHHHHHHTT-TSTT
T ss_pred             CCCCCCCC-eECCCCCCccCCHHHHHHHHHH-hcCC
Confidence            35889999 9999999999999999999998 6554

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=1.8e-06  Score=57.51  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=29.9

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +|+++++ |.|.+|++.|.....|..|+++ |.++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   35 (36)
T 2elt_A            3 SGSSGKP-YKCPQCSYASAIKANLNVHLRK-HTGE   35 (36)
T ss_dssp             CSCCCCS-EECSSSSCEESSHHHHHHHHHH-HTCC
T ss_pred             CCCCCCC-CCCCCCCcccCCHHHHHHHHHH-ccCC
Confidence            5889999 9999999999999999999998 5544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=1.8e-06  Score=57.71  Aligned_cols=34  Identities=32%  Similarity=0.645  Sum_probs=30.3

Q ss_pred             hhhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         138 QYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +.|+++++ |.|.+|++.|.....|..|+++ |.++
T Consensus         2 ~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   35 (36)
T 2elq_A            2 SSGSSGKP-FKCSLCEYATRSKSNLKAHMNR-HSTE   35 (36)
T ss_dssp             CSSCCCCS-EECSSSSCEESCHHHHHHHHHH-SSTT
T ss_pred             CCCCCCCC-ccCCCCCchhCCHHHHHHHHHH-hccC
Confidence            36899999 9999999999999999999998 5543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=3.2e-06  Score=54.73  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=22.3

Q ss_pred             CCccccc--ccCccccChhhHHHHhhhhhCCC
Q psy4272         115 AQGLTCL--QCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       115 ~kp~~C~--~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ++||.|.  .||+.|.....|.+|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3677777  67877877777777877777764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.01  E-value=3.1e-06  Score=53.44  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ++|.|.+||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            35667777777777777777777766654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=2.7e-06  Score=56.62  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      .|+++++ |.|.+|++.|.+...|..|+++ |.++
T Consensus         3 ~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~-H~~e   35 (36)
T 2elr_A            3 SGSSGKT-HLCDMCGKKFKSKGTLKSHKLL-HTAD   35 (36)
T ss_dssp             CCCCCSS-CBCTTTCCBCSSHHHHHHHHHH-HSSC
T ss_pred             CCCCCCC-eecCcCCCCcCchHHHHHHHHH-hcCC
Confidence            5889999 9999999999999999999999 5554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.98  E-value=3.5e-06  Score=54.17  Aligned_cols=29  Identities=28%  Similarity=0.681  Sum_probs=21.3

Q ss_pred             Cccccc--ccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCL--QCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~--~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +||.|.  .||+.|.....|..|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            467776  77777777777777777777664

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.20  E-value=1e-06  Score=55.64  Aligned_cols=29  Identities=21%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +||.|.+||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            35677777777777777777777776653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.95  E-value=3e-06  Score=52.94  Aligned_cols=27  Identities=19%  Similarity=0.578  Sum_probs=18.4

Q ss_pred             CcccccccCccccChhhHHHHhhhhhC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ++|.|.+|++.|.....|..|+++|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            566777777777777777777766653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.18  E-value=1.2e-06  Score=55.60  Aligned_cols=28  Identities=29%  Similarity=0.800  Sum_probs=19.7

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      ++|.|.+||+.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5677777777777777777777777665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.93  E-value=3.5e-06  Score=56.95  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             hhCCCCCcccc--cccccccChhhHHHHHHhhccCcccc
Q psy4272         140 ECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       140 H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      |+++++ |.|.  .|++.|.+...|+.|+++ |.++++|
T Consensus         1 H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKP-FLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF   37 (38)
T ss_dssp             CTTCCC-EECCCTTTCCEESSHHHHHHHHHH-HHTTTTT
T ss_pred             CCCCcc-eECCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            678999 9999  599999999999999999 7777665

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.91  E-value=4e-06  Score=51.99  Aligned_cols=25  Identities=12%  Similarity=0.353  Sum_probs=15.6

Q ss_pred             CcccccccCccccChhhHHHHhhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      +||.|.+||+.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566666666666666666666655

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=4.5e-06  Score=55.65  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=29.5

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      .|.++++ |.|.+|++.|.....|..|+++ |.++
T Consensus         3 ~~~~~k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   35 (36)
T 2els_A            3 SGSSGKI-FTCEYCNKVFKFKHSLQAHLRI-HTNE   35 (36)
T ss_dssp             TTSCCCC-EECTTTCCEESSHHHHHHHHHH-HCCC
T ss_pred             CCCCCCC-EECCCCCceeCCHHHHHHHHHH-hCCC
Confidence            4788999 9999999999999999999999 5543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.91  E-value=3.1e-06  Score=52.70  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=16.2

Q ss_pred             CcccccccCccccChhhHHHHhhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      +||.|.+||+.|.....|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5566666666666666666666655

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.90  E-value=5.2e-06  Score=51.24  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=17.3

Q ss_pred             cccccccCccccChhhHHHHhhhhhC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ||.|.+||+.|.....|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46677777777777777777766665

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.89  E-value=6.5e-06  Score=54.03  Aligned_cols=31  Identities=29%  Similarity=0.510  Sum_probs=28.1

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      +| |.|.+||+.|.....|..|+++ |.+++++
T Consensus         1 kp-~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~   31 (33)
T 1rim_A            1 YK-FACPECPKRFMRSDHLSKHITL-HELLGEE   31 (33)
T ss_dssp             CC-CCCSSSCCCCSSHHHHHHHHHH-HTTTCCC
T ss_pred             Cc-ccCCCCCchhCCHHHHHHHHHH-hCCCCCC
Confidence            46 9999999999999999999999 8887766

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.89  E-value=1.8e-06  Score=61.83  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             HHHHhhhhhCCCCCcccc--cccccccChhhHHHHHHhhccCc
Q psy4272         133 LKRHIQYECGKAPQFPCL--YCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       133 L~~H~r~H~gekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +..|...|+++++ |.|.  .||+.|.+...|..|+++ |.++
T Consensus         6 ~~~~~~~H~~~k~-~~C~~~~C~k~F~~~~~L~~H~~~-H~~e   46 (47)
T 1ncs_A            6 SIDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQT-HLED   46 (47)
T ss_dssp             SGGGSCEEETTTE-EECCCTTCCCEECSSSSHHHHHHH-HTTT
T ss_pred             HHHHHhccCCCCC-eECCCCCCCCccCCHHHHHHHHHH-ccCC
Confidence            3455667999999 9996  799999999999999999 6554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.87  E-value=5.9e-06  Score=52.31  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             CcccccccCccccChhhHHHH-hhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRH-IQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H-~r~H~gek  144 (575)
                      ++|.|..||+.|.....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            356777777777777777777 56676653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.76  E-value=9.3e-06  Score=54.65  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             hhhCCCCCccccc--ccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      .|+++++ |.|.+  ||+.|.....|..|+++ |.++
T Consensus         2 ~~~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~e   36 (37)
T 1va1_A            2 DPGKKKQ-HICHIQGCGKVYGKTSHLRAHLRW-HTGE   36 (37)
T ss_dssp             CSSSCCC-EECCSTTCCCEESCHHHHHHHHHH-HHTT
T ss_pred             CCCCCCC-CCCCCCCCCCccCCHHHHHHHHHh-cCCC
Confidence            3789999 99995  99999999999999999 6554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.90  E-value=4.6e-06  Score=51.19  Aligned_cols=24  Identities=25%  Similarity=0.675  Sum_probs=13.3

Q ss_pred             cccccccCccccChhhHHHHhhhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      ||.|.+||+.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.71  E-value=1.7e-05  Score=61.45  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      .|.+++| |+|.+|+|.|.+...|..|+++ |+++
T Consensus         7 ~~~~ekp-y~C~~CgK~F~~~s~L~~H~r~-Htg~   39 (66)
T 2epp_A            7 GLREAGI-LPCGLCGKVFTDANRLRQHEAQ-HGVT   39 (66)
T ss_dssp             SCCCCCC-CCCTTTCCCCSCHHHHHHHHHH-HTTT
T ss_pred             CCCCccC-cCCCCCCCccCCHHHHHhhhhh-hCCC
Confidence            4788999 9999999999999999999999 5543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.67  E-value=1.4e-05  Score=54.08  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=24.9

Q ss_pred             hhCCCCCcccccccccccChhhHHHHH
Q psy4272         140 ECGKAPQFPCLYCSYRARHKHDLKKHV  166 (575)
Q Consensus       140 H~gekp~~~C~~Cgk~F~~~~~L~~H~  166 (575)
                      +.|++| |.|.+|||.|.+.++|++|+
T Consensus         3 ~~gekp-~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPAR-FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCC-CEETTTTEECSCHHHHHHHH
T ss_pred             CCCccC-eECCCCCCccCCHhHccCcC
Confidence            578999 99999999999999999998

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.63  E-value=1e-05  Score=52.62  Aligned_cols=32  Identities=9%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             CCCCCCCCcchhhcchhHHHHHhhhcCCCCccc
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESIRQKRLAQGLT  119 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~  119 (575)
                      +||.|.+|++.|... +.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~f~~~-~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRS-DALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHH-HTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCH-HHHHHHHHHHccCCCCC
Confidence            479999999999988 79999999999999873

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=2.5e-05  Score=49.04  Aligned_cols=29  Identities=21%  Similarity=0.479  Sum_probs=25.6

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +++ |.|..||+.|.....|..|+++ |.++
T Consensus         1 ~k~-~~C~~C~~~f~~~~~l~~H~~~-h~~~   29 (30)
T 2m0d_A            1 MKP-YQCDYCGRSFSDPTSKMRHLET-HDTD   29 (30)
T ss_dssp             CCC-EECTTTCCEESCHHHHHHHHHT-TCCC
T ss_pred             CcC-ccCCCCCcccCCHHHHHHHHHH-hccC
Confidence            467 9999999999999999999999 5543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.59  E-value=3.6e-05  Score=47.99  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=24.7

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ++ |.|.+||+.|.....|..|+++ |.++
T Consensus         1 k~-~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 1ard_A            1 RS-FVCEVCTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CC-CBCTTTCCBCSSHHHHHHHHHH-HSCC
T ss_pred             CC-eECCCCCcccCCHHHHHHHHHH-hcCC
Confidence            46 9999999999999999999999 5543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.57  E-value=4.4e-05  Score=47.86  Aligned_cols=27  Identities=33%  Similarity=0.881  Sum_probs=24.1

Q ss_pred             CCCcccccccccccChhhHHHHHHhhcc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      ++ |.|.+||+.|.....|..|+++|+.
T Consensus         1 k~-~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            1 KT-YQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CC-CCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CC-ccCCCCCCccCCHHHHHHHHHHHcc
Confidence            46 9999999999999999999999543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.56  E-value=2.9e-05  Score=48.56  Aligned_cols=28  Identities=25%  Similarity=0.458  Sum_probs=24.8

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ++ |.|..||+.|.....|..|+++ |.++
T Consensus         1 k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 1rik_A            1 YK-FACPECPKRFMRSDHLTLHILL-HENK   28 (29)
T ss_dssp             CC-EECSSSSCEESCSHHHHHHHTG-GGSC
T ss_pred             CC-ccCCCCCchhCCHHHHHHHHHH-hcCC
Confidence            46 9999999999999999999998 5543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.56  E-value=3e-05  Score=47.84  Aligned_cols=26  Identities=31%  Similarity=0.700  Sum_probs=23.9

Q ss_pred             CCCCcccccccccccChhhHHHHHHhh
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      +++ |.|..||+.|.....|..|+++|
T Consensus         1 ek~-~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKP-FSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCC-EECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcC-ccCCCcChhhCCHHHHHHHHHHc
Confidence            467 99999999999999999999983

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.54  E-value=3.3e-05  Score=48.23  Aligned_cols=27  Identities=33%  Similarity=0.652  Sum_probs=18.2

Q ss_pred             Cccccc--ccCccccChhhHHHHhhhhhC
Q psy4272         116 QGLTCL--QCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       116 kp~~C~--~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ++|.|.  .||+.|.....|..|+++|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            356677  777777777777777776653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.53  E-value=2.4e-05  Score=48.50  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             CCCCcccccccccccChhhHHHHHHhh
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      +++ |.|.+||+.|.....|..|+++|
T Consensus         1 ~k~-~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAP-YRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCT-EEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcC-cCCCCCCcccCCHHHHHHHHHhc
Confidence            467 99999999999999999999883

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=4.6e-05  Score=47.34  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=24.6

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ++ |.|..||+.|.....|..|+++ |.++
T Consensus         1 k~-~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 2m0e_A            1 KE-HKCPHCDKKFNQVGNLKAHLKI-HIAD   28 (29)
T ss_dssp             CC-CCCSSCCCCCCTTTHHHHHHHH-HHSC
T ss_pred             CC-CcCCCCCcccCCHHHHHHHHHH-hccC
Confidence            46 9999999999999999999999 5443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.52  E-value=3.1e-05  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.630  Sum_probs=23.9

Q ss_pred             CCCCcccccccccccChhhHHHHHHhh
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      +++ |.|.+||+.|.....|..|+++|
T Consensus         1 ~k~-~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRP-YSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCS-EECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcC-ccCCCCCcccCCHHHHHHHHHhc
Confidence            467 99999999999999999999983

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.50  E-value=6.1e-05  Score=48.40  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=25.6

Q ss_pred             CCCCcccc--cccccccChhhHHHHHHhhccCc
Q psy4272         143 KAPQFPCL--YCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       143 ekp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +++ |.|.  .||+.|.....|..|+++ |.++
T Consensus         1 ek~-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   31 (32)
T 1zfd_A            1 DRP-YSCDHPGCDKAFVRNHDLIRHKKS-HQEK   31 (32)
T ss_dssp             CCS-BCCCCTTCCCCBSSSHHHHHHHGG-GTCC
T ss_pred             CCC-CcCcCCCCCCccCCHHHHHHHHHH-ccCC
Confidence            467 9999  899999999999999999 6554

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=4.3e-05  Score=47.55  Aligned_cols=28  Identities=25%  Similarity=0.583  Sum_probs=24.7

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ++ |.|.+|++.|.....|..|+++ |.++
T Consensus         1 ~~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 2m0f_A            1 GP-LKCRECGKQFTTSGNLKRHLRI-HSGE   28 (29)
T ss_dssp             CC-EECTTTSCEESCHHHHHHHHHH-HHTC
T ss_pred             CC-ccCCCCCCccCChhHHHHHHHH-hcCC
Confidence            46 9999999999999999999999 5543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.56  E-value=2e-05  Score=49.72  Aligned_cols=28  Identities=25%  Similarity=0.635  Sum_probs=24.9

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      +++ |.|..||+.|.....|..|+++ |.+
T Consensus         1 ~k~-~~C~~C~k~f~~~~~l~~H~~~-h~~   28 (30)
T 2lvr_A            1 MKP-YVCIHCQRQFADPGALQRHVRI-HTG   28 (30)
Confidence            367 9999999999999999999998 544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.43  E-value=5.3e-05  Score=47.70  Aligned_cols=28  Identities=18%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             CCCcccccccccccChhhHHHH-HHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKH-VTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H-~r~~H~~~  173 (575)
                      ++ |.|..||+.|.....|..| +++ |.++
T Consensus         1 k~-~~C~~C~k~f~~~~~l~~H~~~~-H~~~   29 (30)
T 1paa_A            1 KA-YACGLCNRAFTRRDLLIRHAQKI-HSGN   29 (30)
T ss_dssp             CC-SBCTTTCCBCSSSHHHHHHHTTT-SCCC
T ss_pred             CC-cCCcccCcccCChHHHHHHHHHH-ccCC
Confidence            46 9999999999999999999 566 6654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.43  E-value=5.3e-05  Score=46.46  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             cccccccccccChhhHHHHHHhhccC
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      |.|.+||+.|.....|..|+++ |.+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~-h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV-HKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG-TCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH-cCC
Confidence            9999999999999999999998 543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.55  E-value=2.1e-05  Score=49.40  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=24.5

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      ++ |.|.+||+.|.....|..|+++ |.++
T Consensus         1 k~-~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 2lvt_A            1 KP-CQCVMCGKAFTQASSLIAHVRQ-HTGE   28 (29)
Confidence            46 9999999999999999999998 5543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.42  E-value=7.1e-05  Score=47.74  Aligned_cols=28  Identities=32%  Similarity=0.713  Sum_probs=24.7

Q ss_pred             CCCcccc--cccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCL--YCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +| |.|.  .||+.|.....|..|+++ |.++
T Consensus         1 kp-~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   30 (31)
T 1sp2_A            1 RP-FMCTWSYCGKRFTRSDELQRHKRT-HTGE   30 (31)
T ss_dssp             CC-CBCCSTTCCCBCSSHHHHHHHHTT-TSCC
T ss_pred             CC-cCCcCCCCCcccCCHhHHHHHHHH-hcCC
Confidence            46 9998  999999999999999999 6554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.52  E-value=2.3e-05  Score=47.95  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=23.0

Q ss_pred             CCCcccccccccccChhhHHHHHHhh
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      +| |.|.+||+.|.....|..|+++|
T Consensus         1 kp-~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KP-YVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            46 99999999999999999999983

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00027  Score=54.34  Aligned_cols=52  Identities=23%  Similarity=0.598  Sum_probs=44.0

Q ss_pred             ccccc--cCccccChhhHHHHh-hhhhCCC------CCcccc--cccccccChhhHHHHHHhhc
Q psy4272         118 LTCLQ--CGRSYCRPYNLKRHI-QYECGKA------PQFPCL--YCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       118 ~~C~~--Cgk~F~~~~~L~~H~-r~H~gek------p~~~C~--~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |.|.+  |++.|.....|..|+ +.|.+.+      . |.|.  .|++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~-~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEP-LACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCC-EECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCC-CEeeCCCCcCCCCChHHHHhhccccC
Confidence            55766  999999999999998 5788766      6 9996  79999999999999998855

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.87  E-value=0.00037  Score=43.13  Aligned_cols=25  Identities=16%  Similarity=0.462  Sum_probs=22.9

Q ss_pred             CCCcccc--cccccccChhhHHHHHHhh
Q psy4272         144 APQFPCL--YCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~--~Cgk~F~~~~~L~~H~r~~  169 (575)
                      ++ |.|.  .||+.|.....|..|+++|
T Consensus         1 k~-~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MV-YVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CC-EEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CC-CCCcCCcCcCccCCHHHHHHHHHHh
Confidence            46 9999  9999999999999999983

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.85  E-value=0.0023  Score=55.50  Aligned_cols=30  Identities=23%  Similarity=0.270  Sum_probs=24.4

Q ss_pred             hhhhCCCCCcccccccccccChhhHHHHHHh
Q psy4272         138 QYECGKAPQFPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      ..|+|+++ |.|..|+|.|.+...|..|+++
T Consensus        43 ed~tGekp-fyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGL-HRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGC-SEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcc-eEcccCcchhCCHHHHHHHHhh
Confidence            45788888 8888888888888888888776

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.013  Score=44.74  Aligned_cols=47  Identities=11%  Similarity=0.144  Sum_probs=40.4

Q ss_pred             CCcchhhcchhHHHHHh-hhcCCCC------ccccc--ccCccccChhhHHHHhhhh
Q psy4272          93 AKLSDYENKMKNVRESI-RQKRLAQ------GLTCL--QCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus        93 ~C~~~f~~~~~~L~~H~-r~H~~~k------p~~C~--~Cgk~F~~~~~L~~H~r~H  140 (575)
                      .|++.|.+. ..|..|+ +.|.+.+      .|.|.  .|++.+.....|..|++++
T Consensus         8 ~C~~~f~~~-~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSL-FDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSH-HHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCH-HHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            388999988 7899998 5798766      79998  5999999999999999874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.25  E-value=0.0035  Score=54.34  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             hhhcCCCCcccccccCccccChhhHHHHhhhhh
Q psy4272         109 IRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       109 ~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      -..|+|+++|.|..|++.|.+...|..|+++..
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            346899999999999999999999999988653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.66  E-value=0.022  Score=49.84  Aligned_cols=76  Identities=7%  Similarity=-0.028  Sum_probs=51.5

Q ss_pred             CCCCCCCCcchhhcchhHHHHHh--hhcCCC-Cccccccc------CccccChhhHHHHhhhhhCCCCCccccccccccc
Q psy4272          87 LPSPLKAKLSDYENKMKNVRESI--RQKRLA-QGLTCLQC------GRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRAR  157 (575)
Q Consensus        87 ~p~~C~~C~~~f~~~~~~L~~H~--r~H~~~-kp~~C~~C------gk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~  157 (575)
                      +++.|.+|...|... +.+..|.  +.|... +.|.+..+      ++.|....    +...+.+.+. |.|.+|++.|.
T Consensus        31 ~~~~C~~C~v~~~S~-s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~C~~C~~~f~  104 (127)
T 1zu1_A           31 SDTQCKVCSAVLISE-SQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRS-KCCPVCNMTFS  104 (127)
T ss_dssp             CSSEETTTTEECCSH-HHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTT-TEETTTTEECS
T ss_pred             CCCcCcCCCCEeCCH-HHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCC-eEcCCCCCEeC
Confidence            568899999999876 6777777  455432 34444211      23332211    2334566777 99999999999


Q ss_pred             ChhhHHHHHHh
Q psy4272         158 HKHDLKKHVTF  168 (575)
Q Consensus       158 ~~~~L~~H~r~  168 (575)
                      ....|..|...
T Consensus       105 s~~~~~~H~~g  115 (127)
T 1zu1_A          105 SPVVAESHYIG  115 (127)
T ss_dssp             SHHHHHHHHTS
T ss_pred             CHHHHHHHHCC
Confidence            99999999864

>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.42  E-value=0.11  Score=39.89  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=36.0

Q ss_pred             HHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhccc
Q psy4272         335 IVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQ  372 (575)
Q Consensus       335 l~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFq  372 (575)
                      .+.|+++|...+.........|+.+.+|+..+|+.||-
T Consensus        18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa   55 (70)
T 2ys9_A           18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD   55 (70)
T ss_dssp             CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred             chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence            37899999999999999999999999999999999994

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.27  E-value=0.11  Score=36.47  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=13.8

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|+.|++.|.....|+.||+.
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhhh
Confidence            5666666666666666666654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.92  E-value=0.16  Score=35.66  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=19.7

Q ss_pred             CcccccccCccccChhhHHHHhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      ..|.|+.|++.|.....|++||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            458888888888888888888873

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.59  E-value=0.15  Score=44.42  Aligned_cols=28  Identities=14%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhh
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      .+.+.+.|.|.+|++.|.....|..|..
T Consensus        87 ~~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           87 SDGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             ccCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            4556778999999999999999999975

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.42  E-value=0.25  Score=45.04  Aligned_cols=77  Identities=19%  Similarity=0.405  Sum_probs=53.2

Q ss_pred             CCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhhccC
Q psy4272          93 AKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus        93 ~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      .|...+.  ...+..|.. .=..++..|+.|+..+ .+..|..|....-..+. -.|..|+..|.. ..|..|..+ +.|
T Consensus        89 GC~~~~~--~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~-~~C~~C~~~~~~-~~l~~H~~~-~~~  161 (170)
T 3hcs_A           89 GCLHKME--LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQ-VSCDNCAASMAF-EDKEIHDQN-CPL  161 (170)
T ss_dssp             TCCCEEE--GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCE-EECTTTCCEEEG-GGHHHHHTT-CCC
T ss_pred             CCCceec--HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCC-eECCCCCCccCH-HHHHhHHHh-CcC
Confidence            4444333  356777763 2234567899999988 55678999987888888 899999988755 568999987 666


Q ss_pred             cccc
Q psy4272         173 YLDH  176 (575)
Q Consensus       173 ~~~~  176 (575)
                      ...+
T Consensus       162 ~~~~  165 (170)
T 3hcs_A          162 ALEH  165 (170)
T ss_dssp             ----
T ss_pred             hhhh
Confidence            6544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=86.43  E-value=0.29  Score=44.57  Aligned_cols=105  Identities=12%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             CCCCCcchhhcch----hHHHHHhhhcCCCCcccc--cccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHH
Q psy4272          90 PLKAKLSDYENKM----KNVRESIRQKRLAQGLTC--LQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLK  163 (575)
Q Consensus        90 ~C~~C~~~f~~~~----~~L~~H~r~H~~~kp~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~  163 (575)
                      .|+.|...+....    ..+...+    ......|  ..|+..+.. ..|..|.. .-..++ ..|+.|+..+ .+..|.
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i----~~l~v~C~n~GC~~~~~~-~~l~~H~~-~C~~~~-v~C~~C~~~~-~r~~l~  126 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREI----LSLMVKCPNEGCLHKMEL-RHLEDHQA-HCEFAL-MDCPQCQRPF-QKFHIN  126 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHH----HTSEEECCSTTCCCEEEG-GGHHHHHT-TCTTSE-EECTTTCCEE-EGGGHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHH----hhcccCCCCCCCCceecH-hHHHHHHh-cCCcee-eECCCCChHH-HHHHHH
Confidence            6888877665420    1111111    1234567  457776654 45777763 334456 7899999887 566788


Q ss_pred             HHHHhhccCcccchhhhhhhhhcccccCCCCCCCcchhhhhhccChhhhHhhhhhhhhhhcc
Q psy4272         164 KHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHEEIRTH  225 (575)
Q Consensus       164 ~H~r~~H~~~~~~~~~~~~~~~~~t~e~sp~p~~~C~~C~k~F~~~~~l~~H~~th~~~~~~  225 (575)
                      .|... .-..+..                     .|..|+..|.. ..+..|...+.+...+
T Consensus       127 ~H~~~-~C~~r~~---------------------~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          127 IHILK-DCPRRQV---------------------SCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             HHHHH-TCTTCEE---------------------ECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             HHhhh-hCCCCCe---------------------ECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            88864 3333333                     79999887754 5678888777666554

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=81.75  E-value=0.48  Score=38.09  Aligned_cols=26  Identities=38%  Similarity=0.848  Sum_probs=21.3

Q ss_pred             cccccccCccccChhhHHHHhhhhhCCCC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECGKAP  145 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp  145 (575)
                      -..|-+||+.|.   .|++|++.|+|..|
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             ceEecccchhhH---HHHHHHHHccCCCH
Confidence            357999999998   48899999878776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	575
d9anta_	56	a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila	2e-20
d2cuea1	68	a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H	2e-19
d1pufa_	77	a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m	6e-19
d1p7ia_	53	a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel	3e-18
d2e1oa1	57	a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo	3e-18
d2craa1	58	a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (	7e-18
d1jgga_	57	a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (	3e-17
d1bw5a_	66	a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {	5e-17
d1ftta_	68	a.4.1.1 (A:) Thyroid transcription factor 1 homeod	8e-17
d1b72a_	88	a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo	1e-16
d1ig7a_	58	a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu	1e-16
d1fjla_	65	a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila	3e-16
d1s7ea1	50	a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M	1e-15
d1zq3p1	67	a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl	3e-15
d1au7a1	58	a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra	6e-15
d1yz8p1	60	a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo	2e-14
d1le8a_	53	a.4.1.1 (A:) Mating type protein A1 Homeodomain {B	3e-14
d1x2ma1	52	a.4.1.1 (A:8-59) Lag1 longevity assurance homolog	4e-14
d1vnda_	77	a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi	9e-14
d1pufb_	73	a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96	2e-13
d2cufa1	82	a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM	3e-13
d1k61a_	60	a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast	4e-13
d1ocpa_	67	a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus	4e-13
d1uhsa_	72	a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse	5e-13
d1x2na1	62	a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H	6e-13
d2cqxa1	59	a.4.1.1 (A:8-66) LAG1 longevity assurance homolog	1e-12
d1wi3a_	71	a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom	2e-12
d1e3oc1	57	a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (	5e-12
d1wh7a_	80	a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha	3e-11
d2ecba1	76	a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote	7e-11
d1lfba_	78	a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN	3e-10
d2ecca1	76	a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H	3e-08
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	6e-05

>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Antennapedia Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 32/56 (57%), Positives = 39/56 (69%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           RQ Y+ +Q +ELEKEF    YL   RR  ++  L LTERQIKIWFQNRRMK K+ +
Sbjct: 1   RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56

>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (198), Expect = 2e-19
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R R  ++  QI  LEKEF  T+Y     R+ L+ ++ L E +I++WF NRR K +R  
Sbjct: 3   RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60

>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.1 bits (195), Expect = 6e-19
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           + R  Y+ HQ +ELEKEF    YL  DRR  +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 15  KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74

>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Engrailed Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

 Score = 76.4 bits (188), Expect = 3e-18
 Identities = 29/53 (54%), Positives = 34/53 (64%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK 377
           R R  +SS Q+  L++EF    YL   RR+ LS ELGL E QIKIWFQN R K
Sbjct: 1   RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53

>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein prh
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (188), Expect = 3e-18
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           +  +S+ Q +ELEK+F    YL    RK L+K L L+ERQ+K WFQNRR K +R
Sbjct: 4   QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57

>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b13
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 7e-18
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R  YS  Q+ ELE+E+    ++  D+R+ +S    L+ERQI IWFQNRR+K K+
Sbjct: 3   KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58

>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Even-skipped homeodomain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 73.4 bits (180), Expect = 3e-17
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R+R  ++  Q+  LEKEF   NY+   RR  L+ +L L E  IK+WFQNRRMK KR
Sbjct: 1   RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56

>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Insulin gene enhancer protein isl-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.3 bits (180), Expect = 5e-17
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R V +  Q+  L   +       +  ++ L +  GL+ R I++WFQN+R K K+
Sbjct: 5   RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60

>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Thyroid transcription factor 1 homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.7 bits (178), Expect = 8e-17
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           + R ++S  Q+ ELE+ F+   YL +  R+ L+  + LT  Q+KIWFQN R K+KR   D
Sbjct: 4   KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63

Query: 385 MVVE 388
              +
Sbjct: 64  KAAQ 67

>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 298 QIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLS 357
           ++ + PP ++      +            R  +++ Q+ ELEKEF    YL   RR  ++
Sbjct: 8   KVKRNPPKTAKVSEPGLGSP------SGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIA 61

Query: 358 KELGLTERQIKIWFQNRRMKLKRTHPD 384
             L L E Q+KIWFQNRRMK K+   +
Sbjct: 62  ATLELNETQVKIWFQNRRMKQKKRERE 88

>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Msx-1 homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (176), Expect = 1e-16
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R  +++ Q++ LE++FR   YL    R   S  L LTE Q+KIWFQNRR K KR
Sbjct: 2   KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57

>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           R R  +S+ Q+ ELE+ F  T Y     R+ L++   LTE +I++WFQNRR +L++ H  
Sbjct: 4   RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 63

Query: 385 M 385
           +
Sbjct: 64  V 64

>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hepatocyte nuclear factor 6
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
           R V++  Q   L   F+       + +  +S++LGL    +  +F N R
Sbjct: 2   RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50

>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeotic bicoid protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.4 bits (167), Expect = 3e-15
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++S QI ELE+ F    YL + R   LS +L L   Q+KIWF+NRR + K 
Sbjct: 3   RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 58

>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Pit-1 POU homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (164), Expect = 6e-15
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           + R   S      LE+ F   +   S     +++EL L +  +++WF NRR + KR
Sbjct: 1   KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56

>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Pituitary homeobox 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           R R  ++S Q+ +LE  F+   Y     R+ ++    LTE ++++WF+NRR K ++
Sbjct: 3   RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58

>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Mating type protein A1 Homeodomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           +   S      LE+ FR    L S  ++ ++K+ G+T  Q+++WF N+RM+ K
Sbjct: 1   KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53

>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Lag1 longevity assurance homolog 6, LASS6
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (157), Expect = 4e-14
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 331 SSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           ++     LEK F     +    R + LSK+L    R I+ WF+ RR + K +
Sbjct: 1   TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52

>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: VND/NK-2 protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.3 bits (156), Expect = 9e-14
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
           + R +++  Q  ELE+ FR   YL +  R+ L+  + LT  Q+KIWFQN R K KR   +
Sbjct: 11  KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70

>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 325 RFRQVYSSHQIVELEK---EFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R R+ ++      L +         Y   + ++ L+K+ G+T  Q+  WF N+R++ K+ 
Sbjct: 3   RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62

Query: 382 HPDM 385
               
Sbjct: 63  IGKF 66

>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-containing protein 1, HMBOX1 (Flj21616)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 15/71 (21%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------GLTERQIKI 369
             R  +    +  +E  F    Y    +R+ ++                   +T  ++  
Sbjct: 2   GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61

Query: 370 WFQNRRMKLKR 380
           WF NRR ++KR
Sbjct: 62  WFANRRKEIKR 72

>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: mat alpha2 Homeodomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 330 YSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           ++   +  LE  F       YL +   + L K   L+  QIK W  NRR K K 
Sbjct: 5   FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58

>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Oct-3 POU Homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
           R R    +     LE  F         +   ++ +LGL +  +++WF NRR K KR+
Sbjct: 10  RKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 325 RFRQVYSSHQIVELEKEFRLT-NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
                 +  Q+  LE  F     +       +++ E GLTE Q + WF+ R  + +R+ 
Sbjct: 3   EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61

>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 6e-13
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 325 RFRQVYSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
             R V   H    +           Y   D +K ++ +  LT  Q+  WF N R ++ +
Sbjct: 4   NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62

>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: LAG1 longevity assurance homolog 5, LASS5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 325 RFRQVYSSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
           +   V        LEK F     Y    R K LSK+L  + R+I+ WF++RR + K
Sbjct: 3   KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58

>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: DNA-binding protein SATB2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 325 RFRQVYSSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
           R R   S   +  L+        Y   +    LS +L L +  I  +FQN+R  +K + P
Sbjct: 9   RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68

Query: 384 D 384
            
Sbjct: 69  S 69

>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Oct-1 POU Homeodomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           R    ++  V LEK F       S+   +++++L + +  I++WF NRR K KR +
Sbjct: 2   RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57

>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: ZF-HD homeobox protein At4g24660
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 325 RFRQVYSSHQIVELEKEFR----LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           RFR  +++ Q  ++                   +    E G+  + +KIW  N +     
Sbjct: 19  RFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78

>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 7e-11
 Identities = 14/72 (19%), Positives = 29/72 (40%)

Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
           T +  +  ++ Q+  L+  F  ++ L  +    L  +  LT R+I  WF  ++       
Sbjct: 4   TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63

Query: 383 PDMVVEYVKESS 394
             M ++     S
Sbjct: 64  EKMEIDESNAGS 75

>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 21/77 (27%)

Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------------GLTER 365
           R  +       L + +        + R+ L +E                       +TE 
Sbjct: 1   RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60

Query: 366 QIKIWFQNRRMKLKRTH 382
           ++  WF NRR +    H
Sbjct: 61  RVYNWFANRRKEEAFRH 77

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
           +G   +  +  Q+  L+  F    +   +  + L +  GL   +I  WF + R  LK 
Sbjct: 3   SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 122 QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
           QCG+S+       RH          + C  C  + + KH L  H
Sbjct: 7   QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d2craa1	58	Homeobox protein hox-b13 {Human (Homo sapiens) [Ta	99.82
d9anta_	56	Antennapedia Homeodomain {Drosophila melanogaster	99.8
d1ig7a_	58	Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10	99.8
d1jgga_	57	Even-skipped homeodomain {Fruit fly (Drosophila me	99.79
d1zq3p1	67	Homeotic bicoid protein {Fruit fly (Drosophila mel	99.79
d2e1oa1	57	Homeobox protein prh {Human (Homo sapiens) [TaxId:	99.79
d1pufa_	77	Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax	99.78
d1vnda_	77	VND/NK-2 protein {Fruit fly (Drosophila melanogast	99.78
d1ftta_	68	Thyroid transcription factor 1 homeodomain {Rat (R	99.77
d1p7ia_	53	Engrailed Homeodomain {Drosophila melanogaster [Ta	99.77
d1fjla_	65	Paired protein {Fruit fly (Drosophila melanogaster	99.77
d1uhsa_	72	Homeodomain-only protein, Hop {Mouse (Mus musculus	99.76
d2cuea1	68	Paired box protein pax6 {Human (Homo sapiens) [Tax	99.76
d1yz8p1	60	Pituitary homeobox 2 {Human (Homo sapiens) [TaxId:	99.76
d1b72a_	88	Homeobox protein hox-b1 {Human (Homo sapiens) [Tax	99.76
d1bw5a_	66	Insulin gene enhancer protein isl-1 {Rat (Rattus n	99.75
d1ocpa_	67	Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId	99.73
d1au7a1	58	Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta	99.73
d1le8a_	53	Mating type protein A1 Homeodomain {Baker's yeast	99.7
d2cufa1	82	Homeobox-containing protein 1, HMBOX1 (Flj21616) {	99.7
d1wi3a_	71	DNA-binding protein SATB2 {Human (Homo sapiens) [T	99.7
d1e3oc1	57	Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId	99.69
d1wh7a_	80	ZF-HD homeobox protein At4g24660 {Thale cress (Ara	99.68
d1s7ea1	50	Hepatocyte nuclear factor 6 {Mouse (Mus musculus)	99.63
d2ecba1	76	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	99.62
d1pufb_	73	pbx1 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2ecca1	76	Homeobox-leucine zipper protein Homez {Human (Homo	99.59
d1lfba_	78	Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat	99.58
d1x2ma1	52	Lag1 longevity assurance homolog 6, LASS6 {Mouse (	99.57
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.53
d2cqxa1	59	LAG1 longevity assurance homolog 5, LASS5 {Mouse (	99.51
d1k61a_	60	mat alpha2 Homeodomain {Baker's yeast (Saccharomyc	99.48
d1x2na1	62	Homeobox protein pknox1 {Human (Homo sapiens) [Tax	99.45
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.38
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.18
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.12
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.03
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.02
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.95
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.93
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.92
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.9
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.88
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.88
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.87
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.77
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.74
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.65
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.62
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.6
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.59
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.57
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.57
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.52
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.35
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.34
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.32
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.26
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.25
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.22
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.13
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.09
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.97
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.96
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.86
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.79
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.59
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.53
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.26
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.99
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.92
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.85
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.8
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.77
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.71
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.67
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.64
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.49
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.42
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.42
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.41
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.39
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.37
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.33
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.29
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.28
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.96
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.91
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.63
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.53
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.99
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.97
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.94
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.9
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.75
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.64
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.5
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.4
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.28
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.22
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.67
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.6
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.11
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.96
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.64
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.17
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.21
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.11
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.91
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.84
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.58
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.05
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	88.5
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.98
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	86.26
d1hlva1	66	DNA-binding domain of centromere binding protein B	85.94
d1y0jb1	36	U-shaped transcription factor, different fingers {	84.92
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.66
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.2
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	81.43
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	81.2
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	81.06

>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.1e-21  Score=143.92  Aligned_cols=58  Identities=43%  Similarity=0.731  Sum_probs=56.0

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      +||.||.||..|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+||
T Consensus         1 Grr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk   58 (58)
T d2craa1           1 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK   58 (58)
T ss_dssp             CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence            3778999999999999999999999999999999999999999999999999999986

>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Antennapedia Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.80  E-value=1.7e-20  Score=139.16  Aligned_cols=55  Identities=58%  Similarity=0.913  Sum_probs=54.0

Q ss_pred             cccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       327 Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||+
T Consensus         1 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~   55 (56)
T d9anta_           1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE   55 (56)
T ss_dssp             CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence            7999999999999999999999999999999999999999999999999999985

>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Msx-1 homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.5e-20  Score=140.22  Aligned_cols=58  Identities=45%  Similarity=0.733  Sum_probs=56.1

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ||.||.||..|+.+|+..|..++||+..+|++||..|||++.+|+|||||||+|+||.
T Consensus         1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~   58 (58)
T d1ig7a_           1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL   58 (58)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhheeecCcchHhHhccC
Confidence            5789999999999999999999999999999999999999999999999999999983

>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Even-skipped homeodomain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.7e-20  Score=139.38  Aligned_cols=57  Identities=49%  Similarity=0.796  Sum_probs=55.4

Q ss_pred             CCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       325 r~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      |.||.||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||+
T Consensus         1 R~Rt~fT~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk~   57 (57)
T d1jgga_           1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ   57 (57)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhcC
Confidence            679999999999999999999999999999999999999999999999999999974

>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeotic bicoid protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.6e-20  Score=144.17  Aligned_cols=61  Identities=41%  Similarity=0.608  Sum_probs=57.8

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      ||.||+||..|+.+|+..|..++||+..+|.+||..|||++++|+|||||||+|+||....
T Consensus         2 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~~~   62 (67)
T d1zq3p1           2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ   62 (67)
T ss_dssp             SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhhhhh
Confidence            6789999999999999999999999999999999999999999999999999999986543

>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein prh
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-20  Score=138.02  Aligned_cols=57  Identities=47%  Similarity=0.719  Sum_probs=55.4

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      |+.|++||..|+.+|+..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus         1 k~~R~~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk   57 (57)
T d2e1oa1           1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR   57 (57)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence            578999999999999999999999999999999999999999999999999999986

>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.2e-20  Score=146.61  Aligned_cols=64  Identities=52%  Similarity=0.794  Sum_probs=60.0

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       320 ~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+..||.||+||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus        10 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~   73 (77)
T d1pufa_          10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK   73 (77)
T ss_dssp             CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999998654

>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: VND/NK-2 protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=4e-20  Score=147.02  Aligned_cols=66  Identities=38%  Similarity=0.627  Sum_probs=61.3

Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         319 LQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       319 ~~~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      .+.++||.||+||.+|+.+|+..|..++||+..++++||..|||++++|+|||||||+|+||.+..
T Consensus         5 ~p~k~rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~~   70 (77)
T d1vnda_           5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE   70 (77)
T ss_dssp             CSSSSCSSCCCCCTTHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHHhhc
Confidence            346778899999999999999999999999999999999999999999999999999999986643

>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Thyroid transcription factor 1 homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=9.1e-20  Score=141.34  Aligned_cols=63  Identities=40%  Similarity=0.671  Sum_probs=59.5

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcc
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDM  385 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~  385 (575)
                      +||.||.||..|+.+|++.|..++||+..+|.+||..|||++.+|+|||||||+|+|+..+..
T Consensus         2 krr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~~~~   64 (68)
T d1ftta_           2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK   64 (68)
T ss_dssp             CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhcccch
Confidence            478899999999999999999999999999999999999999999999999999999976543

>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Engrailed Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.77  E-value=8.1e-20  Score=134.74  Aligned_cols=53  Identities=55%  Similarity=0.854  Sum_probs=51.8

Q ss_pred             CCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhh
Q psy4272         325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK  377 (575)
Q Consensus       325 r~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak  377 (575)
                      |.||.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||||
T Consensus         1 R~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK   53 (53)
T d1p7ia_           1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK   53 (53)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             CCCccCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence            67999999999999999999999999999999999999999999999999997

>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.1e-19  Score=139.78  Aligned_cols=61  Identities=39%  Similarity=0.676  Sum_probs=58.4

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      ++||.||.||.+|+.+|+..|..++||+..++++||..|||++.+|+|||||||+|+||..
T Consensus         1 k~rr~Rt~ft~~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~~   61 (65)
T d1fjla_           1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH   61 (65)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhcc
Confidence            4688999999999999999999999999999999999999999999999999999999854

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.5e-19  Score=141.16  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=56.4

Q ss_pred             CCCCcccCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      +++.|++||.+|+.+|+..|.. ++||+...|++||..+||++++|+|||||||||+||..
T Consensus         1 g~~~r~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk~~   61 (72)
T d1uhsa_           1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE   61 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence            3678999999999999999986 78999999999999999999999999999999999854

>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-19  Score=140.85  Aligned_cols=61  Identities=38%  Similarity=0.605  Sum_probs=57.9

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      +||.||.||..|+.+|+..|..++||+..+|++||..|||++++|+|||||||+|+|+..+
T Consensus         1 grR~Rt~ft~~Ql~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~   61 (68)
T d2cuea1           1 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK   61 (68)
T ss_dssp             SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhhh
Confidence            3678999999999999999999999999999999999999999999999999999998644

>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Pituitary homeobox 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-19  Score=137.78  Aligned_cols=60  Identities=30%  Similarity=0.565  Sum_probs=57.4

Q ss_pred             CCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       323 ~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      +||.||+||.+|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||.+
T Consensus         1 Qrr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~~   60 (60)
T d1yz8p1           1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE   60 (60)
T ss_dssp             SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHhcC
Confidence            478899999999999999999999999999999999999999999999999999999853

>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-19  Score=146.89  Aligned_cols=63  Identities=43%  Similarity=0.737  Sum_probs=56.2

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+.+|.|+.||..|+.+|+..|..++||+..+|++||..|||++++|+|||||||+|+||..+
T Consensus        25 ~~~kr~Rt~ft~~Ql~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~~~   87 (88)
T d1b72a_          25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER   87 (88)
T ss_dssp             -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHhcc
Confidence            345788999999999999999999999999999999999999999999999999999998654

>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Insulin gene enhancer protein isl-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.9e-19  Score=136.44  Aligned_cols=63  Identities=29%  Similarity=0.405  Sum_probs=59.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCc
Q psy4272         322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD  384 (575)
Q Consensus       322 ~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~  384 (575)
                      +.+|.||.||.+|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|.|+....
T Consensus         2 k~kR~Rt~~t~~Q~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~~~   64 (66)
T d1bw5a_           2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM   64 (66)
T ss_dssp             CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHHHh
Confidence            568999999999999999999999999999999999999999999999999999999987654

>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Oct-3 POU Homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=7.1e-19  Score=135.73  Aligned_cols=61  Identities=26%  Similarity=0.347  Sum_probs=57.9

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ..+||.||.|+..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus         6 ~~~rr~Rt~~t~~q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~   66 (67)
T d1ocpa_           6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS   66 (67)
T ss_dssp             CCSSSCCSSCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred             hccCCCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcC
Confidence            3457889999999999999999999999999999999999999999999999999999874

>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Pit-1 POU homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.5e-18  Score=130.29  Aligned_cols=58  Identities=28%  Similarity=0.412  Sum_probs=55.7

Q ss_pred             CCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcC
Q psy4272         325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       325 r~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~  382 (575)
                      |.||.|+..|+.+|+..|..++||+..++.+||..+||++++|+|||||||+|+||.+
T Consensus         1 r~Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr~k   58 (58)
T d1au7a1           1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK   58 (58)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHhcC
Confidence            5799999999999999999999999999999999999999999999999999999853

>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Mating type protein A1 Homeodomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.6e-18  Score=125.69  Aligned_cols=53  Identities=32%  Similarity=0.552  Sum_probs=51.8

Q ss_pred             cccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       327 Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      ||.||++|+.+|++.|..++||+..++.+||..+||++++|++||||||+|.|
T Consensus         1 Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K   53 (53)
T d1le8a_           1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK   53 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence            79999999999999999999999999999999999999999999999999976

>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-containing protein 1, HMBOX1 (Flj21616)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-18  Score=137.58  Aligned_cols=60  Identities=22%  Similarity=0.388  Sum_probs=56.6

Q ss_pred             CCCcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------CChhhhhhcccchhhhhhhcCC
Q psy4272         324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------LTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~---------------l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ||.|+.||..|+.+||..|..++||+..+|++||..+|               |++.+|+|||||||+|+||+..
T Consensus         1 Rr~R~~ft~~Ql~~LE~~F~~n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~~   75 (82)
T d2cufa1           1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN   75 (82)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhhh
Confidence            68899999999999999999999999999999999875               9999999999999999999654

>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: DNA-binding protein SATB2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.8e-18  Score=133.15  Aligned_cols=61  Identities=25%  Similarity=0.298  Sum_probs=56.8

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFR-LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~-~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      ...+|.|++||.+|+.+|++.|. .++||+..++++||..|||++++|+|||||||+|+||.
T Consensus         5 ~~~~r~R~~~t~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk~   66 (71)
T d1wi3a_           5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS   66 (71)
T ss_dssp             CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhccc
Confidence            34678899999999999999997 48999999999999999999999999999999999874

>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Oct-1 POU Homeodomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.2e-18  Score=125.59  Aligned_cols=56  Identities=30%  Similarity=0.485  Sum_probs=54.5

Q ss_pred             CcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       326 ~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      +||.|+..|+.+|+..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus         1 kRT~~~~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk~   56 (57)
T d1e3oc1           1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI   56 (57)
T ss_dssp             CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcc
Confidence            48999999999999999999999999999999999999999999999999999985

>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: ZF-HD homeobox protein At4g24660
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=1.3e-17  Score=133.48  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         321 CNTGRFRQVYSSHQIVELEKEFRL----TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       321 ~~~rr~Rt~~t~~ql~~L~~~F~~----~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      .++||.||.||..|+.+|+.+|+.    ++||+..++++||.+|||++++|+|||||+|+++|+
T Consensus        15 ~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~   78 (80)
T d1wh7a_          15 GTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS   78 (80)
T ss_dssp             CCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred             cCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence            456789999999999999999986    899999999999999999999999999999998875

>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hepatocyte nuclear factor 6
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.8e-17  Score=118.35  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=49.0

Q ss_pred             CcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchh
Q psy4272         326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR  375 (575)
Q Consensus       326 ~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrR  375 (575)
                      +||.||..|+.+|++.|..++||+..++.+||.+|||++++|+|||||||
T Consensus         1 PRt~ft~~Q~~~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR   50 (50)
T d1s7ea1           1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR   50 (50)
T ss_dssp             CCSCCCHHHHHHHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence            58999999999999999999999999999999999999999999999998

>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-16  Score=126.93  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCCcch
Q psy4272         329 VYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMV  386 (575)
Q Consensus       329 ~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~~~~  386 (575)
                      .+|.+|+.+|+..|..++||+..++++||..|||++++|+|||||||+|.|+......
T Consensus        10 ~~T~~Q~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~~~~~~   67 (76)
T d2ecba1          10 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME   67 (76)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHHhHhhh
Confidence            3589999999999999999999999999999999999999999999999888665443

>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5e-16  Score=122.13  Aligned_cols=60  Identities=25%  Similarity=0.460  Sum_probs=56.0

Q ss_pred             CCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      ||.|+.|+..|+.+|+.+|..   ++||+..++++||..+||++.+|++||||+|+|+|+...
T Consensus         2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~   64 (73)
T d1pufb_           2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG   64 (73)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccch
Confidence            678999999999999999984   889999999999999999999999999999999998654

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.6e-16  Score=122.08  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             CcccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhcCC
Q psy4272         326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP  383 (575)
Q Consensus       326 ~Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~~~  383 (575)
                      .+++||.+|+.+|++.|..++||+..++++||..|||++++|++||||||+|+|+.+.
T Consensus         6 ~~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~~~   63 (76)
T d2ecca1           6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL   63 (76)
T ss_dssp             CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhchH
Confidence            3456899999999999999999999999999999999999999999999999998553

>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.58  E-value=4e-16  Score=123.52  Aligned_cols=56  Identities=23%  Similarity=0.334  Sum_probs=53.3

Q ss_pred             cccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC---------------------CChhhhhhcccchhhhhhhcC
Q psy4272         327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------------LTERQIKIWFQNRRMKLKRTH  382 (575)
Q Consensus       327 Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~V~vWFqNrRak~kk~~  382 (575)
                      |++||+.|+.+|++.|+.++||+..+|++||.+++                     |++.+|++||||||+|.|++.
T Consensus         1 R~~~tp~Ql~~Le~~F~~n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~~   77 (78)
T d1lfba_           1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH   77 (78)
T ss_dssp             CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred             CccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999999999999994                     899999999999999999865

>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Lag1 longevity assurance homolog 6, LASS6
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.9e-16  Score=113.95  Aligned_cols=50  Identities=34%  Similarity=0.428  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhh
Q psy4272         331 SSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR  380 (575)
Q Consensus       331 t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk  380 (575)
                      |.+|..+||..|.. ++||+..++++||..+||++++|+|||||||+|+|+
T Consensus         1 T~~q~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~   51 (52)
T d1x2ma1           1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP   51 (52)
T ss_dssp             SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred             ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence            46799999999987 789999999999999999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-15  Score=111.71  Aligned_cols=53  Identities=28%  Similarity=0.633  Sum_probs=50.2

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccccccChhhHHHHHHhh
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      ||||.| .||+.|..+..|..|+++|+|++| |.|.+||+.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 499999999999999999999999 99999999999999999999883

>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: LAG1 longevity assurance homolog 5, LASS5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.9e-15  Score=113.24  Aligned_cols=56  Identities=36%  Similarity=0.408  Sum_probs=51.6

Q ss_pred             CCCcccCCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL-TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~-~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      .+.|++++.++..+||..|.. ++||+..++++||..+||++++|++||||||+|+|
T Consensus         2 ~k~~~~~k~~~~~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r   58 (59)
T d2cqxa1           2 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK   58 (59)
T ss_dssp             CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCccccHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence            356778888999999999986 68999999999999999999999999999999987

>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: mat alpha2 Homeodomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.6e-14  Score=108.85  Aligned_cols=53  Identities=32%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             cCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHhCCChhhhhhcccchhhhhhhc
Q psy4272         329 VYSSHQIVELEKEFRLT---NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT  381 (575)
Q Consensus       329 ~~t~~ql~~L~~~F~~~---~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~kk~  381 (575)
                      +|+.+|+.+|+..|..+   +||+..++++||..+||+.++|++||||+|+|.|+.
T Consensus         4 Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~~   59 (60)
T d1k61a_           4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI   59 (60)
T ss_dssp             SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhccccccC
Confidence            49999999999999865   699999999999999999999999999999998863

>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=107.13  Aligned_cols=56  Identities=23%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             CCCcccCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHhCCChhhhhhcccchhhhhh
Q psy4272         324 GRFRQVYSSHQIVELEKEFRL---TNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK  379 (575)
Q Consensus       324 rr~Rt~~t~~ql~~L~~~F~~---~~~p~~~~r~~la~~l~l~~~~V~vWFqNrRak~k  379 (575)
                      ||+|+.|+.+++.+|+..|..   ++||+..++.+||..+||+..||++||+|+|+|..
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL   61 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence            566889999999999999985   78999999999999999999999999999998864

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.4e-14  Score=102.69  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             CCCCCCCCCcchhhcchhHHHHHhhhcCCCCcccccccCccccChhhHHHHhhhh
Q psy4272          86 TLPSPLKAKLSDYENKMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus        86 ~~p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      ++||.|. ||+.|... ..|..|+++|+|++||.|.+||+.|.....|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~-~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSH-HHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCH-HHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4799995 99999998 79999999999999999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-12  Score=86.82  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=31.0

Q ss_pred             HHhhhcCCCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       107 ~H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      +|+++|+++|||.|.+|||.|.+.++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4778888888888888888888888888888888876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-11  Score=80.41  Aligned_cols=33  Identities=21%  Similarity=0.520  Sum_probs=27.6

Q ss_pred             hcCCCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         111 QKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       111 ~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      +|+|+|||.|.+|||.|.+++.|.+|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            578888888888888888888888888888876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.4e-11  Score=83.16  Aligned_cols=37  Identities=27%  Similarity=0.717  Sum_probs=34.0

Q ss_pred             CCCcccccccCccccChhhHHHHhh-hhhCCCCCccccc
Q psy4272         114 LAQGLTCLQCGRSYCRPYNLKRHIQ-YECGKAPQFPCLY  151 (575)
Q Consensus       114 ~~kp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~~C~~  151 (575)
                      .+|||+|.+|||.|.+..+|++|++ +|+|+|| |+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC-cCCcC
Confidence            4799999999999999999999976 7999999 99974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.3e-11  Score=80.24  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             HhhhcCCCCcccccccCccccChhhHHHHhhhhhC
Q psy4272         108 SIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       108 H~r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      |.|+|+|+|||.|.+|++.|.++.+|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            55677777777777777777777777777777654

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.1e-11  Score=79.32  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=25.0

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |+|+|+|||.|.+||++|.++..|.+|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4677777777777777777777777777777665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3e-11  Score=81.54  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=34.8

Q ss_pred             HHhhhhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       135 ~H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +|+++|+++|| |+|.+|||.|.+.++|..|+++ |+||
T Consensus         2 rH~~~Ht~ekp-y~C~~CgK~F~~~s~L~~H~r~-HtGE   38 (38)
T d2cota2           2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT-HTGE   38 (38)
T ss_dssp             CCCSCCCCSCS-SBCSSSCCBCSCHHHHHHHHTT-TCCS
T ss_pred             ccCcccCCCCC-EecCCCCceeeCHHHHHHhCcc-CCCC
Confidence            58999999999 9999999999999999999999 7765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.8e-10  Score=75.67  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             cCCCCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         112 KRLAQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       112 H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |+|+|||+|.+|+|.|.++.+|++|+++|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67778888888888888888888888877764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.93  E-value=2e-10  Score=72.25  Aligned_cols=29  Identities=28%  Similarity=0.619  Sum_probs=24.7

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      |||.|.+|||.|.+.++|++|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888888888875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-10  Score=76.87  Aligned_cols=32  Identities=28%  Similarity=0.623  Sum_probs=15.9

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      +|+|||| |+|++|++.|.++++|++|++.+|+
T Consensus         2 ~HTgekP-~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKP-YECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCS-EECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCC-EeCCCCcccccchHHHHHHcccccC
Confidence            4555555 5555555555555555555444343

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.7e-10  Score=73.83  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             hhhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         139 YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       139 ~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +|+|+|| |+|.+|||+|.+.++|..|+++ |++|
T Consensus         1 IHTgekp-y~C~~Cgk~F~~~~~L~~H~r~-HtgE   33 (33)
T d1x6ea1           1 IHSGEKP-YGCVECGKAFSRSSILVQHQRV-HTGE   33 (33)
T ss_dssp             TTTTCCC-EECSSSCCEESSHHHHHHHHHG-GGCS
T ss_pred             CcCCCCC-eeCCCCCCEeCchHHhHhhccc-cCCC
Confidence            6999999 9999999999999999999999 7764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.7e-10  Score=76.29  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             HhhhhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         136 HIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       136 H~r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      |.|+|+|||| |+|.+||+.|.++++|+.|+++ |.
T Consensus         2 h~R~HTgeKP-y~C~~C~k~F~~~~~L~~H~r~-H~   35 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKR-HM   35 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGG-GT
T ss_pred             CCCccCCccC-eEeCCCCCEecCHHHHHHHHhc-Cc
Confidence            7899999999 9999999999999999999999 53

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.3e-10  Score=70.62  Aligned_cols=29  Identities=24%  Similarity=0.594  Sum_probs=24.2

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      |||.|.+|||.|.++++|.+|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.3e-10  Score=70.44  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=23.0

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ||||+|.+|+|.|.++.+|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5788888888888888888888888876

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.3e-10  Score=82.01  Aligned_cols=41  Identities=22%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             hHHHHHhhhcCCCCcccccc--cCccccChhhHHHHhhhhhCCC
Q psy4272         103 KNVRESIRQKRLAQGLTCLQ--CGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       103 ~~L~~H~r~H~~~kp~~C~~--Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      ..+.+|+. |+|++||.|.+  |+|.|.+.++|++|+++|+|+|
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34566774 88999999977  9999999999999999999886

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.2e-10  Score=75.34  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.9

Q ss_pred             hhhhCCCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         138 QYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       138 r~H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      |+|+|+|| |+|.+||++|.++++|+.|+++||.
T Consensus         1 R~HTgekP-y~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCC-EECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCC-EECCCCCCCcCCHhHHHHhCcccCC
Confidence            68999999 9999999999999999999999554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-10  Score=74.57  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=29.7

Q ss_pred             hhcCCCCcccccccCccccChhhHHHHhhhhhC
Q psy4272         110 RQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       110 r~H~~~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      |+|+|+|||+|.+|++.|.++.+|++|++.|.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            589999999999999999999999999865443

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.5e-09  Score=71.84  Aligned_cols=33  Identities=24%  Similarity=0.700  Sum_probs=30.8

Q ss_pred             ccccc--cCccccChhhHHHHhhhhhCCCCCccccc
Q psy4272         118 LTCLQ--CGRSYCRPYNLKRHIQYECGKAPQFPCLY  151 (575)
Q Consensus       118 ~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~~C~~  151 (575)
                      |.|.+  ||+.|.++.+|++|+++|+|+|| |+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCCC
Confidence            78987  99999999999999999999999 99973

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.5e-09  Score=71.22  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             hhCCCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         140 ECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       140 H~gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      |+|+|| |+|.+|+|.|.++.+|++|+++ |+..
T Consensus         2 ~TGekP-y~C~~C~k~F~~~~~L~~H~r~-Ht~~   33 (35)
T d1srka_           2 SSGKRP-FVCRICLSAFTTKANCARHLKV-HTDT   33 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGG-GTSC
T ss_pred             CCCCcc-ccCCCCCCcccChHHHHHHccc-cCCc
Confidence            799999 9999999999999999999999 6654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.4e-09  Score=70.73  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCCCCcccccccccccChhhHHHHHHhhccCcccc
Q psy4272         142 GKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDH  176 (575)
Q Consensus       142 gekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~~~  176 (575)
                      -+|| |+|.+|||.|.+..+|++|++..|++++||
T Consensus         2 ~~Kp-y~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy   35 (39)
T d2epsa1           2 VGKP-YICQSCGKGFSRPDHLNGHIKQVHTSERPH   35 (39)
T ss_dssp             SSCC-EECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CCCC-ccCCCCCCCcCChHHhhccCcCccCCCcCc
Confidence            4789 999999999999999999987559999999

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.3e-09  Score=63.65  Aligned_cols=26  Identities=23%  Similarity=0.646  Sum_probs=18.8

Q ss_pred             CcccccccCccccChhhHHHHhhhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |||+|.+|||.|.+.+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            56777777777777777777777774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.4e-09  Score=65.27  Aligned_cols=28  Identities=36%  Similarity=0.662  Sum_probs=22.8

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhCC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |||.|.+  |||.|.+.++|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.6e-09  Score=65.33  Aligned_cols=28  Identities=25%  Similarity=0.770  Sum_probs=24.1

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhCC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |||.|.+  |||+|.+.++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6888877  888888888888888888886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.8e-09  Score=75.01  Aligned_cols=42  Identities=17%  Similarity=0.473  Sum_probs=36.9

Q ss_pred             hhhHHHHhhhhhCCCCCccccc--ccccccChhhHHHHHHhhccCcc
Q psy4272         130 PYNLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       130 ~~~L~~H~r~H~gekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      +..|.+|++ |+|++| |.|.+  |+|.|.+.++|+.|+++ |++++
T Consensus         4 ~~~l~~h~~-h~gekp-y~C~~~~C~k~F~~~~~L~~H~r~-Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKT-FECLFPGCTKTFKRRYNIRSHIQT-HLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EETTTE-EECCCTTCCCEECSSSSHHHHHHH-HTTTC
T ss_pred             cchhcchhh-ccCCCC-eECCcCCCCccccCchHHHhhccc-ccCCC
Confidence            346778885 999999 99987  99999999999999999 87764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=7.6e-09  Score=64.15  Aligned_cols=28  Identities=25%  Similarity=0.592  Sum_probs=25.9

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      ||| |+|.+|||.|.++++|.+|+++ |+|
T Consensus         1 EKP-y~C~~C~k~F~~~~~L~~H~r~-HTG   28 (28)
T d1a1ia2           1 QKP-FQCRICMRNFSRSDHLTTHIRT-HTG   28 (28)
T ss_dssp             CCC-EECTTTCCEESCHHHHHHHHHH-HHC
T ss_pred             CcC-ccCCCCcCEecccccccccCCC-ccC
Confidence            689 9999999999999999999999 654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=64.96  Aligned_cols=29  Identities=28%  Similarity=0.669  Sum_probs=23.8

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      |||.|++  |||.|.+..+|++|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            5788854  8888888888888888888875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.57  E-value=1.3e-08  Score=63.74  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=26.8

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      || |.|.+|||.|.+.++|++|+++ |+||+
T Consensus         1 kp-~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RS-FVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CC-BCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             Cc-CCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            57 9999999999999999999999 88774

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.4e-08  Score=62.42  Aligned_cols=29  Identities=28%  Similarity=0.465  Sum_probs=26.7

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCcc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      || |.|.+|||.|.++++|.+|+++ |++++
T Consensus         1 Kp-y~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KK-FACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CC-SCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CC-EECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            57 9999999999999999999999 88764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=6.2e-08  Score=60.42  Aligned_cols=27  Identities=33%  Similarity=0.749  Sum_probs=23.0

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      |||.|.+  |+|.|.+..+|++|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788877  88888888888888888886

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8.8e-08  Score=55.00  Aligned_cols=26  Identities=31%  Similarity=0.705  Sum_probs=18.2

Q ss_pred             cccccccCccccChhhHHHHhhhhhC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      |++|++|+|.|+++..|+.|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45677777777777777777777765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=58.51  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=23.6

Q ss_pred             CCCcccccccccccChhhHHHHHHhh
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      || |+|.+|||.|.+.++|..|+|+|
T Consensus         1 KP-y~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KP-YKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CC-EECSSSCCEESSHHHHHHHHHHH
T ss_pred             CC-ccCCCCcCeeccCcccccCccCC
Confidence            57 99999999999999999999993

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.5e-07  Score=60.11  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             CCcccccc--cCccccChhhHHHHhhhhhC
Q psy4272         115 AQGLTCLQ--CGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       115 ~kp~~C~~--Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ||||.|.+  |||.|.+..+|++|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46777776  77777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1e-07  Score=62.77  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             CCCCC--CcchhhcchhHHHHHhhhcCCCCcccccc
Q psy4272          89 SPLKA--KLSDYENKMKNVRESIRQKRLAQGLTCLQ  122 (575)
Q Consensus        89 ~~C~~--C~~~f~~~~~~L~~H~r~H~~~kp~~C~~  122 (575)
                      |.|..  |++.|... .+|++|+++|+|+|||.|++
T Consensus         2 f~C~~~~C~k~F~~~-~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFK-KHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSH-HHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCCh-hHhccccCeeCCCCCEeCCC
Confidence            56776  99999998 79999999999999999974

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-07  Score=57.75  Aligned_cols=26  Identities=27%  Similarity=0.577  Sum_probs=16.7

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhh
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |||.|.+  |||.|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4666665  6666666666666666664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.1e-07  Score=57.64  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=25.6

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      || |+|.+  |||+|.+.++|++|+++ |+||
T Consensus         1 kp-~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KP-HKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CC-CCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CC-eeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            57 99998  99999999999999999 7764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.7e-07  Score=57.42  Aligned_cols=28  Identities=32%  Similarity=0.753  Sum_probs=25.4

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      || |.|.+  |||+|.+.++|++|+|+ |+||
T Consensus         1 kp-~~C~~~gCgk~F~~~~~L~~H~r~-HTGE   30 (30)
T d1ubdc3           1 KP-FQCTFEGCGKRFSLDFNLRTHVRI-HTGD   30 (30)
T ss_dssp             CC-EECCSTTCCCEESCHHHHHHHHHH-HHCC
T ss_pred             CC-ccCCCCCCCceECcHHHcCccccc-cCCC
Confidence            57 99987  99999999999999999 7764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=6.7e-07  Score=53.06  Aligned_cols=26  Identities=31%  Similarity=0.668  Sum_probs=15.4

Q ss_pred             CCcccccccCccccChhhHHHHhhhh
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      +|||.|.+||+.|.+....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35566666666666666666665555

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.1e-07  Score=56.55  Aligned_cols=29  Identities=31%  Similarity=0.665  Sum_probs=25.8

Q ss_pred             CCCcccc--cccccccChhhHHHHHHhhccCcc
Q psy4272         144 APQFPCL--YCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       144 kp~~~C~--~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      || |.|+  .|||+|.+.++|++|+++ |++++
T Consensus         1 kp-f~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RP-FMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CC-CBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             Cc-CCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            57 9996  599999999999999999 88764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=8.1e-07  Score=54.70  Aligned_cols=31  Identities=29%  Similarity=0.742  Sum_probs=28.1

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCCCCc
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKAPQF  147 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~  147 (575)
                      |...|..|||.|....+|.+|...|+|||| |
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp-y   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP-Y   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC-C
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC-C
Confidence            457899999999999999999999999999 7

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2e-06  Score=54.72  Aligned_cols=27  Identities=30%  Similarity=0.586  Sum_probs=24.9

Q ss_pred             CCCCccccc--ccccccChhhHHHHHHhhcc
Q psy4272         143 KAPQFPCLY--CSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       143 ekp~~~C~~--Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      ||| |.|.+  |||.|.+.++|++|+++ |+
T Consensus         1 ErP-~~C~~pgC~k~F~r~~~L~~H~r~-Ht   29 (32)
T d1zfda_           1 DRP-YSCDHPGCDKAFVRNHDLIRHKKS-HQ   29 (32)
T ss_dssp             CCS-BCCCCTTCCCCBSSSHHHHHHHGG-GT
T ss_pred             CcC-eECcCCCCCCeeCCHHHHHHHhhh-cc
Confidence            688 99988  99999999999999999 54

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.5e-06  Score=49.82  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=23.0

Q ss_pred             cccccccccccChhhHHHHHHhhccC
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      ++|++|+|.|++++.|+.|+|. |+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~-htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC-HTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG-CCC
T ss_pred             CccchhhhHhcchhHHHHHhhc-cCC
Confidence            8999999999999999999998 553

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.9e-06  Score=51.04  Aligned_cols=26  Identities=23%  Similarity=0.611  Sum_probs=24.4

Q ss_pred             CCCCcccccccccccChhhHHHHHHhh
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      ||| |.|++||+.|.+....++|.++|
T Consensus         1 EkP-f~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKP-FACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCC-EECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCC-cccchhhhhhhcchhhhhhhhhc
Confidence            688 99999999999999999999984

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.1e-06  Score=51.92  Aligned_cols=25  Identities=24%  Similarity=0.685  Sum_probs=23.1

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhh
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~  169 (575)
                      || |.|++  |||+|.+.++|++|+++|
T Consensus         1 rP-f~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RP-YVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CC-CCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CC-cCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            57 99988  999999999999999993

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=2.1e-06  Score=53.29  Aligned_cols=27  Identities=30%  Similarity=0.757  Sum_probs=24.2

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhhccC
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      || |+|.+  |||+|.+.++|++|+++ |+|
T Consensus         1 Kp-~~C~~~gC~k~F~~~~~L~~H~r~-HtG   29 (29)
T d1a1ia1           1 RP-YACPVESCDRRFSRSADLTRHIRI-HTG   29 (29)
T ss_dssp             CC-EECCSTTCCCEESSHHHHHHHTHH-HHT
T ss_pred             CC-eECCCCCCCcEECchhHhhhhcCc-cCC
Confidence            57 99988  99999999999999999 653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.1e-06  Score=48.56  Aligned_cols=26  Identities=31%  Similarity=0.741  Sum_probs=22.8

Q ss_pred             ccccccCccccChhhHHHHhhhhhCC
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      +.|.+|||.|...+.|++|..+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57899999999999999999999885

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5e-06  Score=49.94  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      +|||.|++|+.+|+++..+.-|.|.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3566666666666666666666666655

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.9e-05  Score=46.61  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=24.3

Q ss_pred             ccccccCccccChhhHHHHhhhhhCCC
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      |.|.+||......+-|+.|+|.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.5e-05  Score=44.95  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=22.3

Q ss_pred             cccccCccccChhhHHHHhhhhhCCC
Q psy4272         119 TCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       119 ~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      .|+.|.|.|..+..|+.|-|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4e-05  Score=45.96  Aligned_cols=28  Identities=25%  Similarity=0.615  Sum_probs=25.2

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhcc
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      ||| |.|++|+.+|.+++.+..|.|.|.+
T Consensus         1 ekp-~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKP-YSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCS-SEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCC-cccchHHHHhhccccceEeeecccC
Confidence            578 9999999999999999999999443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=6.5e-05  Score=44.02  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=17.8

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      ++||+|..|...-...+.|..|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3566666666666666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=7e-05  Score=45.96  Aligned_cols=31  Identities=0%  Similarity=-0.128  Sum_probs=27.8

Q ss_pred             CCCCCCCcchhhcchhHHHHHhhhcCCCCccc
Q psy4272          88 PSPLKAKLSDYENKMKNVRESIRQKRLAQGLT  119 (575)
Q Consensus        88 p~~C~~C~~~f~~~~~~L~~H~r~H~~~kp~~  119 (575)
                      -..|.+||+.|..- .+|.+|...|+++|||.
T Consensus         5 ~~~ce~cgk~frdv-yhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDV-YHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSH-HHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHH-HHHHhhhcccCCCCCCC
Confidence            45799999999988 59999999999999983

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.99  E-value=0.00019  Score=42.30  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=22.9

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhCC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      +||.|.+  |.|.|....+|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5777765  888888888888888888875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=42.93  Aligned_cols=25  Identities=24%  Similarity=0.672  Sum_probs=13.6

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhh
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H  140 (575)
                      |||.|.+  |+|++...+.|++|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            3555554  555555555555555543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.85  E-value=0.0003  Score=39.68  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=13.8

Q ss_pred             ccccccCccccChhhHHHHhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |+|..|.+.|..++.|.+|+|+|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45666666666666666666555

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00024  Score=46.02  Aligned_cols=25  Identities=28%  Similarity=0.697  Sum_probs=16.2

Q ss_pred             hCCCCCcccccccccccChhhHHHHH
Q psy4272         141 CGKAPQFPCLYCSYRARHKHDLKKHV  166 (575)
Q Consensus       141 ~gekp~~~C~~Cgk~F~~~~~L~~H~  166 (575)
                      +|.|| |.|..|+|.|.+++.+.+|.
T Consensus         1 TGiKP-YeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKP-YECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCC-EECSSSCCEESCHHHHHHHH
T ss_pred             CCCCc-eeccchhhhhhhHHHHHHhh
Confidence            35566 66666666666666666664

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.80  E-value=0.00032  Score=41.15  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=16.7

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhh
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H  140 (575)
                      .||+|+.  |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3566654  777777777777776666

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00031  Score=40.74  Aligned_cols=26  Identities=15%  Similarity=0.453  Sum_probs=18.0

Q ss_pred             CcccccccCccccChhhHHHHhhhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |||+|..|...-...+.|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56777777777677777777777664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00047  Score=40.50  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=22.1

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCC
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      +.-|.|..|...|.++-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34577888888888888888888888775

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00032  Score=45.46  Aligned_cols=25  Identities=16%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCCCcccccccCccccChhhHHHHh
Q psy4272         113 RLAQGLTCLQCGRSYCRPYNLKRHI  137 (575)
Q Consensus       113 ~~~kp~~C~~Cgk~F~~~~~L~~H~  137 (575)
                      +|-|||.|.+|+|.|-.+..+.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            5789999999999999999998874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00068  Score=40.06  Aligned_cols=29  Identities=31%  Similarity=0.785  Sum_probs=19.4

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +| |.|..|..+....++|+.|+++.|..+
T Consensus         1 kp-y~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KT-YQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CC-CCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CC-ccccccccccccchhhhhhhhcccccC
Confidence            35 777777766677777777777666543

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00035  Score=40.67  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             cccccccccccChhhHHHHHHhhccCc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +.|..|||.|...+.|++|.-+ |+++
T Consensus         3 hvc~ecgkaf~essklkrh~lv-htge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLV-HTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGG-TSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhc-ccCC
Confidence            6799999999999999999988 7654

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00058  Score=39.91  Aligned_cols=28  Identities=32%  Similarity=0.774  Sum_probs=25.3

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhccC
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      ++| |+|..|...-...+.|..|+|. |+|
T Consensus         1 erp-fkcqlcsy~srnssqltvhlr~-htg   28 (29)
T d2dmda3           1 ERP-FKCQICPYASRNSSQLTVHLRS-HTG   28 (29)
T ss_dssp             CCC-EECSSSSCEESSHHHHHHHHTT-CCS
T ss_pred             CCc-ceeeecccccCCchheEEeeec-ccC
Confidence            578 9999999999999999999999 665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.42  E-value=0.00056  Score=41.28  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=14.6

Q ss_pred             cccccccccccChhhHHHHHHhhccC
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHAA  172 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~~  172 (575)
                      |.|.+|++.|.+++-|.+|...-|.+
T Consensus         2 f~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           2 YPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cccccccchhhHHHHHHHHHHHHhcC
Confidence            55666666666665555555544443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00093  Score=38.25  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             ccccccccccChhhHHHHHHhhccCcc
Q psy4272         148 PCLYCSYRARHKHDLKKHVTFKHAAYL  174 (575)
Q Consensus       148 ~C~~Cgk~F~~~~~L~~H~r~~H~~~~  174 (575)
                      .|+.|.|.|..+..|+.|.|. |+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCCC
Confidence            699999999999999999999 77764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00065  Score=40.64  Aligned_cols=27  Identities=33%  Similarity=0.682  Sum_probs=24.0

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhhcc
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      || |.|.+  |+|++...+.|++|++.+|+
T Consensus         1 KP-Y~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KP-YVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CC-EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CC-eecccCCCCcccCCHHHHHHHHHhhCC
Confidence            57 99987  99999999999999998663

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.39  E-value=0.00058  Score=41.21  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=22.5

Q ss_pred             cccccccCccccChhhHHHHhh-hhhC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQ-YECG  142 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r-~H~g  142 (575)
                      ||.|.+|++.|.++.-|.+|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999964 5655

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.37  E-value=0.00083  Score=43.22  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=17.8

Q ss_pred             CcccccccCccccChhhHHHHhhhhhCCC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECGKA  144 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek  144 (575)
                      +.|.|.+|++.|..-..|--|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            34666666666666666666666665443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00069  Score=40.90  Aligned_cols=26  Identities=12%  Similarity=0.453  Sum_probs=14.4

Q ss_pred             Ccccccc--cCccccChhhHHHHh-hhhh
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHI-QYEC  141 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~-r~H~  141 (575)
                      |||.|.+  |.|.|+..+.-.+|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3555555  555555555555554 5554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.29  E-value=0.00093  Score=37.66  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             cccccccccccChhhHHHHHHhh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      |+|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999983

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0014  Score=38.70  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.0

Q ss_pred             CcccccccCccccChhhHHHHhhhh
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |||.|..|..+....++|+.|+++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhcc
Confidence            6899999999999999999998863

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0013  Score=38.59  Aligned_cols=26  Identities=35%  Similarity=0.623  Sum_probs=24.2

Q ss_pred             cccccccccccChhhHHHHHHhhccCc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      |.|+.||......+-|++|+|. |+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSC
T ss_pred             ccccccCcccCCHHHHHHHHHH-hcCC
Confidence            8999999999999999999999 7765

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.96  E-value=0.0017  Score=38.01  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.2

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhh
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~  169 (575)
                      .| |+|+.  |++.|...+.|++|.++|
T Consensus         2 ~p-y~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LP-YECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CC-EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CC-ccCCccCccccccCHHHHhhhhhcc
Confidence            36 99976  999999999999999983

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0017  Score=37.58  Aligned_cols=25  Identities=32%  Similarity=0.776  Sum_probs=23.4

Q ss_pred             CCCcccccccccccChhhHHHHHHhh
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      || |+|..|...-...+.|+.|+|+|
T Consensus         2 kp-~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KP-YKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CS-EECSSSCCEESSHHHHHHHHHHS
T ss_pred             CC-cccccccchhcchhhHhhhhhcc
Confidence            68 99999999999999999999993

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0032  Score=36.94  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=10.7

Q ss_pred             cccccccCccccChhhHHHHhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      ||.|..|.-.|..+.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            3445555555555555554443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0025  Score=37.38  Aligned_cols=22  Identities=32%  Similarity=0.842  Sum_probs=21.2

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|..|.-.|..+.+|..||+.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            9999999999999999999986

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0058  Score=35.94  Aligned_cols=25  Identities=36%  Similarity=0.826  Sum_probs=16.0

Q ss_pred             cccccccccccChhhHHHHHHhhcc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKHA  171 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H~  171 (575)
                      |+|.+|.-.-.+.++|..|++..|.
T Consensus         3 FkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           3 FKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             cccceecccccCcchHHHHHHHHcc
Confidence            6666666666666666666665443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.97  E-value=0.0055  Score=39.30  Aligned_cols=28  Identities=21%  Similarity=0.529  Sum_probs=24.6

Q ss_pred             CCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +. |+|.+|++.|.....|--|++. |..+
T Consensus         4 r~-~~C~~C~k~F~s~qALGGH~~~-Hr~~   31 (37)
T d1njqa_           4 RS-YTCSFCKREFRSAQALGGHMNV-HRRD   31 (37)
T ss_dssp             SS-EECTTTCCEESSHHHHHHHHHT-TCCS
T ss_pred             Cc-cCCCCCCCccCCcccccchHhh-hcch
Confidence            45 9999999999999999999998 5543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0052  Score=36.98  Aligned_cols=26  Identities=31%  Similarity=0.513  Sum_probs=22.6

Q ss_pred             CCCccccc--ccccccChhhHHHHH-Hhhcc
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHV-TFKHA  171 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~-r~~H~  171 (575)
                      || |.|.+  |.|.|+..+...+|+ |+ |.
T Consensus         1 kP-Y~C~~~gC~KafsNsSDraKHqnRT-Hs   29 (31)
T d2glia4           1 KP-YMCEHEGCSKAFSNASDRAKHQNRT-HS   29 (31)
T ss_dssp             CC-EECCSTTCCCEESSSSTTHHHHHHT-TC
T ss_pred             CC-ccccCCChhhhhcchhhhhhhcccc-cc
Confidence            57 99987  999999999999997 66 54

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.90  E-value=0.0072  Score=35.35  Aligned_cols=29  Identities=24%  Similarity=0.510  Sum_probs=25.3

Q ss_pred             CCCCcccccccccccChhhHHHHHHhhccCc
Q psy4272         143 KAPQFPCLYCSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       143 ekp~~~C~~Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +.- |.|..|...|.++-.|+.||.. |+|+
T Consensus         2 eqv-ftcs~cqe~f~rrmelr~hmvs-htge   30 (30)
T d2dlqa3           2 EQV-FTCSVCQETFRRRMELRLHMVS-HTGE   30 (30)
T ss_dssp             CCC-EECSSSCCEESSHHHHHHHHHH-HSSS
T ss_pred             cce-EEeHHHHHHHHHHHhheeeeec-ccCC
Confidence            445 9999999999999999999998 6653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.75  E-value=0.0082  Score=34.54  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=11.4

Q ss_pred             cccccccccccChhhHHHHHH
Q psy4272         147 FPCLYCSYRARHKHDLKKHVT  167 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r  167 (575)
                      |+|..|||.+.++.+|..|..
T Consensus         2 f~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           2 FECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             CccccchhhhhhHhHHHHHHH
Confidence            555555555555555555543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.64  E-value=0.007  Score=34.12  Aligned_cols=24  Identities=29%  Similarity=0.761  Sum_probs=16.7

Q ss_pred             cccccccccccChhhHHHHHHhhc
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFKH  170 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~H  170 (575)
                      |.|++|-|.|.+++++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777776644

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.011  Score=37.66  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=11.7

Q ss_pred             CCCCccc--ccccccccChhhHHHHHHh
Q psy4272         143 KAPQFPC--LYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       143 ekp~~~C--~~Cgk~F~~~~~L~~H~r~  168 (575)
                      +|| |.|  +-|+.+|.....|..|...
T Consensus         4 dkP-F~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           4 DKP-FLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCC-EECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCc-eecCCCCccccccchHHHHHhhhh
Confidence            344 555  2245555555555544444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.012  Score=33.82  Aligned_cols=22  Identities=36%  Similarity=0.750  Sum_probs=20.2

Q ss_pred             cccccccCccccChhhHHHHhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      ||+|..|||.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999863

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.28  E-value=0.0098  Score=34.89  Aligned_cols=28  Identities=32%  Similarity=0.612  Sum_probs=23.7

Q ss_pred             CCCccccc--ccccccChhhHHHHHHhhccCc
Q psy4272         144 APQFPCLY--CSYRARHKHDLKKHVTFKHAAY  173 (575)
Q Consensus       144 kp~~~C~~--Cgk~F~~~~~L~~H~r~~H~~~  173 (575)
                      +| |.|.+  |.|.|.....|.+|..+ |+++
T Consensus         1 ~p-fpc~~egc~kgf~tlhhltrhs~t-htge   30 (30)
T d1tf3a2           1 KP-FPCKEEGCEKGFTSLHHLTRHSLT-HTGE   30 (30)
T ss_dssp             CS-EECCCSSCCCEESSTTHHHHHHHH-HHTC
T ss_pred             CC-cCcccccccccchhhhhhhhhhcc-ccCC
Confidence            46 88965  99999999999999988 6653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.01  Score=33.33  Aligned_cols=21  Identities=33%  Similarity=0.695  Sum_probs=12.9

Q ss_pred             cccccccccccChhhHHHHHH
Q psy4272         147 FPCLYCSYRARHKHDLKKHVT  167 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r  167 (575)
                      |+|..|...|.++..|+.|+.
T Consensus         3 ykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           3 YKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHH
Confidence            666666666666666666653

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.022  Score=33.44  Aligned_cols=27  Identities=26%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             CcccccccCccccChhhHHHHhhhhhC
Q psy4272         116 QGLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       116 kp~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      +||+|..|.---++.++|..|++.-+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            588999998888888999999875433

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.018  Score=35.75  Aligned_cols=26  Identities=27%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             ccccc--c---CccccChhhHHHHhhhhhCC
Q psy4272         118 LTCLQ--C---GRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       118 ~~C~~--C---gk~F~~~~~L~~H~r~H~ge  143 (575)
                      |.|.+  |   ++.|..+..|..|+|+||||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            55544  4   46799999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.024  Score=36.00  Aligned_cols=29  Identities=17%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             CCCccccc--ccCccccChhhHHHHhhhhhC
Q psy4272         114 LAQGLTCL--QCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       114 ~~kp~~C~--~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      .+|||.|.  -|+.+|....+|..|...|.-
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~m   33 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhee
Confidence            48999995  499999999999999998874

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.96  E-value=0.024  Score=31.78  Aligned_cols=22  Identities=18%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             cccccccCccccChhhHHHHhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      ||+|.-|...|-.+..|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999974

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.026  Score=34.65  Aligned_cols=26  Identities=27%  Similarity=0.758  Sum_probs=20.1

Q ss_pred             cccccccCccccChhhHHHHhhhhhC
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYECG  142 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~g  142 (575)
                      .|.|..|||.|.++..+.+|-..-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47888888888888888888765544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.046  Score=31.56  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=17.5

Q ss_pred             cccccccCccccChhhHHHHhhhhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |-+|..|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3467777777777777777777764

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.21  E-value=0.055  Score=30.90  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=15.8

Q ss_pred             ccccc--cCccccChhhHHHHhhhhh
Q psy4272         118 LTCLQ--CGRSYCRPYNLKRHIQYEC  141 (575)
Q Consensus       118 ~~C~~--Cgk~F~~~~~L~~H~r~H~  141 (575)
                      |.|..  |+|.|+....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            44543  7777777777777776665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.054  Score=36.03  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=12.6

Q ss_pred             ccccccCccccChhhHHHHhhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQYE  140 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~H  140 (575)
                      |.|-.|||.|.....|+.|...|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            45555555555555555555444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.91  E-value=0.056  Score=30.32  Aligned_cols=22  Identities=23%  Similarity=0.573  Sum_probs=17.1

Q ss_pred             ccccccCccccChhhHHHHhhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      |.|+.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6688888888888888888764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.052  Score=31.22  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=11.7

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|+.|+-...+++.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4555555555555555555544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.041  Score=33.75  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             cccccccccccChhhHHHHHHh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTF  168 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~  168 (575)
                      |.|..|||.|.++..+.+|...
T Consensus         5 fvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhhh
Confidence            8999999999999999999765

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.079  Score=35.23  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             cccccccccccChhhHHHHHHhh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      |.|..|||.|.....|+.|...|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            78999999999999999999884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.11  Score=29.82  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             cccccccCccccChhhHHHHhhh
Q psy4272         117 GLTCLQCGRSYCRPYNLKRHIQY  139 (575)
Q Consensus       117 p~~C~~Cgk~F~~~~~L~~H~r~  139 (575)
                      .|.|+.|+....+++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            38899999999999999999875

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.98  E-value=0.16  Score=30.06  Aligned_cols=28  Identities=25%  Similarity=0.685  Sum_probs=20.0

Q ss_pred             Ccccccc--cCccccChhhHHHHhhhhhCC
Q psy4272         116 QGLTCLQ--CGRSYCRPYNLKRHIQYECGK  143 (575)
Q Consensus       116 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge  143 (575)
                      |.|.|..  |+..|...-.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            3466654  777777777777777777775

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.26  E-value=0.17  Score=29.17  Aligned_cols=23  Identities=30%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             cccccccccccChhhHHHHHHhh
Q psy4272         147 FPCLYCSYRARHKHDLKKHVTFK  169 (575)
Q Consensus       147 ~~C~~Cgk~F~~~~~L~~H~r~~  169 (575)
                      -+|..|......+..|+.|.|+|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            68999999999999999999994

>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.56  Score=33.94  Aligned_cols=46  Identities=11%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             cccCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCChhhhhhcccchh
Q psy4272         327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR  375 (575)
Q Consensus       327 Rt~~t~~ql~~L~~~F~~~~~p~~~~r~~la~~l~l~~~~V~vWFqNrR  375 (575)
                      |..+|-.+-..+-..|+..+...   +.+||..+|++..+|..|.+|+.
T Consensus         5 Rk~LT~~eK~~ii~~~e~g~k~s---q~eIA~~fGv~~STvs~IlKnK~   50 (66)
T d1hlva1           5 RRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKR   50 (66)
T ss_dssp             SCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHH
T ss_pred             cccCCHHHHHHHHHHHHcCCcch---HHHHHHHhCCChhHHHHHHHHHH
Confidence            44688888888888888876443   56799999999999999998853

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.92  E-value=0.27  Score=29.67  Aligned_cols=21  Identities=33%  Similarity=0.844  Sum_probs=15.6

Q ss_pred             ccccccCccccChhhHHHHhh
Q psy4272         118 LTCLQCGRSYCRPYNLKRHIQ  138 (575)
Q Consensus       118 ~~C~~Cgk~F~~~~~L~~H~r  138 (575)
                      |.|.-||-+|+..+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            777777777777777777754

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.18  Score=31.09  Aligned_cols=24  Identities=8%  Similarity=0.112  Sum_probs=19.5

Q ss_pred             CCCCcchhhcchhHHHHHhhhcCCC
Q psy4272          91 LKAKLSDYENKMKNVRESIRQKRLA  115 (575)
Q Consensus        91 C~~C~~~f~~~~~~L~~H~r~H~~~  115 (575)
                      |..-++.|..+ ..|..|+|+||||
T Consensus        10 C~R~~~pf~a~-YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQ-YMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSH-HHHHHHTHHHHCC
T ss_pred             CCCCCCcchhH-HHHHHHHhhcCCC
Confidence            56666778777 5899999999986

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.18  Score=36.15  Aligned_cols=36  Identities=14%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccc
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSY  154 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk  154 (575)
                      ..-|+|+.|++.|.....+.-   .-...-. |.|.+|+-
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~-F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGT-FRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTE-EBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCe-EEecCCCC
Confidence            345777777777776655432   2112223 77777764

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.43  E-value=0.24  Score=31.35  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccc
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSY  154 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk  154 (575)
                      ++-|.|.+||.             +|.|+.| -+|++||.
T Consensus         3 ~~~~vC~vCGy-------------i~~g~~P-e~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGY-------------IHKGEDF-EKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCC-------------EEESSCC-SBCTTTCC
T ss_pred             CCEEECCCCCC-------------EeeCCCC-CcCCCCCC
Confidence            45689999984             4567767 89999985

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.20  E-value=0.53  Score=27.24  Aligned_cols=17  Identities=18%  Similarity=0.440  Sum_probs=10.3

Q ss_pred             ccccccChhhHHHHHHh
Q psy4272         152 CSYRARHKHDLKKHVTF  168 (575)
Q Consensus       152 Cgk~F~~~~~L~~H~r~  168 (575)
                      |||.|+.+..|+.|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            66666666666655554

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.06  E-value=0.24  Score=31.60  Aligned_cols=26  Identities=27%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             CCcccccccCccccChhhHHHHhhhhhCCCCCcccccccc
Q psy4272         115 AQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSY  154 (575)
Q Consensus       115 ~kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~~C~~Cgk  154 (575)
                      ++-|.|.+||..             |.|+.| -+|++||.
T Consensus         3 ~~~~~C~vCG~i-------------~~g~~P-~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYT-------------AVDEAP-EYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCE-------------EESCCC-SBCTTTCC
T ss_pred             CcEEECCCCCCE-------------ecCCCC-CcCCCCCC
Confidence            355889999843             567777 89999985