Psyllid ID: psy4339
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | 2.2.26 [Sep-21-2011] | |||||||
| Q9DAX9 | 585 | Amyloid protein-binding p | yes | N/A | 0.778 | 0.403 | 0.546 | 1e-67 | |
| Q92624 | 585 | Amyloid protein-binding p | yes | N/A | 0.778 | 0.403 | 0.546 | 1e-67 | |
| A5HK05 | 585 | Amyloid protein-binding p | yes | N/A | 0.778 | 0.403 | 0.546 | 2e-67 | |
| P46824 | 508 | Kinesin light chain OS=Dr | no | N/A | 0.323 | 0.192 | 0.373 | 4e-07 | |
| P46825 | 571 | Kinesin light chain OS=Do | N/A | N/A | 0.303 | 0.161 | 0.387 | 1e-06 | |
| Q5PQM2 | 619 | Kinesin light chain 4 OS= | no | N/A | 0.303 | 0.148 | 0.387 | 3e-06 | |
| Q9NSK0 | 619 | Kinesin light chain 4 OS= | no | N/A | 0.303 | 0.148 | 0.397 | 3e-06 | |
| Q2HJJ0 | 616 | Kinesin light chain 4 OS= | no | N/A | 0.303 | 0.149 | 0.397 | 3e-06 | |
| Q9DBS5 | 619 | Kinesin light chain 4 OS= | no | N/A | 0.303 | 0.148 | 0.387 | 5e-06 | |
| A0JM23 | 1311 | Nephrocystin-3 OS=Xenopus | no | N/A | 0.379 | 0.087 | 0.296 | 6e-06 |
| >sp|Q9DAX9|APBP2_MOUSE Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 178/256 (69%), Gaps = 20/256 (7%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
EKLY RSI I KLF YS GLEYDYRGLI +Y + N+EK
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYS-----------------GLEYDYRGLIKLYNSIGNYEK 532
Query: 255 MTEFTNKLSEWKILRE 270
+ E+ N LS W LR+
Sbjct: 533 VFEYHNVLSNWNRLRD 548
|
May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface. Mus musculus (taxid: 10090) |
| >sp|Q92624|APBP2_HUMAN Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 178/256 (69%), Gaps = 20/256 (7%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
EKLY RSI I KLF YS GLEYDYRGLI +Y + N+EK
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYS-----------------GLEYDYRGLIKLYNSIGNYEK 532
Query: 255 MTEFTNKLSEWKILRE 270
+ E+ N LS W LR+
Sbjct: 533 VFEYHNVLSNWNRLRD 548
|
May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface. Homo sapiens (taxid: 9606) |
| >sp|A5HK05|APBP2_RAT Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 177/256 (69%), Gaps = 20/256 (7%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
EKLY RSI I KLF YSG LEYDYRGLI +Y N+EK
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSG-----------------LEYDYRGLIKLYNSTGNYEK 532
Query: 255 MTEFTNKLSEWKILRE 270
+ E+ N LS W LR+
Sbjct: 533 VFEYHNVLSNWNRLRD 548
|
May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface. Rattus norvegicus (taxid: 10116) |
| >sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEA L +AL + K GEN+ A N+ LY K+ +AE + +A+ I+EKV
Sbjct: 244 YKEAANLLNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKV 303
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
LGKD +V + +LA L + +Y + EK Y R+++I
Sbjct: 304 LGKDHPDVAKQLNNLA-LLCQNQGKYDEVEKYYQRALDI 341
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Drosophila melanogaster (taxid: 7227) |
| >sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YK+AE L + ALV+ K G+++ AK N+ L Q+ K++E ER +A+ I +K
Sbjct: 320 YKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVERYYQRALEIYQKE 379
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG DD V + +LAS Y +Y +AE LY
Sbjct: 380 LGPDDPNVAKTKNNLASAY-LKQGKYKQAEILY 411
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Loligo pealeii (taxid: 1051067) |
| >sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEAE L Q AL + K G ++ AK N+ L Q+ K++ ER +A+AI E+
Sbjct: 311 YKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYERQ 370
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG D+ V + +LAS Y +Y +AE LY
Sbjct: 371 LGPDNPNVARTKNNLASCY-LKQGKYSEAETLY 402
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEAE L Q AL + K G N+ AK N+ L Q+ K++ ER +A+AI E
Sbjct: 311 YKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQ 370
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG D+ V + +LAS Y +Y +AE LY
Sbjct: 371 LGPDNPNVARTKNNLASCY-LKQGKYAEAETLY 402
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEAE L Q AL + K G N+ AK N+ L Q+ K++ ER +A+AI E
Sbjct: 308 YKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQ 367
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG D+ V + +LAS Y +Y +AE LY
Sbjct: 368 LGPDNPNVARTKNNLASCY-LKQGKYAEAETLY 399
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Bos taurus (taxid: 9913) |
| >sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEAE L Q AL + K G ++ AK N+ L Q+ K++ ER +A+AI E
Sbjct: 311 YKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYESQ 370
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG D+ V + +LAS Y +Y +AE LY
Sbjct: 371 LGPDNPNVARTKNNLASCY-LKQGKYSEAEALY 402
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Mus musculus (taxid: 10090) |
| >sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170
LL + AL L G++ A+ +G LY + AE +++ ++E+VLG D
Sbjct: 1056 LLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADH 1115
Query: 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228
+ S+ +LA+LYN +Y KAE+LY R+++I + S + L Y + L +
Sbjct: 1116 PDCAQSINNLAALYN-EKKQYDKAEELYERALDIRR--RALSPDHPSLAYTVKHLAVL 1170
|
Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements. Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| 307191798 | 581 | Amyloid protein-binding protein 2 [Harpe | 0.867 | 0.452 | 0.540 | 2e-74 | |
| 332021351 | 583 | Amyloid protein-binding protein 2 [Acrom | 0.867 | 0.451 | 0.533 | 3e-73 | |
| 322803214 | 575 | hypothetical protein SINV_04037 [Solenop | 0.904 | 0.476 | 0.520 | 6e-72 | |
| 307177160 | 581 | Amyloid protein-binding protein 2 [Campo | 0.867 | 0.452 | 0.529 | 2e-71 | |
| 189240307 | 525 | PREDICTED: similar to amyloid beta precu | 0.854 | 0.493 | 0.506 | 3e-69 | |
| 195340329 | 602 | GM12501 [Drosophila sechellia] gi|194130 | 0.861 | 0.433 | 0.498 | 4e-69 | |
| 270012373 | 569 | hypothetical protein TcasGA2_TC006517 [T | 0.854 | 0.455 | 0.506 | 4e-69 | |
| 405968124 | 574 | Amyloid protein-binding protein 2 [Crass | 0.798 | 0.421 | 0.549 | 6e-69 | |
| 18857963 | 686 | protein interacting with APP tail-1, iso | 0.861 | 0.380 | 0.498 | 9e-69 | |
| 442615319 | 685 | protein interacting with APP tail-1, iso | 0.861 | 0.381 | 0.5 | 1e-68 |
| >gi|307191798|gb|EFN75236.1| Amyloid protein-binding protein 2 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 198/285 (69%), Gaps = 22/285 (7%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG NL VA+A ++LAYALYV EYSSG+F E+ HA AI + LLP NHL
Sbjct: 317 ALDIRKAIFGKTNLHVALAHEDLAYALYVYEYSSGKFDEASDHAGLAIDIIEKLLPANHL 376
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKALILEEIA+D S L ++E LH +AL L+ FGE NVQTAKHY
Sbjct: 377 MLASAKRVKALILEEIAIDNASTPLSEQSLLLKSECLHLSALQLAKTAFGEKNVQTAKHY 436
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQSM+KF EAE M LKAI+IKE++LG +DYEVGLS+GHLASLYN+HM Y AE
Sbjct: 437 GNLGRLYQSMRKFQEAEAMHLKAISIKEELLGPEDYEVGLSIGHLASLYNFHMNRYRDAE 496
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
KLY+RSI I +LKLF SYS GLEYDYRGL+HVY L++FEK+
Sbjct: 497 KLYYRSIAI--SLKLFGKSYS-----------------GLEYDYRGLLHVYSKLDDFEKI 537
Query: 256 TEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYAL 300
E+T+ L+ WK LR+ + L+E + ID K +P+ + ++++
Sbjct: 538 LEYTDTLTHWKELRDKHALSE-DPPIDLQKRPQPISAILTLFFSM 581
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021351|gb|EGI61725.1| Amyloid protein-binding protein 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 195/285 (68%), Gaps = 22/285 (7%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG NL VA+A ++LAYALYV+EYSSGRF ++ HA AI + LP NHL
Sbjct: 319 ALDIRRTIFGRTNLHVALAHEDLAYALYVHEYSSGRFDDASEHAGIAIDIMERHLPPNHL 378
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA R+KALILEEIA+D S L ++E LH +AL +S FGE NVQTAKHY
Sbjct: 379 MLASARRIKALILEEIAIDNASTPLSEQNLLLKSECLHLSALEMSKTAFGERNVQTAKHY 438
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQSM+KF EAE M LKAI IKE++LG +DYEVGLS+GHLASLYN+HM Y AE
Sbjct: 439 GNLGRLYQSMRKFQEAEMMHLKAIGIKEELLGPEDYEVGLSIGHLASLYNFHMNRYRDAE 498
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
KLY RSI I +LKLF YS GLEYDYRGL+HVY LE++EK+
Sbjct: 499 KLYRRSIAI--SLKLFGEGYS-----------------GLEYDYRGLLHVYNKLEDYEKI 539
Query: 256 TEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYAL 300
+E+T+ L+ WK LR+ + +E E ID K +P+ M ++++
Sbjct: 540 SEYTDTLNHWKELRDKHAQSE-EPPIDVQKRPQPIANVMNVFFSM 583
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322803214|gb|EFZ23235.1| hypothetical protein SINV_04037 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/296 (52%), Positives = 198/296 (66%), Gaps = 22/296 (7%)
Query: 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQ 66
LL S+ + AL +++ +FG NLQVA+A ++LAYALYV+EYSSGRF ++ HA AI
Sbjct: 300 LLNFDSISNSTALDIRRTIFGRTNLQVALAHEDLAYALYVHEYSSGRFDDASDHAGIAID 359
Query: 67 TFKNLLPENHLLLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHF 124
+ LP NHL+L SA R+KALILEEIA+D S L ++E LH +AL +S F
Sbjct: 360 IMERHLPPNHLMLASARRIKALILEEIAIDNASTPLSEQSLLLKSECLHLSALEMSKTAF 419
Query: 125 GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184
GE NV TAKHYGN+GRLYQSM+KF EAE M LKAI IKE++LG DYEVGLS+GHLASLY
Sbjct: 420 GERNVLTAKHYGNLGRLYQSMRKFQEAEAMHLKAIGIKEELLGPYDYEVGLSIGHLASLY 479
Query: 185 NYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIH 244
N+HM Y AEKLY RSI I +LKLF YS GLEYDYRGL+H
Sbjct: 480 NFHMNRYRDAEKLYHRSIAI--SLKLFGKGYS-----------------GLEYDYRGLLH 520
Query: 245 VYECLENFEKMTEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYAL 300
VY L+++EK+ E+T+ L+ WK LR+ + +E E ID K +P+ M ++++
Sbjct: 521 VYNKLDDYEKILEYTDILNHWKELRDKHAQSE-EPPIDVQKRPQPIANVMNVFFSM 575
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177160|gb|EFN66393.1| Amyloid protein-binding protein 2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 195/285 (68%), Gaps = 22/285 (7%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG NL VA+A ++LAYALYV EYSSG+F E+ HA AI + LLP HL
Sbjct: 317 ALDIRRAIFGKTNLHVALAHEDLAYALYVYEYSSGKFDEASDHAGIAIDIMEKLLPPYHL 376
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKALILEEIA+D S L ++E LH +AL L+ FGE NVQTAKHY
Sbjct: 377 MLASAKRVKALILEEIAIDNASTPLSEQNLLLKSECLHLSALHLAKTAFGERNVQTAKHY 436
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQSM+KF+EAE M LKAI IKE++LG +DYEVGLS+GHLASLYN+HM Y AE
Sbjct: 437 GNLGRLYQSMRKFEEAEAMHLKAIRIKEELLGPEDYEVGLSIGHLASLYNFHMNRYRDAE 496
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
KLY+RSI I +LKLF SYS GLEYDYRGL+HVY L+ +EK+
Sbjct: 497 KLYYRSIAI--SLKLFGKSYS-----------------GLEYDYRGLLHVYNKLDEYEKI 537
Query: 256 TEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYAL 300
E+T+ L+ WK LR+ + +E + ID K +P+ + ++++
Sbjct: 538 LEYTDTLNHWKELRDKHAQSE-DPPIDVQKRPQPIANIINVFFSM 581
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189240307|ref|XP_973950.2| PREDICTED: similar to amyloid beta precursor protein (cytoplasmic tail) binding protein 2 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 198/288 (68%), Gaps = 29/288 (10%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
+L+++ +F N+ +A+A +++AYALYVNEYSSGRF +R +A+++I+ + +LP NHL
Sbjct: 263 SLQIRMDVFEKNNIHLALAHEDMAYALYVNEYSSGRFYAARENADRSIRLMERILPNNHL 322
Query: 78 LLTSAHRVKALILEEIALD----SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133
+L SA RVKALILEEIALD +N + ++ EAE LH+ AL LS K FGE NVQTAK
Sbjct: 323 MLASAKRVKALILEEIALDMREGNNSHLQEKYLNEAEELHRTALELSGKAFGEKNVQTAK 382
Query: 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193
HYGN+GRLYQSM+++++AE+M LKAIAIKE++LG DYEVGLS+GHLASLYNYHM +H
Sbjct: 383 HYGNLGRLYQSMRQYEQAEKMHLKAIAIKEELLGSADYEVGLSIGHLASLYNYHMKRHHD 442
Query: 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFE 253
AEKLY RS+EI NL LF +YS GLEYDYRGLI+VY L +
Sbjct: 443 AEKLYMRSMEI--NLNLFGETYS-----------------GLEYDYRGLINVYSKLCDQS 483
Query: 254 KMTEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYALC 301
+ +T K+ +W +LR ++P H++ PL E + K+ +C
Sbjct: 484 NVVLYTLKMRDWSLLRAQ---SKPPAHVE---EILPLKEIIEKFSRMC 525
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195340329|ref|XP_002036766.1| GM12501 [Drosophila sechellia] gi|194130882|gb|EDW52925.1| GM12501 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 197/291 (67%), Gaps = 30/291 (10%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG+ N VAIA ++L+YA YV+EYS+G F+ ++ H +KA+ ++L+P NHL
Sbjct: 319 ALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVNIMQHLVPSNHL 378
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKAL+LEEIALD ++ + ++E LH AL+LSL+ FGE NVQTAKHY
Sbjct: 379 MLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHNFALILSLQVFGEVNVQTAKHY 438
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQ+M +F+EAERM KAI IK ++LG DYEVGLS+GHLASLYNY M +Y AE
Sbjct: 439 GNLGRLYQTMNRFEEAERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAE 498
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
+LY RSI+I +L+LF SY SGLEYDY GL HVYE L NFEK
Sbjct: 499 QLYMRSIDI--SLRLFGNSY-----------------SGLEYDYLGLCHVYETLHNFEKY 539
Query: 256 TEFTNKLSEWKILR----ETNELNEPECHIDYAKPSEPLGETMAKYYALCS 302
++ NKL W++LR N+ + P +DY+ + E KY+++C+
Sbjct: 540 LKYANKLENWQLLRGQNITQNKSSYPAIEVDYS-----IEEVKTKYFSMCA 585
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270012373|gb|EFA08821.1| hypothetical protein TcasGA2_TC006517 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 198/288 (68%), Gaps = 29/288 (10%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
+L+++ +F N+ +A+A +++AYALYVNEYSSGRF +R +A+++I+ + +LP NHL
Sbjct: 307 SLQIRMDVFEKNNIHLALAHEDMAYALYVNEYSSGRFYAARENADRSIRLMERILPNNHL 366
Query: 78 LLTSAHRVKALILEEIALD----SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133
+L SA RVKALILEEIALD +N + ++ EAE LH+ AL LS K FGE NVQTAK
Sbjct: 367 MLASAKRVKALILEEIALDMREGNNSHLQEKYLNEAEELHRTALELSGKAFGEKNVQTAK 426
Query: 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193
HYGN+GRLYQSM+++++AE+M LKAIAIKE++LG DYEVGLS+GHLASLYNYHM +H
Sbjct: 427 HYGNLGRLYQSMRQYEQAEKMHLKAIAIKEELLGSADYEVGLSIGHLASLYNYHMKRHHD 486
Query: 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFE 253
AEKLY RS+EI NL LF +YS GLEYDYRGLI+VY L +
Sbjct: 487 AEKLYMRSMEI--NLNLFGETYS-----------------GLEYDYRGLINVYSKLCDQS 527
Query: 254 KMTEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGETMAKYYALC 301
+ +T K+ +W +LR ++P H++ PL E + K+ +C
Sbjct: 528 NVVLYTLKMRDWSLLRAQ---SKPPAHVE---EILPLKEIIEKFSRMC 569
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405968124|gb|EKC33224.1| Amyloid protein-binding protein 2 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/262 (54%), Positives = 180/262 (68%), Gaps = 20/262 (7%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q+AL ++Q +FG NL VAI ++LAYA YV EYSSGRF ++R HAEKAI+ +LPE+
Sbjct: 311 QMALGIRQSVFGGRNLYVAIGHEDLAYASYVQEYSSGRFNDAREHAEKAIEILSYILPED 370
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL+S+ RVKALILEEIALDS ++ + +EA+ LH +L L+ K FGENNVQTAKH
Sbjct: 371 HLLLSSSKRVKALILEEIALDSLSKEAKEKNLQEAQELHLQSLALARKAFGENNVQTAKH 430
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSMQ+++EAE M LKAI IKE++LGKDDYEV LSVGHLASLYNY M ++ +A
Sbjct: 431 YGNLGRLYQSMQRYEEAEEMHLKAIEIKERLLGKDDYEVALSVGHLASLYNYDMEKFAEA 490
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
EKLY RSI I KLF YS GLEYDYRGL+ +Y N
Sbjct: 491 EKLYLRSIAIGK--KLFGEGYS-----------------GLEYDYRGLLKLYRTTNNLAM 531
Query: 255 MTEFTNKLSEWKILRETNELNE 276
+ + L +W +R+ N E
Sbjct: 532 ADHYHDILHQWNTIRDINNAAE 553
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|18857963|ref|NP_572328.1| protein interacting with APP tail-1, isoform A [Drosophila melanogaster] gi|442615321|ref|NP_001259286.1| protein interacting with APP tail-1, isoform C [Drosophila melanogaster] gi|7290728|gb|AAF46174.1| protein interacting with APP tail-1, isoform A [Drosophila melanogaster] gi|16197839|gb|AAL13563.1| GH10889p [Drosophila melanogaster] gi|220945344|gb|ACL85215.1| Pat1-PA [synthetic construct] gi|220955158|gb|ACL90122.1| Pat1-PA [synthetic construct] gi|440216485|gb|AGB95131.1| protein interacting with APP tail-1, isoform C [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 198/291 (68%), Gaps = 30/291 (10%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG+ N VAIA ++L+YA YV+EYS+G F+ ++ H +KA+ ++L+P NHL
Sbjct: 402 ALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVNIMQHLVPSNHL 461
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKAL+LEEIALD ++ + ++E LH AL+LSL+ FGE NVQTAKHY
Sbjct: 462 MLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHNFALLLSLQVFGEVNVQTAKHY 521
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQ+M +F+EAERM KAI IK ++LG DYEVGLS+GHLASLYNY M +Y AE
Sbjct: 522 GNLGRLYQTMNRFEEAERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAE 581
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
+LY RSI+I +L+LF SY SGLEYDY GL HVYE L NFEK
Sbjct: 582 QLYMRSIDI--SLRLFGNSY-----------------SGLEYDYLGLCHVYETLHNFEKY 622
Query: 256 TEFTNKLSEWKILR----ETNELNEPECHIDYAKPSEPLGETMAKYYALCS 302
++ +KL W++LR N+ + P +DY+ + E AKY+++C+
Sbjct: 623 LKYAHKLENWQMLRGQNLTQNKSSYPAIEVDYS-----IEEVKAKYFSMCA 668
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442615319|ref|NP_001259285.1| protein interacting with APP tail-1, isoform B [Drosophila melanogaster] gi|440216484|gb|AGB95130.1| protein interacting with APP tail-1, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/290 (50%), Positives = 196/290 (67%), Gaps = 29/290 (10%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG+ N VAIA ++L+YA YV+EYS+G F+ ++ H +KA+ ++L+P NHL
Sbjct: 402 ALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVNIMQHLVPSNHL 461
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKAL+LEEIALD ++ + ++E LH AL+LSL+ FGE NVQTAKHY
Sbjct: 462 MLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHNFALLLSLQVFGEVNVQTAKHY 521
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQ+M +F+EAERM KAI IK ++LG DYEVGLS+GHLASLYNY M +Y AE
Sbjct: 522 GNLGRLYQTMNRFEEAERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAE 581
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255
+LY RSI+I +L+LF SY SGLEYDY GL HVYE L NFEK
Sbjct: 582 QLYMRSIDI--SLRLFGNSY-----------------SGLEYDYLGLCHVYETLHNFEKY 622
Query: 256 TEFTNKLSEWKILRETNELNE---PECHIDYAKPSEPLGETMAKYYALCS 302
++ +KL W++LR N P +DY+ + E AKY+++C+
Sbjct: 623 LKYAHKLENWQMLRGQNLTQNSSYPAIEVDYS-----IEEVKAKYFSMCA 667
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| FB|FBgn0029878 | 686 | Pat1 "Protein interacting with | 0.679 | 0.300 | 0.571 | 1.4e-74 | |
| RGD|1306488 | 585 | Appbp2 "amyloid beta precursor | 0.775 | 0.401 | 0.540 | 7.1e-61 | |
| UNIPROTKB|E1B7N1 | 585 | APPBP2 "Uncharacterized protei | 0.775 | 0.401 | 0.540 | 1.5e-60 | |
| MGI|MGI:1914134 | 585 | Appbp2 "amyloid beta precursor | 0.775 | 0.401 | 0.540 | 1.5e-60 | |
| UNIPROTKB|Q92624 | 585 | APPBP2 "Amyloid protein-bindin | 0.775 | 0.401 | 0.540 | 1.5e-60 | |
| UNIPROTKB|F1S207 | 541 | APPBP2 "Uncharacterized protei | 0.775 | 0.434 | 0.540 | 1.5e-60 | |
| UNIPROTKB|E2RDQ9 | 585 | APPBP2 "Uncharacterized protei | 0.775 | 0.401 | 0.540 | 1.5e-60 | |
| UNIPROTKB|Q5ZLJ2 | 586 | APPBP2 "Uncharacterized protei | 0.742 | 0.383 | 0.560 | 1.5e-60 | |
| UNIPROTKB|H7C4M1 | 159 | KLC4 "Kinesin light chain 4" [ | 0.303 | 0.578 | 0.397 | 4.7e-09 | |
| FB|FBgn0010235 | 508 | Klc "Kinesin light chain" [Dro | 0.498 | 0.297 | 0.294 | 6.6e-08 |
| FB|FBgn0029878 Pat1 "Protein interacting with APP tail-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 120/210 (57%), Positives = 159/210 (75%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ +FG+ N VAIA ++L+YA YV+EYS+G F+ ++ H +KA+ ++L+P NHL
Sbjct: 402 ALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVNIMQHLVPSNHL 461
Query: 78 LLTSAHRVKALILEEIALD--SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135
+L SA RVKAL+LEEIALD ++ + ++E LH AL+LSL+ FGE NVQTAKHY
Sbjct: 462 MLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHNFALLLSLQVFGEVNVQTAKHY 521
Query: 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
GN+GRLYQ+M +F+EAERM KAI IK ++LG DYEVGLS+GHLASLYNY M +Y AE
Sbjct: 522 GNLGRLYQTMNRFEEAERMHKKAIKIKSELLGHFDYEVGLSIGHLASLYNYQMKKYRDAE 581
Query: 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
+LY RSI+I+ L+LF SYSGLEY Y L
Sbjct: 582 QLYMRSIDIS--LRLFGNSYSGLEYDYLGL 609
|
|
| RGD|1306488 Appbp2 "amyloid beta precursor protein (cytoplasmic tail) binding protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 132/244 (54%), Positives = 175/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL++++ G +Y + + L N+
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNST--G---NYEKVFEYHNVLSNWN 544
Query: 254 KMTE 257
++ +
Sbjct: 545 RLRD 548
|
|
| UNIPROTKB|E1B7N1 APPBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 132/244 (54%), Positives = 174/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL+++ G +Y + + L N+
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSI--G---NYEKVFEYHNVLSNWN 544
Query: 254 KMTE 257
++ +
Sbjct: 545 RLRD 548
|
|
| MGI|MGI:1914134 Appbp2 "amyloid beta precursor protein (cytoplasmic tail) binding protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 132/244 (54%), Positives = 174/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL+++ G +Y + + L N+
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSI--G---NYEKVFEYHNVLSNWN 544
Query: 254 KMTE 257
++ +
Sbjct: 545 RLRD 548
|
|
| UNIPROTKB|Q92624 APPBP2 "Amyloid protein-binding protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 132/244 (54%), Positives = 174/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL+++ G +Y + + L N+
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSI--G---NYEKVFEYHNVLSNWN 544
Query: 254 KMTE 257
++ +
Sbjct: 545 RLRD 548
|
|
| UNIPROTKB|F1S207 APPBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 132/244 (54%), Positives = 174/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 268 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 327
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 328 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 387
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 388 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 447
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL+++ G +Y + + L N+
Sbjct: 448 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSI--G---NYEKVFEYHNVLSNWN 500
Query: 254 KMTE 257
++ +
Sbjct: 501 RLRD 504
|
|
| UNIPROTKB|E2RDQ9 APPBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 132/244 (54%), Positives = 174/244 (71%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 312 QAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 371
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 372 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 431
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 432 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 491
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSASYSGLEYDYRGLIHVYECLENFE 253
EKLY RSI I KLF YSGLEY YR L KL+++ G +Y + + L N+
Sbjct: 492 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSI--G---NYEKVFEYHNVLSNWN 544
Query: 254 KMTE 257
++ +
Sbjct: 545 RLRD 548
|
|
| UNIPROTKB|Q5ZLJ2 APPBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 130/232 (56%), Positives = 171/232 (73%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
Q AL ++Q +FG +N+ VA A ++LAY+ YV++YSSG+F + HAE+AI ++LPE+
Sbjct: 313 QTALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPED 372
Query: 76 HLLLTSAHRVKALILEEIALDS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134
HLLL S+ RVKALILEEIA+D N+ + +EA LH ++L L+ K FGE NVQTAKH
Sbjct: 373 HLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKH 432
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YGN+GRLYQSM+KF EAE M +KAI IKE++LG++DYEV LSVGHLASLYNY M +Y A
Sbjct: 433 YGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENA 492
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYRDL-KLFSA--SYSGLEYDYRGLI 243
EKLY RSI I KLF YSGLEY YR L KL+++ +Y + ++Y ++
Sbjct: 493 EKLYLRSIAIGK--KLFGEGYSGLEYDYRGLIKLYNSVGNYEKV-FEYHNIL 541
|
|
| UNIPROTKB|H7C4M1 KLC4 "Kinesin light chain 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/93 (39%), Positives = 50/93 (53%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
YKEAE L Q AL + K G N+ AK N+ L Q+ K++ ER +A+AI E
Sbjct: 20 YKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQ 79
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198
LG D+ V + +LAS Y +Y +AE LY
Sbjct: 80 LGPDNPNVARTKNNLASCY-LKQGKYAEAETLY 111
|
|
| FB|FBgn0010235 Klc "Kinesin light chain" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 48/163 (29%), Positives = 84/163 (51%)
Query: 46 VNEYSS-GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ 104
V +Y+S GR+ + ++A++ + +H + + + AL+ D N+
Sbjct: 193 VIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYR----DQNK----- 243
Query: 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164
YKEA L +AL + K GEN+ A N+ LY K+ +AE + +A+ I+EK
Sbjct: 244 -YKEAANLLNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREK 302
Query: 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
VLGKD +V + +LA L + +Y + EK Y R+++I ++
Sbjct: 303 VLGKDHPDVAKQLNNLALLCQ-NQGKYDEVEKYYQRALDIYES 344
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9DAX9 | APBP2_MOUSE | No assigned EC number | 0.5468 | 0.7788 | 0.4034 | yes | N/A |
| Q92624 | APBP2_HUMAN | No assigned EC number | 0.5468 | 0.7788 | 0.4034 | yes | N/A |
| A5HK05 | APBP2_RAT | No assigned EC number | 0.5468 | 0.7788 | 0.4034 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 303 | |||
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 1e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-05 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169
TA N+ R ++ +++EAE + +A+AI+ +VLG D
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39
|
Length = 42 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164
Y EA L + AL L + GE++ +TA+ N+ RLY ++ +DEA KA+A++E
Sbjct: 21 YDEALELLEKALEL-ARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-05
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189
A N+ + + + +DEA + KA+ + LG+D E ++ +LA LY +
Sbjct: 3 DLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLY-LALG 60
Query: 190 EYHKAEKLYFRSIEINDN 207
+Y +A + +++ + +
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| KOG1840|consensus | 508 | 99.97 | ||
| KOG1840|consensus | 508 | 99.95 | ||
| KOG4626|consensus | 966 | 99.92 | ||
| KOG4626|consensus | 966 | 99.91 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG1126|consensus | 638 | 99.77 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.73 | |
| KOG1126|consensus | 638 | 99.72 | ||
| KOG1130|consensus | 639 | 99.72 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.7 | |
| KOG1155|consensus | 559 | 99.7 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.67 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.65 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.64 | |
| KOG1125|consensus | 579 | 99.63 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.63 | |
| KOG1155|consensus | 559 | 99.63 | ||
| KOG1130|consensus | 639 | 99.61 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.61 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.61 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.61 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.6 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.59 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.59 | |
| KOG1173|consensus | 611 | 99.56 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.55 | |
| KOG0547|consensus | 606 | 99.54 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG1129|consensus | 478 | 99.48 | ||
| KOG2003|consensus | 840 | 99.47 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.44 | |
| KOG1173|consensus | 611 | 99.43 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.41 | |
| KOG1941|consensus | 518 | 99.37 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.35 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.33 | |
| KOG2002|consensus | 1018 | 99.32 | ||
| KOG0548|consensus | 539 | 99.31 | ||
| KOG0547|consensus | 606 | 99.31 | ||
| KOG2002|consensus | 1018 | 99.3 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.24 | |
| KOG1125|consensus | 579 | 99.24 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.24 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.24 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.23 | |
| KOG2003|consensus | 840 | 99.23 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.22 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.2 | |
| KOG0553|consensus | 304 | 99.18 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.17 | |
| KOG0553|consensus | 304 | 99.17 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.15 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.14 | |
| KOG1941|consensus | 518 | 99.14 | ||
| KOG1129|consensus | 478 | 99.14 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.13 | |
| KOG2076|consensus | 895 | 99.13 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.12 | |
| KOG1839|consensus | 1236 | 99.12 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG1839|consensus | 1236 | 99.09 | ||
| KOG0624|consensus | 504 | 99.08 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.08 | |
| KOG0548|consensus | 539 | 99.07 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.04 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.03 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.0 | |
| KOG0550|consensus | 486 | 99.0 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.99 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.99 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG0550|consensus | 486 | 98.98 | ||
| KOG4162|consensus | 799 | 98.98 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.97 | |
| KOG1174|consensus | 564 | 98.96 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.95 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.93 | |
| KOG2076|consensus | 895 | 98.91 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.9 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.9 | |
| KOG0624|consensus | 504 | 98.89 | ||
| KOG0543|consensus | 397 | 98.89 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.86 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.86 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.86 | |
| KOG1585|consensus | 308 | 98.86 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.85 | |
| KOG1128|consensus | 777 | 98.85 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.84 | |
| KOG2376|consensus | 652 | 98.82 | ||
| KOG1174|consensus | 564 | 98.82 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.79 | |
| KOG2376|consensus | 652 | 98.77 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.76 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.73 | |
| KOG1156|consensus | 700 | 98.73 | ||
| KOG4234|consensus | 271 | 98.72 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| KOG3060|consensus | 289 | 98.69 | ||
| KOG1127|consensus | 1238 | 98.68 | ||
| KOG0543|consensus | 397 | 98.68 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.64 | |
| KOG3785|consensus | 557 | 98.63 | ||
| KOG1585|consensus | 308 | 98.63 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.62 | |
| KOG1586|consensus | 288 | 98.6 | ||
| KOG4162|consensus | 799 | 98.59 | ||
| KOG3060|consensus | 289 | 98.58 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.58 | |
| KOG1128|consensus | 777 | 98.57 | ||
| KOG1156|consensus | 700 | 98.57 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.57 | |
| KOG1586|consensus | 288 | 98.57 | ||
| KOG4340|consensus | 459 | 98.53 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| KOG4555|consensus | 175 | 98.49 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.49 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.48 | |
| KOG0495|consensus | 913 | 98.48 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| KOG0495|consensus | 913 | 98.45 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.45 | |
| KOG4555|consensus | 175 | 98.45 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.44 | |
| KOG1127|consensus | 1238 | 98.43 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.4 | |
| KOG3081|consensus | 299 | 98.4 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.33 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| KOG2300|consensus | 629 | 98.3 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.23 | |
| KOG4234|consensus | 271 | 98.21 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.16 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.14 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.14 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.11 | |
| KOG3785|consensus | 557 | 98.1 | ||
| KOG4648|consensus | 536 | 98.1 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.07 | |
| KOG2300|consensus | 629 | 98.02 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 98.0 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.96 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.96 | |
| KOG4642|consensus | 284 | 97.95 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.94 | |
| KOG4340|consensus | 459 | 97.94 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.94 | |
| KOG4648|consensus | 536 | 97.92 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.91 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.91 | |
| KOG3617|consensus | 1416 | 97.9 | ||
| KOG1464|consensus | 440 | 97.89 | ||
| KOG2796|consensus | 366 | 97.87 | ||
| KOG3616|consensus | 1636 | 97.85 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.84 | |
| KOG3617|consensus | 1416 | 97.82 | ||
| KOG4642|consensus | 284 | 97.81 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.8 | |
| KOG2796|consensus | 366 | 97.79 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.78 | |
| KOG1070|consensus | 1710 | 97.77 | ||
| KOG2047|consensus | 835 | 97.77 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.71 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.7 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.7 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.68 | |
| KOG0551|consensus | 390 | 97.62 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.62 | |
| KOG0545|consensus | 329 | 97.6 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.6 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.59 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.57 | |
| KOG2047|consensus | 835 | 97.56 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.48 | |
| KOG1915|consensus | 677 | 97.41 | ||
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.38 | |
| KOG0545|consensus | 329 | 97.36 | ||
| KOG0551|consensus | 390 | 97.35 | ||
| KOG2610|consensus | 491 | 97.34 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.34 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.29 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.22 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.2 | |
| KOG1915|consensus | 677 | 97.19 | ||
| KOG2610|consensus | 491 | 97.16 | ||
| KOG3081|consensus | 299 | 97.14 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.13 | |
| KOG1464|consensus | 440 | 97.09 | ||
| KOG3616|consensus | 1636 | 97.02 | ||
| KOG1070|consensus | 1710 | 96.91 | ||
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 96.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.89 | |
| KOG2471|consensus | 696 | 96.83 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| KOG1550|consensus | 552 | 96.64 | ||
| KOG2471|consensus | 696 | 96.59 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.57 | |
| KOG2053|consensus | 932 | 96.46 | ||
| KOG2041|consensus | 1189 | 96.44 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 96.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.34 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.3 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 96.29 | |
| KOG1463|consensus | 411 | 96.26 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.25 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.22 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 96.15 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 96.11 | |
| KOG0376|consensus | 476 | 96.1 | ||
| KOG0376|consensus | 476 | 95.93 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.87 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 95.76 | |
| KOG4814|consensus | 872 | 95.61 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.57 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.55 | |
| KOG1308|consensus | 377 | 95.53 | ||
| KOG2041|consensus | 1189 | 95.48 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.48 | |
| KOG4507|consensus | 886 | 95.47 | ||
| KOG2053|consensus | 932 | 95.44 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 95.3 | |
| KOG0508|consensus | 615 | 95.19 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.11 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.86 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.85 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.78 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.73 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.7 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.46 | |
| KOG2114|consensus | 933 | 94.4 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.34 | |
| KOG1550|consensus | 552 | 94.27 | ||
| KOG1308|consensus | 377 | 94.23 | ||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.22 | |
| KOG3364|consensus | 149 | 93.93 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.76 | |
| KOG2581|consensus | 493 | 93.65 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.36 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 93.2 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.14 | |
| KOG2561|consensus | 568 | 93.06 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.01 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.89 | |
| KOG0686|consensus | 466 | 92.85 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.61 | |
| KOG0686|consensus | 466 | 92.58 | ||
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.37 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 92.35 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 92.09 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.08 | |
| KOG0985|consensus | 1666 | 92.04 | ||
| KOG4507|consensus | 886 | 91.98 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.92 | |
| KOG4814|consensus | 872 | 91.55 | ||
| KOG3364|consensus | 149 | 91.42 | ||
| KOG0508|consensus | 615 | 91.12 | ||
| KOG0687|consensus | 393 | 91.12 | ||
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 91.09 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 90.84 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.48 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 90.13 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 89.95 | |
| KOG3783|consensus | 546 | 89.87 | ||
| KOG3783|consensus | 546 | 89.74 | ||
| KOG4014|consensus | 248 | 89.73 | ||
| KOG1538|consensus | 1081 | 89.67 | ||
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.86 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.45 | |
| KOG3824|consensus | 472 | 88.33 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 88.13 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 87.97 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 87.58 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.57 | |
| PF12309 | 371 | KBP_C: KIF-1 binding protein C terminal; InterPro: | 87.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.89 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 86.67 | |
| PF12309 | 371 | KBP_C: KIF-1 binding protein C terminal; InterPro: | 86.38 | |
| KOG4563|consensus | 400 | 86.34 | ||
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 86.24 | |
| KOG3824|consensus | 472 | 86.18 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.14 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 86.08 | |
| PF05053 | 618 | Menin: Menin; InterPro: IPR007747 MEN1, the gene r | 85.48 | |
| cd02679 | 79 | MIT_spastin MIT: domain contained within Microtubu | 85.38 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 85.18 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 85.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.98 | |
| KOG4521|consensus | 1480 | 84.75 | ||
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 84.66 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.42 | |
| KOG1497|consensus | 399 | 84.15 | ||
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 83.99 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.88 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 83.82 | |
| KOG0687|consensus | 393 | 83.31 | ||
| KOG0985|consensus | 1666 | 82.97 | ||
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 82.8 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.25 | |
| KOG3807|consensus | 556 | 82.02 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.0 | |
| cd02679 | 79 | MIT_spastin MIT: domain contained within Microtubu | 81.95 | |
| KOG4563|consensus | 400 | 81.43 | ||
| KOG1463|consensus | 411 | 81.35 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 81.06 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 80.74 | |
| KOG0890|consensus | 2382 | 80.63 | ||
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 80.55 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.27 |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=214.28 Aligned_cols=259 Identities=23% Similarity=0.270 Sum_probs=231.6
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 2 RQKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 2 ~~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
..-++-++.|+.+++.|+++.++..|.++|..+.....+|..| ..+++|++|+..|++|+.+.+..+|++||..+.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y----~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY----RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3456789999999999999999999999999999999999655 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++.+|| .+|...|+|++|..++++|+++.++..+..++.+...+.+++.++..++++++|+.++++++++
T Consensus 285 ~l~nLa----------~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 285 TLNNLA----------VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHH----------HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 999999 7779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-----hhhhhhhhhhhhhhH--------------
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-----LKLFSASYSGLEYHY-------------- 222 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~l~~~~-------------- 222 (303)
....+|.+++.++..+.++|.+|. .+|++++|.+++++|+.+... ++.++..+++++..+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999999999996 999999999999999999863 455666666664222
Q ss_pred HHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4339 223 RDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNELNEPE 278 (303)
Q Consensus 223 ~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 278 (303)
++. +.+|+++|++...+.+||.+|..+|++++|+++.+.+..|++. .++..+|
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~---~~~~~~~ 489 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ---RLGTASP 489 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---cCCCCCc
Confidence 221 6678999999999999999999999999999999888555544 4454444
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=190.12 Aligned_cols=221 Identities=24% Similarity=0.302 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
.........+..+..+..+|....+..+||..| ..+|+|++|+..++.|+++..+..|.++|.++....++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y----~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a---- 248 (508)
T KOG1840|consen 177 IEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMY----AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA---- 248 (508)
T ss_pred chhhHHHHHHHHHhcccCCchHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH----
Confidence 344455566666777888999999999999766 799999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
..|..++++++|+..|++|+.+.+...|+++|.++.++.+||..|...|+|++|..++++|++|.++..+..++
T Consensus 249 ------~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 249 ------LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.+...+.+++.++. .++++++|+.++++++++.. ..++..++.++..+.+||.+|..+|+
T Consensus 323 ~v~~~l~~~~~~~~-~~~~~Eea~~l~q~al~i~~-------------------~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 323 EVAAQLSELAAILQ-SMNEYEEAKKLLQKALKIYL-------------------DAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHH-------------------hhccccchHHHHHHHHHHHHHHHhcc
Confidence 99999999999998 99999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHH
Q psy4339 252 FEKMTEF-TNKLSEWK 266 (303)
Q Consensus 252 ~~~A~~~-~~~~~~~~ 266 (303)
+++|.++ .+++.+.+
T Consensus 383 ~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILR 398 (508)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999995 45554433
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=178.41 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=179.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...+++|...|.+|+.+ .|..+.++.++|.+|| .+|..+-|++.|++++++ +|....+++
T Consensus 265 ~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYy----eqG~ldlAI~~Ykral~~--------~P~F~~Ay~ 324 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYY----EQGLLDLAIDTYKRALEL--------QPNFPDAYN 324 (966)
T ss_pred HhcchHHHHHHHHHHhc--------CCcchhhccceEEEEe----ccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence 35688999999999987 6778899999997774 999999999999999987 677889999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
|+| +.+...|+..+|+.+|.+|+.+. |..+.+.+|||++|..+|.+++|..+|.++++..
T Consensus 325 Nla----------nALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-- 384 (966)
T KOG4626|consen 325 NLA----------NALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-- 384 (966)
T ss_pred HHH----------HHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--
Confidence 999 66689999999999999999973 4456788999999999999999999999999875
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHH-------HHhhh---cccccc
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR-------DLKLF---SASYSG 234 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~-------a~~~~---~~~~~~ 234 (303)
|..+.+++|||.+|. .+|++++|+.+|++++.|.| .++.++++++.-++ |++.+ ..-.|.
T Consensus 385 ------p~~aaa~nNLa~i~k-qqgnl~~Ai~~YkealrI~P---~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 385 ------PEFAAAHNNLASIYK-QQGNLDDAIMCYKEALRIKP---TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred ------hhhhhhhhhHHHHHH-hcccHHHHHHHHHHHHhcCc---hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 888899999999998 99999999999999999987 77777877765553 33222 234778
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+.+..+||.+|...|+..+|+. |.+++
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999 66666
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=178.06 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+.++.+||++| ...+.|++|+.+|.+|+.. .|..+.++.|+| .+|..+|..+-|+
T Consensus 249 P~f~dAYiNLGnV~----ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla----------~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 249 PNFLDAYINLGNVY----KEARIFDRAVSCYLRALNL--------RPNHAVAHGNLA----------CIYYEQGLLDLAI 306 (966)
T ss_pred CcchHHHhhHHHHH----HHHhcchHHHHHHHHHHhc--------CCcchhhccceE----------EEEeccccHHHHH
Confidence 44444555555444 3445555555555554443 333344444444 5668888899999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..|++|+++ +|....+++|||..+-..|+..+|+.+|.+|+.+. |..+.+++|||.+|. ++|+
T Consensus 307 ~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~-E~~~ 369 (966)
T KOG4626|consen 307 DTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYR-EQGK 369 (966)
T ss_pred HHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHH-Hhcc
Confidence 999998885 56677899999999999999999999999999876 556778999999998 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------hhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHH-HH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLE-------YHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTE-FT 259 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~-------~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~ 259 (303)
+++|..+|++++++.| .++.+.++|+ .+.+|+..+. .-.|..+.++.++|.+|..+|+...|+. |.
T Consensus 370 ~e~A~~ly~~al~v~p---~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFP---EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHhhCh---hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 9999999999999887 5555555554 4445553332 3367899999999999999999999999 55
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+++
T Consensus 447 rAI 449 (966)
T KOG4626|consen 447 RAI 449 (966)
T ss_pred HHH
Confidence 655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=150.67 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=131.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+..|+++++.. ...|..+.++..+|.++ ..+|++++|+..+++++++ +|.....+..+
T Consensus 309 ~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~----~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~l 371 (615)
T TIGR00990 309 SYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFK----CLKGKHLEALADLSKSIEL--------DPRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence 5777888888877652 23455666666666554 4667777777777766654 23333344444
Q ss_pred HHHHHHHh--------------hh----------hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q psy4339 87 ALILEEIA--------------LD----------SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY 142 (303)
Q Consensus 87 a~~~~~~~--------------~~----------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 142 (303)
|.++...+ +. ..++...|++++|+..|++++++ .|.....+.++|.++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHH
Confidence 42210000 00 04445556666666666666553 233344556666666
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhh-----
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSA----- 213 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~----- 213 (303)
..+|++++|+..+++++... |....++..+|.++. .+|++++|+..|++++.+.++... +..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLL-DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 66666666666666666542 344556777888886 888888888888888877664221 110
Q ss_pred --hhhhhhhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHH
Q psy4339 214 --SYSGLEYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEW 265 (303)
Q Consensus 214 --~~~~l~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~ 265 (303)
.+...+.+.+|...+. ..+|....++..+|.++..+|++++|++++ +++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1111234444443221 234566667889999999999999999954 544443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=148.37 Aligned_cols=198 Identities=15% Similarity=0.041 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+.....+..+|...... ...++|++|+..|+++++.. ...|..+.++..+| .++...|++++|+
T Consensus 288 ~~~~~~~~~l~~~~~e~-~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg----------~~~~~~g~~~eA~ 351 (615)
T TIGR00990 288 EETGNGQLQLGLKSPES-KADESYEEAARAFEKALDLG-----KLGEKEAIALNLRG----------TFKCLKGKHLEAL 351 (615)
T ss_pred cccccchHHHHHHHHHh-hhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHH----------HHHHHcCCHHHHH
Confidence 33344444444433100 35689999999999999862 23567778899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++.+ +|....++..+|.++..+|++++|+.++++++++. |....++..+|.++. ..|+
T Consensus 352 ~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~ 414 (615)
T TIGR00990 352 ADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--------SEDPDIYYHRAQLHF-IKGE 414 (615)
T ss_pred HHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCC
Confidence 999999985 45567789999999999999999999999998763 444567899999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+++|+.+|++++.+.|++. .++.++..++.+.+|+..+ ....|....++..+|.++...|++++|++.++.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999988644 3455566666666665332 234567778899999999999999999995544
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=147.11 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=168.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
..+|..+++|..+|+|+ .-+++++.|+++|++|+.+ +|..+.+|..+| .-+....++|
T Consensus 415 ~~~~~sPesWca~GNcf----SLQkdh~~Aik~f~RAiQl--------dp~faYayTLlG----------hE~~~~ee~d 472 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCF----SLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLG----------HESIATEEFD 472 (638)
T ss_pred hhCCCCcHHHHHhcchh----hhhhHHHHHHHHHHHhhcc--------CCccchhhhhcC----------ChhhhhHHHH
Confidence 45567788999999887 7999999999999999998 677788888889 7778999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
.|..+|++|+.. +|..-.+|+.+|.+|.++++++.|+-+|++|+++- |.....+..+|.++. .
T Consensus 473 ~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~-~ 535 (638)
T KOG1126|consen 473 KAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQH-Q 535 (638)
T ss_pred hHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHH-H
Confidence 999999999996 56778899999999999999999999999999873 777788999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.|+.++|+.++++|+.+.+.+|. -+..+..++...+|+ +.+..-.|+-..++..+|.+|...|+.+.|+..+
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999999999999997763 455666677777776 4445567888889999999999999999999944
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=118.57 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
...+.+...||.-| ...|++..|..-+++|++. +|....++..+| ..|...|+.+.|.
T Consensus 32 ~~aa~arlqLal~Y----L~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A----------~~Yq~~Ge~~~A~ 89 (250)
T COG3063 32 NEAAKARLQLALGY----LQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRA----------HYYQKLGENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCChhhHH
Confidence 34677888899666 6999999999999999998 677778888888 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+.|++|+.+ +|..+.+++|.|.+++.+|+|++|...|++|+.. +..+....++.|+|.|-. +.|+
T Consensus 90 e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal-~~gq 154 (250)
T COG3063 90 ESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCAL-KAGQ 154 (250)
T ss_pred HHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHh-hcCC
Confidence 999999996 5667788999999999999999999999999864 566777889999999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++.|.++|++++.+.++.|.....+.++ +.+-.|. +.+....+..+.++.-...+-...|+.+.|.+|-..+
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999554332222222 1111221 2222222234444554555555666666666655444
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=138.87 Aligned_cols=216 Identities=15% Similarity=0.068 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------------------
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL----------------------- 71 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~----------------------- 71 (303)
+++|+..+.+ +...++.+..++..+|..| +.+++|++|..+|+.+-++..-.
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~Gray----FEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAY----FELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 5678888888 5666778889999999888 59999999999999876442111
Q ss_pred ---CCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 72 ---LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 72 ---~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
+-..+|....++-.+| ++|.-+++++.|+++|++|+.+ +|..+.+|..+|.=+.....+
T Consensus 410 aq~Li~~~~~sPesWca~G----------NcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALG----------NCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHhhCCCCcHHHHHhc----------chhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHH
Confidence 1122333334455555 7889999999999999999996 567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHH
Q psy4339 149 DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRD 224 (303)
Q Consensus 149 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a 224 (303)
|+|..+|++|+.+. |..-.+|+.+|.+|. ++++++.|.-.|++|++|.|.+. .++..+..++...+|
T Consensus 472 d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 472 DKAMKSFRKALGVD--------PRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred HhHHHHHHhhhcCC--------chhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 99999999999764 666789999999998 99999999999999999999754 466777777777777
Q ss_pred Hhhhcc---ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSA---SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+..+.. -+|......+..|.++...+++++|+..++.+
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 754432 25556667899999999999999999865554
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=124.82 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=174.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--------------------cHHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--------------------RFTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--------------------~~~~A~~~~~~a 64 (303)
+++++.|..++.+-+++.+++ .+......++++||++|. ..| .++.|.++|..-
T Consensus 108 ~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYh----akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYH----AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred hcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhh----hcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 578999999999999998876 344567789999998884 333 234466666666
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+++.++. .+......++.++| ++|+-.|+|+.|+...+.-+.+.++. .+....-.++.|+|+++.-
T Consensus 182 L~l~~~l--gDr~aqGRa~GnLG----------NTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 182 LELSEKL--GDRLAQGRAYGNLG----------NTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHh--hhHHhhcchhcccC----------ceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhh
Confidence 6665553 33344677888888 88899999999999999999998875 3445556789999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
+|+++.|.++|+.++.+..+. .+....+...+.||..|. -..++.+|+.++.+-+.|..
T Consensus 248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAq------------------ 306 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQ------------------ 306 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH------------------
Confidence 999999999999999888775 455667889999999996 89999999999999999988
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKILR 269 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~ 269 (303)
+. + +......+++.||..+...|..++|+.|. ..+....++.
T Consensus 307 -eL-~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~ 349 (639)
T KOG1130|consen 307 -EL-E-DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVN 349 (639)
T ss_pred -HH-H-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 32 2 22345678999999999999999999965 3444444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-15 Score=117.68 Aligned_cols=195 Identities=16% Similarity=0.089 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+..+..+..+|.++ ...|++++|+..++++++. +|....++..+| .++...|++++|+
T Consensus 28 ~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la----------~~~~~~~~~~~A~ 85 (234)
T TIGR02521 28 NKAAKIRVQLALGY----LEQGDLEVAKENLDKALEH--------DPDDYLAYLALA----------LYYQQLGELEKAE 85 (234)
T ss_pred CcHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCCHHHHH
Confidence 34566777777656 4777777777777777654 233445666666 5557777777777
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++... |.....+.++|.++...|++++|+.++++++... ..+.....+.++|.++. ..|+
T Consensus 86 ~~~~~al~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~-~~g~ 150 (234)
T TIGR02521 86 DSFRRALTLN--------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCAL-KAGD 150 (234)
T ss_pred HHHHHHHhhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHH-HcCC
Confidence 7777777641 2223456677777777777777777777776531 12333445667777775 7777
Q ss_pred HHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++|..++++++...++++. .+..+...+.+.+|...+. ...|.....+..++.++...|+.++|..+.+.+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777776664332 2233333333333321111 112334455667788888888888888766554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=123.25 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=151.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.=+.|+.+|++|+++ +|....++.-+|.-| ..+++...|+..|++|+++ +|.--.+++.+
T Consensus 345 eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy----vEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGL 404 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY----VEMKNTHAAIESYRRAVDI--------NPRDYRAWYGL 404 (559)
T ss_pred hHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH----HHhcccHHHHHHHHHHHhc--------CchhHHHHhhh
Confidence 346778888888877 677888888899766 6899999999999999988 45556788888
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| ..|...+...-|+-+|++|+.. .|.....+..||.||.+.++.++|+++|.+|+...
T Consensus 405 G----------QaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---- 462 (559)
T KOG1155|consen 405 G----------QAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---- 462 (559)
T ss_pred h----------HHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----
Confidence 9 6667888888899999999885 23445567889999999999999999999998753
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+ ....++..||.+|. ..++..+|..+|++.++... .-|...+.+..+..-||.-+
T Consensus 463 --d--te~~~l~~LakLye-~l~d~~eAa~~yek~v~~~~--------------------~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 463 --D--TEGSALVRLAKLYE-ELKDLNEAAQYYEKYVEVSE--------------------LEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred --c--cchHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH--------------------hhcccchHHHHHHHHHHHHH
Confidence 1 13567889999998 99999999999999988654 33555666777788899999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
.+.+++++|..|...+
T Consensus 518 ~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLV 533 (559)
T ss_pred HhhcchHHHHHHHHHH
Confidence 9999999999865433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=119.97 Aligned_cols=211 Identities=14% Similarity=-0.032 Sum_probs=148.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
.+.++..+.+++... ..+++..+..+..+|.++ ...|++++|+..|++++++ +|....+++++|
T Consensus 42 ~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 105 (296)
T PRK11189 42 QEVILARLNQILASR----DLTDEERAQLHYERGVLY----DSLGLRALARNDFSQALAL--------RPDMADAYNYLG 105 (296)
T ss_pred HHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Confidence 344444555544321 134456688999999766 6999999999999999987 456678899999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++++.
T Consensus 106 ----------~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----- 162 (296)
T PRK11189 106 ----------IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----- 162 (296)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 6679999999999999999996 34556788999999999999999999999999864
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-hhhhhhhhhhhhhhH--HHH----hhh---ccccccHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-LKLFSASYSGLEYHY--RDL----KLF---SASYSGLEY 237 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~l~~~~--~a~----~~~---~~~~~~~~~ 237 (303)
++++.. .. ...+.. ..+++++|+..+.++....+. ....+.....++... +++ +.+ ....|....
T Consensus 163 P~~~~~-~~---~~~l~~-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 163 PNDPYR-AL---WLYLAE-SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred CCCHHH-HH---HHHHHH-ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 444421 11 122344 678999999999887654321 111222222233221 122 111 112344667
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++.+|.++...|++++|+.+++.+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999966544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=117.73 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..+..+.++| ..+...|++++|+..++++++. .|....++..+|.++..+|++++|+.+++
T Consensus 28 ~~~~~~~~~la----------~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 89 (234)
T TIGR02521 28 NKAAKIRVQLA----------LGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFR 89 (234)
T ss_pred CcHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33567777888 6668889999999999888774 23445677788999999999999999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--h----hhhhhhhhhhhhhHHHHhhh--
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--L----KLFSASYSGLEYHYRDLKLF-- 228 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~~~~l~~~~~a~~~~-- 228 (303)
++++.. |.....+.++|.++. ..|++++|+..+++++...+. . ..++.++...+.+.+|...+
T Consensus 90 ~al~~~--------~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 90 RALTLN--------PNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHhhC--------CCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888753 233456788888886 889999999999988874321 1 12333344444444443221
Q ss_pred -ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 -SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....|.....+..+|.++...|++++|..+++..
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 161 ALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223444566788889999999999988855444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=134.87 Aligned_cols=209 Identities=12% Similarity=-0.091 Sum_probs=143.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh-----hhcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNE-----YSSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~-----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
..++.|..+|++|+++ +|..+.++..+|.++.... ...+++++|+..+++++++ +|...
T Consensus 275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence 3455566666666544 5666778888887653110 1235589999999999987 45556
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++..+| .++...|++++|+..|++++++ .|....++..+|.++...|++++|+..++++++
T Consensus 339 ~a~~~lg----------~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 339 QALGLLG----------LINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHH----------HHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7788888 6668999999999999999996 345556789999999999999999999999998
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh-hhhhh----hhhhhhhhhhhHHHHh---hhcccc
Q psy4339 161 IKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN-DNLKL----FSASYSGLEYHYRDLK---LFSASY 232 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~~l~~~~~a~~---~~~~~~ 232 (303)
+. +.++ .....++.++. ..|++++|+..+++++... +++|. .+.++..++...+|.. ......
T Consensus 401 l~-----P~~~---~~~~~~~~~~~-~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 401 LD-----PTRA---AAGITKLWITY-YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred cC-----CCCh---hhHHHHHHHHH-hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 74 3333 33445566674 7999999999999998764 33332 3444444455555542 223334
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|........++.+|...|+ +|...+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l 496 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTI 496 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHH
Confidence 4444555666666666663 555533
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=114.78 Aligned_cols=179 Identities=17% Similarity=-0.004 Sum_probs=146.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.+..+..+..+|..+ ...|++++|+..+++++... ++++....++..+| .++...|++++|
T Consensus 29 ~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la----------~~~~~~~~~~~A 89 (235)
T TIGR03302 29 EEWPAEELYEEAKEA----LDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLA----------YAYYKSGDYAEA 89 (235)
T ss_pred ccCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHH----------HHHHhcCCHHHH
Confidence 345678999999887 59999999999999988762 44555667788899 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHH-----
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLS----- 176 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----- 176 (303)
+..++++++.. ++++....++..+|.++... |++++|++.+++++... ++++....+
T Consensus 90 ~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 90 IAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMD 159 (235)
T ss_pred HHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHH
Confidence 99999999864 45566666788999999876 89999999999998764 333322222
Q ss_pred ---------HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 177 ---------VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 177 ---------~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
...+|.+|. ..|++.+|+..+++++...| ++|....++..+|.++.
T Consensus 160 ~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p------------------------~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYL-KRGAYVAAINRFETVVENYP------------------------DTPATEEALARLVEAYL 214 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHCC------------------------CCcchHHHHHHHHHHHH
Confidence 246788996 99999999999999998877 34667788999999999
Q ss_pred hhhcHHHHHHHHHHH
Q psy4339 248 CLENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~~~~~~ 262 (303)
..|++++|.++++.+
T Consensus 215 ~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 215 KLGLKDLAQDAAAVL 229 (235)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999987666
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=123.06 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
++|+..+++.+.. +|..+.++..+|.++ ...|++++|+..+++++.. ..........++..+|
T Consensus 52 ~~A~~~~~~al~~-~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~~~~La-------- 114 (389)
T PRK11788 52 DKAIDLFIEMLKV-DPETVELHLALGNLF----RRRGEVDRAIRIHQNLLSR----PDLTREQRLLALQELG-------- 114 (389)
T ss_pred HHHHHHHHHHHhc-CcccHHHHHHHHHHH----HHcCcHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH--------
Confidence 3444444444332 466678899999766 6999999999999987763 1111222446778888
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..|...|++++|+..|.++++. .|....++..++.++...|++++|+..++++++.... +.......
T Consensus 115 --~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ 181 (389)
T PRK11788 115 --QDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAH 181 (389)
T ss_pred --HHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHH
Confidence 7779999999999999998874 3344567889999999999999999999998765311 11223445
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhhc---ccccc-HHHHHHhHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLFS---ASYSG-LEYDYRGLIHVYE 247 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~~---~~~~~-~~~~~~~la~~~~ 247 (303)
.+..+|.++. ..|++++|+.+++++++..++.. .++..+...+...+|++.+. ...|. ...++..++.+|.
T Consensus 182 ~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 6778999997 99999999999999999877543 23444444555556653222 22233 3456788999999
Q ss_pred hhhcHHHHHHHHHHH
Q psy4339 248 CLENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~~~~~~ 262 (303)
..|++++|..+++.+
T Consensus 261 ~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 261 ALGDEAEGLEFLRRA 275 (389)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999966554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=108.32 Aligned_cols=154 Identities=17% Similarity=0.052 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
...|..-+++|++. +|....++..+|. +| ...|+.+.|.+.|++|+.+ +|..+.+++|.|
T Consensus 51 ~~~A~~nlekAL~~--------DPs~~~a~~~~A~-~Y---q~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG 110 (250)
T COG3063 51 YAQAKKNLEKALEH--------DPSYYLAHLVRAH-YY---QKLGENDLADESYRKALSL--------APNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHH-HH---HHcCChhhHHHHHHHHHhc--------CCCccchhhhhh
Confidence 44555666666655 6888889999995 54 7999999999999999998 677889999999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
+. ++.+|++++|..+|++|+.. |..+....++.|+|.|-.++|+++.|.++|++++++.
T Consensus 111 ~F----------LC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----- 169 (250)
T COG3063 111 AF----------LCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----- 169 (250)
T ss_pred HH----------HHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-----
Confidence 44 49999999999999999984 6677788899999999999999999999999999875
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|........++.... ..|+|..|..++++-..-.+
T Consensus 170 ---p~~~~~~l~~a~~~~-~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 170 ---PQFPPALLELARLHY-KAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred ---cCCChHHHHHHHHHH-hcccchHHHHHHHHHHhccc
Confidence 334445678899995 99999999999987654433
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=121.86 Aligned_cols=194 Identities=16% Similarity=0.068 Sum_probs=158.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
.+.+.|.+|.-.|+.|++- +|..+++|..||.+. ...++-..|+..+++++++ +|....+
T Consensus 296 m~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~q----aENE~E~~ai~AL~rcl~L--------dP~Nlea 355 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQ----AENENEQNAISALRRCLEL--------DPTNLEA 355 (579)
T ss_pred HhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHh----hhccchHHHHHHHHHHHhc--------CCccHHH
Confidence 4566678888888887654 799999999999877 6888888999999999998 6676788
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH-----------hhC----------------------CCcH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLK-----------HFG----------------------ENNV 129 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~----------------------~~~~ 129 (303)
+..|| .+|...|.-.+|+.++.+-+..... ..+ ...|
T Consensus 356 LmaLA----------VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 356 LMALA----------VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHH----------HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 88899 6668888888888888887654210 000 0011
Q ss_pred --HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 130 --QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 130 --~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
....++..||.+|...|+|++|+.+|+.|+... |.....|+.||..+. .-.+.++|+..|++|+++.|
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP- 495 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQP- 495 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCC-
Confidence 234567789999999999999999999999753 777889999999998 88999999999999999988
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+++++++||..+...|.|++|.+ ++.++
T Consensus 496 --------------------------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 496 --------------------------GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred --------------------------CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 778889999999999999999999 66776
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=118.72 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...++..+|.++ ...|++++|+..|.++++. +|....++..++ .++...|++++|++.
T Consensus 106 ~~~~~~~La~~~----~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la----------~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 106 RLLALQELGQDY----LKAGLLDRAEELFLQLVDE--------GDFAEGALQQLL----------EIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHH----------HHHHHhchHHHHHHH
Confidence 456789999777 5999999999999998764 333456677788 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++..... .........+..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|+++
T Consensus 164 ~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~ 231 (389)
T PRK11788 164 AERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLAL-AQGDYA 231 (389)
T ss_pred HHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHH-HCCCHH
Confidence 9998875321 1122345567889999999999999999999998753 344567889999997 999999
Q ss_pred HHHHHHHHHHHhhhhhh-----hhhhhhhhhhhhHHHHhh---hccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 193 KAEKLYFRSIEINDNLK-----LFSASYSGLEYHYRDLKL---FSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~-----~~~~~~~~l~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+|+..+++++...+++. .++..+...+...+|... .....|+.. ....+|.++...|++++|...+ +.+
T Consensus 232 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 232 AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998766431 234445555555555422 222244433 3478999999999999999955 444
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=116.70 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=87.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++.++|+.+|++|+++ +|....++..+| .-|...++...|++.|++|+++ .|
T Consensus 342 lr~eHEKAv~YFkRALkL--------Np~~~~aWTLmG----------HEyvEmKNt~AAi~sYRrAvdi--------~p 395 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKL--------NPKYLSAWTLMG----------HEYVEMKNTHAAIESYRRAVDI--------NP 395 (559)
T ss_pred HHHhHHHHHHHHHHHHhc--------CcchhHHHHHhh----------HHHHHhcccHHHHHHHHHHHhc--------Cc
Confidence 344555555555555554 344444555555 4445555555555555555554 23
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..-.+++.||..|..++-..=|+-+|++|+... |.....|..||.+|. ++++.++|+.+|.+++....
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~d--- 463 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGD--- 463 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccc---
Confidence 334455555555555555555555555555432 222334555555555 55555555555555554433
Q ss_pred hhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..||.+|...++..+|..++++.
T Consensus 464 ------------------------te~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 464 ------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 24467899999999999999999966544
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-14 Score=113.86 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=154.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
+.+|++|.++|.+-+++.++. .+......++.+||+.|| -.|+|+.|+.+.+.-+.+.++. .+......++.
T Consensus 168 ~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyY----lLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~s 239 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYY----LLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHS 239 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceee----eeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhc
Confidence 457899999999999998775 344567789999999996 8999999999999999998774 33444668899
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
|+| +++...|+++.|.++|++.+.+..++ .+....+...+.||+.|.-..++++|+.|+++-+.|.+.
T Consensus 240 Nlg----------N~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 240 NLG----------NCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred ccc----------hhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 88899999999999999999988776 345566778889999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. .+......+++.||.++. .+|..++|..+.++.+.+..
T Consensus 308 L--~DriGe~RacwSLgna~~-alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 308 L--EDRIGELRACWSLGNAFN-ALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred H--HHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Confidence 6 455566788999999998 99999999999999998877
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=126.33 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
.++.|+..|+++++. +|..+.++..+|.++ ...|++++|+..+++++.+
T Consensus 91 ~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l----~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 91 QPDAVLQVVNKLLAV--------NVCQPEDVLLVASVL----LKSKQYATVADLAEQAWLA 139 (656)
T ss_pred CHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh
Confidence 344555555555544 455567788888776 5889999999999988876
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-13 Score=109.39 Aligned_cols=210 Identities=15% Similarity=0.091 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHH------hCC---CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 10 NLSLCSQLALKLKQVL------FGS---ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~------~~~---~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
.|.++..+|-+..+.. ++. +....+..+..-|++| ...|+|++|...|.++.+...+. .+....+
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~f----k~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa 75 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCF----KLAKDWEKAAEAYEKAADCYEKL--GDKFEAA 75 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHH----HHTT-CHHHHHHHHHHHHHHHHT--T-HHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHH----HHHhccchhHHHHHHHHHHHHHc--CCHHHHH
Confidence 4566677776665532 333 3334577888888655 79999999999999999998874 3344466
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAI 159 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al 159 (303)
..+...+ .+|.. +++++|+.++++|+.++.+. +.....+.++..+|.+|... |++++|+++|++|+
T Consensus 76 ~~~~~Aa----------~~~k~-~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 76 KAYEEAA----------NCYKK-GDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHH----------HHHHH-TTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHHh-hCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777 44444 49999999999999999864 44556678999999999999 99999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDY 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 239 (303)
++++.. +.......++..+|.++. ..|+|++|++.|+++..... .. ..........+
T Consensus 143 ~~y~~e--~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l-------------------~~-~l~~~~~~~~~ 199 (282)
T PF14938_consen 143 ELYEQE--GSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCL-------------------EN-NLLKYSAKEYF 199 (282)
T ss_dssp HHHHHT--T-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCC-------------------CH-CTTGHHHHHHH
T ss_pred HHHHHC--CChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhh-------------------cc-cccchhHHHHH
Confidence 999874 334456678889999998 99999999999999887543 11 01111233445
Q ss_pred HhHHHHHHhhhcHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~ 261 (303)
...+.++...||...|.+.++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6778888888998888775443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=126.77 Aligned_cols=180 Identities=15% Similarity=0.071 Sum_probs=134.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+..+++++.... +........++ .++...|++++|+..+++++.. +
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~-------~~~~~~~~~l~----------~~l~~~g~~~eA~~~~~~al~~--------~ 242 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFA-------LERQESAGLAV----------DTLCAVGKYQEAIQTGESALAR--------G 242 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCC-------CcchhHHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 488999999999998766511 11112224445 5568899999999999999985 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDE----AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|....++.++|.++..+|++++ |+..+++++++. |....++.++|.++. .+|++++|+..+++++..
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALI-RTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 4446678889999999999986 899999998764 555678889999997 999999999999999998
Q ss_pred hhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 205 NDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 205 ~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.|+++. ++.++...+.+.+|+..+ ...+|........+|.++...|++++|+..++.+
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 887653 444555556666665322 2235555556667899999999999999955443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-13 Score=132.45 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=148.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|+..|++++++ +|....++..+|.++ ..+|++++|+.+|++++++. |....++..++
T Consensus 367 ~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~----~~~g~~~eA~~~y~~aL~~~--------p~~~~a~~~L~ 426 (1157)
T PRK11447 367 LAQAERLYQQARQV--------DNTDSYAVLGLGDVA----MARKDYAAAERYYQQALRMD--------PGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 45566666666655 345567888999877 69999999999999999872 22122233333
Q ss_pred HHHH-----------------------------------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 88 LILE-----------------------------------EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 88 ~~~~-----------------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
.++. ..+ ..+...|++++|+..|+++++. .|...
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a---~~~~~~g~~~eA~~~~~~Al~~--------~P~~~ 495 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA---EALENQGKWAQAAELQRQRLAL--------DPGSV 495 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH---HHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence 2221 111 5567889999999999999986 23344
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-------------cC--------------------------------
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV-------------LG-------------------------------- 167 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~-------------------------------- 167 (303)
.++..+|.+|..+|++++|+..++++++..... .+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 567899999999999999999998887642000 00
Q ss_pred ---------------------CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhH
Q psy4339 168 ---------------------KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHY 222 (303)
Q Consensus 168 ---------------------~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~ 222 (303)
..+|.....+..+|.++. ..|++++|+..|++++...|+++. ++..+...+...
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~-~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ-QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 001112235667899997 999999999999999998886553 344444445555
Q ss_pred HHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 223 RDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 223 ~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+..+ ....|+....+..+|.++...|++++|.++++.+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 554222 2234455566777788888888888888755443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-14 Score=130.67 Aligned_cols=186 Identities=11% Similarity=-0.062 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+..+|.++ ...|++++|+.+++++++. +|........++ ......|++++|+..++++
T Consensus 545 ~~~la~al----l~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La----------~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 545 LLAAANTA----QAAGNGAARDRWLQQAEQR--------GLGDNALYWWLH----------AQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHH----------HHHHhCCCHHHHHHHHHHH
Confidence 55667555 5788888888888888765 122223333344 3334558888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++. .|. ...+.++|.++..+|++++|+..+++++.+. |....++.++|.++. ..|++++|+.
T Consensus 603 L~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~-~~G~~eeAi~ 664 (987)
T PRK09782 603 LNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALW-DSGDIAQSRE 664 (987)
T ss_pred HHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 875 222 4567788888888888888888888887763 444567788888886 8888888888
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+++++++.|+++. .+.++..++.+.+|+ +......|..+.+....|.+...+.+++.|.+ +.+..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88888887776542 444444445444443 22223355666777788888888888888877 44443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=129.09 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
...+|.++ ...|++++|+..|++++.. .+.. ..+..+| .++...|++++|+.+++++
T Consensus 512 ~L~lA~al----~~~Gr~eeAi~~~rka~~~-----~p~~----~a~~~la----------~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 512 HRAVAYQA----YQVEDYATALAAWQKISLH-----DMSN----EDLLAAA----------NTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHhcc-----CCCc----HHHHHHH----------HHHHHCCCHHHHHHHHHHH
Confidence 55566555 4899999999999986443 1111 2345667 5668999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++. .|.....+..++.....+|++++|+..+++++++. |. ...+.++|.++. ..|++++|+.
T Consensus 569 L~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~-~lG~~deA~~ 630 (987)
T PRK09782 569 EQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYR-QRHNVPAAVS 630 (987)
T ss_pred Hhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHH-HCCCHHHHHH
Confidence 985 13333445566666677799999999999999764 43 567899999998 9999999999
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.+++++.+.|+++. ++.++...+...+|+..+ -...|....++.++|.++...|++++|+.+++.+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999997663 344455555555665332 2346777788999999999999999999955444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=123.32 Aligned_cols=204 Identities=12% Similarity=-0.087 Sum_probs=141.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|...+++|+++ +|+.+.++..+|.++ ...|++++|+..|++++++ +|..+.++..+|
T Consensus 320 ~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 379 (553)
T PRK12370 320 MIKAKEHAIKATEL--------DHNNPQALGLLGLIN----TIHSEYIVGSLLFKQANLL--------SPISADIKYYYG 379 (553)
T ss_pred HHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 34455555555444 466778889999777 5899999999999999998 456667888899
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..+++++++. +.+ ......++.++...|++++|+..+++++...
T Consensus 380 ----------~~l~~~G~~~eAi~~~~~Al~l~-----P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----- 436 (553)
T PRK12370 380 ----------WNLFMAGQLEEALQTINECLKLD-----PTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQH----- 436 (553)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHhcC-----CCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----
Confidence 66699999999999999999962 232 2334456667778999999999999987542
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhh-----HHHHhhhccccccHHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYH-----YRDLKLFSASYSGLEYD 238 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~-----~~a~~~~~~~~~~~~~~ 238 (303)
+|.....+.++|.++. .+|++++|...+.+.....+... .++..+...+.- .+.++.....+ . .
T Consensus 437 --~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~-~---~ 509 (553)
T PRK12370 437 --LQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRID-N---N 509 (553)
T ss_pred --cccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhh-c---C
Confidence 2444557889999998 99999999999998776655322 122222222211 11111111111 1 1
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...++.+|.-.|+.+.+.-+ +.+
T Consensus 510 ~~~~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 510 PGLLPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred chHHHHHHHHHhhhHHHHHH-HHh
Confidence 23388888899998888877 444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=132.68 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=148.2
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhh-------
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL------- 79 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------- 79 (303)
.++.|+..|+++++. +|....++..||.++ ..+|++++|+.+|+++++.... ++..
T Consensus 284 ~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~----~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--------NPKDSEALGALGQAY----SQQGDRARAVAQFEKALALDPH-----SSNRDKWESLL 346 (1157)
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHH
Confidence 345566666666554 455678899999877 5999999999999999987322 2111
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 80 ----TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 80 ----~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.......| ..+...|++++|+..|+++++. +|....++..+|.++..+|++++|+.+|
T Consensus 347 ~~~~~~~~~~~g----------~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 347 KVNRYWLLIQQG----------DAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HhhhHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01112234 6668999999999999999996 2344567889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHH---------------------------------------HHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 156 LKAIAIKEKVLGKDDYEV---------------------------------------GLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++++++. ++++.. ...+..+|.++. ..|++++|+.
T Consensus 409 ~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~g~~~eA~~ 482 (1157)
T PRK11447 409 QQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE-NQGKWAQAAE 482 (1157)
T ss_pred HHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH-HCCCHHHHHH
Confidence 9999763 111110 112344667776 7888888888
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|++++++.|+++. ++..+...+...+|...+ ....|.....++.++..+...|+.++|+..++.+
T Consensus 483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 88888888876552 444555555555554322 2234555566777777777788888888765544
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=115.10 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
.+.-.+|.-+.++.+ +.|..+.+|..+| +|| ...|++.+|..+|.++-.+ +|..+.++...|.
T Consensus 292 ~~~n~Lf~lsh~LV~-----~yP~~a~sW~aVg-~YY---l~i~k~seARry~SKat~l--------D~~fgpaWl~fgh 354 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVD-----LYPSKALSWFAVG-CYY---LMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGH 354 (611)
T ss_pred cccchHHHHHHHHHH-----hCCCCCcchhhHH-HHH---HHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhH
Confidence 344556666666643 3677778888888 677 6778888888888888765 2333333333442
Q ss_pred HHHHHhhhh------------------------HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 89 ILEEIALDS------------------------NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 89 ~~~~~~~~~------------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
++...+... .-|...++++-|..+|.+|+.+. |.+| -.++.+|.+...
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dp---lv~~Elgvvay~ 426 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSDP---LVLHELGVVAYT 426 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCcc---hhhhhhhheeeh
Confidence 221000000 33455667777777777777753 3333 357789999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
.+.|.+|..+|+.++...+... +..+...-.+.|||.+++ +++++++|+.++++++.+.+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~------------------ 486 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSP------------------ 486 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCC------------------
Confidence 9999999999999997665543 333345567899999999 99999999999999999887
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
..+.++..+|.+|..+|+++.|++ +.+++
T Consensus 487 ---------k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 487 ---------KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred ---------CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456678899999999999999999 55655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-13 Score=127.04 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh--
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL-- 210 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 210 (303)
.++..+|.+|...|++++|+.+|+++++.. |....++.++|.++. ..|+ .+|+.++++++.+.++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA--------PDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 344455555555555555555555554431 222334445555554 5555 4455555555555444332
Q ss_pred --hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 211 --FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 211 --~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
++..+...+.+.+|++.+ -...|....++.+++.++...|++++|.+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 222223333333332111 111222334455555555555555555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=108.58 Aligned_cols=197 Identities=15% Similarity=0.031 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|-.| ....+-++....|.+|.++ +|..+.+|+..| .++.-.+++++|+
T Consensus 357 ~~~~~lyI~~a~~y----~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRg----------Qm~flL~q~e~A~ 414 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAY----ADENQSEKMWKDFNKAEDL--------DPENPDVYYHRG----------QMRFLLQQYEEAI 414 (606)
T ss_pred cccchHHHHHHHHH----hhhhccHHHHHHHHHHHhc--------CCCCCchhHhHH----------HHHHHHHHHHHHH
Confidence 33344477788444 6788888888999988877 555667888888 5568899999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.-|++++++ .|..+.++..++...+++++++++...|++++.-+ |.-..++...|.++. .+++
T Consensus 415 aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~fAeiLt-Dqqq 477 (606)
T KOG0547|consen 415 ADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNLFAEILT-DQQQ 477 (606)
T ss_pred HHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHHHHHHHh-hHHh
Confidence 999999996 56778889999999999999999999999998765 555667888999998 9999
Q ss_pred HHHHHHHHHHHHHhhhh--------hhhhhhhhh---hhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDN--------LKLFSASYS---GLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~--------~~~~~~~~~---~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+++|++.|.+|+.+.++ .|.+..+.. .-+.+.+|++.+ .+-+|..-.++..||.+-.++|+.++|+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999885 123332222 124555555433 2346777788999999999999999999
Q ss_pred HHH-HHHHHHH
Q psy4339 257 EFT-NKLSEWK 266 (303)
Q Consensus 257 ~~~-~~~~~~~ 266 (303)
+++ +++...+
T Consensus 558 elFEksa~lAr 568 (606)
T KOG0547|consen 558 ELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHH
Confidence 955 5554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-13 Score=125.71 Aligned_cols=215 Identities=15% Similarity=0.063 Sum_probs=122.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
.-++.|..+|++++++ .|....++.++|.++ ...|++++|...++++++. .|....++..
T Consensus 479 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~ 538 (899)
T TIGR02917 479 GDLAKAREAFEKALSI--------EPDFFPAAANLARID----IQEGNPDDAIQRFEKVLTI--------DPKNLRAILA 538 (899)
T ss_pred CCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcCcHHHHHH
Confidence 4456677777777654 223334555666544 4666666666666666543 1112223333
Q ss_pred HHHHHH---------------------------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy4339 86 KALILE---------------------------EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNI 138 (303)
Q Consensus 86 la~~~~---------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 138 (303)
++.++. .++ ..+...|++++|+..+++++.. .|....++..+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 607 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA---QYYLGKGQLKKALAILNEAADA--------APDSPEAWLML 607 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH---HHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Confidence 331110 000 4445556666666666555442 22334567778
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhh
Q psy4339 139 GRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSAS 214 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~ 214 (303)
|.++...|++++|+.+++++++.. |....++..+|.++. ..|++++|...+++++...|+++. .+..
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYA-VMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 888888888888888888877642 333456777888886 888888888888888877765432 2222
Q ss_pred hhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 215 YSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 215 ~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+...+...+|. +......|.....+..+|.++...|++++|.++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22223333333 22223344455556677777777777777777443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=89.64 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
||..+.++.++|.+|..+|++++|+++|++++++ .+..|+++|.++.++.++|.++. .+|++++|+.++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhc
Confidence 5788999999999999999999999999999999 66678888899999999999997 99999999999999999875
|
... |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-12 Score=99.98 Aligned_cols=171 Identities=15% Similarity=-0.017 Sum_probs=125.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|+++++. .+++|....++..+|.++ ...|++++|+..++++++.. ++++....+++.
T Consensus 47 ~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~----~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~ 112 (235)
T TIGR03302 47 GDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAY----YKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYL 112 (235)
T ss_pred CCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHH
Confidence 3445555555555443 345666778899999888 59999999999999999873 445555567888
Q ss_pred HHHHHHHH-hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH--------------HHHHHHHHHHHHhhcHHH
Q psy4339 86 KALILEEI-ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA--------------KHYGNIGRLYQSMQKFDE 150 (303)
Q Consensus 86 la~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~la~~~~~~~~~~~ 150 (303)
+|.++... + ..+...|++++|+..+++++.... +++... .....+|.+|..+|++++
T Consensus 113 ~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 113 RGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 88554211 0 122344899999999999998642 232221 122478999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|+..++++++.. ++.|....++..+|.++. ..|++++|..+++.....
T Consensus 185 A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENY-----PDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHC-----CCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 999999999875 556777889999999997 999999999988776543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=87.50 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
||..+.++.++| .+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++..+|++++|++++
T Consensus 1 H~~~a~~~~~la----------~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 1 HPDTANAYNNLA----------RVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp -HHHHHHHHHHH----------HHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 578889999999 7779999999999999999999 55567788889999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4339 156 LKAIAIKEK 164 (303)
Q Consensus 156 ~~al~~~~~ 164 (303)
++++++.++
T Consensus 70 ~~al~i~~k 78 (78)
T PF13424_consen 70 QKALDIFEK 78 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhcC
Confidence 999998753
|
... |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=111.90 Aligned_cols=216 Identities=17% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH--
Q psy4339 15 SQLALKLKQVLFGSE-NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE-- 91 (303)
Q Consensus 15 ~~~al~~~~~~~~~~-~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-- 91 (303)
+++|+++.++..... +|.....+..+|.+. ...+++++|+..|++.+..-.. .+ ..+..++.++.
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La----~~~~~~~~A~~ay~~l~~~~~~-----~~---~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLA----WSLGDYDEAIEAYEKLLASDKA-----NP---QDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----cccccccccccccccccccccc-----cc---ccccccccccccc
Confidence 456666664433333 455666777777555 5788999999999888765222 11 11222220000
Q ss_pred --------------HH----hh--hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 92 --------------EI----AL--DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 92 --------------~~----~~--~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.- .+ ...++...++++++...+.++... +..+.....+..+|.++...|++++|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 00 002233444444444444443321 11122333444555555555555555
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhh
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKL 227 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~ 227 (303)
+.+++++++.. |....+...++.++. ..|+++++...++......+++| .++.++..++...+|+..
T Consensus 166 ~~~~~~al~~~--------P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 166 LRDYRKALELD--------PDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHH---------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHcC--------CCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 55555555543 222333444555554 55555555555544444443333 234444444444444421
Q ss_pred h---ccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 228 F---SASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 228 ~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+ ...+|....++..+|.++...|+.++|..
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 1 12233444445555555555555555555
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=107.11 Aligned_cols=189 Identities=10% Similarity=-0.051 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
+++..|+.+| ....+...|+..+.+.++.+ |.-...+..+| .++...+++++|.++|+
T Consensus 257 dTfllLskvY----~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~A----------Ri~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 257 DTFLLLSKVY----QRIDQPERALLVIGEGLDSF--------PFDVTYLLGQA----------RIHEAMEQQEDALQLYK 314 (478)
T ss_pred hHHHHHHHHH----HHhccHHHHHHHHhhhhhcC--------CchhhhhhhhH----------HHHHHHHhHHHHHHHHH
Confidence 3444555555 46666666666666666542 22233334444 44456666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.+++. +|....+..-+|.-|..-++.+-|+.+|++.+++- ..+| ..++|+|.++. --+++|-+
T Consensus 315 ~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~sp---eLf~NigLCC~-yaqQ~D~~ 377 (478)
T KOG1129|consen 315 LVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSP---ELFCNIGLCCL-YAQQIDLV 377 (478)
T ss_pred HHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCCh---HHHhhHHHHHH-hhcchhhh
Confidence 66653 22223333344445555555555555555555432 2222 23455555554 45555555
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhH----------HHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 195 EKLYFRSIEINDNLKLFSASYSGLEYHY----------RDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~l~~~~----------~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+..+++|+....+...-+..+++|+... +-+...-..++....++.+||.+-.+.|+.++|..++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 5555555555544444444444442211 1122222344578889999999999999999999988776
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=103.08 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
+.|+++.+-.-..++.....+-.+|...+|. .--.++..|..+...|+.+ +...+.++.|.|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~fl--qggk~~~~aqqyad~aln~--------dryn~~a~~nkg-------- 497 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFL--QGGKDFADAQQYADIALNI--------DRYNAAALTNKG-------- 497 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHH--hcccchhHHHHHHHHHhcc--------cccCHHHhhcCC--------
Confidence 3466665555445655555666777754531 1134677888888777766 223345566666
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
++-+..|++++|.+.|++|+. ++..-..+++|+|..+..+|+.++|+++|-+...+. ...+.
T Consensus 498 --n~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~e 559 (840)
T KOG2003|consen 498 --NIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAE 559 (840)
T ss_pred --ceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHH
Confidence 555788999999999998887 345567788899999999999999999998887776 33467
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------------------------------------
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL------------------------------------- 218 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l------------------------------------- 218 (303)
++..++.+|. .+.+..+|++++-++..+.|++|.+..-+..|
T Consensus 560 vl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 560 VLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 7889999997 89999999999999998888887654444333
Q ss_pred -hhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 219 -EYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 219 -~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.+..+++.-+. --.|........++.++.+.|+|.+|.+.++..
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 01112322211 124556667778999999999999999855443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-11 Score=96.38 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=158.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
+|++.+..++. .+|.+.++...||+.+ ++.|..|.|+...+..++. .+-.......+...+|
T Consensus 53 KAvdlF~e~l~-~d~~t~e~~ltLGnLf----RsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~--------- 114 (389)
T COG2956 53 KAVDLFLEMLQ-EDPETFEAHLTLGNLF----RSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLG--------- 114 (389)
T ss_pred hHHHHHHHHHh-cCchhhHHHHHHHHHH----HhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHH---------
Confidence 45555555543 4678899999999755 8999999999998875543 1112223556677777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
.-|...|-+|.|+..|....+. +.....+...|..+|....+|++|++.-++...+..+ +...+++..
T Consensus 115 -~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqf 182 (389)
T COG2956 115 -RDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQF 182 (389)
T ss_pred -HHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHH
Confidence 8889999999999999876652 2233467889999999999999999998887766433 344678888
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHH---hhhc-cccccHHHHHHhHHHHHHh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDL---KLFS-ASYSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~---~~~~-~~~~~~~~~~~~la~~~~~ 248 (303)
++.+|..+. ...+.+.|...+.+|++..+++-...+.+.++ +.+.+|+ +... .++.-...+...|..+|..
T Consensus 183 yCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 183 YCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 999999998 89999999999999999988766555555444 4455554 2222 3333466778889999999
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.|+.++...++...
T Consensus 262 lg~~~~~~~fL~~~ 275 (389)
T COG2956 262 LGKPAEGLNFLRRA 275 (389)
T ss_pred hCCHHHHHHHHHHH
Confidence 99999998865433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-12 Score=93.77 Aligned_cols=112 Identities=8% Similarity=-0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy4339 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYG 136 (303)
Q Consensus 57 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 136 (303)
-+.++++++++ +|.. +..+| ..+...|++++|...|++++.. +|....++.
T Consensus 12 ~~~~~~~al~~--------~p~~---~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~ 62 (144)
T PRK15359 12 PEDILKQLLSV--------DPET---VYASG----------YASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHI 62 (144)
T ss_pred HHHHHHHHHHc--------CHHH---HHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 35677888776 3432 34567 6668999999999999999885 456678899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++|.++...|++++|+..|++++.+. |....+++++|.++. ..|++++|+..|++++.+.|
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999763 566778999999997 99999999999999999888
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=93.32 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
+.++++++++ +|+. +..+|.++ ...|++++|+.+|++++.. +|....++.++|
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg---- 65 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYAS----WQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALA---- 65 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHH----
Confidence 4567777666 4543 45678777 5999999999999999876 566678899999
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
.++...|++++|+..|++++.+ .|....++.++|.++..+|++++|+..|++++.+. |
T Consensus 66 ------~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p 123 (144)
T PRK15359 66 ------GTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------Y 123 (144)
T ss_pred ------HHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Confidence 6679999999999999999985 45567789999999999999999999999999875 4
Q ss_pred HHHHHHHHHHHHHH
Q psy4339 172 EVGLSVGHLASLYN 185 (303)
Q Consensus 172 ~~~~~~~~la~~~~ 185 (303)
.....+.++|.+..
T Consensus 124 ~~~~~~~~~~~~~~ 137 (144)
T PRK15359 124 ADASWSEIRQNAQI 137 (144)
T ss_pred CChHHHHHHHHHHH
Confidence 44445566666654
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=108.19 Aligned_cols=208 Identities=16% Similarity=0.103 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|++.+++...++..+++.....-..+| ++| ..|+.. .+|.-+-++... .|..+.++..+|
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia-~l~----el~~~n---~Lf~lsh~LV~~-----yP~~a~sW~aVg------- 319 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIA-CLY----ELGKSN---KLFLLSHKLVDL-----YPSKALSWFAVG------- 319 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHH-HHH----Hhcccc---hHHHHHHHHHHh-----CCCCCcchhhHH-------
Confidence 667777777777656555556667888 775 677644 456666665433 677778888888
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.-|...|++.+|.++|-||..+ +|..+.+|...|..+...|..++|+.+|..|-++... ..-|
T Consensus 320 ---~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP--- 382 (611)
T KOG1173|consen 320 ---CYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLP--- 382 (611)
T ss_pred ---HHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---Ccch---
Confidence 5558889999999999999886 5677888999999999999999999999999887632 2323
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhhhhhHHHH----------hhhccccccHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGLEYHYRDL----------KLFSASYSGLEYDYR 240 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~~~~a~----------~~~~~~~~~~~~~~~ 240 (303)
...+|.-|. ..+++.-|..+|.+|+.++|.+|.+ +...+.-+.+.+|. +...+..+.....+.
T Consensus 383 --~LYlgmey~-~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 383 --SLYLGMEYM-RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred --HHHHHHHHH-HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 457888897 8999999999999999999988853 33333333333332 222233333445688
Q ss_pred hHHHHHHhhhcHHHHHHHHHHH
Q psy4339 241 GLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 241 ~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+||.++.+.+++++|+.+++..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999965544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=95.95 Aligned_cols=178 Identities=16% Similarity=0.049 Sum_probs=133.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|.+|.+++.+. .+....+..+...+.++ ..+++++|+.++++|++++... +.....+.++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~-----k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~ 119 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCY-----KKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKE 119 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHH-----HHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH-----HhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHH
Confidence 45677888888888887772 44556778888888665 5559999999999999999874 333447888999
Q ss_pred HHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+| .+|... |++++|+++|++|+++++.. +.......++..+|.++...|+|++|++.|+++......
T Consensus 120 lA----------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 120 LA----------EIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HH----------HHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HH----------HHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 99 666888 99999999999999999874 234456688899999999999999999999998765322
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. .........+...+.++. ..|++..|...+++.....|
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L-~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHL-AMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHGTTST
T ss_pred cc-ccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 10 112334455677888887 99999999999999887776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-11 Score=99.91 Aligned_cols=161 Identities=17% Similarity=0.018 Sum_probs=114.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+..+.|...|++++++ +|+.+.++..+|.++ ...|++++|+..|++++++ +|....++.+
T Consensus 78 g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~ 137 (296)
T PRK11189 78 GLRALARNDFSQALAL--------RPDMADAYNYLGIYL----TQAGNFDAAYEAFDSVLEL--------DPTYNYAYLN 137 (296)
T ss_pred CCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 3445566666666654 466678999999766 6999999999999999987 5666678899
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH--
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE-- 163 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-- 163 (303)
+| .++...|++++|++.++++++.. ++++.. ..+ ..+....+++++|+..+.+++....
T Consensus 138 lg----------~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 138 RG----------IALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HH----------HHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 99 66689999999999999999852 333321 111 1233456678888888866543210
Q ss_pred --------HhcCC---------------C----chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 164 --------KVLGK---------------D----DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 164 --------~~~~~---------------~----~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-..|. . .|....+++++|.++. ..|++++|+.+|++++.+.+
T Consensus 199 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~-~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 199 QWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL-SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC
Confidence 00010 0 1233467899999998 99999999999999998775
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=92.42 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.....++.+|+..+ ...-+|.+++.+-.-.+.. .|... ..-......+| ..+...+.|+++
T Consensus 80 ~~~~ea~lnlar~~----e~l~~f~kt~~y~k~~l~l----pgt~~~~~~gq~~l~~~----------~Ahlgls~fq~~ 141 (518)
T KOG1941|consen 80 DFLLEAYLNLARSN----EKLCEFHKTISYCKTCLGL----PGTRAGQLGGQVSLSMG----------NAHLGLSVFQKA 141 (518)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHhcC----CCCCcccccchhhhhHH----------HHhhhHHHHHHH
Confidence 34566777888666 5677777777776665554 12111 11234445566 777889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD--DYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 187 (303)
++.|++|+.+...+ .|......++..||.++....++++|..+..+|.++.....-++ ......+++.++..++ .
T Consensus 142 Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~ 218 (518)
T KOG1941|consen 142 LESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-L 218 (518)
T ss_pred HHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-H
Confidence 99999999997654 33344567889999999999999999999999999987653122 2234567889999998 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWK 266 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~ 266 (303)
+|+..+|.++.+++.++.- ...+.+....+...+|++|...|+.+.|.. |.+++....
T Consensus 219 ~G~LgdA~e~C~Ea~klal---------------------~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 219 LGRLGDAMECCEEAMKLAL---------------------QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hcccccHHHHHHHHHHHHH---------------------HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 9999999999999999887 223345677888999999999999999999 888887766
Q ss_pred HHHh
Q psy4339 267 ILRE 270 (303)
Q Consensus 267 ~~~~ 270 (303)
.+++
T Consensus 278 ~~gd 281 (518)
T KOG1941|consen 278 SLGD 281 (518)
T ss_pred hhhh
Confidence 6654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=106.17 Aligned_cols=127 Identities=9% Similarity=-0.035 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
|....++.+|| .+....|.+++|+.+++.++++ .|+...+..++|.++.+++++++|+..++
T Consensus 83 ~~~~~~~~~La----------~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 83 PHTELFQVLVA----------RALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cccHHHHHHHH----------HHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33455556666 4446666666666666666664 34445556666666666666666666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE 236 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~ 236 (303)
+++... |+.+..++.+|.++. .+|++++|+.+|++++. + +|+..
T Consensus 145 ~~l~~~--------p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~--~-------------------------~p~~~ 188 (694)
T PRK15179 145 LYFSGG--------SSSAREILLEAKSWD-EIGQSEQADACFERLSR--Q-------------------------HPEFE 188 (694)
T ss_pred HHhhcC--------CCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHh--c-------------------------CCCcH
Confidence 665432 445555666666665 66666666666666655 2 22444
Q ss_pred HHHHhHHHHHHhhhcHHHHHH
Q psy4339 237 YDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++..+|.++...|+.++|..
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 556666666666666666666
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=108.62 Aligned_cols=191 Identities=10% Similarity=-0.094 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLFGSE--NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILE 91 (303)
Q Consensus 15 ~~~al~~~~~~~~~~--~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~ 91 (303)
+.+|++.+++++... .|..+..+ +|.++ ...|++++|+.+|++++.. .+..+. .......++
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~--la~~y----l~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~---- 317 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRW--VASAY----LKLHQPEKAQSILTELFYH-----PETIADLSDEELADLF---- 317 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHH--HHHHH----HhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHH----
Confidence 455566666554332 24443333 46555 4788888888888887653 111111 123334444
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh---h--CCCcH--HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKH---F--GENNV--QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+...|++++|+.+++++....... . ....| ....++..+|.++...|++++|+..+++++...
T Consensus 318 ------~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-- 389 (765)
T PRK10049 318 ------YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-- 389 (765)
T ss_pred ------HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45578999999999999888753210 0 00111 234577899999999999999999999998764
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHH
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIH 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~ 244 (303)
|....++..+|.++. ..|++++|+..+++++.+.| +....+..+|.
T Consensus 390 ------P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~P---------------------------d~~~l~~~~a~ 435 (765)
T PRK10049 390 ------PGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEP---------------------------RNINLEVEQAW 435 (765)
T ss_pred ------CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCC---------------------------CChHHHHHHHH
Confidence 444678899999998 99999999999999998877 44556888999
Q ss_pred HHHhhhcHHHHHHHHHHH
Q psy4339 245 VYECLENFEKMTEFTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~ 262 (303)
++...|++++|...++.+
T Consensus 436 ~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999999999955444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=104.65 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=123.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.|..+.++.+||.+. ...|++++|+.+++.++++ .|+...+..+++ .++.+.+++++
T Consensus 81 ~~~~~~~~~~~La~i~----~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a----------~~L~~~~~~ee 138 (694)
T PRK15179 81 RYPHTELFQVLVARAL----EAAHRSDEGLAVWRGIHQR--------FPDSSEAFILML----------RGVKRQQGIEA 138 (694)
T ss_pred hccccHHHHHHHHHHH----HHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHH----------HHHHHhccHHH
Confidence 4566788999999888 7999999999999999998 567778888899 66699999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..+++++.. .|+...+++.+|.++...|++++|+.+|++++.- +|....++.++|.++. ..
T Consensus 139 A~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~-~~ 201 (694)
T PRK15179 139 GRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLT-RR 201 (694)
T ss_pred HHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH-Hc
Confidence 99999999995 4667788999999999999999999999999861 3566778999999998 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|+.++|...|+++++...
T Consensus 202 G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 202 GALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999998776
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-10 Score=99.47 Aligned_cols=205 Identities=15% Similarity=0.046 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....++..+|.++ .+++...++.+|..|++++...... .-...++|+| ..++..|++.+|.
T Consensus 411 ~~d~~a~l~laql~-----e~~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNva----------slhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLL-----EQTDPWASLDAYGNALDILESKGKQ---IPPEVLNNVA----------SLHFRLGNIEKAL 472 (1018)
T ss_pred cccHHHHHHHHHHH-----HhcChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHH----------HHHHHhcChHHHH
Confidence 66678888999655 6777778899999999988875333 3457889999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENN--VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
..|.+|+..+......+. ......-+|+|.++..+++++.|.+.|...+.. +|..+.++..+|..-. ..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~-~k 543 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMAR-DK 543 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHH-hc
Confidence 999999998543222222 122456789999999999999999999988754 5889999999997777 78
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhh---------------------------------hhhH-------------
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGL---------------------------------EYHY------------- 222 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l---------------------------------~~~~------------- 222 (303)
++..+|..+++.++.+...+|.....+.++ +++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 999999999999999888666433333211 2111
Q ss_pred ------HHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 223 ------RDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 223 ------~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|++.++ ..+|....+-+.+|.++...|++.+|...+..+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 3444433 346666677777788888888888887755444
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=92.74 Aligned_cols=198 Identities=20% Similarity=0.159 Sum_probs=143.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
+..++.|+..|..++++. ....-+.+.+-++ ...|.+.+.......+++..... ..-+.
T Consensus 237 kk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~----~e~~~~~~c~~~c~~a~E~gre~--------rad~k 295 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA---------TDITYLNNIAAVY----LERGKYAECIELCEKAVEVGREL--------RADYK 295 (539)
T ss_pred hhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHH----HhccHHHHhhcchHHHHHHhHHH--------HHHHH
Confidence 345566666677666662 3445666677556 58999999999888887764332 12222
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH--hh----------------CCCcHHHHHHHHHHHHHHHHhh
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLK--HF----------------GENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~~ 146 (303)
.++..+..++ ..|...++++.|+.+|.+++.-.+. .. .--.|..+.--..-|+.+...|
T Consensus 296 lIak~~~r~g---~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 296 LIAKALARLG---NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHhh---hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 2333333233 7889999999999999998875543 00 0113334444456699999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~ 226 (303)
+|.+|+.+|.+|+... |..+..+.|.|.+|. .+|++..|+...+.++++.|
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p-------------------- 423 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDP-------------------- 423 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCc--------------------
Confidence 9999999999988642 778889999999998 99999999999999998877
Q ss_pred hhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.....|..-|.++..+.+|++|.+ |.+++
T Consensus 424 -------~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 424 -------NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888888888 65555
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=96.40 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++...| +++ +-.|+.-.|...+..++.+. |.....|..+| ..|....+-++....
T Consensus 325 ~A~al~~~g-tF~---fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a----------~~y~d~~~~~~~~~~ 382 (606)
T KOG0547|consen 325 MAEALLLRG-TFH---FLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRA----------AAYADENQSEKMWKD 382 (606)
T ss_pred HHHHHHHhh-hhh---hhcCCchhhhhhHHHHHhcC--------cccchHHHHHH----------HHHhhhhccHHHHHH
Confidence 467777777 444 78999999999999999883 33334477778 666899999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
|.+|.++ +|....+|+..|.++.-++++++|+.-|++++.+. |+.+..+..++.+. |++++++
T Consensus 383 F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~-Yr~~k~~ 445 (606)
T KOG0547|consen 383 FNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCAL-YRQHKIA 445 (606)
T ss_pred HHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHH-HHHHHHH
Confidence 9999996 34455679999999999999999999999999874 88888999999999 5999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++...|+.+..-+| ..+.++.-.|.++..++++++|.+.+...
T Consensus 446 ~~m~~Fee~kkkFP---------------------------~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFP---------------------------NCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhCC---------------------------CCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998888 55667888999999999999999955443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-10 Score=101.09 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+..++......+.. ++..+.+++.|++-+ +..|+|..+..+...++... ...+..+..++.+|
T Consensus 252 ~~~~~~ll~~ay~~-n~~nP~~l~~LAn~f----yfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~g------- 314 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKE-NNENPVALNHLANHF----YFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLG------- 314 (1018)
T ss_pred HHHHHHHHHHHHhh-cCCCcHHHHHHHHHH----hhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHH-------
Confidence 44444444443322 234456777777544 47778887777777776652 23455667777777
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.+|..+|+|++|..+|.+++... ++ ...-.+..+|..|...|+++.|..+|++++... |...
T Consensus 315 ---Rs~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~ 376 (1018)
T KOG2002|consen 315 ---RSYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNY 376 (1018)
T ss_pred ---HHHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchH
Confidence 66678888888888888777742 11 134456677888888888888888888777654 3444
Q ss_pred HHHHHHHHHHHHhhc----CHHHHHHHHHHHHHhhhhhhh----hhhh------hhhhhhhHHHHhhh-ccccccHHHHH
Q psy4339 175 LSVGHLASLYNYHML----EYHKAEKLYFRSIEINDNLKL----FSAS------YSGLEYHYRDLKLF-SASYSGLEYDY 239 (303)
Q Consensus 175 ~~~~~la~~~~~~~g----~~~~A~~~~~~al~~~~~~~~----~~~~------~~~l~~~~~a~~~~-~~~~~~~~~~~ 239 (303)
.++.-||.+|. ..+ ..++|..+..+++...+.+.. ++.. +..|..+..|+..+ ....+.-..++
T Consensus 377 etm~iLG~Lya-~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYA-HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHH-hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45566777765 443 456777777777766542211 1111 11122233343222 12233345679
Q ss_pred HhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 240 RGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+++|..++..|++.+|...+ ++.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHh
Confidence 99999999999999999954 444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-09 Score=102.53 Aligned_cols=214 Identities=14% Similarity=-0.007 Sum_probs=137.4
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|..+|+++++. .|....++..+|.++ ...|++++|+..++++++. .|.... +..+|
T Consensus 65 ~~~A~~~~~~al~~--------~P~~~~a~~~la~~l----~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la 123 (765)
T PRK10049 65 WQNSLTLWQKALSL--------EPQNDDYQRGLILTL----ADAGQYDEALVKAKQLVSG--------APDKAN-LLALA 123 (765)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHH
Confidence 44555555555544 344455667888666 5899999999999998876 344344 77778
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH----------
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK---------- 157 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---------- 157 (303)
.++...|++++|+..++++++. .|....++..+|.++...+..++|+..+++
T Consensus 124 ----------~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 124 ----------YVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 6668999999999999999996 233445556678888777777776655552
Q ss_pred -----------------------------HHHHHHHhc---C---CCchHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHH
Q psy4339 158 -----------------------------AIAIKEKVL---G---KDDYEVGLSVGH-LASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 158 -----------------------------al~~~~~~~---~---~~~~~~~~~~~~-la~~~~~~~g~~~~A~~~~~~a 201 (303)
|++..+... . ...+....+... ++.+ . ..|++++|+..|+++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l-~~g~~~eA~~~~~~l 263 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-L-ARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHh
Confidence 222222211 1 111222333333 4444 3 689999999999999
Q ss_pred HHhhhhhhh-----hhhhhhhhhhhHHHHhhhc---ccccc----HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 202 IEINDNLKL-----FSASYSGLEYHYRDLKLFS---ASYSG----LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 202 l~~~~~~~~-----~~~~~~~l~~~~~a~~~~~---~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++..++.|. ++..+..++...+|+..+. ...|. .......++.++...|++++|..+++.+
T Consensus 264 l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 264 KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 887543332 5556666666666653221 22222 1345677888889999999999976555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-10 Score=95.62 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
........|.++ ...|++++|...++++++.. ++++ .++.. + ..+...|++..+...
T Consensus 42 ~~e~~~~~a~~~----~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~----------~~~~~~~~~~~~~~~ 98 (355)
T cd05804 42 ERERAHVEALSA----WIAGDLPKALALLEQLLDDY-----PRDL---LALKL-H----------LGAFGLGDFSGMRDH 98 (355)
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-h----------HHHHHhcccccCchh
Confidence 334455556455 48899999999999988761 2222 22222 3 222344444444444
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
..+++.. ..+.+|........+|.++..+|++++|+..+++++++. |....++..+|.++. ..|+++
T Consensus 99 ~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~-~~g~~~ 165 (355)
T cd05804 99 VARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLE-MQGRFK 165 (355)
T ss_pred HHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHH-HcCCHH
Confidence 4444443 234567777788889999999999999999999998864 333567788999996 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+.++++++...+ . ........+..+|.++..+|++++|...++.+
T Consensus 166 eA~~~l~~~l~~~~-------------------~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 166 EGIAFMESWRDTWD-------------------C----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHhhhhccC-------------------C----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988776 1 11123455778999999999999999966544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-10 Score=85.22 Aligned_cols=139 Identities=10% Similarity=-0.121 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLF-GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 15 ~~~al~~~~~~~-~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
|..+.+....++ .......+.++..+|.++ ...|++++|+..|++++.+. ++++..+.++.++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg------ 79 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSA----QSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIG------ 79 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHH------
Confidence 333444444443 223445688899999766 68999999999999999873 23444567889999
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
.++...|++++|+..+++++.+.... +......+.++.++|..+..+|++++|+..+.+++..+++..+.+++..
T Consensus 80 ----~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 80 ----LIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66699999999999999999863211 0111223334444444444999999999999999999998887776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=90.26 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
++.++++..+++++.. +|.....+..+| .+|...|++++|+..|++++.+ .|..
T Consensus 53 ~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg----------~~~~~~g~~~~A~~a~~~Al~l--------~P~~ 106 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--------NPQNSEQWALLG----------EYYLWRNDYDNALLAYRQALQL--------RGEN 106 (198)
T ss_pred hhHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence 3445555555555544 566677888899 7779999999999999999996 3455
Q ss_pred HHHHHHHHHHH-HHhhc--HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLY-QSMQK--FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..++.++|.++ ...|+ +++|...++++++.. |....++.++|.++. ..|++++|+.+++++++..+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 67788999975 67777 599999999999864 556678999999996 99999999999999999887
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=82.26 Aligned_cols=103 Identities=17% Similarity=0.051 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
++.....+.+| ..+...|++++|...|+-...+ +|.....+.+||.|+..+|+|++|+..|.
T Consensus 32 ~~~l~~lY~~A----------~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 32 TQPLNTLYRYA----------MQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYG 93 (157)
T ss_pred HHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55566677777 6668999999999999988876 57778889999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|+.+. |+.+..+.+.|.++. ..|+.+.|...|+.++....
T Consensus 94 ~A~~L~--------~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 94 RAAQIK--------IDAPQAPWAAAECYL-ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHhcC--------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhc
Confidence 999874 444567899999997 99999999999999999885
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=99.63 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------CCc----
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-----------LPE---- 74 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~---- 74 (303)
+|+.-+++++++ +|+...++..||..| ...|.-.+|+.++.+.+..-... .+.
T Consensus 337 ~ai~AL~rcl~L--------dP~NleaLmaLAVSy----tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~ 404 (579)
T KOG1125|consen 337 NAISALRRCLEL--------DPTNLEALMALAVSY----TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSF 404 (579)
T ss_pred HHHHHHHHHHhc--------CCccHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCC
Confidence 455566666655 678889999999544 79999999999999987642100 000
Q ss_pred ch------------------h--hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 75 NH------------------L--LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 75 ~~------------------~--~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+ | .-..++..|| .+|...|+|++|+++|+.||.. .|.....
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG----------VLy~ls~efdraiDcf~~AL~v--------~Pnd~~l 466 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG----------VLYNLSGEFDRAVDCFEAALQV--------KPNDYLL 466 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH----------HHHhcchHHHHHHHHHHHHHhc--------CCchHHH
Confidence 00 0 1122333344 6668999999999999999985 5677788
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.||-.+..-.+.++|+..|.+|+++. |....+.+|+|..|. .+|-|++|.++|-.||.+.+
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~m-NlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCM-NLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhh-hhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999985 888899999999999 99999999999999999988
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=79.69 Aligned_cols=102 Identities=11% Similarity=-0.051 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
++..+..+.+|..+| ..|++++|+..|+-...+ +|.....+.+|| .++..+|+|.+|+
T Consensus 32 ~~~l~~lY~~A~~ly----~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG----------~~~Q~~g~~~~AI 89 (157)
T PRK15363 32 TQPLNTLYRYAMQLM----EVKEFAGAARLFQLLTIY--------DAWSFDYWFRLG----------ECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHHhhHHHHH
Confidence 788899999998885 999999999999988776 677788999999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..|.+|+.+ +|+...++.++|.|+...|+.+.|.+.|+.|+...
T Consensus 90 ~aY~~A~~L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 90 YAYGRAAQI--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999996 24455678999999999999999999999999987
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-09 Score=99.02 Aligned_cols=213 Identities=13% Similarity=-0.048 Sum_probs=151.7
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENL-QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
++.+...+.++.+.........++ ....+...+|.++ ...|++++|..+++++++.... .+......+...+
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l 497 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA----INDGDPEEAERLAELALAELPL---TWYYSRIVATSVL 497 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence 455555666555443221101121 2345555677665 5899999999999999875211 1222244556667
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .++...|++++|...+++++...... ........++.++|.++...|++++|..++++++.+.+...
T Consensus 498 g----------~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 498 G----------EVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 7 66689999999999999999987754 22334456778999999999999999999999999987754
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+...+.....+..+|.++. ..|++++|...+.+++.+.. .. + ......++..+|.++
T Consensus 566 ~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~-------------------~~-~--~~~~~~~~~~la~~~ 622 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLS-------------------NY-Q--PQQQLQCLAMLAKIS 622 (903)
T ss_pred cccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhh-------------------cc-C--chHHHHHHHHHHHHH
Confidence 4344444555678899996 99999999999999998876 21 1 223455677899999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
...|++++|...+..+
T Consensus 623 ~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 623 LARGDLDNARRYLNRL 638 (903)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999854443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-08 Score=98.27 Aligned_cols=218 Identities=14% Similarity=0.020 Sum_probs=154.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|...+.+++...... +. ....+.++..+|.++ ...|++++|...+.+++++.....+...+.....+.
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~-g~-~~~~~~~~~~la~~~----~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQH-DV-YHYALWSLLQQSEIL----FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhh-cc-hHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 345677888888888887753 22 233456778899877 489999999999999999987753333333344455
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+| .++...|++++|...+.+++.+.... .......++..+|.++...|++++|...+.++..+...
T Consensus 578 ~la----------~~~~~~G~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 578 IRA----------QLLWEWARLDEAEQCARKGLEVLSNY---QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHH----------HHHHHhcCHHHHHHHHHHhHHhhhcc---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 667 66688999999999999999987643 12334567788999999999999999999999776433
Q ss_pred hcCCCchH---------------------------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 165 VLGKDDYE---------------------------------------VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 165 ~~~~~~~~---------------------------------------~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
. + .+.. .......+|.++. ..|++++|...+++++...
T Consensus 645 ~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 645 G-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI-LLGQFDEAEIILEELNENA 721 (903)
T ss_pred c-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Confidence 1 0 0000 0111345667776 7777777777777777665
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHH
Q psy4339 206 DNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEW 265 (303)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~ 265 (303)
+ ..+ .......++..+|.++...|+.++|.. +.+++...
T Consensus 722 ~--------------------~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 722 R--------------------SLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred H--------------------HhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4 111 223456778889999999999999999 55665443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-09 Score=89.96 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh----hhhhhhhhhhhhhHHHHhhhccc---cccHHHHHHhHHH
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL----KLFSASYSGLEYHYRDLKLFSAS---YSGLEYDYRGLIH 244 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~l~~~~~a~~~~~~~---~~~~~~~~~~la~ 244 (303)
....+...||..|. ...=+++|+.+|+++--+.|+. .-++.++.+.+++.+|+..+... .|....++.-|..
T Consensus 624 ~nie~iewl~ayyi-dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 624 CNIETIEWLAAYYI-DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred cchHHHHHHHHHHH-hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445556777776 6667778888888887776653 24677777778888887555433 3455566666666
Q ss_pred HHHhhhcHHHHHHHHHHH
Q psy4339 245 VYECLENFEKMTEFTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~ 262 (303)
+.-..| ..+|.+|..++
T Consensus 703 i~~dlg-l~d~key~~kl 719 (840)
T KOG2003|consen 703 IAGDLG-LKDAKEYADKL 719 (840)
T ss_pred Hhcccc-chhHHHHHHHH
Confidence 655555 24455554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=82.65 Aligned_cols=104 Identities=19% Similarity=0.041 Sum_probs=88.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|........+| ..+...|++++|...+++++.. .|.....+.++|.++..+|++++|..++
T Consensus 13 ~p~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 13 DSEQLEQIYALA----------YNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred ChhhHHHHHHHH----------HHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454556677888 6668999999999999998885 3445677889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |.....+..+|.++. ..|++++|+..++++++..+
T Consensus 75 ~~~~~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALD--------PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcC--------CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 9998753 555677899999997 99999999999999999888
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-10 Score=93.49 Aligned_cols=133 Identities=18% Similarity=0.103 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|+.++|+..|+++++. +|....+...++ ..+...|+++++.+
T Consensus 144 ~~~~~~~~~a~~~----~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~----------~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 144 DSARFWLALAEIY----EQLGDPDKALRDYRKALEL--------DPDDPDARNALA----------WLLIDMGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHH----HHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHH----------HHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH----------HHHHHCCChHHHHH
Confidence 3455666666544 4666777777777766665 233233444445 33356666666555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+....... +++|. .+..+|.++..+|++++|+.++++++... |....++..+|.++. ..|+.
T Consensus 202 ~l~~~~~~~-----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~-~~g~~ 264 (280)
T PF13429_consen 202 ALKRLLKAA-----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALE-QAGRK 264 (280)
T ss_dssp HHHHHHHH------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHC-----cCHHH---HHHHHHHHhcccccccccccccccccccc--------ccccccccccccccc-ccccc
Confidence 555544432 11222 34456777777777777777777766532 333445566677775 67777
Q ss_pred HHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIE 203 (303)
Q Consensus 192 ~~A~~~~~~al~ 203 (303)
++|..++++++.
T Consensus 265 ~~A~~~~~~~~~ 276 (280)
T PF13429_consen 265 DEALRLRRQALR 276 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 777777666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=88.01 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..++.++++..++++++. +|.....+..+|.+|...|++++|+..|++++.+. |....++.++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA 114 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALA 114 (198)
T ss_pred CchhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 356778888889998885 45667789999999999999999999999999875 55567789999
Q ss_pred HHHHHhhcC--HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 182 SLYNYHMLE--YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 182 ~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.++.+..|+ +++|...++++++..+ ....++..+|..+...|++++|+.++
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~dP---------------------------~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALALDA---------------------------NEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCC---------------------------CChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 975227787 5999999999998877 45567999999999999999999966
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 168 ~~a 170 (198)
T PRK10370 168 QKV 170 (198)
T ss_pred HHH
Confidence 554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.8e-10 Score=83.66 Aligned_cols=134 Identities=13% Similarity=-0.037 Sum_probs=97.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..+.|..+...+...+.. ......+..+.++| .++...|++++|+..|++++.+. ++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~l~-----~~~~ 69 (168)
T CHL00033 11 IDKTFTIVADILLRILPT------TSGEKEAFTYYRDG----------MSAQSEGEYAEALQNYYEAMRLE-----IDPY 69 (168)
T ss_pred cccccccchhhhhHhccC------CchhHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhcc-----ccch
Confidence 344566666555433221 22334677888888 66689999999999999999873 3445
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....++.++|.++...|++++|+.++++++.+.... +......+.++.++|..+. ..|++++|...+.+++....
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAI-EQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHH-HcccHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999874221 1112334455566666665 88899999999999988877
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-08 Score=78.59 Aligned_cols=170 Identities=18% Similarity=0.050 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..++..|... ...|+|.+|+..|++.+..+ +.++....+...+| .++...|++++|+..
T Consensus 4 ~~~~lY~~a~~~----~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la----------~a~y~~~~y~~A~~~ 64 (203)
T PF13525_consen 4 TAEALYQKALEA----LQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLA----------YAYYKQGDYEEAIAA 64 (203)
T ss_dssp -HHHHHHHHHHH----HHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHH----------HHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 456788888777 59999999999999988774 44666778888899 778999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHHHHHhcCCCchHHH-------
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-----------KFDEAERMQLKAIAIKEKVLGKDDYEVG------- 174 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~------- 174 (303)
+++-++.+ |+++....++..+|.++..+. ...+|...|+..+..+ |+++...
T Consensus 65 ~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 65 YERFIKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHH
T ss_pred HHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHH
Confidence 99999875 567778888899999876654 3347888888777655 4433322
Q ss_pred -------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 175 -------LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 175 -------~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
.--..+|..|. +.|++..|+..++.+++..| +.+....++..++..|.
T Consensus 135 ~l~~~la~~e~~ia~~Y~-~~~~y~aA~~r~~~v~~~yp------------------------~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 135 ELRNRLAEHELYIARFYY-KRGKYKAAIIRFQYVIENYP------------------------DTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTT-HHHHHHHHHHHHHHST------------------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCC------------------------CCchHHHHHHHHHHHHH
Confidence 22346789996 99999999999999999888 33456677889999999
Q ss_pred hhhcHHHHH
Q psy4339 248 CLENFEKMT 256 (303)
Q Consensus 248 ~~g~~~~A~ 256 (303)
..|..+.|.
T Consensus 190 ~l~~~~~a~ 198 (203)
T PF13525_consen 190 KLGLKQAAD 198 (203)
T ss_dssp HTT-HHHHH
T ss_pred HhCChHHHH
Confidence 999988443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-10 Score=85.89 Aligned_cols=164 Identities=17% Similarity=0.101 Sum_probs=129.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|....+ .+++..++ ..|+-+.+..+..++... ++.....+...| ......|+|.+
T Consensus 62 ~~p~d~~i-~~~a~a~~----~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~g----------k~~~~~g~~~~ 118 (257)
T COG5010 62 RNPEDLSI-AKLATALY----LRGDADSSLAVLQKSAIA--------YPKDRELLAAQG----------KNQIRNGNFGE 118 (257)
T ss_pred cCcchHHH-HHHHHHHH----hcccccchHHHHhhhhcc--------CcccHHHHHHHH----------HHHHHhcchHH
Confidence 35555566 77887774 788888888887775443 222223333355 55589999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..++++... .|....+++.+|.+|.+.|++++|..-|.+++++. |....+.+|+|..+. -.
T Consensus 119 A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~-L~ 181 (257)
T COG5010 119 AVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLL-LR 181 (257)
T ss_pred HHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHH-Hc
Confidence 99999999985 45567789999999999999999999999999986 333456799999997 99
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|+++.|..++..+....+ ....+..+|+.+.-.+|++++|...-
T Consensus 182 gd~~~A~~lll~a~l~~~---------------------------ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA---------------------------ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCHHHHHHHHHHHHhCCC---------------------------CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999875444 34456899999999999999998743
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-10 Score=88.32 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+-+-| +-....++|.+|+..|.+||.+ .|..+..|.|.|-+|.++|.++.|++-++.|
T Consensus 80 ~AE~LK~eG----------N~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 80 LAESLKNEG----------NKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455555556 6778999999999999999997 4556678999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
+.+. |....+|..||.+|. .+|++++|++.|++++++.|+++
T Consensus 142 l~iD--------p~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 142 LSID--------PHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HhcC--------hHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcH
Confidence 9874 888999999999997 99999999999999999999555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=78.35 Aligned_cols=103 Identities=18% Similarity=0.083 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|........+|..+ ...|++++|...+++++.. +|....++.++| .++...|++++|
T Consensus 13 ~p~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la----------~~~~~~~~~~~A 70 (135)
T TIGR02552 13 DSEQLEQIYALAYNL----YQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLA----------ACCQMLKEYEEA 70 (135)
T ss_pred ChhhHHHHHHHHHHH----HHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHHHHHHHH
Confidence 566678889999777 5899999999999998876 344567788889 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..++++++.. +|.....+..+|.++...|++++|+..++++++..
T Consensus 71 ~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 71 IDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999885 34456678899999999999999999999999875
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-10 Score=88.18 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..++.+-+-|+-. ...++|.+|+..|.+||++ +|.-+..|.+.| .+|.++|+++.|++
T Consensus 79 ~~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRA----------AAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 79 ALAESLKNEGNKL----MKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRA----------AAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHH----------HHHHHhcchHHHHH
Confidence 4567777888777 5899999999999999998 556668888999 78899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
-++.|+.+ +|....+|..||.+|..+|++++|++.|++|+++. |.......+|..+-. .++..
T Consensus 137 Dce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~-~l~e~ 199 (304)
T KOG0553|consen 137 DCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQ-KLNEP 199 (304)
T ss_pred HHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHH-HhcCC
Confidence 99999997 67889999999999999999999999999999985 444455566666654 55544
Q ss_pred H
Q psy4339 192 H 192 (303)
Q Consensus 192 ~ 192 (303)
.
T Consensus 200 ~ 200 (304)
T KOG0553|consen 200 K 200 (304)
T ss_pred C
Confidence 4
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=80.90 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhC-CCc--HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHH
Q psy4339 16 QLALKLKQVLFG-SEN--LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEE 92 (303)
Q Consensus 16 ~~al~~~~~~~~-~~~--~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 92 (303)
++|+.+.+.+.. ++- .....++..||.-| ...|-+|.|+..|....+.- .....++..+-
T Consensus 86 DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy----m~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl----- 148 (389)
T COG2956 86 DRAIRIHQTLLESPDLTFEQRLLALQQLGRDY----MAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLL----- 148 (389)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHH-----
Confidence 346666665542 222 23456888899777 68999999999998765531 11234455555
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
.+|....+|++|++..++..++-.+ +.....+..|..+|..+....+++.|...+.+|++.. |.
T Consensus 149 -----~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~ 212 (389)
T COG2956 149 -----NIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--------KK 212 (389)
T ss_pred -----HHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--------cc
Confidence 6668889999999998887776432 2355678889999999999999999999999998754 44
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh-----hhhhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL-----KLFSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIH 244 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~ 244 (303)
-..+-..+|.+.. ..|+|..|++.++.+++..++. +.+..+|..++........+ ....+. ..+-..++.
T Consensus 213 cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~ 290 (389)
T COG2956 213 CVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLAD 290 (389)
T ss_pred ceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHH
Confidence 4556678899998 9999999999999988776642 23555555555444433211 111111 123455666
Q ss_pred HHHhhhcHHHHHH-HHHHH
Q psy4339 245 VYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~-~~~~~ 262 (303)
.-....-.+.|.. ..+.+
T Consensus 291 lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 291 LIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHhhChHHHHHHHHHHH
Confidence 6666666777777 44554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-09 Score=86.14 Aligned_cols=151 Identities=9% Similarity=-0.016 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
+|+....+++. -+|....++...|.++ ...| ++++++.++.+++.. +|....+++..++++
T Consensus 55 rAL~lt~~aI~-lnP~~ytaW~~R~~iL----~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l----- 116 (320)
T PLN02789 55 RALDLTADVIR-LNPGNYTVWHFRRLCL----EALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLA----- 116 (320)
T ss_pred HHHHHHHHHHH-HCchhHHHHHHHHHHH----HHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHH-----
Confidence 34444444332 2677888999999888 4677 689999999999876 455556777778444
Q ss_pred hhHHHHhhhh--HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 96 DSNELISVQF--YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 96 ~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
...|+ +++++.++.++++. +|....++...|.++...|++++|++++.++++.. |..
T Consensus 117 -----~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N 175 (320)
T PLN02789 117 -----EKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRN 175 (320)
T ss_pred -----HHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCc
Confidence 44554 36778888888875 46667899999999999999999999999999863 455
Q ss_pred HHHHHHHHHHHHHhh---cCH----HHHHHHHHHHHHhhhh
Q psy4339 174 GLSVGHLASLYNYHM---LEY----HKAEKLYFRSIEINDN 207 (303)
Q Consensus 174 ~~~~~~la~~~~~~~---g~~----~~A~~~~~~al~~~~~ 207 (303)
..+++..+.+.. .. |.+ ++++.+..+++.+.|+
T Consensus 176 ~sAW~~R~~vl~-~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 176 NSAWNQRYFVIT-RSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred hhHHHHHHHHHH-hccccccccccHHHHHHHHHHHHHhCCC
Confidence 678888888885 65 333 4788888899988874
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-08 Score=79.51 Aligned_cols=176 Identities=8% Similarity=-0.085 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..++..|... ...|+|++|+..|++.+... +..+....+...+| .+|...+++++|+..
T Consensus 31 ~~~~~Y~~A~~~----~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la----------~ayy~~~~y~~A~~~ 91 (243)
T PRK10866 31 PPSEIYATAQQK----LQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLI----------YAYYKNADLPLAQAA 91 (243)
T ss_pred CHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHH----------HHHHhcCCHHHHHHH
Confidence 455677778666 48999999999999988763 34566667788899 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh------------------cHHHHHHHHHHHHHHHHHhcCCCchHH-
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ------------------KFDEAERMQLKAIAIKEKVLGKDDYEV- 173 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~~~~~- 173 (303)
+++.++.. |++|....++..+|.++...+ ...+|+..+++.++.+ |+++..
T Consensus 92 ~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~ 161 (243)
T PRK10866 92 IDRFIRLN-----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTT 161 (243)
T ss_pred HHHHHHhC-----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHH
Confidence 99999974 678888889999998865443 1245667777766654 333322
Q ss_pred -------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHH
Q psy4339 174 -------------GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYR 240 (303)
Q Consensus 174 -------------~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~ 240 (303)
+.--..+|..|. +.|+|.-|+.-++.+++-.| +.+....++.
T Consensus 162 ~A~~rl~~l~~~la~~e~~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp------------------------~t~~~~eal~ 216 (243)
T PRK10866 162 DATKRLVFLKDRLAKYELSVAEYYT-KRGAYVAVVNRVEQMLRDYP------------------------DTQATRDALP 216 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHCC------------------------CCchHHHHHH
Confidence 122346788896 99999999999999998888 4456778899
Q ss_pred hHHHHHHhhhcHHHHHHHHHHH
Q psy4339 241 GLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 241 ~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++..|...|..++|..+.+.+
T Consensus 217 ~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 217 LMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999999877665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=77.81 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+++.+| ..+...|++++|+..+.+++... ++++....++..+|.++...|++++|+.++++++.
T Consensus 3 ~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAA----------LLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4556667 66689999999999999998752 34455567888999999999999999999999987
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 161 IKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. ++++....++..+|.++. ..|++++|+.++++++...|
T Consensus 68 ~~-----p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 68 KY-----PKSPKAPDALLKLGMSLQ-ELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HC-----CCCCcccHHHHHHHHHHH-HhCChHHHHHHHHHHHHHCc
Confidence 64 455556678999999997 99999999999999999888
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-08 Score=79.15 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=153.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch--hhhHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH--LLLTSAH 83 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~ 83 (303)
..|+.+.+.|+.|+++.... .|..-...++..||..+ ....++++|+-+..+|.++.....-++. .....++
T Consensus 136 s~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf----~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLF----AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHH----HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 34666777777777775543 23233457888899544 7899999999999999999776531221 1244556
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
+.++ ..+..+|+...|.++.+++.++.-+. ++.+..+....-+|.+|...|+.+.|..-|+.|..+..
T Consensus 210 yhma----------ValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 210 YHMA----------VALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHH----------HHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 6666 67799999999999999999997665 57788888999999999999999999999999998876
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHH-----HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHK-----AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
.. .+......++...|.+.. ...-..+ |++.-++++++.. + .|-.+ .+..+
T Consensus 278 ~~--gdrmgqv~al~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~-------------------~-IG~K~-~vlK~ 333 (518)
T KOG1941|consen 278 SL--GDRMGQVEALDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVAS-------------------S-IGAKL-SVLKL 333 (518)
T ss_pred hh--hhhHHHHHHHHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHH-------------------H-hhhhH-HHHHH
Confidence 64 344445566777777775 5555555 8888888888887 2 22221 35566
Q ss_pred HHhHHHHHHhhhcHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~ 257 (303)
+..++.+|..+|.-++-..
T Consensus 334 hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 334 HCRLASIYRSKGLQDELRA 352 (518)
T ss_pred HHHHHHHHHhccchhHHHH
Confidence 7788888888876655443
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-11 Score=93.68 Aligned_cols=165 Identities=11% Similarity=-0.031 Sum_probs=121.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
.|+.++.+.+ +..|..+..+..++.++ ..++++++|.++|+.+++. +|....+..-+|
T Consensus 274 ~AL~~~~~gl-d~fP~~VT~l~g~ARi~----eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia--------- 331 (478)
T KOG1129|consen 274 RALLVIGEGL-DSFPFDVTYLLGQARIH----EAMEQQEDALQLYKLVLKL--------HPINVEAIACIA--------- 331 (478)
T ss_pred HHHHHHhhhh-hcCCchhhhhhhhHHHH----HHHHhHHHHHHHHHHHHhc--------CCccceeeeeee---------
Confidence 4566655544 23566777888888877 6899999999999998876 333333333344
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
..|+..++.+-|+.+|++.+.+ |..+| ..+.|+|.|+..-++++-++..|++|+.... ++...+.+
T Consensus 332 -~~yfY~~~PE~AlryYRRiLqm-----G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDv 397 (478)
T KOG1129|consen 332 -VGYFYDNNPEMALRYYRRILQM-----GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADV 397 (478)
T ss_pred -eccccCCChHHHHHHHHHHHHh-----cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----Ccchhhhh
Confidence 6667788899999999998885 33344 4578899999999999999999999988763 33556788
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYH 221 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~ 221 (303)
|+|+|.+.. ..|++.-|..+|+-++...+ +-+.++++|+-+
T Consensus 398 WYNlg~vaV-~iGD~nlA~rcfrlaL~~d~---~h~ealnNLavL 438 (478)
T KOG1129|consen 398 WYNLGFVAV-TIGDFNLAKRCFRLALTSDA---QHGEALNNLAVL 438 (478)
T ss_pred hhccceeEE-eccchHHHHHHHHHHhccCc---chHHHHHhHHHH
Confidence 899999988 89999999888888876544 556667776533
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=88.63 Aligned_cols=187 Identities=7% Similarity=-0.026 Sum_probs=132.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+++.|..++.++.+.. ++. ... .....+ ..+...|++++|...+++..+. .
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a----------~l~l~~g~~~~Al~~l~~~~~~--------~ 183 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA-----DND-QLP-VEITRV----------RIQLARNENHAARHGVDKLLEV--------A 183 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 48999999999999997651 111 111 111224 5568999999999999998885 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------------------HH---------------hcCCCchHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-------------------EK---------------VLGKDDYEVG 174 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------~~---------------~~~~~~~~~~ 174 (303)
|....++..++.+|...|++++|++.+.+..+.. .. ..+...|...
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 4444567788999999999999997776554210 00 0011123344
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh--hhhHHHH---hhhccccccHHHHHHhHHHHHHhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL--EYHYRDL---KLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l--~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.+...+|..+. ..|+.++|...++++++ .+.++.+...+..+ +...+++ +.+.+.+|+....+..+|.++...
T Consensus 264 ~~~~~~A~~l~-~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 264 ALQVAMAEHLI-ECDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 56678899998 99999999999999998 45466555554444 4444443 445566888888899999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|++++|.++++.+
T Consensus 342 ~~~~~A~~~le~a 354 (398)
T PRK10747 342 GEWQEASLAFRAA 354 (398)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999966555
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=92.91 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
....+.+++..+...|++.+|++++....... ....+..|..+|.+|. .+|.+++|+++|++++...|
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~-~l~e~e~A~e~y~kvl~~~p---- 480 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYM-ELGEYEEAIEFYEKVLILAP---- 480 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHH-HHhhHHHHHHHHHHHHhcCC----
Confidence 34456677777777777777777776655321 1223556778888887 78888888888888877766
Q ss_pred hhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 211 FSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 211 ~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+...+...|+.++..+|++++|.+....
T Consensus 481 -----------------------~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 481 -----------------------DNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred -----------------------CchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 5556677888888888888888774433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=77.59 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...+..+..+..+|..+ ...|++++|+.+|+++++... +.+....++.++| .++...|+++
T Consensus 29 ~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la----------~~~~~~g~~~ 89 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSA----QADGEYAEALENYEEALKLEE-----DPNDRSYILYNMG----------IIYASNGEHD 89 (172)
T ss_pred ccHhhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHH----------HHHHHcCCHH
Confidence 44567788999999766 589999999999999998732 2333457888899 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-------KFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
+|+.++++++... |.....+..+|.++...| ++++|+..++++++..++....++.
T Consensus 90 ~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 90 KALEYYHQALELN--------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 9999999999962 334555667777777655 4667777777777776665544433
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=100.85 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=180.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|.+.+|.. .-+++.......+.-+|..+..+..++ ..+...|++++|+.+-+++.-+.++..|.++
T Consensus 943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La----------~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLA----------KLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHH----------HHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 36888898998 888888988888888999999999999 6669999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+.....+.+++......++...|...+.++..+..-.+|+++|..+.+..+++.++. ..++++.|+.+.+.|++...
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~-~v~e~d~al~~le~A~a~~~-- 1088 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL-GVEEADTALRYLESALAKNK-- 1088 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999888889999999999999999997 99999999999999999888
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccc
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNELNEPECHIDY 283 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (303)
+..++.......++..++.++...|++..|....+.. ..+....+|.+|+.+.+.
T Consensus 1089 -----------------~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t---~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1089 -----------------KVLGPKELETALSYHALARLFESMKDFRNALEHEKVT---YGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred -----------------hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH---HHHHHHhhCCCcccchhh
Confidence 7788777788889999999999999999999955444 456667888888866553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-09 Score=89.36 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|+.+..+..+|..+ ...|+.+.+...+.++....... ..........| ..+...|++++|
T Consensus 2 dp~~~~a~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a----------~~~~~~g~~~~A 62 (355)
T cd05804 2 DPDFALGHAAAALLL----LLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEA----------LSAWIAGDLPKA 62 (355)
T ss_pred CCccHHHHHHHHHHH----HhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHH----------HHHHHcCCHHHH
Confidence 577888999999544 68899999988888877764432 22233344455 455889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
...++++++.. |+++ .++.. +..+...|++..+.....+++.. ..+.+|........+|.++. .+|
T Consensus 63 ~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~-~~G 128 (355)
T cd05804 63 LALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLE-EAG 128 (355)
T ss_pred HHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHH-HcC
Confidence 99999999852 2222 33333 66666666666665555555543 23566777888889999998 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++++|+..+++++++.| ....++..+|.++...|++++|..+++.
T Consensus 129 ~~~~A~~~~~~al~~~p---------------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 129 QYDRAEEAARRALELNP---------------------------DDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred CHHHHHHHHHHHHhhCC---------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999887 3355688899999999999999996543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-09 Score=98.03 Aligned_cols=190 Identities=24% Similarity=0.158 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
.-+++..+....+..||+.+.++..|+..++ ..|++++|+.+-.++.-+.++..|.++|.....+.+++
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~----~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla------- 1022 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN----RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA------- 1022 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh----hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH-------
Confidence 4466668888888899999999999998885 99999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
......++...|+..+.++..+..-..++++|..+.+..+++.++...++++.|+++.+.|....++..|+.+..++
T Consensus 1023 ---l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1023 ---LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred ---HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 44477779999999999999988777888999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
..+..++..+. ..|++..|....+....+.. ..++.++.....+
T Consensus 1100 ~~~~~~a~l~~-s~~dfr~al~~ek~t~~iy~-------------------~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1100 LSYHALARLFE-SMKDFRNALEHEKVTYGIYK-------------------EQLGPDHSRTKES 1143 (1236)
T ss_pred hHHHHHHHHHh-hhHHHHHHHHHHhhHHHHHH-------------------HhhCCCcccchhh
Confidence 99999999998 99999999999999999999 8888887765433
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-08 Score=81.00 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.|+.+..+..-+.||...|+..+|+.-++.+-++. . +....++.++.++ |..|+.+.++.-.++++++.|+
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~-Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLL-YTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHH-HhhhhHHHHHHHHHHHHccCcc
Confidence 45556667777888888888888888887776653 2 2335688999999 5999999999999999999998
Q ss_pred hhhhhhhhhhh-------hhhH-----------------------------------------------HHH---hhhcc
Q psy4339 208 LKLFSASYSGL-------EYHY-----------------------------------------------RDL---KLFSA 230 (303)
Q Consensus 208 ~~~~~~~~~~l-------~~~~-----------------------------------------------~a~---~~~~~ 230 (303)
|...--.|..+ +... +|+ +..-.
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 76544444333 1111 122 11122
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
..|+.+.++...|.+|.....|+.|+. |.++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356678889999999999999999999 54443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-08 Score=85.72 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=106.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH--------
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLS-------- 120 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 120 (303)
...|++++|+..+++..+. .|....++..++ .+|...|++++|.+.+.+..+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~----------~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 164 LARNENHAARHGVDKLLEV--------APRHPEVLRLAE----------QAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 5899999999999998776 344446666677 66789999999996666554310
Q ss_pred -----------HH---------------hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---------h
Q psy4339 121 -----------LK---------------HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK---------V 165 (303)
Q Consensus 121 -----------~~---------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~ 165 (303)
.. ......|....+...+|..+...|+.++|...++++++.... .
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l 305 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL 305 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence 00 001122334556778899999999999999999988762100 0
Q ss_pred --------------cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 166 --------------LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 166 --------------~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
.-..+|+....+..+|.++. ..|++++|.++|+++++..|
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P------------------------- 359 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRP------------------------- 359 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC-------------------------
Confidence 00112222334445555554 55555555555555554444
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+. ..+..++.++...|+.++|..+++
T Consensus 360 --~~-~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 360 --DA-YDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred --CH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 335679999999999999999554
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=86.67 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh--C----------------CcchhhhHHHHHHHHHHHHHHh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL--L----------------PENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~~~~~~~ 94 (303)
++.++..+|..+ ..+++++.|+.+|++++.-.+.. + .-..|..+.....-|
T Consensus 297 Iak~~~r~g~a~----~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kG------- 365 (539)
T KOG0548|consen 297 IAKALARLGNAY----TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKG------- 365 (539)
T ss_pred HHHHHHHhhhhh----hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHH-------
Confidence 566777788766 68899999999999988654330 0 011222233333334
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+.++..|+|..|+..|.+|+.. .|.....|.|.|-||..+|.+..|+...+.++++ +|...
T Consensus 366 ---ne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~ 426 (539)
T KOG0548|consen 366 ---NEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFI 426 (539)
T ss_pred ---HHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHH
Confidence 7779999999999999998884 4777889999999999999999999999999986 48888
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..|..-|.++. .+.+|++|.+.|+++++..++..
T Consensus 427 kgy~RKg~al~-~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 427 KAYLRKGAALR-AMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999997 99999999999999999888433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-08 Score=72.66 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=95.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++...+...+++.++- .++.+....+...+| ..+...|++++|...|++++... +++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA----------~~~~~~g~~~~A~~~l~~~~~~~-----~d~~ 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLA----------KAAYEQGDYDEAKAALEKALANA-----PDPE 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhhC-----CCHH
Confidence 578888877766665543 234445566677778 77799999999999999999842 3444
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
....+...+|.++..+|++++|+..++.. ++.+........+|.++. ..|++++|+..|++|+
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYL-AQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHH-HCCCHHHHHHHHHHhC
Confidence 55667889999999999999999998652 233445667788999997 9999999999999875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=68.91 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~ 206 (303)
+.++..+|.++...|++++|+.+|++++++. |....+++++|.++. .+| ++++|+..+++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 5678999999999999999999999999874 666789999999997 999 79999999999998865
|
... |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-08 Score=83.27 Aligned_cols=218 Identities=10% Similarity=-0.038 Sum_probs=141.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|.+...++.+. .|.....+...|.+. ..+|+++.|..++.++.+.. +++. ..+..
T Consensus 97 ~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa----~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~ 157 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAA----QQRGDEARANQHLEEAAELA-----GNDN--ILVEI 157 (409)
T ss_pred CCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHH
Confidence 34566777777666554 122223344455555 47899999999999886541 1111 11222
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH---
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI--- 161 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 161 (303)
..+ .++...|+++.|...+++.++. .|....++..++.++...|++++|.+.+.+..+.
T Consensus 158 ~~a----------~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 158 ART----------RILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 234 4557889999999998888775 2333456778889999999999888877666532
Q ss_pred ----H---------------HH---------hcCCCch----HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 162 ----K---------------EK---------VLGKDDY----EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 162 ----~---------------~~---------~~~~~~~----~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
. .. .. ...| ........+|..+. ..|++++|...++++++..++++
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~-~~~p~~~~~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW-KNQPRHRRHNIALKIALAEHLI-DCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHCCHHHhCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcc
Confidence 0 00 00 0112 24567788899998 99999999999999999888765
Q ss_pred hhh----hhhhhh--hh---hHHHHhhhccccccHH--HHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 210 LFS----ASYSGL--EY---HYRDLKLFSASYSGLE--YDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 210 ~~~----~~~~~l--~~---~~~a~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
... ..+..+ +. ..+.++..-..+|+.. .....+|.++...|++++|.++++.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 311 111111 12 2233344445566666 7788999999999999999998773
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=74.36 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=84.0
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
...+..+..+.++| ..+...|++++|+.+|++++.... +++....++.++|.++...|++++|+.
T Consensus 29 ~~~~~~a~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 29 NKKAKEAFVYYRDG----------MSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred ccHhhhHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566778899999 666999999999999999998642 334456789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHhhh
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-------~~~A~~~~~~al~~~~ 206 (303)
++++++.+. |.....+..+|.++. ..|+ +++|+..++++++...
T Consensus 94 ~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 94 YYHQALELN--------PKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHHHHHHhC--------cccHHHHHHHHHHHH-HcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 999999863 444566778888886 7665 5555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=72.61 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..++.+|..+ ...|++++|+..+.+++... ++++....++..+| .++...|++++|+.+++
T Consensus 3 ~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 3 EAYYDAALLV----LKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLG----------EAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHH----------HHHHhhccHHHHHHHHH
Confidence 4678888777 59999999999999998762 34444567788899 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++... ++++....++..+|.++..+|++++|+.+++++++..
T Consensus 64 ~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 64 AVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 999853 4455556778999999999999999999999998864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.1e-09 Score=68.33 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
+|+++.|+.+++++++... .++ ....+..+|.||...|+|++|+..+++ .... +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 6899999999999999742 123 455677899999999999999999998 4332 334566677899
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q psy4339 183 LYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~a 201 (303)
++. .+|++++|+..++++
T Consensus 67 ~~~-~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLL-KLGKYEEAIKALEKA 84 (84)
T ss_dssp HHH-HTT-HHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHhcC
Confidence 996 999999999999875
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=84.14 Aligned_cols=175 Identities=15% Similarity=0.008 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....+...-+.|+ ...|++++|.+.--..+++ ++.....+..-| .++...++.+.|.
T Consensus 166 pac~~a~~lka~cl----~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg----------~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 166 PACFKAKLLKAECL----AFLGDYDEAQSEAIDILKL--------DATNAEALYVRG----------LCLYYNDNADKAI 223 (486)
T ss_pred chhhHHHHhhhhhh----hhcccchhHHHHHHHHHhc--------ccchhHHHHhcc----------cccccccchHHHH
Confidence 55555666666666 6899999998766655554 445566667777 6668899999999
Q ss_pred HHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFG----ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 111 ~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
..|++++.+-..... ...|......-.-|+-..+.|++.+|.++|.++|.+... +....+..|.+.|.+..
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~- 298 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNI- 298 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhc-
Confidence 999999986322110 012334455667788889999999999999999988632 23446788999999998
Q ss_pred hhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 187 HMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
++|+.++|+.-++.++++.+ ....++...|.++...++|++|.+.+
T Consensus 299 rLgrl~eaisdc~~Al~iD~---------------------------syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALKIDS---------------------------SYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred ccCCchhhhhhhhhhhhcCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 56667777777777777777777733
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-08 Score=71.27 Aligned_cols=120 Identities=15% Similarity=0.000 Sum_probs=92.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..++...+...+++.+.- .++.+....+...+|.++...|++++|...|++++... ++++....+...+|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 466777776666665553 24455566788899999999999999999999998742 34455566788999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
.++. .+|++++|+..++.+ .+ .+....+...+|.++...|++++|...++
T Consensus 93 ~~~~-~~~~~d~Al~~L~~~---~~-------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILL-QQGQYDEALATLQQI---PD-------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHH-HcCCHHHHHHHHHhc---cC-------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9997 999999999998652 11 22345567789999999999999999543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-08 Score=90.53 Aligned_cols=192 Identities=8% Similarity=-0.081 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.|..+...+..+.+. ...|+++.|+..++++++.. +.++. .++ .+. .++...|+.++|
T Consensus 30 ~p~~~~~~y~~aii~----~r~Gd~~~Al~~L~qaL~~~-----P~~~~--av~-dll----------~l~~~~G~~~~A 87 (822)
T PRK14574 30 NPAMADTQYDSLIIR----ARAGDTAPVLDYLQEESKAG-----PLQSG--QVD-DWL----------QIAGWAGRDQEV 87 (822)
T ss_pred CccchhHHHHHHHHH----HhCCCHHHHHHHHHHHHhhC-----ccchh--hHH-HHH----------HHHHHcCCcHHH
Confidence 344555667777555 58999999999999998772 22221 111 333 444677999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+.++++++. + .+.....+..+|.++..+|++++|++.|+++++.. |....++..++.++. ..+
T Consensus 88 ~~~~eka~~-------p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~-~~~ 150 (822)
T PRK14574 88 IDVYERYQS-------S-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQA-DAG 150 (822)
T ss_pred HHHHHHhcc-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHh-hcC
Confidence 999999882 1 22233445566889999999999999999998764 333445567788887 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhh---hhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLF---SASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~---~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+.++|+..++++....+..... +..+...+...+|+ +..-...|.....+..+..+....|-...|.+..+
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999988877753321 11111112222343 33333456666677777777777777777776443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=78.74 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~ 110 (303)
+...++..+-.++ ...+++++|+..+.+++++ +|....++...+.+ +...| .+++++
T Consensus 35 ~~~~a~~~~ra~l----~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~i----------L~~L~~~l~eeL 92 (320)
T PLN02789 35 EFREAMDYFRAVY----ASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLC----------LEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHH----------HHHcchhHHHHH
Confidence 3444554444344 5788999999999999988 56666788888844 46666 689999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF--DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
..+.+++.. +|....++++.+.++..+|+. ++++.++.+++++. |....++...|.++. ..
T Consensus 93 ~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~-~l 155 (320)
T PLN02789 93 DFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLR-TL 155 (320)
T ss_pred HHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHH-Hh
Confidence 999999985 455566789999999888874 67888888888753 666789999999998 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|++++.+++++.+
T Consensus 156 ~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDV 173 (320)
T ss_pred hhHHHHHHHHHHHHHHCC
Confidence 999999999999998877
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-07 Score=80.51 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh-
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK- 209 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~- 209 (303)
...+++.+|..|...|++++|+++.++||+. .|.....+...|.++. +.|++.+|...++.|-.+...+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHH
Confidence 3577889999999999999999999999975 3777889999999998 99999999999999998887533
Q ss_pred ---hhhhhhhhhhhhHHHHhh---hcccc--cc-------HHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHHhhh
Q psy4339 210 ---LFSASYSGLEYHYRDLKL---FSASY--SG-------LEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILRETN 272 (303)
Q Consensus 210 ---~~~~~~~~l~~~~~a~~~---~~~~~--~~-------~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~ 272 (303)
..+..+.+-+...+|.+. +.... |. ..+.....|.+|.++|++..|++ +.....++.+..+.+
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 234444444556666432 22221 11 23445678999999999999999 666666666655433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-08 Score=81.74 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
..|.++--.++.. ++..+.++.--|.++| ..++.+.|+.+|++++.+ ++++.....+.... ..+..+..
T Consensus 186 ~~a~~ea~~ilkl-d~~n~~al~vrg~~~y----y~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~-k~le~~k~ 254 (486)
T KOG0550|consen 186 DEAQSEAIDILKL-DATNAEALYVRGLCLY----YNDNADKAINHFQQALRL-----DPDHQKSKSASMMP-KKLEVKKE 254 (486)
T ss_pred hhHHHHHHHHHhc-ccchhHHHHhcccccc----cccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhH-HHHHHHHh
Confidence 3344443333332 3556777777887786 899999999999999987 33443322222211 11111211
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+-....|+|.+|.+.|..+|.+-.. +....+..|.+.|.+...+|+..+|+.-++.|+.+. +..+.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syik 322 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIK 322 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHH
Confidence 116668999999999999999997432 233567889999999999999999999999999875 77889
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++...|.++. .+++|++|.+.+++|++...+
T Consensus 323 all~ra~c~l-~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHL-ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc
Confidence 9999999998 999999999999999987764
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=82.55 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh--
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL-- 210 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 210 (303)
..+...|..+...++.++|..++.++-.+. |.....++..|.++. ..|++.+|.+.|..|+.+.|+|+.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 345577888888889999999999987765 777889999999998 999999999999999999998874
Q ss_pred --hhhhhhhhhhhHHH-----HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 211 --FSASYSGLEYHYRD-----LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 211 --~~~~~~~l~~~~~a-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++..+..+|.-.-+ +...-.-+|....+|+.+|.++..+|+.+.|.+++++.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 45555555422111 12222346777888999999999999999999977665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-08 Score=83.48 Aligned_cols=201 Identities=10% Similarity=-0.019 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH--HH---
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA--LI--- 89 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~--- 89 (303)
+++|++..+.... ..|+...++..++.++ ...|++++|...+.+..+.. . .+.+.......... .+
T Consensus 169 ~~~Al~~l~~l~~-~~P~~~~~l~ll~~~~----~~~~d~~~a~~~l~~l~k~~--~--~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 169 LHAARHGVDKLLE-MAPRHKEVLKLAEEAY----IRSGAWQALDDIIDNMAKAG--L--FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHcC--C--CCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 2355556777888666 69999999999888776541 0 11111111100000 00
Q ss_pred ------------HHHHh--------h--hh-HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 90 ------------LEEIA--------L--DS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 90 ------------~~~~~--------~--~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
+.... + .. ..+...|++++|.+.++++++.. ++++..... .-........+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~ 313 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPE 313 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCC
Confidence 00000 0 00 34455555555555555555531 111111000 11111222234
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR--SIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
+.+++++.++++++.. +++|. ......+|.++. ..|++++|.++|++ +++..|
T Consensus 314 ~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p------------------ 368 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLM-KHGEFIEAADAFKNVAACKEQL------------------ 368 (409)
T ss_pred ChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCC------------------
Confidence 4455555555544322 22232 245556677774 67777777777763 333333
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEW 265 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~ 265 (303)
+... +..+|.++...|+.++|.++ .+.+...
T Consensus 369 ---------~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 369 ---------DAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred ---------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3333 55899999999999999994 4544333
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-08 Score=80.74 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=88.3
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|..|+.+-+++++. +|.....+...| ..+...|+.++|.-.|+.|..+ -|
T Consensus 312 ~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG----------~lL~~~~R~~~A~IaFR~Aq~L--------ap 365 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDS--------EPRNHEALILKG----------RLLIALERHTQAVIAFRTAQML--------AP 365 (564)
T ss_pred hhhhHHHHHHHHHHHhcc--------CcccchHHHhcc----------HHHHhccchHHHHHHHHHHHhc--------ch
Confidence 455555555555555554 222233444444 3335555555555555555554 23
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh------cC----------------------CCchHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV------LG----------------------KDDYEVGLSVGHLA 181 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~----------------------~~~~~~~~~~~~la 181 (303)
-...+|..|-.+|...|++.||...-..++...... +| .-.|....+...+|
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 334455555555555555555555554444433110 00 01244455556666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH-HH
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF-TN 260 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~ 260 (303)
.++. ..|++.+++.++++.+.+.+ + ...+..||.++..++.+.+|.++ ..
T Consensus 446 EL~~-~Eg~~~D~i~LLe~~L~~~~---------------------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 446 ELCQ-VEGPTKDIIKLLEKHLIIFP---------------------------D-VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHH-hhCccchHHHHHHHHHhhcc---------------------------c-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6665 66667777777766666555 2 23477899999999999999994 44
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
++
T Consensus 497 AL 498 (564)
T KOG1174|consen 497 AL 498 (564)
T ss_pred HH
Confidence 44
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=86.02 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+|++|+..|.++++. .|....++.++|.+|..+|++++|+..+++++.+. |....++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~~~a~ 73 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSLAKAY 73 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHH
Confidence 5557899999999999999996 34456688999999999999999999999999874 5556789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+|.++. .+|++++|+..|++++.+.+
T Consensus 74 ~~lg~~~~-~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 74 LRKGTACM-KLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHhCC
Confidence 99999996 99999999999999999888
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=78.51 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=107.7
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|.....+..+|... ...|+|.+|+..++++... .|.-+..++.+| .+|.+.|++++
T Consensus 95 ~~~~d~~ll~~~gk~~----~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lg----------aaldq~Gr~~~ 152 (257)
T COG5010 95 AYPKDRELLAAQGKNQ----IRNGNFGEAVSVLRKAARL--------APTDWEAWNLLG----------AALDQLGRFDE 152 (257)
T ss_pred cCcccHHHHHHHHHHH----HHhcchHHHHHHHHHHhcc--------CCCChhhhhHHH----------HHHHHccChhH
Confidence 3444555665577666 6999999999999999887 555678889999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|..-|.+++++.. +. ..+.+|+|..+.-.|+++.|..++..+... .+....+-.|++.+.. .+
T Consensus 153 Ar~ay~qAl~L~~-----~~---p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~-~~ 215 (257)
T COG5010 153 ARRAYRQALELAP-----NE---PSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVG-LQ 215 (257)
T ss_pred HHHHHHHHHHhcc-----CC---chhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHh-hc
Confidence 9999999999842 23 346789999999999999999999988653 1334456789999998 99
Q ss_pred cCHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFR 200 (303)
Q Consensus 189 g~~~~A~~~~~~ 200 (303)
|++++|.....+
T Consensus 216 g~~~~A~~i~~~ 227 (257)
T COG5010 216 GDFREAEDIAVQ 227 (257)
T ss_pred CChHHHHhhccc
Confidence 999999887654
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=84.35 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+...|+.+| ..|++++|+..+.+++.. +|....++..|| .+|..+|+.++|....
T Consensus 139 l~~ll~eAN~lf----arg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~----------~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 139 LRQLLGEANNLF----ARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLG----------EIYEQRGDIEKALNFW 196 (895)
T ss_pred HHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh--------CccchhhHHHHH----------HHHHHcccHHHHHHHH
Confidence 567777887774 789999999999999887 566778999999 6669999999999998
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~ 193 (303)
..|-.+. +.+ ...|..+|....++|++++|.-||.+|++.. |.........+.+|. +.|++..
T Consensus 197 llAAHL~-----p~d---~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~-~~G~~~~ 259 (895)
T KOG2076|consen 197 LLAAHLN-----PKD---YELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQ-KTGDLKR 259 (895)
T ss_pred HHHHhcC-----CCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHH-HhChHHH
Confidence 8887752 222 3678899999999999999999999999864 555778889999998 9999999
Q ss_pred HHHHHHHHHHhhhhh------h---hhhhhhhhhhhhHHHHhh---hc--cccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNL------K---LFSASYSGLEYHYRDLKL---FS--ASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 194 A~~~~~~al~~~~~~------~---~~~~~~~~l~~~~~a~~~---~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|...+.+.+...|.. . .++..+.-.....+|.+. .. .........+..++.++.+...++.|....
T Consensus 260 Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 999999999988821 0 112222222111222211 11 122233445778999999999999999844
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-07 Score=88.18 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+...| ...|++++|...|++..+. +.+....+++.+. ..|...|++++|...|.
T Consensus 580 vTynaLI~ay----~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI----------~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 580 ITVGALMKAC----ANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAV----------NSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHH----HHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHH----------HHHHhcCCHHHHHHHHH
Confidence 4566666556 5889999999999876553 1111234555555 66678888888888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+..+. .-.|+ ..+|..+...|...|++++|..++.++.+. .-.|. ..++..+...|. +.|++++|
T Consensus 639 eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G~~pd-~~tynsLI~ay~-k~G~~eeA 703 (1060)
T PLN03218 639 DMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------GIKLG-TVSYSSLMGACS-NAKNWKKA 703 (1060)
T ss_pred HHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHH-hCCCHHHH
Confidence 76652 11222 346777778888888888888888776542 11122 346777777776 78888888
Q ss_pred HHHHHHHHHh--hhhhh---hhhhhhhhhhhhHHHHhhhc----c-ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 195 EKLYFRSIEI--NDNLK---LFSASYSGLEYHYRDLKLFS----A-SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~--~~~~~---~~~~~~~~l~~~~~a~~~~~----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..+|++.... .|+.. .+...+...+.+.+|++.+. . -.|+ ...+..+-..+.+.|++++|.+++..+
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888776542 12111 12222223344445543222 1 1233 234566667778888888888755443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=84.12 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+...|... +..|+|++|+.+|.++++. +|....++.++| .++...|++++|+..++++
T Consensus 5 l~~~a~~a----~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a----------~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEA----FVDDDFALAVDLYTQAIDL--------DPNNAELYADRA----------QANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHH
Confidence 34456566 4899999999999999987 455567888999 7779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+.+ .|....++.++|.++..+|++++|+..|++++.+. ++++ .+...++.+..
T Consensus 63 l~l--------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~---~~~~~l~~~~~ 115 (356)
T PLN03088 63 IEL--------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA-----PGDS---RFTKLIKECDE 115 (356)
T ss_pred HHh--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHH
Confidence 996 34556789999999999999999999999999875 3333 34455565554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-08 Score=68.13 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|+.++|+.+|++++.. +.+.+....++..+|..+..+|++++|+..+++++.-. ++++......
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~ 78 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALR 78 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHH
Confidence 6668999999999999999983 44566677899999999999999999999999987643 3333355566
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
..++.++. ..|++++|+..+-.++.
T Consensus 79 ~f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 77888996 99999999999988775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-07 Score=86.87 Aligned_cols=134 Identities=6% Similarity=-0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+...| .+.|++++|+..|.+..+. .-.|+ ..+++.+. ..|...|++++|.+.+.
T Consensus 508 vTynaLI~gy----~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI----------~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 508 HTFGALIDGC----ARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALI----------SACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHHHHHHHHH----HHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHH----------HHHHHCCCHHHHHHHHH
Confidence 3444454444 4666666666666554332 11121 12333333 44455555555555555
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+...... +-.|+ ..++..+...|.+.|++++|.+.|++..+. +.+....+++.+...|. +.|++++|
T Consensus 567 eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~-k~G~~deA 633 (1060)
T PLN03218 567 EMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCS-QKGDWDFA 633 (1060)
T ss_pred HHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHH-hcCCHHHH
Confidence 5433100 00111 234445555555555555555555544331 00111233444444444 45555555
Q ss_pred HHHHHHHH
Q psy4339 195 EKLYFRSI 202 (303)
Q Consensus 195 ~~~~~~al 202 (303)
..+|++..
T Consensus 634 l~lf~eM~ 641 (1060)
T PLN03218 634 LSIYDDMK 641 (1060)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-07 Score=74.49 Aligned_cols=200 Identities=12% Similarity=-0.016 Sum_probs=147.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 27 GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 27 ~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
...+|..+.-+..+|..+ ...|++..|+..|..|++. +|....+++..| .+|...|+-
T Consensus 31 ~~~~~advekhlElGk~l----la~~Q~sDALt~yHaAve~--------dp~~Y~aifrRa----------T~yLAmGks 88 (504)
T KOG0624|consen 31 STASPADVEKHLELGKEL----LARGQLSDALTHYHAAVEG--------DPNNYQAIFRRA----------TVYLAMGKS 88 (504)
T ss_pred hcCCHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHH----------HHHhhhcCC
Confidence 456788889999999888 5999999999999999886 677778888888 777999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH------------
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG------------ 174 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~------------ 174 (303)
.-|+.-+.+++++ .|+...+...-|.++..+|.+++|+.-|..++... +......
T Consensus 89 k~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 89 KAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred ccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHH
Confidence 9999999999986 57788889999999999999999999999988642 1111111
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~ 247 (303)
..+......+. ..|+...|+++..+.+++.+=... -+.+|-..+...+|+ +....-..+....++.++.++.
T Consensus 156 ~~l~~ql~s~~-~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 156 WVLVQQLKSAS-GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHHh-cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 12233344443 679999999999999998872111 122222223333443 2222233345566889999999
Q ss_pred hhhcHHHHHH-HHHHH
Q psy4339 248 CLENFEKMTE-FTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~-~~~~~ 262 (303)
..|+.+.++. ..+-+
T Consensus 235 ~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECL 250 (504)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999998888 55554
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-08 Score=79.26 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENN-------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 170 (303)
+.|+..|+|..|..-|++|+..+....+.+. .....++.|+|.|+.++++|.+|+.++.++|.+.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------- 287 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-------- 287 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--------
Confidence 7789999999999999999998763322221 1234678999999999999999999999999864
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
|....+++..|.++. .+|+|+.|+..|++++++.| ..-.+...|..+..+..
T Consensus 288 ~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P---------------------------~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 288 PNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEP---------------------------SNKAARAELIKLKQKIR 339 (397)
T ss_pred CCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCC---------------------------CcHHHHHHHHHHHHHHH
Confidence 566789999999998 99999999999999999988 33455666777766666
Q ss_pred cHHHHHH
Q psy4339 251 NFEKMTE 257 (303)
Q Consensus 251 ~~~~A~~ 257 (303)
++.+..+
T Consensus 340 ~~~~kek 346 (397)
T KOG0543|consen 340 EYEEKEK 346 (397)
T ss_pred HHHHHHH
Confidence 6665544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=65.26 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHH
Q psy4339 144 SMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR 223 (303)
Q Consensus 144 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~ 223 (303)
.+|+|++|+.+++++++.. +..+ ....+..+|.+|. ..|++++|+.++++ ....+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~----------------- 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDP----------------- 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHH-----------------
T ss_pred CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCC-----------------
Confidence 3689999999999999876 2223 4556778999995 99999999999999 54444
Q ss_pred HHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 224 DLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 224 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
....+.+.+|.++..+|++++|++.++.
T Consensus 56 ----------~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 ----------SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp ----------CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3455677889999999999999996543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-07 Score=71.40 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...++..| ......|+|.+|+..|++.+..+ +.++....+...+|.++...|++++|+..+++-+
T Consensus 5 ~~~lY~~a----------~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 5 AEALYQKA----------LEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHH----------HHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667 66689999999999999999875 4567778899999999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHML-----------EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~ 228 (303)
+.. |++|....+++.+|.++. .+. ...+|+..++..+...|+.+....+...+..+..
T Consensus 70 ~~y-----P~~~~~~~A~Y~~g~~~~-~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~----- 138 (203)
T PF13525_consen 70 KLY-----PNSPKADYALYMLGLSYY-KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN----- 138 (203)
T ss_dssp HH------TT-TTHHHHHHHHHHHHH-HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-----
T ss_pred HHC-----CCCcchhhHHHHHHHHHH-HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH-----
Confidence 876 777888889999999874 543 3458899999999888865544444333322221
Q ss_pred ccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 229 SASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
..+.--..+|..|.+.|.+..|...+
T Consensus 139 -----~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 139 -----RLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp -----HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23333566899999999999999844
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-07 Score=86.01 Aligned_cols=198 Identities=11% Similarity=-0.125 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALI 89 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 89 (303)
....-+.++++.++.+..+..+--..+....|..| ...++.++|+..|.+++.-.... ...+........|-
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday----l~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~-- 374 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY----IDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLY-- 374 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH----HhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHH--
Confidence 33444666777777665333222223566666555 57888888888888775431100 00111111112222
Q ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH-h--h----CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 90 LEEIALDSNELISVQFYKEAELLHQNALVLSLK-H--F----GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~--~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..|...++|++|..++.+..+...- . . ...+|+.......++.++...|++.+|++.+++.+...
T Consensus 375 --------yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 375 --------YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred --------HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7778999999999999998873220 0 1 12456777888999999999999999999999987654
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhH
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGL 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~l 242 (303)
|........+|.++. ..|.+.+|...++.+..+.| ....+...+
T Consensus 447 --------P~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P---------------------------~~~~~~~~~ 490 (822)
T PRK14574 447 --------PANQNLRIALASIYL-ARDLPRKAEQELKAVESLAP---------------------------RSLILERAQ 490 (822)
T ss_pred --------CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCC---------------------------ccHHHHHHH
Confidence 666677889999998 99999999999988887766 455667788
Q ss_pred HHHHHhhhcHHHHHHHH
Q psy4339 243 IHVYECLENFEKMTEFT 259 (303)
Q Consensus 243 a~~~~~~g~~~~A~~~~ 259 (303)
|.++..+|++++|....
T Consensus 491 ~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 491 AETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 88888888888887744
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-08 Score=78.29 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=85.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|+|++|+..|++.+..+ |+++....+++.+|.+|...|++++|+..|++++..+ ++++....++..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl 223 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV 223 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence 55799999999999999864 4555667789999999999999999999999999876 6778899999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.++. .+|++++|...|+++++..|
T Consensus 224 g~~~~-~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQ-DKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 99997 99999999999999998888
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=66.66 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=76.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++.. +++ ..++..+|.++...+++++|+.++++++... |....++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~ 71 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-----PDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELD--------PDNAKAY 71 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CcchhHH
Confidence 66688999999999999998852 222 3678899999999999999999999998753 2233678
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.++. ..|++++|..++.+++...|
T Consensus 72 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYY-KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHccCC
Confidence 89999997 99999999999999987654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-07 Score=66.57 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
+.+++|.++-.+|+.++|+.+|++++.. |.+.+....++..+|..+. .+|++++|+..+++++.-.|
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p------- 69 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFP------- 69 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC-------
Confidence 5678999999999999999999999874 4555667788999999998 99999999999999987666
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+.+........++.++...|++++|++ +...+
T Consensus 70 -----------------~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 70 -----------------DDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred -----------------CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222244445668889999999999999 55555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-07 Score=84.33 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=146.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++....+|.+-.=.+.. .+.-+|....++..|...+ ...+++++|+..+..+++. +|.....++.+|
T Consensus 6 ~~~~~~~~~ee~~~r~~-~~~~~p~n~~a~~~Li~~~----~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G 72 (906)
T PRK14720 6 IDKLTSLLNEEKWTRAD-ANNYSLSKFKELDDLIDAY----KSENLTDEAKDICEEHLKE--------HKKSISALYISG 72 (906)
T ss_pred HHHHHHHhhhhhhhhcc-cccCCcchHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHh--------CCcceehHHHHH
Confidence 34444444443322222 2345677888999999766 5899999999999988776 667778888888
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh-----------CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF-----------GENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
.++...+++.+|.-. .++.+..... -.+.+..-.++..+|.||-.+|++++|...|+
T Consensus 73 ----------~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 73 ----------ILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred ----------HHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 444677777776665 5554432210 01123334588899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------hhhHHHH
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL-----------EYHYRDL 225 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----------~~~~~a~ 225 (303)
+++++. |..+.+++++|..|. .. +.++|+.++.+|+...-+..++....... ..+.+-+
T Consensus 141 r~L~~D--------~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 141 RLVKAD--------RDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred HHHhcC--------cccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 999864 667788999999998 88 99999999999998766433322222211 1111111
Q ss_pred hh-hcc-ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 226 KL-FSA-SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 226 ~~-~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+. .+. ........+.-+=..|...+++++++.+++.+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 11 111 11134455666677888888888888865544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-07 Score=71.89 Aligned_cols=175 Identities=10% Similarity=-0.049 Sum_probs=123.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+-++.|+..|++.++. -+..+....+...+|.++| ..++|++|+..+++.++.. +++|....+++.
T Consensus 46 g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy----~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~ 111 (243)
T PRK10866 46 GNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYY----KNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYM 111 (243)
T ss_pred CCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHH
Confidence 3444555555555443 3456777788899999885 9999999999999998873 667888889999
Q ss_pred HHHHHHHHhhhh--------HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHHHHhhcH
Q psy4339 86 KALILEEIALDS--------NELISVQFYKEAELLHQNALVLSLKHFGEN---------NVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 86 la~~~~~~~~~~--------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~ 148 (303)
+|.+...++.+. .....+....+|+..+++.++.+.+..-.. ....+.--..+|..|.+.|.|
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 996542222100 111233445677788888877653210000 011223334688899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 149 DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 149 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
.-|+.-++.+++-+ ++.+....++..++.+|. .+|..++|......
T Consensus 192 ~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~-~lg~~~~a~~~~~~ 237 (243)
T PRK10866 192 VAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR-QLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH-HcCChHHHHHHHHH
Confidence 99999999998876 667888899999999997 99999999887643
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.2e-06 Score=62.98 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=111.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
++.-..+..+..-+. .| +...+|++|..++.+|.+-.+.. ......+..+-..| ........+.
T Consensus 25 ad~dgaas~yekAAv-af---RnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaa----------mLake~~kls 88 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAV-AF---RNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAA----------MLAKELSKLS 88 (308)
T ss_pred CCchhhHHHHHHHHH-HH---HhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH----------HHHHHHHHhH
Confidence 444445556666664 44 79999999999999999887653 22222455565556 3347888999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
++..++++|..++.+.. .|+.+..-..-|--....-++++|+.+|++++.+.+.- .........+...++++. +
T Consensus 89 Evvdl~eKAs~lY~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lV-r 162 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLV-R 162 (308)
T ss_pred HHHHHHHHHHHHHHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhh-h
Confidence 99999999999998753 34444333344444566788999999999999998762 222233455678899998 9
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
..++++|-..+.+-..+..
T Consensus 163 l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred hHHhhHHHHHHHHhhhHHH
Confidence 9999999988887666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=62.23 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.+|..+...|++++|+..|+++++. .|....++..+|.++. .+|++++|+..|+++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 5799999999999999999999853 4888899999999997 9999999999999999998843
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-08 Score=85.34 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=93.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
.+.++|.++.+.++.++++ +|....+++.+|.+..+.++++.|.++|..++.+. |+...+++|+
T Consensus 496 ~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNl 559 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNL 559 (777)
T ss_pred ccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhh
Confidence 5678888888888888886 45566778888888888899988888888887653 6777888889
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+.+|. ..|+-.+|...+++|++-.. .+ ..++-|.-.+..+.|.+++|++.++
T Consensus 560 s~ayi-~~~~k~ra~~~l~EAlKcn~------------------------~~---w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 560 STAYI-RLKKKKRAFRKLKEALKCNY------------------------QH---WQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHH-HHhhhHHHHHHHHHHhhcCC------------------------CC---CeeeechhhhhhhcccHHHHHHHHH
Confidence 88888 88888888888888886544 22 2346777778889999999999555
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 612 rl 613 (777)
T KOG1128|consen 612 RL 613 (777)
T ss_pred HH
Confidence 54
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=62.17 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAERMQLKA 158 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a 158 (303)
+.++..+| ..+...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..++++
T Consensus 3 a~~~~~~g----------~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLG----------QIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHH----------HHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46677788 7779999999999999999997 4556778999999999999 899999999999
Q ss_pred HHH
Q psy4339 159 IAI 161 (303)
Q Consensus 159 l~~ 161 (303)
+++
T Consensus 65 l~l 67 (69)
T PF13414_consen 65 LKL 67 (69)
T ss_dssp HHH
T ss_pred HHc
Confidence 986
|
... |
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=75.69 Aligned_cols=193 Identities=13% Similarity=0.010 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
=|++|++...++++.. |+...+...--.++ ...++|++|+...+.-... ..........|
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvVal----Iq~~ky~~ALk~ikk~~~~---------~~~~~~~fEKA------ 86 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVAL----IQLDKYEDALKLIKKNGAL---------LVINSFFFEKA------ 86 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhh----hhhhHHHHHHHHHHhcchh---------hhcchhhHHHH------
Confidence 3677888877777543 44444444444355 5889999888555432211 00001113344
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-----------
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK----------- 162 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------- 162 (303)
.+.++.+..++|+..+. .++ +.+ ..+...-|.+++++|+|++|+..|+..++-.
T Consensus 87 ----Yc~Yrlnk~Dealk~~~-~~~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 87 ----YCEYRLNKLDEALKTLK-GLD-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred ----HHHHHcccHHHHHHHHh-ccc-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 66688999999998887 111 122 3345667899999999999999998763321
Q ss_pred ------------HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc
Q psy4339 163 ------------EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA 230 (303)
Q Consensus 163 ------------~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~ 230 (303)
.+.........-..++|.|.++. ..|+|.+|++.+++++.+.. +.+..
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gky~qA~elL~kA~~~~~-------------------e~l~~ 211 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGKYNQAIELLEKALRICR-------------------EKLED 211 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH-------------------Hhhcc
Confidence 01111122234567899999998 99999999999999998887 44433
Q ss_pred ccc-------cHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 231 SYS-------GLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 231 ~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++. +...+...|+.++..+|+.++|...+..
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 221 2556788899999999999999994433
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-07 Score=73.89 Aligned_cols=202 Identities=11% Similarity=0.007 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH----------------HHh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE----------------EIA 94 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------------~~~ 94 (303)
|.....+..+|.++| ..|++++|+..|+++.-+ +|......-..|.++. .+.
T Consensus 229 r~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred CccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 445667888998885 899999999999988755 2332222222222211 000
Q ss_pred h--------hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 95 L--------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 95 ~--------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
. .....+..+++..|+.+.+++++. ++....++..-|..+..+|+.++|.-.|+.|..+.
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---- 364 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---- 364 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc----
Confidence 0 003446778888999999988885 34455678889999999999999999999998875
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhh------hhhhhHHHHhhhc---cccccHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS------GLEYHYRDLKLFS---ASYSGLEY 237 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~l~~~~~a~~~~~---~~~~~~~~ 237 (303)
|....+|..|-.+|. ..|++.||....+.++...++......... .-..-.+|.+... .-.|....
T Consensus 365 ----p~rL~~Y~GL~hsYL-A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 ----PYRLEIYRGLFHSYL-AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred ----hhhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 777889999999998 999999999999999998885433222111 1122234443322 23677888
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+-..+|.+....|+++.++.+++.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHH
Confidence 888999999999999999995544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-08 Score=64.86 Aligned_cols=93 Identities=25% Similarity=0.306 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
++.++|.++...|++++|+..++++++.. |....++..+|.++. ..|++++|+.++++++...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~------- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDP------- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCC-------
Confidence 46789999999999999999999998763 223367889999997 99999999999999998777
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+|.++...|++++|..++..+
T Consensus 66 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 66 --------------------DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred --------------------cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22256889999999999999999965443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-07 Score=84.39 Aligned_cols=85 Identities=8% Similarity=0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hhhhhhhhhhhhHHH---HhhhccccccHHHHHHhHHHHHHhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LFSASYSGLEYHYRD---LKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~l~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.+..+..+|. +.|++++|.+.+++.- ..|+.. .+..++...+.+..| .+......|.....|..++.+|...
T Consensus 464 ~y~~li~~l~-r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLG-REGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHH-hcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 4666777776 7888888887776531 111100 111111112222222 2222233444445688999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|++++|.+.++.+
T Consensus 542 G~~~~A~~v~~~m 554 (697)
T PLN03081 542 GRQAEAAKVVETL 554 (697)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999977666
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-06 Score=76.05 Aligned_cols=178 Identities=19% Similarity=0.105 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEE 92 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 92 (303)
+-|+.|+++.+...+ +.......+.-+.|.| +.+..++|+..++- ..+.++ .++..-|
T Consensus 60 ~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y----rlnk~Dealk~~~~--------~~~~~~---~ll~L~A----- 117 (652)
T KOG2376|consen 60 DKYEDALKLIKKNGA--LLVINSFFFEKAYCEY----RLNKLDEALKTLKG--------LDRLDD---KLLELRA----- 117 (652)
T ss_pred hHHHHHHHHHHhcch--hhhcchhhHHHHHHHH----HcccHHHHHHHHhc--------ccccch---HHHHHHH-----
Confidence 347778866555322 1112222267888886 89999999998871 112222 2333334
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHH-----------------------HhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSL-----------------------KHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
..++++|+|++|+..|+..++-.. +.....+...-..++|.|.++...|+|.
T Consensus 118 -----QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 118 -----QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred -----HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 555899999999999998643211 1111112234567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh-hhhhhhhhhhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDD-------YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND-NLKLFSASYSGL 218 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~l 218 (303)
+|++.+++|++++++.+..++ .+...+...++.++. .+|+..+|...|...++..+ +-|..+.+.|+|
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ-~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ-LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999998877643322 234566788999998 99999999999999988766 345666666666
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-07 Score=73.22 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
...+..|..++ ...|+|++|+..|++.++.+ ++++....+++.+| .+|...|++++|+..|+
T Consensus 143 ~~~Y~~A~~l~---~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG----------~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALV---QDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLG----------QLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHH----------HHHHHcCCHHHHHHHHH
Confidence 45566665553 46799999999999988873 34555678899999 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++..+ ++++....++..+|.++..+|++++|...|+++++.+
T Consensus 205 ~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 205 SVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999864 5678888999999999999999999999999998765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-07 Score=82.48 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
++|.++++.... ....+++.+...| ...|++++|+..|++..+. .-.|+ ..++..+.
T Consensus 276 ~~A~~vf~~m~~----~~~vt~n~li~~y----~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll-------- 332 (697)
T PLN03081 276 EDARCVFDGMPE----KTTVAWNSMLAGY----ALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMI-------- 332 (697)
T ss_pred HHHHHHHHhCCC----CChhHHHHHHHHH----HhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHH--------
Confidence 344555554322 2345777777666 6899999999999876543 11222 12344444
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+...|++++|.+.+...++. ..+....+++.|...|.+.|++++|.+.|++..+ ++ ..
T Consensus 333 --~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~ 392 (697)
T PLN03081 333 --RIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LI 392 (697)
T ss_pred --HHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-ee
Confidence 4456666666666666655542 1111223344555555555555555555544321 11 12
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
+|+.+...|. ..|+.++|++.|++..
T Consensus 393 t~n~lI~~y~-~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 393 SWNALIAGYG-NHGRGTKAVEMFERMI 418 (697)
T ss_pred eHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3444555554 5555555555555543
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=76.12 Aligned_cols=208 Identities=13% Similarity=0.036 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|.+.++..+.++. ..|+.++++...|-.+ ...|+-++|..+...++.. ++....++..+|
T Consensus 23 YkkgLK~~~~iL~-k~~eHgeslAmkGL~L----~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~g------- 82 (700)
T KOG1156|consen 23 YKKGLKLIKQILK-KFPEHGESLAMKGLTL----NCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLG------- 82 (700)
T ss_pred HHhHHHHHHHHHH-hCCccchhHHhccchh----hcccchHHHHHHHHHHhcc--------CcccchhHHHHH-------
Confidence 4456777777775 5677778888888777 5899999999999988774 444456777788
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
-+++...+|++|+.+|+.|+.+ .++...++..++....++++++-....-.+-++.. |...
T Consensus 83 ---l~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~r 143 (700)
T KOG1156|consen 83 ---LLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQR 143 (700)
T ss_pred ---HHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhH
Confidence 4448999999999999999996 34556788999999999999998888877777654 6666
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hh----hhhhhhh-----hhhHHHHhhhcccccc---HHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LF----SASYSGL-----EYHYRDLKLFSASYSG---LEYDY 239 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~----~~~~~~l-----~~~~~a~~~~~~~~~~---~~~~~ 239 (303)
..|...|..+. ..|++..|....+.-.+.....| .+ ...+.+. +...++++.+....+. .....
T Consensus 144 a~w~~~Avs~~-L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQH-LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence 77889999996 99999999999888776653212 11 1111111 2234555544444333 33445
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..-|.++.+.|++++|...+..+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHH
Confidence 67899999999999999966555
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-07 Score=66.82 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=85.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+-++..|+|++|..-|..|++++... ........|.|-|.+...++.++.|+.-+.+|+++. |....++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHH
Confidence 66688999999999999999987543 234556788999999999999999999999999985 6677888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.+|. .+.+|++|++-|++.++..|
T Consensus 172 ~RRAeaye-k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 172 ERRAEAYE-KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHhCc
Confidence 89999998 99999999999999998888
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=80.15 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC-----------cchhhhHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP-----------ENHLLLTSA 82 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~ 82 (303)
-+++++++++..+ ..+|.....+..+|.++ .+.+++.+|.-. .++.+...... .+.+..-.+
T Consensus 46 ~~deai~i~~~~l-~~~P~~i~~yy~~G~l~----~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A 118 (906)
T PRK14720 46 LTDEAKDICEEHL-KEHKKSISALYISGILS----LSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA 118 (906)
T ss_pred CHHHHHHHHHHHH-HhCCcceehHHHHHHHH----Hhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence 3466677666544 34688889999999755 588888888777 66665443210 011222245
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| .+|...|+.++|...+++++++ +|..+.+++++|..|... +.++|+.++.+|+...
T Consensus 119 l~~LA----------~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 119 LRTLA----------EAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHH----------HHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 66667 7779999999999999999996 366778899999999999 9999999999998764
Q ss_pred HHh-------------cCCCch-------------------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 163 EKV-------------LGKDDY-------------------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 163 ~~~-------------~~~~~~-------------------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-.. ...++. .....+.-+=..|. ..++|++++..++.+++..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~-~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK-ALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhcCC
Confidence 221 111100 01111222236676 77888999999999888877
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-05 Score=60.46 Aligned_cols=125 Identities=16% Similarity=0.035 Sum_probs=92.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|+.+-|..++++..+.+ +.++ .+...-| ..+...|++++|+++|...++ ++|
T Consensus 64 d~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lka----------m~lEa~~~~~~A~e~y~~lL~--------ddp 117 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKA----------MLLEATGNYKEAIEYYESLLE--------DDP 117 (289)
T ss_pred HhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHH----------HHHHHhhchhhHHHHHHHHhc--------cCc
Confidence 5788888888888755442 2333 3333445 444788999999999988776 345
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....++-.---+...+|+.-+|++.+.+-++.+ +....+|..++.+|. ..|+|++|.-|+++.+-+.|.+|
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcH
Confidence 555566666666777888889998888877765 444568899999997 99999999999999998888544
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=80.34 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+.++..||. +| +...+...|..+|++|.++ ++..+.+--.++ .+|.+..+++.|
T Consensus 488 d~~~apaf~~LG~-iY---rd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a----------dtyae~~~we~a 545 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQ-IY---RDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA----------DTYAEESTWEEA 545 (1238)
T ss_pred ccchhHHHHHHHH-HH---HHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH----------HHhhccccHHHH
Confidence 3556777778884 44 4555777788888887776 233333333344 666777788887
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
......+-+... -......+...|..|...+++..|+..|+.|+.+. |....++..+|.+|. ..|
T Consensus 546 ~~I~l~~~qka~------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~gLGeAY~-~sG 610 (1238)
T KOG1127|consen 546 FEICLRAAQKAP------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLGLGEAYP-ESG 610 (1238)
T ss_pred HHHHHHHhhhch------HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHHHHHHHH-hcC
Confidence 777333222110 01122344557888888888888888888887653 666778888999997 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++..|++.|.+|..+.| ....+.+..|.+....|+|.+|..
T Consensus 611 ry~~AlKvF~kAs~LrP---------------------------~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRP---------------------------LSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ceehHHHhhhhhHhcCc---------------------------HhHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999988887777 333445566666666666666666
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=72.69 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-------hHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-------LTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
.+.....-|+.+ ++.|+|..|...|++|+..+....+.+... ...++.|++ .++..+++
T Consensus 207 ~A~~~ke~Gn~~----fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA----------~c~lKl~~ 272 (397)
T KOG0543|consen 207 AADRKKERGNVL----FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA----------ACYLKLKE 272 (397)
T ss_pred HHHHHHHhhhHH----HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH----------HHHHhhhh
Confidence 455666778777 599999999999999999877443322211 345677788 67799999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
|.+|+..+.++|.+ .|....+++.-|.++..+|+|+.|+..|++++++. |..-.+...+..+-.
T Consensus 273 ~~~Ai~~c~kvLe~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 273 YKEAIESCNKVLEL--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH
Confidence 99999999999996 34556789999999999999999999999999875 444455556666655
Q ss_pred HhhcCHH-HHHHHHHHHHHhhh
Q psy4339 186 YHMLEYH-KAEKLYFRSIEIND 206 (303)
Q Consensus 186 ~~~g~~~-~A~~~~~~al~~~~ 206 (303)
+..++. ...+.|...+....
T Consensus 337 -k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 -KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -HHHHHHHHHHHHHHHHhhccc
Confidence 444443 34777777776544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=76.53 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=95.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|++.+.+. .+.+ +....- .++...++++.|.+.++..-++ .+|
T Consensus 113 ~~~~~~~~AL~~l~~~----------~~lE---~~al~V----------qi~L~~~R~dlA~k~l~~~~~~-----~eD- 163 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG----------GSLE---LLALAV----------QILLKMNRPDLAEKELKNMQQI-----DED- 163 (290)
T ss_dssp CCCCHHHHHHCCCTTT----------TCHH---HHHHHH----------HHHHHTT-HHHHHHHHHHHHCC-----SCC-
T ss_pred HHcCCHHHHHHHHHcc----------Cccc---HHHHHH----------HHHHHcCCHHHHHHHHHHHHhc-----CCc-
Confidence 5789999888877642 1222 222222 6668899999999888775442 122
Q ss_pred HHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..-+....|++....| ++.+|...|++..+ ..+.....++.+|.++. .+|+|++|...+++++...+
T Consensus 164 --~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 164 --SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp --HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-C
T ss_pred --HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcc
Confidence 1122223334444455 58999999988532 22344567889999998 99999999999999876554
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 207 NLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 207 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
....++.+++.+....|+..++.+ +...+
T Consensus 233 ---------------------------~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 233 ---------------------------NDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred ---------------------------CCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 445568899999999999955544 77655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.5e-06 Score=78.28 Aligned_cols=150 Identities=7% Similarity=-0.062 Sum_probs=100.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|...|+.++|++.|++..+. +-.|+ ..++..+-..+...|++++|..+|+...+.. +-.|. ...+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~------g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y 628 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVES------GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHY 628 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc------CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHH
Confidence 6678889999999988886652 11232 2346666677888999999999998876432 22343 3578
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh------hhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY------SGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
..+..++. +.|++++|.+.+++. .+.|+...+...+ .+++....+.+.+-+-.|.....+..++.+|...|+
T Consensus 629 ~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLG-RAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 89999998 999999999999874 2333211111111 122222233333333445556668899999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
+++|.+..+.+
T Consensus 707 ~~~a~~vr~~M 717 (857)
T PLN03077 707 WDEVARVRKTM 717 (857)
T ss_pred hHHHHHHHHHH
Confidence 99999987666
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-06 Score=69.47 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|.-|+.+.+-....+..+....-..+|.|+ +..|+|++|+..|.-+... .+.| +....++|
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~----fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vnLA------- 98 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCY----FHLGDYEEALNVYTFLMNK------DDAP--AELGVNLA------- 98 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHH----HhhccHHHHHHHHHHHhcc------CCCC--cccchhHH-------
Confidence 444555554333444445556777889888 5999999999999876552 1222 34556778
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHH----------HHHhhC--------CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVL----------SLKHFG--------ENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~----------~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
.++...|.|.+|.....+|-+. ..+... .+-.+...-...||.+.+..-.|++|++.|+
T Consensus 99 ---cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 99 ---CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred ---HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6668899999998877664321 111100 0001122334567888888888888888888
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhh--------------
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGL-------------- 218 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l-------------- 218 (303)
+++. ++|+....-.++|.+|. ++.-|+-+.+.+.--+...|+.+- .+--..++
T Consensus 176 rvL~--------dn~ey~alNVy~ALCyy-KlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 176 RVLQ--------DNPEYIALNVYMALCYY-KLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHh--------cChhhhhhHHHHHHHHH-hcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 8764 45777777788999994 998888888777766665553220 00000011
Q ss_pred ----------hhh-----------HHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 219 ----------EYH-----------YRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 219 ----------~~~-----------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+.+ .-|++.+..-....+++..+|...|..+|+..+|..+.+.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 000 0122333222223567788888888999999998875544
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-05 Score=60.57 Aligned_cols=174 Identities=20% Similarity=0.126 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH-HHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS-AHRVK 86 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l 86 (303)
++.|...+.+|.+-++.. ....+.+.++...|... .....+.++..+|++|..++.+. ..|+.+. ++-.-
T Consensus 47 feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLa----ke~~klsEvvdl~eKAs~lY~E~---GspdtAAmaleKA 117 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLA----KELSKLSEVVDLYEKASELYVEC---GSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHh---CCcchHHHHHHHH
Confidence 455666666676666542 23335667777777555 68899999999999999998875 3344332 33333
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| -....-+.++|+..|++++.+.++. .....-...+...+.++...++|++|-..+.+-..+..+.
T Consensus 118 a-----------k~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 118 A-----------KALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred H-----------HHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 3 2256778999999999999998752 2222344667889999999999999999998877666554
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.....+...-.+|. ...+|..|..+++...++-.
T Consensus 184 -~~y~~~~k~~va~ilv~L-~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 184 -DAYNSQCKAYVAAILVYL-YAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred -hhcccHHHHHHHHHHHHh-hHHHHHHHHHHhcchhcCcc
Confidence 222334444555556666 67899999999999876643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=57.99 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+...|++++|+..|+++++. +|....++..+|.++..+|++++|+.+|++++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6679999999999999999984 57788899999999999999999999999999864
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=60.81 Aligned_cols=138 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.|...++++.|=..|.++-+...+. .+..+.+.+|...+.||.+- ++++|+.+++++++|+... +.-...+.-+
T Consensus 42 n~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~ 116 (288)
T KOG1586|consen 42 NMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHH 116 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhh
Confidence 33355667777777888888877664 23345677888888887665 9999999999999998664 2223345567
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc-cccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS-YSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
..+|.+|.-.+.++++|+.+|+++-+... ++. ......++...|..-...++|.+|+
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk----------------------~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYK----------------------GEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHc----------------------chhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999997334899999999999988776 222 1123345666677777777788887
Q ss_pred HHHHHH
Q psy4339 257 EFTNKL 262 (303)
Q Consensus 257 ~~~~~~ 262 (303)
..++.+
T Consensus 175 ~iyeqv 180 (288)
T KOG1586|consen 175 DIYEQV 180 (288)
T ss_pred HHHHHH
Confidence 744433
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-06 Score=76.33 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=107.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++-++|..++.++-.+ .|..+..++..| ..+...|++++|.+.|..|+.+ +
T Consensus 661 ~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G----------~~~~~~~~~~EA~~af~~Al~l--------d 714 (799)
T KOG4162|consen 661 LLSGNDDEARSCLLEASKI--------DPLSASVYYLRG----------LLLEVKGQLEEAKEAFLVALAL--------D 714 (799)
T ss_pred HhcCCchHHHHHHHHHHhc--------chhhHHHHHHhh----------HHHHHHHhhHHHHHHHHHHHhc--------C
Confidence 5778888999899988776 467788899999 6668999999999999999996 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAER--MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|+...+...+|.++...|+..-|.. ++..++++. |....+|+.+|.++. .+|+.++|.++|.-|+++.+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~LG~v~k-~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYYLGEVFK-KLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HccchHHHHHHHHHHHhhcc
Confidence 4445567789999999999888888 999998864 556678999999998 99999999999999999888
Q ss_pred hhh
Q psy4339 207 NLK 209 (303)
Q Consensus 207 ~~~ 209 (303)
.+|
T Consensus 786 S~P 788 (799)
T KOG4162|consen 786 SNP 788 (799)
T ss_pred CCC
Confidence 444
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.2e-06 Score=63.34 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=92.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
...|++++|+++|...++- +|. .+.--..++. ...+|+--+|++-+.+-++.+
T Consensus 97 Ea~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAi-----------lka~GK~l~aIk~ln~YL~~F------- 150 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAI-----------LKAQGKNLEAIKELNEYLDKF------- 150 (289)
T ss_pred HHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHH-----------HHHcCCcHHHHHHHHHHHHHh-------
Confidence 6788999999988876543 233 2222233332 257888889999988888865
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML---EYHKAEKLYFRSIEI 204 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g---~~~~A~~~~~~al~~ 204 (303)
+....++..++.+|...|+|++|.-|+++.+-+. |.....+..+|.++ |-+| ++.-|.++|.+++++
T Consensus 151 -~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P~n~l~f~rlae~~-Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 -MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------PFNPLYFQRLAEVL-YTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHh
Confidence 3345689999999999999999999999988653 55556677888888 4666 577899999999999
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.+
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 88
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-07 Score=70.79 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=88.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.-+...|+|..|..-|..-++-+ ++++....+++.||.+++.+|++++|...|..+++-+ +++|....++
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdal 218 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDAL 218 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHH
Confidence 55588999999999999988854 5677788999999999999999999999999998765 6778888999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.+.. .+|+.++|...|+++++-.|
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHCC
Confidence 99999997 99999999999999999888
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=77.35 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=98.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|...|++-.=-.+|++|+++.... .+.+...+|......++|+++.++++.++++. |....+|
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~w 522 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTW 522 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHH
Confidence 45566677777777777888775432 23355667777777899999999999998874 6677889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++|.+.. ..+++..|..+|..++...| +...+++|++..|...|+..+|..
T Consensus 523 f~~G~~AL-qlek~q~av~aF~rcvtL~P---------------------------d~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 523 FGLGCAAL-QLEKEQAAVKAFHRCVTLEP---------------------------DNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HhccHHHH-HHhhhHHHHHHHHHHhhcCC---------------------------CchhhhhhhhHHHHHHhhhHHHHH
Confidence 99999998 99999999999999998877 677889999999999999999999
Q ss_pred -HHHHH
Q psy4339 258 -FTNKL 262 (303)
Q Consensus 258 -~~~~~ 262 (303)
+.+++
T Consensus 575 ~l~EAl 580 (777)
T KOG1128|consen 575 KLKEAL 580 (777)
T ss_pred HHHHHh
Confidence 44444
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-06 Score=73.45 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=99.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|...++..+..++.. ++|+ .++...| -.+...|+-++|..+.+.++.. ++
T Consensus 19 E~kQYkkgLK~~~~iL~k~-----~eHg---eslAmkG----------L~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF-----PEHG---ESLAMKG----------LTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC-----Cccc---hhHHhcc----------chhhcccchHHHHHHHHHHhcc--------Cc
Confidence 7899999999988877731 3343 5555667 4447889999999999998883 44
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....+|.-+|.++...++|++|+++|+.|+.+. |+...++..++.+.. .+++++-....-.+-++..+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhh
Confidence 556688999999999999999999999999864 556778999999998 99999998888888887777
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-06 Score=75.07 Aligned_cols=131 Identities=16% Similarity=0.059 Sum_probs=94.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHH--hhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELI--SVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
..+++..|+.+|++|+++ +|+.+.++..++.++.... .+. ..++...+.+..++++.+ +.
T Consensus 354 ~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~----~~~~~~~~~l~~a~~~~~~a~al------~~ 415 (517)
T PRK10153 354 DAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRH----SQQPLDEKQLAALSTELDNIVAL------PE 415 (517)
T ss_pred CHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHhhhc------cc
Confidence 345588999999999998 6777777777775542110 000 012344455555554443 11
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.+....++.-+|......|++++|...+++|+++. |. ..++..+|.++. ..|++++|++.|++|+.+.|.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC
Confidence 22334677788999999999999999999999874 43 568999999998 999999999999999999983
Q ss_pred h
Q psy4339 208 L 208 (303)
Q Consensus 208 ~ 208 (303)
+
T Consensus 486 ~ 486 (517)
T PRK10153 486 E 486 (517)
T ss_pred C
Confidence 3
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-05 Score=60.72 Aligned_cols=156 Identities=15% Similarity=0.043 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
.+.++.+..-|+.| ....+|..|=..|.++-+...+.. ...+.+.+|...+ .+| +.++..+|+
T Consensus 31 eeAadl~~~Aan~y----klaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~----------~cy-kk~~~~eAv 93 (288)
T KOG1586|consen 31 EEAAELYERAANMY----KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAA----------NCY-KKVDPEEAV 93 (288)
T ss_pred HHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHH----------HHh-hccChHHHH
Confidence 34566777777655 678888889888988888876652 3334566666666 444 455999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAIAIKEKVLGKDD-YEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 188 (303)
.+++++++++... +....-+..+..+|.+|..- .++++|+.+|++|-+.+.. ... ...-.++...|..-. ..
T Consensus 94 ~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa-~l 167 (288)
T KOG1586|consen 94 NCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAA-QL 167 (288)
T ss_pred HHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHH-HH
Confidence 9999999998765 22333455677899999775 9999999999999887743 111 122234555666665 78
Q ss_pred cCHHHHHHHHHHHHHhhhhhh
Q psy4339 189 LEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~ 209 (303)
|+|.+|+..|++......+++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 999999999999877665444
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-06 Score=65.99 Aligned_cols=177 Identities=13% Similarity=0.034 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
-|..++++.... ++.+|.....+..||.||| ...+|..|-++|++.-.. .|....-...-+
T Consensus 25 ry~DaI~~l~s~-~Er~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A------ 85 (459)
T KOG4340|consen 25 RYADAIQLLGSE-LERSPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL--------HPELEQYRLYQA------ 85 (459)
T ss_pred hHHHHHHHHHHH-HhcCccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH------
Confidence 456666665543 3556767778889998886 778899999999885444 455444333334
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
...+..+.+.+|+.......+ ++.....+...-+-+....+++..+..+.+ +..| ...
T Consensus 86 ----QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-------Qlp~---en~ 143 (459)
T KOG4340|consen 86 ----QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVE-------QLPS---ENE 143 (459)
T ss_pred ----HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHH-------hccC---CCc
Confidence 444566677776665443222 112222333334444455555554443332 2222 123
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHH
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFE 253 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (303)
+....+.|.+. |+.|++++|..-|+.|++... ..|. .-+++|.++...|+++
T Consensus 144 Ad~~in~gCll-ykegqyEaAvqkFqaAlqvsG------------------------yqpl---lAYniALaHy~~~qya 195 (459)
T KOG4340|consen 144 ADGQINLGCLL-YKEGQYEAAVQKFQAALQVSG------------------------YQPL---LAYNLALAHYSSRQYA 195 (459)
T ss_pred cchhccchhee-eccccHHHHHHHHHHHHhhcC------------------------CCch---hHHHHHHHHHhhhhHH
Confidence 45667788877 488888888888888876554 2222 3567888888888888
Q ss_pred HHHHHH
Q psy4339 254 KMTEFT 259 (303)
Q Consensus 254 ~A~~~~ 259 (303)
.|+++.
T Consensus 196 sALk~i 201 (459)
T KOG4340|consen 196 SALKHI 201 (459)
T ss_pred HHHHHH
Confidence 888754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=72.20 Aligned_cols=93 Identities=18% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..++..|++++|+..++..+. +.|.........+.++...|+.++|.+.+++++... |......
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~~~l~ 377 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------PNSPLLQ 377 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCccHHH
Confidence 455778888888888887554 244455566788999999999999999999999864 4446678
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.++|.++. ..|++.+|+..++..+.-.++
T Consensus 378 ~~~a~all-~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 378 LNLAQALL-KGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHH-hcCChHHHHHHHHHHhhcCCC
Confidence 89999998 999999999999998876663
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-05 Score=68.58 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
...+++.+|..|. ..|++++|+++.++|+...| ..+..+..-|.++...|++
T Consensus 193 ~lw~~~~lAqhyd-~~g~~~~Al~~Id~aI~htP---------------------------t~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 193 LLWTLYFLAQHYD-YLGDYEKALEYIDKAIEHTP---------------------------TLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCC---------------------------CcHHHHHHHHHHHHHCCCH
Confidence 3567899999998 89999999999999999888 3344455556666666666
Q ss_pred HHHHHHH
Q psy4339 253 EKMTEFT 259 (303)
Q Consensus 253 ~~A~~~~ 259 (303)
.+|.++.
T Consensus 245 ~~Aa~~~ 251 (517)
T PF12569_consen 245 KEAAEAM 251 (517)
T ss_pred HHHHHHH
Confidence 6655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-05 Score=54.41 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=82.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+.+.|++.|.+++.+. |..+.+|+|-+..+.-+|+.++|++-+.+|+++. |+.......++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~ 118 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAF 118 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHH
Confidence 34478899999999999999974 4567889999999999999999999999999985 44445566788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.+|+ .+|+-+.|..-|+.+-++..
T Consensus 119 vQRg~lyR-l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYR-LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHH-HhCchHHHHHhHHHHHHhCC
Confidence 99999999 99999999999999877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.2e-07 Score=75.71 Aligned_cols=72 Identities=18% Similarity=0.048 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..|.....++|+|..|..+|+|++|+..|++|+++. ++++....+++|+|.+|. .+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 356788899999999999999999999999999985 444444467999999998 999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=76.35 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
.+|+.+...|...|+.++|+++|++..+. +-.|+. .++..+-..+. +.|++++|..+|+...
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~-~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFISLLCACS-RSGMVTQGLEYFHSME 616 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHh-hcChHHHHHHHHHHHH
Confidence 35566666666666666666666665432 111222 22334444554 5666666666666655
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-05 Score=68.14 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=69.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
....+++.|...|.++.... .....+..-+.+...+++.++|+.+++++++.+ |.....+..+
T Consensus 629 ~en~e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lml 691 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLML 691 (913)
T ss_pred hccccHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHH
Confidence 34445555555555544420 112334444555555666666666666666554 4444555666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
|.++. .+++.+.|.+.|...++..| .....+..|+.+-.+.|....|...+.
T Consensus 692 GQi~e-~~~~ie~aR~aY~~G~k~cP---------------------------~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 692 GQIEE-QMENIEMAREAYLQGTKKCP---------------------------NSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHH-HHHHHHHHHHHHHhccccCC---------------------------CCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 66665 66666666666666655555 445557788888888998888888554
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
..
T Consensus 744 ra 745 (913)
T KOG0495|consen 744 RA 745 (913)
T ss_pred HH
Confidence 43
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=68.21 Aligned_cols=137 Identities=18% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....+.+..+..+| ..|++++|+..++..+.. .|+........+ .++...++..+|.
T Consensus 303 ~~~~aa~YG~A~~~~----~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~----------~i~~~~nk~~~A~ 360 (484)
T COG4783 303 RGGLAAQYGRALQTY----LAGQYDEALKLLQPLIAA--------QPDNPYYLELAG----------DILLEANKAKEAI 360 (484)
T ss_pred ccchHHHHHHHHHHH----HhcccchHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCChHHHH
Confidence 344556777776664 889999999999885443 344445555556 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+.+++++... |.......++|..+...|++.+|+..++..+. +.|+....|..||.+|. .+|+
T Consensus 361 e~~~kal~l~--------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~-~~g~ 423 (484)
T COG4783 361 ERLKKALALD--------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYA-ELGN 423 (484)
T ss_pred HHHHHHHhcC--------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHH-HhCc
Confidence 9999999962 33345567999999999999999999988764 33666778999999998 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
..+|...+-+......
T Consensus 424 ~~~a~~A~AE~~~~~G 439 (484)
T COG4783 424 RAEALLARAEGYALAG 439 (484)
T ss_pred hHHHHHHHHHHHHhCC
Confidence 9888877766665443
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-05 Score=69.00 Aligned_cols=122 Identities=17% Similarity=-0.002 Sum_probs=87.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..-..+++.++|++.++++++. .|.....+..+|.++.++++.+.|...|...++.+ |...-.+
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLW 722 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLW 722 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHH
Confidence 3346677778888888777775 34556678888888888888888888888777654 4444566
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..++.+-. ..|..-.|...++++.--.| .....+...-.+-...|+.+.|..
T Consensus 723 llLakleE-k~~~~~rAR~ildrarlkNP---------------------------k~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 723 LLLAKLEE-KDGQLVRARSILDRARLKNP---------------------------KNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHH-HhcchhhHHHHHHHHHhcCC---------------------------CcchhHHHHHHHHHHcCCHHHHHH
Confidence 77888876 88888888888888765544 334446666666677888888888
Q ss_pred -HHHHHH
Q psy4339 258 -FTNKLS 263 (303)
Q Consensus 258 -~~~~~~ 263 (303)
.-+++.
T Consensus 775 lmakALQ 781 (913)
T KOG0495|consen 775 LMAKALQ 781 (913)
T ss_pred HHHHHHH
Confidence 445553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-06 Score=61.46 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+++..+..+..|.-+| .+|++++|...|+-..-. +|........|| .++..+++|++|
T Consensus 33 s~~~le~iY~~Ay~~y----~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLa----------a~~Q~~k~y~~A 90 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY----NQGRLDEAETFFRFLCIY--------DFYNPDYTMGLA----------AVCQLKKQFQKA 90 (165)
T ss_pred CHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHH----------HHHHHHHHHHHH
Confidence 4567888888998775 999999999999865443 233334456677 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+..|-.|..+.. ++|. ..+..|.||..+|+.++|..+|+.++.
T Consensus 91 i~~Y~~A~~l~~-----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 91 CDLYAVAFTLLK-----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHccc-----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999988642 3333 356899999999999999999999987
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-06 Score=57.25 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
.+-.-|.....-|+.+.|++.|.+++.+. |..+.+|+|.+..++ -+|+.++|.+-+++++++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag------- 108 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALR-LQGDDEEALDDLNKALELAG------- 108 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcC-------
Confidence 34456777888899999999999999987 777889999999999 99999999999999998876
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHHhhhhcC
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILRETNELN 275 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~ 275 (303)
........++...|.+|..+|+-+.|.. +..+...-.....+++-.
T Consensus 109 ----------------~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~ 155 (175)
T KOG4555|consen 109 ----------------DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVE 155 (175)
T ss_pred ----------------ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHh
Confidence 2233566788999999999999999999 666654443333344433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-06 Score=74.16 Aligned_cols=126 Identities=16% Similarity=0.079 Sum_probs=86.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhc----ccHHHHHHHHHHHHHHHHhhCCcchhhh
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSS----GRFTESRRHAEKAIQTFKNLLPENHLLL 79 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (303)
+...+..|..+|++|+++ +|+.+.++..++.++.+.+... ++...+.....+++.+ +..+..
T Consensus 354 ~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~ 419 (517)
T PRK10153 354 DAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVL 419 (517)
T ss_pred CHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCC
Confidence 344567788888888877 6778888888886664211111 1222333333333322 112333
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| ......|++++|...+++|+++. |. ..+|..+|.++...|++++|++.+++|+
T Consensus 420 ~~~~~ala----------~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILA----------VQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666 44467899999999999999962 32 5689999999999999999999999999
Q ss_pred HHH
Q psy4339 160 AIK 162 (303)
Q Consensus 160 ~~~ 162 (303)
.+.
T Consensus 481 ~L~ 483 (517)
T PRK10153 481 NLR 483 (517)
T ss_pred hcC
Confidence 874
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=72.15 Aligned_cols=173 Identities=14% Similarity=0.005 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+.+...++..+ ....+++.|......+-+....- .....+-..| -.|...+++..|
T Consensus 522 Datdaeaaaa~adty----ae~~~we~a~~I~l~~~qka~a~------~~k~nW~~rG----------~yyLea~n~h~a 581 (1238)
T KOG1127|consen 522 DATDAEAAAASADTY----AEESTWEEAFEICLRAAQKAPAF------ACKENWVQRG----------PYYLEAHNLHGA 581 (1238)
T ss_pred CchhhhhHHHHHHHh----hccccHHHHHHHHHHHhhhchHH------HHHhhhhhcc----------ccccCccchhhH
Confidence 566777888888766 68899999988844333221110 0111122255 566899999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+..|+.++++ +|...+++..+|..|...|++.-|++.|.+|..+. |....+.+..|.+.. ..|
T Consensus 582 V~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~ec-d~G 644 (1238)
T KOG1127|consen 582 VCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVMEC-DNG 644 (1238)
T ss_pred HHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHHH-Hhh
Confidence 9999999995 56778899999999999999999999999998764 666777888899998 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|.+|...+...+.... .......+.+.++...+..+..+|=..+|..+.
T Consensus 645 kYkeald~l~~ii~~~s--------------------~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFS--------------------LERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred hHHHHHHHHHHHHHHHH--------------------HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999887665 111222246666777777777777777777643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-07 Score=50.86 Aligned_cols=41 Identities=27% Similarity=0.530 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56789999999999999999999999999999999999884
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=61.72 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
++.....+..| .-+..+|++++|...|+-.... ++.....+..||.|+..+++|++|+..|.
T Consensus 34 ~~~le~iY~~A----------y~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 34 QDMMDGLYAHA----------YEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666 6668999999999999875553 23334567899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.|..+. .++| ...+..|.+|. .+|+.+.|..+|..++..
T Consensus 96 ~A~~l~-----~~dp---~p~f~agqC~l-~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 96 VAFTLL-----KNDY---RPVFFTGQCQL-LMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHcc-----cCCC---CccchHHHHHH-HhCCHHHHHHHHHHHHhC
Confidence 988765 2333 23678999998 999999999999998873
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-06 Score=64.47 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
.++.|.-+| ..|+|.+|...|..-++.+ ++++....+++.|| .+++.+|+|+.|...|..+
T Consensus 144 ~Y~~A~~~~----ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLG----------e~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLY----KSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLG----------ESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHH----------HHHHhcccchHHHHHHHHH
Confidence 677776674 8999999999999877763 56777899999999 7779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+-+ +++|....++..||.+...+|+.++|...|+++++-+
T Consensus 205 ~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 205 VKDY-----PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 9854 5677788899999999999999999999999998765
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=56.82 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=99.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|++.......+ +. .+++. .++.+..+++-|....++..++-++
T Consensus 119 ~~~~~~deAl~~~~~~~~l----------E~-~Al~V------------qI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGENL----------EA-AALNV------------QILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred hcCCChHHHHHHHhccchH----------HH-HHHHH------------HHHHHHHHHHHHHHHHHHHHccchH------
Confidence 6899999999888763222 11 11111 4457788899999888888876322
Q ss_pred HHHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 129 VQTAKHYGNIGRLYQSM----QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.++..||..+... +++.+|.-+|++.-+ + .+.+...++..+.++. .+|+|++|...++.++.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k-~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K-TPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDK 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c-cCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhc
Confidence 2344555555442 456667766665432 2 2445667889999998 999999999999999976
Q ss_pred hhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 205 NDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.. ..+..+.|+-.+-...|.-.++.+ +...+
T Consensus 237 d~---------------------------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 237 DA---------------------------KDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred cC---------------------------CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 55 334557788888888899888887 66555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=67.69 Aligned_cols=132 Identities=11% Similarity=-0.049 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
...+.|+.+|.+|+.. .+.+|..+.++..+|+++......... .......+|.+..++|+++ ++..
T Consensus 272 ~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~-~~~~~~~~a~~~A~rAvel--------d~~D 337 (458)
T PRK11906 272 ESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKS-ELELAAQKALELLDYVSDI--------TTVD 337 (458)
T ss_pred HHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhc--------CCCC
Confidence 3456788888888733 133788889999999776432211100 1244566778888888885 3455
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.++..+|.+....++++.|...|++|+.+. |+.+.+++..|.+.. ..|+.++|.+.+++++.+.|
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCc
Confidence 6788899999999999999999999999874 788899999999996 89999999999999999988
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=55.33 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
...|++++|+..|++++... |....+...+|.+|. ..|++++|...+++++...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999864 556677889999997 999999999999999988773
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-05 Score=67.59 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=92.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++++.|+..+++..+. +|. +...++ .++...++-.+|++.+.+++.. .
T Consensus 180 ~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA----------~v~l~~~~E~~AI~ll~~aL~~--------~ 230 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRER--------DPE---VAVLLA----------RVYLLMNEEVEAIRLLNEALKE--------N 230 (395)
T ss_pred hhcccHHHHHHHHHHHHhc--------CCc---HHHHHH----------HHHHhcCcHHHHHHHHHHHHHh--------C
Confidence 5678999999988875443 344 233456 5557778889999999999953 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
|.....+...|.++...++++.|+++.++++.+. |....+|..||.+|. ..|++++|+..++.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi-~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYI-QLGDFENALLALNS 293 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH-hcCCHHHHHHHHhc
Confidence 4447778889999999999999999999999875 777889999999999 99999999977764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=67.11 Aligned_cols=154 Identities=10% Similarity=-0.077 Sum_probs=108.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhh-----hcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEY-----SSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
...+.|..+|.+|+.. .+-+|..+.++..+++|+.+... ...+..+|..+.++|+++ ++.-+
T Consensus 272 ~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da 338 (458)
T PRK11906 272 ESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDG 338 (458)
T ss_pred HHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCH
Confidence 3455566666666632 23478889999999988863211 123345666677777666 34445
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++..+| .+....++++.|...|++|+.+ +|..+.++...|.+....|+.++|.+.+++|++
T Consensus 339 ~a~~~~g----------~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 339 KILAIMG----------LITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHH----------HHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777888 4447788899999999999996 577788999999999999999999999999998
Q ss_pred HHHHhcCCCchHH-HHHHHHHHH-HHHHhhcCHHHHHHHHHH
Q psy4339 161 IKEKVLGKDDYEV-GLSVGHLAS-LYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~la~-~~~~~~g~~~~A~~~~~~ 200 (303)
+. |.. ......+-. .| --...++|+.+|-+
T Consensus 401 Ls--------P~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 432 (458)
T PRK11906 401 LE--------PRRRKAVVIKECVDMY--VPNPLKNNIKLYYK 432 (458)
T ss_pred cC--------chhhHHHHHHHHHHHH--cCCchhhhHHHHhh
Confidence 74 332 222333333 55 35668888888755
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-05 Score=56.96 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+|++|++.++.....+ +..+....+...+|.+|...+++++|+..+++-+++. +.||.+..++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~ 87 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAY 87 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHH
Confidence 55588999999999998877753 3445566788999999999999999999999999875 8889999999
Q ss_pred HHHHHHHHHhhcC---------------HHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLE---------------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~---------------~~~A~~~~~~al~~~~ 206 (303)
+..|.++. .+.. ..+|...|++.+...|
T Consensus 88 Y~~gL~~~-~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 88 YMRGLSYY-EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHH-HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 99999995 8776 7788888888888887
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00042 Score=54.68 Aligned_cols=175 Identities=13% Similarity=-0.037 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+++-|... ...|+|++|...|+..... . +..|....+...++ .++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~----L~~gn~~~A~~~fe~l~~~---~--p~s~~~~qa~l~l~----------yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTE----LQKGNYEEAIKYFEALDSR---H--PFSPYSEQAQLDLA----------YAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHH----HhcCCHHHHHHHHHHHHHc---C--CCCcccHHHHHHHH----------HHHHhcccHHHHHHHH
Confidence 45666667666 4899999999999876543 1 33444567777777 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHhcCCCchHHH-----------
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEAERMQLKAIAIKEKVLGKDDYEVG----------- 174 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------- 174 (303)
.+-+..+ |.+|....++...|.++... .-..+|..-+++.+.-+ |+++...
T Consensus 95 drFi~ly-----P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d 164 (254)
T COG4105 95 DRFIRLY-----PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLND 164 (254)
T ss_pred HHHHHhC-----CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHH
Confidence 9988874 56777777788778776553 22334555555555443 3333221
Q ss_pred ---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 175 ---LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 175 ---~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.--..+|..|. +.|.+--|+..++.+++-.+ ..+....++..+..+|...|-
T Consensus 165 ~LA~~Em~IaryY~-kr~~~~AA~nR~~~v~e~y~------------------------~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 165 ALAGHEMAIARYYL-KRGAYVAAINRFEEVLENYP------------------------DTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHHHHH-HhcChHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHHhCC
Confidence 12245788997 99999999999999988766 233566778889999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
.++|....+.+
T Consensus 220 ~~~a~~~~~vl 230 (254)
T COG4105 220 TDEAKKTAKVL 230 (254)
T ss_pred hHHHHHHHHHH
Confidence 99998876554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=55.08 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 138 IGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 138 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|..+|...+++++|++++++++.+. |.....+...|.++. .+|++++|...++++++..|++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCc
Confidence 4678999999999999999999874 666778999999997 9999999999999999988833
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=68.32 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=96.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...++++.|+..+++..+. .|.. ...++.++...++-.+|++.+.+++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 4445667889999888885552 3443 345899999999999999999999943 24447778
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
...|..+. ..|+++.|+.+.++++...| .....|..||.+|...|++++|+-
T Consensus 238 ~~Qa~fLl-~k~~~~lAL~iAk~av~lsP---------------------------~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 238 NLQAEFLL-SKKKYELALEIAKKAVELSP---------------------------SEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCc---------------------------hhHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999998 99999999999999999988 566779999999999999999998
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
....+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 66555
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00051 Score=58.71 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=115.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCC--cHH----HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch--
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSE--NLQ----VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-- 76 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~--~~~----~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 76 (303)
.+-++.+.++-++++..-++....+ .|- ....+.++..|- .-.|++.+|+.-.....+.+.+..++--
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~----lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR----LVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 4556777777777777655543322 111 234555666444 5799999999999999999887533211
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
...+.+...+| .-...-+.++.|+..|..|.+..... ...+.+..|+|.+|...|+-+.-.+.
T Consensus 364 ~~~~~ih~LlG----------lys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~-- 426 (629)
T KOG2300|consen 364 AHEAQIHMLLG----------LYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKA-- 426 (629)
T ss_pred HhHHHHHHHHh----------hHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHH--
Confidence 12445566666 33367889999999999999975432 23456678999999998776543333
Q ss_pred HHHHHHHHhcCCCc-------hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDD-------YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.. ++.+ ...+.+++--|... |.++++.||...+.+.+++..
T Consensus 427 --ld~i----~p~nt~s~ssq~l~a~~~~v~glfa-f~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 427 --LDLI----GPLNTNSLSSQRLEASILYVYGLFA-FKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred --HHhc----CCCCCCcchHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcc
Confidence 3321 2221 12344566667666 489999999999999999885
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-06 Score=70.53 Aligned_cols=73 Identities=18% Similarity=0.012 Sum_probs=62.9
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
..+|.....++|+| ..|...|+|++|+..|++++++. ++++....+++|+|.+|..+|++++|+.
T Consensus 69 ~~dP~~a~a~~NLG----------~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 69 EADVKTAEDAVNLG----------LSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred cCCCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677889999999 66699999999999999999972 4444444679999999999999999999
Q ss_pred HHHHHHHH
Q psy4339 154 MQLKAIAI 161 (303)
Q Consensus 154 ~~~~al~~ 161 (303)
++++|+++
T Consensus 134 ~LrrALel 141 (453)
T PLN03098 134 CLRTALRD 141 (453)
T ss_pred HHHHHHHh
Confidence 99999986
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.2e-05 Score=60.20 Aligned_cols=124 Identities=18% Similarity=0.059 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|..++.|..||.+| ..+|+++.|...|.+|+++. +++| ..+..+|.++ ..-.....-.+
T Consensus 151 ~nP~d~egW~~Lg~~y----m~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL-------~~~a~~~~ta~ 211 (287)
T COG4235 151 QNPGDAEGWDLLGRAY----MALGRASDALLAYRNALRLA-----GDNP---EILLGLAEAL-------YYQAGQQMTAK 211 (287)
T ss_pred hCCCCchhHHHHHHHH----HHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHH-------HHhcCCcccHH
Confidence 4688889999999877 79999999999999999982 3444 4444455333 11123335568
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
+...+++++.. +|....+...||..+...|+|.+|...++..++.. ..+.|....+-..++..
T Consensus 212 a~~ll~~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 212 ARALLRQALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 89999999985 45667888999999999999999999999988764 44555554444444443
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=55.26 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+-.=|+-+ +..|+|++|..-|..|++++... ........|.|.| .+...++.++.|+.-
T Consensus 94 kad~lK~EGN~~----F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nra----------aa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 94 KADSLKKEGNEL----FKNGDYEEANSKYQEALESCPST---STEERSILYSNRA----------AALIKLRKWESAIED 156 (271)
T ss_pred HHHHHHHHHHHh----hhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhH----------HHHHHhhhHHHHHHH
Confidence 456667778777 59999999999999999996543 1233567788888 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+|+++ .|....++...|..|..+.+|++|++-|++.+++.
T Consensus 157 csKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 157 CSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 9999997 45666778889999999999999999999998764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.7e-06 Score=51.94 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=46.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
...|++++|+..|++++.. +|....+...+|.+|...|++++|...+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4689999999999999986 45556778899999999999999999999988643
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=63.40 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=84.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+++++.|.+.++..-++ +++.. ..+++..|. ..+...+.+.+|...|++..+ ..
T Consensus 142 L~~~R~dlA~k~l~~~~~~-----~eD~~-----l~qLa~awv------~l~~g~e~~~~A~y~f~El~~--------~~ 197 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQI-----DEDSI-----LTQLAEAWV------NLATGGEKYQDAFYIFEELSD--------KF 197 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCC-----SCCHH-----HHHHHHHHH------HHHHTTTCCCHHHHHHHHHHC--------CS
T ss_pred HHcCCHHHHHHHHHHHHhc-----CCcHH-----HHHHHHHHH------HHHhCchhHHHHHHHHHHHHh--------cc
Confidence 5899999999888765433 22222 223332221 111333468899999888433 22
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY-HKAEKLYFRSIEINDN 207 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~-~~A~~~~~~al~~~~~ 207 (303)
+....+++.+|.++..+|+|++|...+++++.. .|....++.|++.+.. .+|+. +.+.+++.+.....|+
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSL-HLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHhCCC
Confidence 344567889999999999999999999998753 2445567889999987 89998 6677787777666664
Q ss_pred hhh
Q psy4339 208 LKL 210 (303)
Q Consensus 208 ~~~ 210 (303)
||.
T Consensus 269 h~~ 271 (290)
T PF04733_consen 269 HPL 271 (290)
T ss_dssp SHH
T ss_pred ChH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0012 Score=55.16 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---------hcC--------------CCchHHHHHHHHHHHHHHHhhcC
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEK---------VLG--------------KDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~--------------~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
....++.-+...|+.++|.+..+++++-... ..+ ..+|+....+..||..+. +.+.
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~ 343 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKL 343 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhH
Confidence 4456778888999999999999888764211 000 123344467889999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
|.+|..+++.+++..+ ....+..+|.++...|+..+|.+.. +.+
T Consensus 344 w~kA~~~leaAl~~~~----------------------------s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALKLRP----------------------------SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHhcCC----------------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999988766 2344788999999999999999944 444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=58.77 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAE 152 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~ 152 (303)
+|.-+.-+..|| .+|..+|+++.|...|.+|+++. +++| ..+..+|.++..+. .-.++.
T Consensus 152 nP~d~egW~~Lg----------~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 152 NPGDAEGWDLLG----------RAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred CCCCchhHHHHH----------HHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHH
Confidence 566667778888 77799999999999999999973 3444 44667787776654 356899
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+++++... |....+...||..+. .+|+|.+|...++..++..+
T Consensus 214 ~ll~~al~~D--------~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 214 ALLRQALALD--------PANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHhcC--------CccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCC
Confidence 9999998753 566788999999996 99999999999999998877
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.7e-06 Score=46.60 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
++.++.+||.++ ..+|++++|+.++++++++.++.+|++||+
T Consensus 1 ta~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAY----RAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHH----HHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHH----HhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 357899999777 699999999999999999999999999885
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00014 Score=55.67 Aligned_cols=99 Identities=16% Similarity=0.013 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+...+..++..| ++| -+.|-++-|.--|.+++.+ .|..+.+.+.+| .-+...|+|+.
T Consensus 60 ~~eeRA~l~fERG-vlY---DSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG----------~Yl~~a~~fda 117 (297)
T COG4785 60 TDEERAQLLFERG-VLY---DSLGLRALARNDFSQALAI--------RPDMPEVFNYLG----------IYLTQAGNFDA 117 (297)
T ss_pred ChHHHHHHHHHhc-chh---hhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHH----------HHHHhcccchH
Confidence 4556788899999 566 6999999999999999988 677888999999 44588999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
|.+.|...+++ +|..-.+..|-|..+..-|+|.-|.+-+.+
T Consensus 118 a~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 118 AYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 99999988885 344445566667666667777777665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0022 Score=53.53 Aligned_cols=187 Identities=10% Similarity=-0.030 Sum_probs=121.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+++.|-.+..++-+.. +++ ........+ .....+|+++.|.....++++.. +.+
T Consensus 129 ~qrgd~~~an~yL~eaae~~------~~~-~l~v~ltra----------rlll~~~d~~aA~~~v~~ll~~~-----pr~ 186 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELA------GDD-TLAVELTRA----------RLLLNRRDYPAARENVDQLLEMT-----PRH 186 (400)
T ss_pred HhcccHHHHHHHHHHHhccC------CCc-hHHHHHHHH----------HHHHhCCCchhHHHHHHHHHHhC-----cCC
Confidence 47899999999998876651 122 223334445 55578999999999998888852 334
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH-------------------HHHhcC-CC----------chH----HH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI-------------------KEKVLG-KD----------DYE----VG 174 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~-~~----------~~~----~~ 174 (303)
| ..+.-...+|...|++.+...++.+.-+. ..+... .. .|. .+
T Consensus 187 ~---~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 187 P---EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred h---HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 4 44556678889999988887777543221 000000 00 000 12
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----hhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL-----EYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.....++.-+. ..|+.++|.+..+++++..-+ |.+...+-.+ +...++.+.....+|+.+..+..||..+.+.
T Consensus 264 ~l~~~~a~~li-~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 264 ELVVAYAERLI-RLGDHDEAQEIIEDALKRQWD-PRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred hHHHHHHHHHH-HcCChHHHHHHHHHHHHhccC-hhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 23445666676 889999999999999976543 2222222222 3334555555566777778899999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
+.+.+|..++++.
T Consensus 342 ~~w~kA~~~leaA 354 (400)
T COG3071 342 KLWGKASEALEAA 354 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999977654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0001 Score=52.94 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
...+..-|.-....|+|++|++.|+.....+ +..+....+...+|.+|. ..|++++|+..+++-+++.|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP----- 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHP----- 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC-----
Confidence 3457788999999999999999998876544 445666788999999994 99999999999999999888
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.||....+++..|.++..+..
T Consensus 79 -------------------~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 79 -------------------THPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHhh
Confidence 455666667777777666654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00072 Score=50.62 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=92.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
....+.|++.+|...|++++.- -.......+..++......+++..|...+++..+.- .. -......
T Consensus 97 ~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~---pa---~r~pd~~ 163 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN---PA---FRSPDGH 163 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC---Cc---cCCCCch
Confidence 6668999999999999999873 122334567789999999999999999998876542 11 1123345
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.-+|.++. .+|++.+|...|+.++...| + .......+..+.++|+.++|..
T Consensus 164 Ll~aR~la-a~g~~a~Aesafe~a~~~yp---------------------------g-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLA-AQGKYADAESAFEVAISYYP---------------------------G-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHH-hcCCchhHHHHHHHHHHhCC---------------------------C-HHHHHHHHHHHHHhcchhHHHH
Confidence 67899998 99999999999999998887 1 1234557788889998888887
Q ss_pred -HHHHH
Q psy4339 258 -FTNKL 262 (303)
Q Consensus 258 -~~~~~ 262 (303)
+....
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 54443
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00035 Score=57.48 Aligned_cols=173 Identities=18% Similarity=0.089 Sum_probs=107.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
...+|..|+..++-.+..- ..+-......+| .++...|+|++|+..|.-+..- .+.|
T Consensus 34 s~rDytGAislLefk~~~~-------~EEE~~~~lWia----------~C~fhLgdY~~Al~~Y~~~~~~------~~~~ 90 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD-------REEEDSLQLWIA----------HCYFHLGDYEEALNVYTFLMNK------DDAP 90 (557)
T ss_pred hcccchhHHHHHHHhhccc-------hhhhHHHHHHHH----------HHHHhhccHHHHHHHHHHHhcc------CCCC
Confidence 6789999999888766431 222234555667 7779999999999999876651 1222
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH----------HHHhcCCC---------chHHHHHHHHHHHHHHHhhcC
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI----------KEKVLGKD---------DYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~~g~ 190 (303)
+....+||.|+..+|.|.+|.....+|-+. .-+ ++.. -.++..-...||.+. |..-.
T Consensus 91 --~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvh-YmR~H 166 (557)
T KOG3785|consen 91 --AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVH-YMRMH 166 (557)
T ss_pred --cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHH-HHHHH
Confidence 345679999999999999999888766211 001 0000 011223345677777 47888
Q ss_pred HHHHHHHHHHHHHhhhhh----hhhhhhhhhhhhhHHH---HhhhccccccHHHHHHhHHHHHHhh
Q psy4339 191 YHKAEKLYFRSIEINDNL----KLFSASYSGLEYHYRD---LKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~----~~~~~~~~~l~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
|.+|++.|++++.-.++. -.++-+++.+.+..-+ +..+-..+|+...+.+..+-..++.
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999998766632 1345555555544422 3444445555544454444444443
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=63.85 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=87.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.|+.+|.|++|+++|.+++.. +|.....+.|.|..|..+++|..|+.-+..|+.+.+ ....+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y~KAY 168 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LYVKAY 168 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HHHHHH
Confidence 8889999999999999999986 233345678999999999999999999999998863 356788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE 219 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~ 219 (303)
...|.+-. .+|+..+|.+-++.++.+-|+.-.+...+..+.
T Consensus 169 SRR~~AR~-~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 169 SRRMQARE-SLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHHH-HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 89999986 999999999999999999886555544444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=49.89 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+|...+++++|++++++++.+ +|.....+...|.++..+|++++|...++++++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5668999999999999999997 45566778899999999999999999999999764
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0034 Score=53.86 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+.-+| .|- ...+.|+.|+..|..|.+..+.. .-.+.+..|+| .+|.+.|+-+.-.+
T Consensus 366 ~~~ih~LlG-lys---~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlA----------i~YL~~~~~ed~y~- 425 (629)
T KOG2300|consen 366 EAQIHMLLG-LYS---HSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLA----------ISYLRIGDAEDLYK- 425 (629)
T ss_pred HHHHHHHHh-hHh---hhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHH----------HHHHHhccHHHHHH-
Confidence 456777778 343 68999999999999999884431 22667778888 55677666544332
Q ss_pred HHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGEN-------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 113 ~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+++.. ++. +...+.+++--|...+.++++.||...+.+.+++.... +....++-.+.-||.+..
T Consensus 426 ---~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~l 496 (629)
T KOG2300|consen 426 ---ALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFL 496 (629)
T ss_pred ---HHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHH
Confidence 33321 122 12345677778888899999999999999999986321 223445666788999996
Q ss_pred HhhcCHHHHHHHHHHHHHhhh
Q psy4339 186 YHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~ 206 (303)
..|+..++....+-+++...
T Consensus 497 -slgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 497 -SLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred -HhcchHHHHhccchHHHHHh
Confidence 99999999999999999888
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=44.49 Aligned_cols=105 Identities=15% Similarity=0.025 Sum_probs=80.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCC---c-HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc----h
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGEN---N-VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD----Y 171 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~ 171 (303)
....|-|++|...+++|+++...+.... + ...+.++..|+..+..+|+|++++..-.+++..+.+. |.-+ .
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccccccch
Confidence 3567899999999999999987663322 1 1245678889999999999999999999999887664 2222 2
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+.+.++.|..+. ..|+.++|+..|+.+-++..
T Consensus 98 lWIaaVfsra~Al~-~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 98 LWIAAVFSRAVALE-GLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHH
Confidence 35566788999998 99999999999999988765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=55.46 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=83.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-----chHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD-----DYEVGL 175 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~ 175 (303)
.....+++|++.|.-|+-.... .+.++...+..+..+|++|..+|+-+....++++|++.+++.+... ......
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3456788999999998887654 3445567888999999999999998888888888888877754222 234567
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++-+|.+.. +.|++++|..++.+++....
T Consensus 167 l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNR-RLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHcCCC
Confidence 8889999997 99999999999999987544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0023 Score=56.64 Aligned_cols=172 Identities=16% Similarity=-0.011 Sum_probs=111.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhH---HHHHHHHHHHHHHhhhhHHHH--hhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLT---SAHRVKALILEEIALDSNELI--SVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-.||-+.++..+.++.+. .+-..|... -.|+..- .. .+-. .....+.|.+.+......
T Consensus 200 F~gdR~~GL~~L~~~~~~----~~i~~~la~L~LL~y~~~~-~~-------~~~~~~~~~~~~~a~~lL~~~~~~----- 262 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS----ENIRSPLAALVLLWYHLVV-PS-------FLGIDGEDVPLEEAEELLEEMLKR----- 262 (468)
T ss_pred cCCcHHHHHHHHHHHhcc----CCcchHHHHHHHHHHHHHH-HH-------HcCCcccCCCHHHHHHHHHHHHHh-----
Confidence 468999999999887552 111222211 1111111 00 0001 344556666666666664
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 125 GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 125 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.|.-.-.+..-|.++...|+.++|++.+++++...... ..-...+++.+|.++. .+++|++|..++.+..+.
T Consensus 263 ---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 ---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred ---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhc
Confidence 34445567789999999999999999999998643332 1223456889999998 999999999999998875
Q ss_pred hhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH-------HHHHHHHHHHHHHHHHHhhhhcC
Q psy4339 205 NDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF-------EKMTEFTNKLSEWKILRETNELN 275 (303)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~ 275 (303)
.. ...+...+..|.++...|+. ++|.++++.+ ..+..+..|.
T Consensus 335 s~--------------------------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v---p~l~~k~~gk 383 (468)
T PF10300_consen 335 SK--------------------------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV---PKLKQKKAGK 383 (468)
T ss_pred cc--------------------------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH---HHHHhhhccC
Confidence 44 12444567788888888888 7777766555 4444444443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=56.47 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.+..-.+|+.|+..|.+++.+ +|..+..+.|-|.|+.++++++....-..+|+++. |+.+..+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~vk~h 81 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNLVKAH 81 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHHHHHH
Confidence 5557778999999999999986 56677789999999999999999999999999875 7788999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
+.+|.... ....|++|+..+.+|.++...
T Consensus 82 ~flg~~~l-~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 82 YFLGQWLL-QSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHH-hhccccHHHHHHHHHHHHHhc
Confidence 99999998 999999999999999988873
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0027 Score=50.26 Aligned_cols=172 Identities=16% Similarity=0.033 Sum_probs=117.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+.+++|++.|+....- -+..|..-.+...++.++| ..++|++|+....+-+... +.+|+..-+++
T Consensus 47 ~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Y----k~~~y~~A~~~~drFi~ly-----P~~~n~dY~~Y 112 (254)
T COG4105 47 KGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYY----KNGEYDLALAYIDRFIRLY-----PTHPNADYAYY 112 (254)
T ss_pred cCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHH----hcccHHHHHHHHHHHHHhC-----CCCCChhHHHH
Confidence 34455555555544422 2445666788899998886 9999999999999988773 56788888888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc---------HHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN---------VQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
..|+++.. .++ .....+.-..+|..-++..+.-+....-..+ ...+.--..+|..|.+.|.+--|...+
T Consensus 113 lkgLs~~~-~i~-~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 113 LKGLSYFF-QID-DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHhc-cCC-ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 88865310 000 2335555566777777777765432100000 012222346899999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
+++++-. ++.+.+..++..+..+|. .+|-.++|...-
T Consensus 191 ~~v~e~y-----~~t~~~~eaL~~l~eaY~-~lgl~~~a~~~~ 227 (254)
T COG4105 191 EEVLENY-----PDTSAVREALARLEEAYY-ALGLTDEAKKTA 227 (254)
T ss_pred HHHHhcc-----ccccchHHHHHHHHHHHH-HhCChHHHHHHH
Confidence 9998876 445677788999999996 999999998764
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=53.33 Aligned_cols=187 Identities=16% Similarity=0.072 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
..+|....-...-+..+| +.+.+..|+....... +++. ...+...-+ .+.+..+++
T Consensus 72 ql~P~~~qYrlY~AQSLY----~A~i~ADALrV~~~~~---------D~~~L~~~~lqLqa----------AIkYse~Dl 128 (459)
T KOG4340|consen 72 QLHPELEQYRLYQAQSLY----KACIYADALRVAFLLL---------DNPALHSRVLQLQA----------AIKYSEGDL 128 (459)
T ss_pred hhChHHHHHHHHHHHHHH----HhcccHHHHHHHHHhc---------CCHHHHHHHHHHHH----------HHhcccccC
Confidence 345666655555566665 6777777766554321 1122 222222222 222455555
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
..+....++ ..+ ...+....+.|-+..+.|+++.|++-|+.|++.. +..|.+ -+++|.++ |
T Consensus 129 ~g~rsLveQ-------lp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-----Gyqpll---AYniALaH-y 189 (459)
T KOG4340|consen 129 PGSRSLVEQ-------LPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQPLL---AYNLALAH-Y 189 (459)
T ss_pred cchHHHHHh-------ccC---CCccchhccchheeeccccHHHHHHHHHHHHhhc-----CCCchh---HHHHHHHH-H
Confidence 554443332 211 2345677899999999999999999999999864 455554 47899999 5
Q ss_pred hhcCHHHHHHHHHHHHHhhh-hhhhhhhhh--hhhhhhHHHHh-hhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 187 HMLEYHKAEKLYFRSIEIND-NLKLFSASY--SGLEYHYRDLK-LFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~--~~l~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
+.|+++.|.++..+.++-.. +||.+++-. .... -+.+. ...-.......+.+--+.++.+.|+++.|.+-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD--vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGID--VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc--hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence 99999999999988876443 566543221 1110 00000 00000112445566667788888888888763
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0025 Score=43.89 Aligned_cols=123 Identities=16% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh----hHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL----LTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
++.+|..|+..-- +..-|-|++|..-+++|+++...+....-.+ -+.++..|+ ..+...|+|++
T Consensus 6 Va~aY~aLs~ae~--ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls----------~A~~~Lgry~e 73 (144)
T PF12968_consen 6 VAMAYMALSDAER--QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLS----------GALAGLGRYDE 73 (144)
T ss_dssp HHHHHHHHHHHHH--HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHH----------HHHHHTT-HHH
T ss_pred HHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHH----------HHHHhhccHHH
Confidence 4455555553321 1257899999999999999987764433222 455666666 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 109 AELLHQNALVLSLKHFGE---NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
++....+++..+.....- .....+.+.++-|..+...|+.++|+..|+.+-++....-|
T Consensus 74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 999999999988764211 12345667788999999999999999999999887765433
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=59.92 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+-.-|+.| +.+|.|++|+++|.+++.. +|...-.+.|.| ..|.++..|..|+.-+..|
T Consensus 100 iKE~GN~y----FKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA----------~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 100 IKERGNTY----FKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRA----------LAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred HHHhhhhh----hhccchhHHHHHhhhhhcc--------CCCCccchhhHH----------HHHHHHHHHHHHHHhHHHH
Confidence 35567777 6999999999999999887 344445667778 6779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+ +.....+|...|..-..+|...+|.+-++.++++.
T Consensus 158 iaL--------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 158 IAL--------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHh--------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 997 33567788899999999999999999999998874
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0047 Score=48.44 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=74.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHH
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSV 177 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~ 177 (303)
++...|+++.|...+.+++... +........+...+..+...+++++|+..+.+++... +. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN--------PDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHH
Confidence 3466777777777777774421 0001333444555555667777777777777776654 22 34556
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..++..+. ..+++++|...+.+++...+ ........++..+...|+++++..
T Consensus 206 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 206 LNLGLLYL-KLGKYEEALEYYEKALELDP---------------------------DNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHhhHHHH-HcccHHHHHHHHHHHHhhCc---------------------------ccHHHHhhHHHHHHHcCCHHHHHH
Confidence 67777775 77777777777777776666 233446666777776666777777
Q ss_pred HH
Q psy4339 258 FT 259 (303)
Q Consensus 258 ~~ 259 (303)
..
T Consensus 258 ~~ 259 (291)
T COG0457 258 AL 259 (291)
T ss_pred HH
Confidence 44
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.019 Score=52.96 Aligned_cols=198 Identities=13% Similarity=-0.068 Sum_probs=127.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+...+.+...+|.+++ ....++++|+.++++++.+.++. .-......+...++ .++...+...
T Consensus 54 ~p~~ea~~~l~la~iL~---~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~----------~i~~~~~~~~- 117 (608)
T PF10345_consen 54 SPRQEARVRLRLASILL---EETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLA----------RIYFKTNPKA- 117 (608)
T ss_pred CHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHH----------HHHHhcCHHH-
Confidence 33457889999999997 79999999999999999997651 11111334444555 5556666666
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNI-GRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
|...++++++.++.. .+......+.-+ .......+++..|++.++......... .++.-...+....|.+.. .
T Consensus 118 a~~~l~~~I~~~~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l-~ 191 (608)
T PF10345_consen 118 ALKNLDKAIEDSETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHL-R 191 (608)
T ss_pred HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHh-c
Confidence 999999999987752 122222222223 333333489999999999998887542 232333344455567776 7
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhh--hccccccHHHHHHhHHHH--HHhhhcHHHHHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKL--FSASYSGLEYDYRGLIHV--YECLENFEKMTEFTNKLS 263 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~~ 263 (303)
.+..+++++..+++..... .. -+..++....++..+-.+ +...|+++.+....+.+.
T Consensus 192 ~~~~~d~~~~l~~~~~~~~-------------------~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQAR-------------------SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCchhHHHHHHHHHHHHh-------------------hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999977665 21 111233333444444333 446778888888776664
Q ss_pred HHHH
Q psy4339 264 EWKI 267 (303)
Q Consensus 264 ~~~~ 267 (303)
..-.
T Consensus 253 ~~~~ 256 (608)
T PF10345_consen 253 QFLD 256 (608)
T ss_pred HHHH
Confidence 4333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0061 Score=55.78 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=82.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH----HHHHHhcCCCchH---------HHHHHHHHHHHHHHhhcCHHH
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI----AIKEKVLGKDDYE---------VGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~g~~~~ 193 (303)
+....-.+|++.|.-+...++.+.|+++|+++- ++.+-. ..+++. ....|..+|.... ..|+.+.
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~Gemda 930 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDA 930 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHh-cccchHH
Confidence 344556789999999999999999999999862 221111 111111 1245677898887 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+.+|..|-..+. .+. ..-..+...+|-....+. ....+.+.||..|...|+..+|..++..+
T Consensus 931 Al~~Y~~A~D~fs---~Vr-I~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFS---MVR-IKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhhhhhh---hee-eEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999998876554 010 011112222332222221 23345778999999999999999966444
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0035 Score=49.91 Aligned_cols=210 Identities=13% Similarity=0.071 Sum_probs=133.8
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
.+.|...|++++++- |+....-..++-.+-.+. +.+++|++.+..|.+.+...+.....+..... .+.+-
T Consensus 43 p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~----f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs--IN~Il 112 (440)
T KOG1464|consen 43 PKEALSSFQKVLELE----GEKGEWGFKALKQMIKIN----FRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS--INSIL 112 (440)
T ss_pred HHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHhccccHHH--HHHHH
Confidence 456777777777662 333333456677777677 59999999999999999988776555444311 11111
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..-....+.+--.+.|+..++..++. .+......+-..||.+|...+.|.+-.+.+++.-..+..-.|
T Consensus 113 ----------DyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 113 ----------DYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ----------HHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 11123344455555666666655543 223333445567999999999999988888887777665555
Q ss_pred CCch----HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH-HHHHhH
Q psy4339 168 KDDY----EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE-YDYRGL 242 (303)
Q Consensus 168 ~~~~----~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~-~~~~~l 242 (303)
.++. ....++.---..|. .+++-.+-..+|++++.+.. .-.||... .+.-.=
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT-~qKnNKkLK~lYeqalhiKS----------------------AIPHPlImGvIRECG 237 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYT-EQKNNKKLKALYEQALHIKS----------------------AIPHPLIMGVIRECG 237 (440)
T ss_pred chhhhccchhhhhHhhHhhhhh-hhcccHHHHHHHHHHHHhhc----------------------cCCchHHHhHHHHcC
Confidence 4432 23444544556776 78888888889999998766 23355433 233445
Q ss_pred HHHHHhhhcHHHHHH-HHHHH
Q psy4339 243 IHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 243 a~~~~~~g~~~~A~~-~~~~~ 262 (303)
|.++...|++++|.. ++++.
T Consensus 238 GKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CccccccchHHHHHhHHHHHH
Confidence 667777788888877 77766
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0036 Score=49.62 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
+.+.+..++ .-.|.|.-+.+.+.+.++. ..+..|.+ ...+| .+-+..|+.+.|..+|++
T Consensus 179 Vmy~~~~~l----lG~kEy~iS~d~~~~vi~~----~~e~~p~L---~s~Lg----------r~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 179 VMYSMANCL----LGMKEYVLSVDAYHSVIKY----YPEQEPQL---LSGLG----------RISMQIGDIKTAEKYFQD 237 (366)
T ss_pred HHHHHHHHH----hcchhhhhhHHHHHHHHHh----CCcccHHH---HHHHH----------HHHHhcccHHHHHHHHHH
Confidence 444455455 4778888888888887773 12334444 44455 444889999999999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHH
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~ 195 (303)
.-+...+..+. ........+.+.+|.-.+++.+|...+.+++... +..+.+.++.|.+.. -.|+..+|+
T Consensus 238 vek~~~kL~~~--q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcll-Ylg~l~DAi 306 (366)
T KOG2796|consen 238 VEKVTQKLDGL--QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLL-YLGKLKDAL 306 (366)
T ss_pred HHHHHhhhhcc--chhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHH-HHHHHHHHH
Confidence 87765554222 2233456788999999999999999999887642 555667789999998 699999999
Q ss_pred HHHHHHHHhhh
Q psy4339 196 KLYFRSIEIND 206 (303)
Q Consensus 196 ~~~~~al~~~~ 206 (303)
+..+.++.+.|
T Consensus 307 K~~e~~~~~~P 317 (366)
T KOG2796|consen 307 KQLEAMVQQDP 317 (366)
T ss_pred HHHHHHhccCC
Confidence 99999998888
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0025 Score=57.53 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=95.5
Q ss_pred hhcccHHHHHHHHHHH------HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH----
Q psy4339 49 YSSGRFTESRRHAEKA------IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALV---- 118 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---- 118 (303)
.+..++++|+++|++. +++.+-.+... ....--..| .-+..+|+++.|+..|-+|-.
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~e---vv~lee~wg----------~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEE---VVKLEEAWG----------DHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH---HhhHHHHHh----------HHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 5777888888887753 34433322111 111111223 333566777777766654332
Q ss_pred ---------------HHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH-------------------HHHHHH
Q psy4339 119 ---------------LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA-------------------IAIKEK 164 (303)
Q Consensus 119 ---------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------------------l~~~~~ 164 (303)
+...+ .+.......|..+|.-|...|+|+-|+++|.++ .++.++
T Consensus 739 ieaai~akew~kai~ildni--qdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNI--QDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHh--hhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 22211 111122234556777788888888887777443 233333
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH------HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHH
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY------FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEY 237 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~ 237 (303)
..|+ ..+...+...+.-+. ..|+|.+|..+| .+++.+...+.. ...-+...+..|++ ...
T Consensus 817 ~~~~--e~t~~~yiakaedld-ehgkf~eaeqlyiti~~p~~aiqmydk~~~----------~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 817 CHGP--EATISLYIAKAEDLD-EHGKFAEAEQLYITIGEPDKAIQMYDKHGL----------DDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred hcCc--hhHHHHHHHhHHhHH-hhcchhhhhheeEEccCchHHHHHHHhhCc----------chHHHHHHHHhChhhhhH
Confidence 3333 334556677777777 889998888777 244444432111 11111223333443 234
Q ss_pred HHHhHHHHHHhhhcHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~ 257 (303)
....+|.-+...|+.+.|.+
T Consensus 884 t~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHHHHHHhccChhHHHH
Confidence 45567777777777666666
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0015 Score=56.38 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=95.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh-hhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS-VQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...+...-++...+|+++ +|+.+.+|..+| .. .....+|+++++++++..+..++.+.
T Consensus 180 RERnp~aRIkaA~eALei--------~pdCAdAYILLA-------------EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--------NPDCADAYILLA-------------EEEASTIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcc-------------cccccCHHHHHHHHHHHHHHHHHhhchhh
Confidence 678888999999999998 577788888777 32 33468899999999988776554321
Q ss_pred H-----------------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 129 V-----------------QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 129 ~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
. ....+-..+|+|..++|+.+||++.+++.++.. + ..+...+..+|..++. .++.|
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-----p-~~~~l~IrenLie~LL-elq~Y 311 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-----P-NLDNLNIRENLIEALL-ELQAY 311 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-----C-ccchhhHHHHHHHHHH-hcCCH
Confidence 0 123455689999999999999999999887643 1 1235668899999998 99999
Q ss_pred HHHHHHHHHH
Q psy4339 192 HKAEKLYFRS 201 (303)
Q Consensus 192 ~~A~~~~~~a 201 (303)
.++...+.+-
T Consensus 312 ad~q~lL~kY 321 (539)
T PF04184_consen 312 ADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHh
Confidence 9988887763
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00069 Score=52.00 Aligned_cols=160 Identities=13% Similarity=-0.027 Sum_probs=113.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+...+..+...| ..|-..|-+.-|.--|.+++.+ .|....+++.+|..+...|+|+-|.+.|
T Consensus 61 ~eeRA~l~fERG----------vlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 61 DEERAQLLFERG----------VLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred hHHHHHHHHHhc----------chhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHh
Confidence 334566777777 6667888888888889999987 4566778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------------
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL----------------- 218 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l----------------- 218 (303)
...+++. |..-.+..|.|..+. --|++.-|.+-+.+-.+-.|++|.-.-.++-.
T Consensus 123 ds~~ELD--------p~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 123 DSVLELD--------PTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred hhHhccC--------CcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 9998764 555567778888884 68999999888887777766665322222111
Q ss_pred -----------------h-----hhHHHHhhhccccc----cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 219 -----------------E-----YHYRDLKLFSASYS----GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 219 -----------------~-----~~~~a~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+ .+.+..+....++. ....+++-||..+...|+.++|..+++..
T Consensus 194 ~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 194 EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 0 01111122222211 24567889999999999999999866544
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.015 Score=53.33 Aligned_cols=206 Identities=17% Similarity=0.080 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH----HHHHhhCCcchhhh----------HHHHHHHHHHHHHHhhhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAI----QTFKNLLPENHLLL----------TSAHRVKALILEEIALDS 97 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~ 97 (303)
..-.++++.|.-+ ...++.+.|+++|+++- ++..-. .++|.. ...+..-|
T Consensus 856 HLr~Tyy~yA~~L----ear~Di~~AleyyEK~~~hafev~rmL--~e~p~~~e~Yv~~~~d~~L~~WWg---------- 919 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYL----EARRDIEAALEYYEKAGVHAFEVFRML--KEYPKQIEQYVRRKRDESLYSWWG---------- 919 (1416)
T ss_pred ehhhhHHHHHHHH----HhhccHHHHHHHHHhcCChHHHHHHHH--HhChHHHHHHHHhccchHHHHHHH----------
Confidence 3445677777544 68889999999998763 221111 111211 12333344
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh-----hCCCc--------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH----
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKH-----FGENN--------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA---- 160 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 160 (303)
......|+.+.|+.+|..|-+.+... .|.-+ .....+.+.||..|...|++.+|+.+|.+|-.
T Consensus 920 qYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 920 QYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred HHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44478899999999999988876432 11111 11223456899999999999999999987643
Q ss_pred --HHHHhcCCCchH-HH--------HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhh
Q psy4339 161 --IKEKVLGKDDYE-VG--------LSVGHLASLYNYHML-EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 161 --~~~~~~~~~~~~-~~--------~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~ 228 (303)
+++.. +-.+ .+ .-+...|..|. ..| ..+.|..+|.+|=-+... ..++.. .....+++..
T Consensus 1000 IRlcKEn---d~~d~L~nlal~s~~~d~v~aArYyE-e~g~~~~~AVmLYHkAGm~~kA-LelAF~----tqQf~aL~lI 1070 (1416)
T KOG3617|consen 1000 IRLCKEN---DMKDRLANLALMSGGSDLVSAARYYE-ELGGYAHKAVMLYHKAGMIGKA-LELAFR----TQQFSALDLI 1070 (1416)
T ss_pred HHHHHhc---CHHHHHHHHHhhcCchhHHHHHHHHH-HcchhhhHHHHHHHhhcchHHH-HHHHHh----hcccHHHHHH
Confidence 33331 1011 00 01223344454 555 666676666655333320 000000 0001122221
Q ss_pred ccc-cc-cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 SAS-YS-GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++ ++ ..+..+..-+..+....+|++|..++-..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 11 12344677788888999999998855443
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0003 Score=54.61 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+.-+..-|+.+ +...+|+.|+++|.+|+.+ +|..+.-+.|-+ .+|....+++.+..-.
T Consensus 10 a~qlkE~gnk~----f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnra----------lchlk~~~~~~v~~dc 67 (284)
T KOG4642|consen 10 AEQLKEQGNKC----FIPKRYDDAIDCYSRAICI--------NPTVASYYTNRA----------LCHLKLKHWEPVEEDC 67 (284)
T ss_pred HHHHHhccccc----cchhhhchHHHHHHHHHhc--------CCCcchhhhhHH----------HHHHHhhhhhhhhhhH
Confidence 44455567677 4788999999999999987 676677788888 6668999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
++++++ .|..+...+.+|.+......|++|+..+++|..+.+..
T Consensus 68 rralql--------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 68 RRALQL--------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHhc--------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 999997 56778888999999999999999999999999988764
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00053 Score=53.76 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=78.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-----hhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-----LLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~ 80 (303)
..++.|+..|..|+-..+.. +.++...+..+..+|++| +..|+-+....++++|++.+++.+...+ .+..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWly----R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLY----RDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHh----hccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 35788999999999886643 455567899999999766 8999988888889999888877643222 2345
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL 119 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 119 (303)
.+.+.+| .+.++.|++++|..+|.+++..
T Consensus 166 ~l~YLig----------eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIG----------ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHH----------HHHHHhCCHHHHHHHHHHHHcC
Confidence 6778888 6679999999999999999885
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0024 Score=50.56 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++.-.|+|.-++..+.+.++. ++|........||.+-++-|+.+-|..+++++-+...+..+ ......+.
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~ 255 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVL 255 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHH
Confidence 6667889999999999998883 34444556678999999999999999999987765544422 23345677
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.+.+|. .++++.+|...+.+++...+
T Consensus 256 ~n~a~i~l-g~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 256 MNSAFLHL-GQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred hhhhhhee-cccchHHHHHHHhhccccCC
Confidence 88999998 99999999999999887666
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0087 Score=45.32 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=73.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++.++.... |.....-+-.+||.+...+|.+++|+..+.... ++...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~ 162 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVA 162 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHH
Confidence 667899999999999999987532 233344556789999999999999998886542 223344456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.++. ..|+-++|...|++++....
T Consensus 163 elrGDill-~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 163 ELRGDILL-AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHhhhHHH-HcCchHHHHHHHHHHHHccC
Confidence 67899998 99999999999999998754
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0049 Score=59.36 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=128.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++.++|.+..++|+....-.-+.+......++.|+- ..-|.-+.-.+.|++|.+.+.
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE-------------n~yG~eesl~kVFeRAcqycd------- 1528 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE-------------NAYGTEESLKKVFERACQYCD------- 1528 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH-------------HhhCcHHHHHHHHHHHHHhcc-------
Confidence 489999999999999998752211122233555555555 233455566777888777632
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN- 207 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~- 207 (303)
| ...+..|..+|..-+++++|.++++..++-+. ....+|..+|..+. ++.+-+.|...+.+|++-.|.
T Consensus 1529 ~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1529 A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchh
Confidence 2 34678899999999999999999999887652 34567888999997 899999999999999999986
Q ss_pred -hhhhhhhhhhh----hhhHHH---HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 208 -LKLFSASYSGL----EYHYRD---LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 208 -~~~~~~~~~~l----~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
|-.+..-..+| +...++ ++..-..+|.....|.-+.+.-.+.|+.+.+..+++.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 44443334444 334443 3444445666667787788888888888888885443
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0052 Score=54.61 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=111.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHh----hCCcchhh
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN----LLPENHLL 78 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~ 78 (303)
.....+++|..+|++|.++-- +.-.+.+.++..-|..- ....+++.|+.+.++|.-.-.. .+...+|.
T Consensus 398 e~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemE----lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEME----LRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHH----HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 345678888888888887621 12235677777777655 4778899999999888754221 12233343
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
....+..+- ++.... +.-...|-++.....|.+.+++.- -.| .+..|.|.++....-|++|.+.|++.
T Consensus 470 Q~rlhrSlk-iWs~y~---DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 470 QARLHRSLK-IWSMYA---DLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred HHHHHHhHH-HHHHHH---HHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 333332221 111111 333444555555666666666521 233 45668899999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+++= +.-.+....|......- |.-.+.+.|..+|++|++.+|
T Consensus 538 I~LFk~---p~v~diW~tYLtkfi~r-ygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 538 ISLFKW---PNVYDIWNTYLTKFIKR-YGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred CccCCC---ccHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCC
Confidence 988621 22223333344444343 355689999999999999888
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0026 Score=47.74 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
+..-...||+.+ ...|++.+|..+|++++.-. + .+++ ..+..++ ......+++..|...
T Consensus 88 Tvqnr~rLa~al----~elGr~~EA~~hy~qalsG~---f-A~d~---a~lLglA----------~Aqfa~~~~A~a~~t 146 (251)
T COG4700 88 TVQNRYRLANAL----AELGRYHEAVPHYQQALSGI---F-AHDA---AMLLGLA----------QAQFAIQEFAAAQQT 146 (251)
T ss_pred hHHHHHHHHHHH----HHhhhhhhhHHHHHHHhccc---c-CCCH---HHHHHHH----------HHHHhhccHHHHHHH
Confidence 445677888888 69999999999999998642 1 1222 3444455 556888999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++..+.-.. .........+|.++..+|++.+|+..|+.++..+ +. + ..-...+..+. ++|+.+
T Consensus 147 Le~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg-~---~ar~~Y~e~La-~qgr~~ 210 (251)
T COG4700 147 LEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG-P---QARIYYAEMLA-KQGRLR 210 (251)
T ss_pred HHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC-H---HHHHHHHHHHH-Hhcchh
Confidence 8887774211 1122345678999999999999999999999865 21 2 23345567776 899999
Q ss_pred HHHHHHHHHHHhhh
Q psy4339 193 KAEKLYFRSIEIND 206 (303)
Q Consensus 193 ~A~~~~~~al~~~~ 206 (303)
+|..-+....+...
T Consensus 211 ea~aq~~~v~d~~~ 224 (251)
T COG4700 211 EANAQYVAVVDTAK 224 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887776665433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.021 Score=52.80 Aligned_cols=176 Identities=15% Similarity=0.025 Sum_probs=108.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+.++|+++.+.++...... .....+.++.++| .+..-.|++++|..+.+.+.+..++. ...
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~----------~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~ 533 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLG----------EAAHIRGELTQALALMQQAEQMARQH--DVY 533 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhh----------HHHHHhchHHHHHHHHHHHHHHHHHc--ccH
Confidence 46999999999999999874332 2222456677777 66689999999999999999988764 233
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.....+....+.++..+|+...|.. .++....+.......|.........+.++. ..-+++.+..-....++...
T Consensus 534 ~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~-~~~r~~~~~~ear~~~~~~~-- 608 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLR-AWLRLDLAEAEARLGIEVGS-- 608 (894)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHhhhhHHhhhcchhhh--
Confidence 3445566778899999994333222 222222222112222322222233333332 33347777777777776654
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...........+...|+.+....|+.++|......+
T Consensus 609 ------------------~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 609 ------------------VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred ------------------hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111121123334468999999999999999866544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0035 Score=46.87 Aligned_cols=94 Identities=23% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q psy4339 54 FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133 (303)
Q Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 133 (303)
|+.|.+.++..... +|.-+..+++-|..+.+++-....-....-+++|+.-|++|+.+ +|....
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 34455555444433 45556777777765543331111112234556666666666665 466678
Q ss_pred HHHHHHHHHHHhhc----HHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----FDEAERMQLKAIAIKE 163 (303)
Q Consensus 134 ~~~~la~~~~~~~~----~~~A~~~~~~al~~~~ 163 (303)
++.++|++|..++. ..+|..+|++|.+-++
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 88999999988765 2345555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00088 Score=49.97 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
-|+.|.+.++..... +|.....+++=|..+..+.++ .++.+++++|+.-++....- +|....+++++|
T Consensus 6 ~FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lG 76 (186)
T PF06552_consen 6 FFEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHH
Confidence 345555555554443 455566777777777776555 34656666665554443222 267778899999
Q ss_pred HHHHHhhcC-----------HHHHHHHHHHHHHhhh
Q psy4339 182 SLYNYHMLE-----------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 182 ~~~~~~~g~-----------~~~A~~~~~~al~~~~ 206 (303)
.+|. .++. |++|..+|++|....|
T Consensus 77 nA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 77 NAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 9996 7764 4555555555555555
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=44.56 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=62.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGEN-NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
...|+|..|.+.+.+..+......... ......+..++|.++...|++++|+..+++|+++.++. .|......++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 678999999999999999876643222 12355678899999999999999999999999999886 444455555555
Q ss_pred HHHH
Q psy4339 180 LASL 183 (303)
Q Consensus 180 la~~ 183 (303)
+..+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=39.52 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++.+||.+|..+|+|++|+++|++++.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999877644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0052 Score=54.48 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 53 RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+.+.|...+...... .|.-...+...| ..+...|+.++|++.+++++....+. .....
T Consensus 248 ~~~~a~~lL~~~~~~--------yP~s~lfl~~~g----------R~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~ 305 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--------YPNSALFLFFEG----------RLERLKGNLEEAIESFERAIESQSEW----KQLHH 305 (468)
T ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHhcCHHHHHHHHHHhccchhhH----HhHHH
Confidence 445555555554443 455556666777 66699999999999999998643321 12234
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY-------HKAEKLYFRSIEIN 205 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~-------~~A~~~~~~al~~~ 205 (303)
-++..+|.++..+.+|++|..++.+..+.. .-..+...+..|.++. ..|+. ++|.+++.++-...
T Consensus 306 l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~-~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 306 LCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSKAFYAYLAAACLL-MLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHH-hhccchhhhhhHHHHHHHHHHHHHHH
Confidence 568899999999999999999999887632 1223445567788886 89999 67777777666555
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
.
T Consensus 378 ~ 378 (468)
T PF10300_consen 378 Q 378 (468)
T ss_pred h
Confidence 4
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+++++|.+|. .+|++++|+.+|++++++.|
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCc
Confidence 357899999997 99999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.019 Score=47.15 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+-.-| +-|+..++|..|...|.++|+.- .++....+..|.|-|-+....|+|..|+.-+.+|
T Consensus 80 ~Aen~KeeG----------N~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEG----------NEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHh----------HHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666 77899999999999999999852 2344456788999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+. |....+++.=|.++. .+.++++|..+++..+.+..
T Consensus 146 l~~~--------P~h~Ka~~R~Akc~~-eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 146 LKLK--------PTHLKAYIRGAKCLL-ELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhcC--------cchhhhhhhhhHHHH-HHHHHHHHHHHHhhhhhhhH
Confidence 8763 677788899999996 99999999999999887766
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0086 Score=45.59 Aligned_cols=129 Identities=16% Similarity=0.036 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy4339 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYG 136 (303)
Q Consensus 57 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 136 (303)
-++-++.-++-.+... .......++..+| ..|.+.|+.++|++.|.++.+.. .........+.
T Consensus 15 ~~~~Le~elk~~~~n~--~kesir~~~~~l~----------~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l 77 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNL--GKESIRMALEDLA----------DHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHH
Confidence 3344444444444432 2344667788888 77799999999999999988753 23445678888
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
++-.+....+++.....+..++-.+.+. |.+..........-|..+. ..++|.+|-..|-.+....
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l-~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANL-AQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH-HhchHHHHHHHHHccCcCC
Confidence 9999999999999999999999888766 2332333334555667776 7899999999998876544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=50.94 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---cHH-------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGEN---NVQ-------TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
+-++..|+|.+|...|+.|+...+...-.. .|. ....+.|.+.|+...|+|-+++++..+.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~------ 259 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH------ 259 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------
Confidence 777999999999999999999876653222 222 2346789999999999999999999988864
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|....+++..|.+.. ..=+.++|..-+.+++.+.|
T Consensus 260 --~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 260 --HPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred --CCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcCh
Confidence 4777889999999997 88899999999999998877
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=38.11 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. .+|++++|+.++++++.+.|
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCc
Confidence 56889999997 99999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=37.92 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++.++|.+|..+|++++|+.+|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=42.72 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=70.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh--hHH-HHHHHH----HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL--LTS-AHRVKA----LILEEIALDSNELISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~-~~~~la----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 122 (303)
..|+.+.++..+++++.++...+-++.+. +.. ....+- .+...++ ..+...|++++|+..+++++..
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~l~~--- 91 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLA---EALLEAGDYEEALRLLQRALAL--- 91 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH---HHHHHTT-HHHHHHHHHHHHHH---
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCHHHHHHHHHHHHhc---
Confidence 56777888888888888776543322111 111 111111 1111111 6668899999999999999996
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 123 HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 123 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+|..-.++..+-.+|...|+..+|+..|++......+-.|..+..
T Consensus 92 -----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 92 -----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp -----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred -----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455667888999999999999999999999998888766655433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0048 Score=53.31 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=85.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch---------
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY--------- 171 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------- 171 (303)
.+..+...-++..++|+++. |+-+.+|.-||.= ......+|+++++++++..+..++.+..
T Consensus 179 WRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 67788888899999999973 4455666655542 1234688999999999888776554321
Q ss_pred --------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 172 --------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 172 --------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
....+...+|.+.+ ++|+.+||++.++..++..+. .+...++.+|.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCar-klGr~~EAIk~~rdLlke~p~-------------------------~~~l~IrenLi 302 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCAR-KLGRLREAIKMFRDLLKEFPN-------------------------LDNLNIRENLI 302 (539)
T ss_pred hhhccccchhhhhHHHHHHHHH-HhCChHHHHHHHHHHHhhCCc-------------------------cchhhHHHHHH
Confidence 12345678999998 999999999999999887661 12334566666
Q ss_pred HHHHhhhcHHHHHHH
Q psy4339 244 HVYECLENFEKMTEF 258 (303)
Q Consensus 244 ~~~~~~g~~~~A~~~ 258 (303)
.++...+.+.++...
T Consensus 303 e~LLelq~Yad~q~l 317 (539)
T PF04184_consen 303 EALLELQAYADVQAL 317 (539)
T ss_pred HHHHhcCCHHHHHHH
Confidence 666666666665553
|
The molecular function of this protein is uncertain. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.016 Score=51.71 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
+..|.+|+....-...... ....+..+|..| ...|+.+.|...|++|...- -+.-.+++.++.+-|
T Consensus 367 i~tyteAv~~vdP~ka~Gs--~~~Lw~~faklY----e~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~wa---- 432 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGS--PGTLWVEFAKLY----ENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWA---- 432 (835)
T ss_pred HHHHHHHHHccCcccCCCC--hhhHHHHHHHHH----HhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHH----
Confidence 4455555544321111222 345777788544 79999999999999998761 122234566666666
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH----hhCCCcHH------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLK----HFGENNVQ------TAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..-.+..+++.|+.+.++|...=.. ......|. ...++...+......|-++.....|++.+++
T Consensus 433 ------emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 433 ------EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred ------HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5558889999999999998865221 11122222 2234556666667777778888888888776
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh--------hhh---------hhhHHH
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY--------SGL---------EYHYRD 224 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~l---------~~~~~a 224 (303)
. ..+..+..|.|..+. .-.-+++|...|++.+.+++ -|.+...+ .+. ..+.+|
T Consensus 507 r--------iaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 507 R--------IATPQIIINYAMFLE-EHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred h--------cCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5 223345678888887 77788999999999999887 22111111 111 123355
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++...+.+ .-..+...|..-..-|--..|++.++.+
T Consensus 577 L~~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 577 LDGCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HhcCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55443222 2234555666767778888888855444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.013 Score=44.53 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
++-++.-++-.+... ....+..++..+|..|.+.|+.++|++.|.++.+.. .........+.++-.+.. ..|
T Consensus 16 ~~~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i-~~~ 87 (177)
T PF10602_consen 16 LEKLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAI-FFG 87 (177)
T ss_pred HHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHH-HhC
Confidence 333444444444332 344667789999999999999999999999987643 333456777888888886 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++.....+..++-.... . +.+..........-|..+...++|.+|.+ +.+..
T Consensus 88 d~~~v~~~i~ka~~~~~-------------------~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 88 DWSHVEKYIEKAESLIE-------------------K--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred CHHHHHHHHHHHHHHHh-------------------c--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 99999999999988776 2 11111122233345566667899999988 54443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.+||.+|. .+|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 4789999998 99999999999999887765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.041 Score=45.36 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhh--CCcchhh--
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNL--LPENHLL-- 78 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~~~-- 78 (303)
+..-++-|+.++.++-.......+......+..+++.|...+ ..+ ++++|..++++|.++++.. ....+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~----~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL----SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH----HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 345678899999999887652222233457889999998885 788 9999999999999997551 1122222
Q ss_pred --hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 79 --LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 79 --~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
...++..++ .+|...+.++...+ ..++++..+... +++|.+.. ..+- +....++.+++.+.+.
T Consensus 81 elr~~iL~~La----------~~~l~~~~~~~~~k-a~~~l~~l~~e~-~~~~~~~~--L~l~-il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 81 ELRLSILRLLA----------NAYLEWDTYESVEK-ALNALRLLESEY-GNKPEVFL--LKLE-ILLKSFDEEEYEEILM 145 (278)
T ss_pred HHHHHHHHHHH----------HHHHcCCChHHHHH-HHHHHHHHHHhC-CCCcHHHH--HHHH-HHhccCChhHHHHHHH
Confidence 455666666 66677666653333 444444444332 33343321 1121 2222667777777776
Q ss_pred HHHHH
Q psy4339 157 KAIAI 161 (303)
Q Consensus 157 ~al~~ 161 (303)
+.+..
T Consensus 146 ~mi~~ 150 (278)
T PF08631_consen 146 RMIRS 150 (278)
T ss_pred HHHHh
Confidence 66653
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.031 Score=43.68 Aligned_cols=165 Identities=23% Similarity=0.177 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
.......+..+ ...+++..+...+...... ...+.....+...+ ..+...+++..+...+
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 59 AGLLLLLALAL----LKLGRLEEALELLEKALEL------ELLPNLAEALLNLG----------LLLEALGKYEEALELL 118 (291)
T ss_pred hHHHHHHHHHH----HHcccHHHHHHHHHHHHhh------hhccchHHHHHHHH----------HHHHHHhhHHHHHHHH
Confidence 34555555444 5788888888888877654 12334455566666 5557777788888888
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGR-LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
.+++..... + .......+. ++...|++++|...+.+++... +............+..+. ..++++
T Consensus 119 ~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (291)
T COG0457 119 EKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLE-ALGRYE 184 (291)
T ss_pred HHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHH-HhcCHH
Confidence 877774221 1 112223333 8889999999999999985521 101234445556666675 889999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|+..+.+++...+ . .......++..+...+++.+|....
T Consensus 185 ~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 185 EALELLEKALKLNP---------------------------DDDAEALLNLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HHHHHHHHHHhhCc---------------------------ccchHHHHHhhHHHHHcccHHHHHHHH
Confidence 99999999988777 2 4556788899999999999998844
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.07 Score=46.15 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=90.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
.+.++.+.|...|++-+-. ||.+ ..+...|.+-...|+..-|...|++|++.. .+.......+...
T Consensus 185 lRykeieraR~IYerfV~~--------HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLV--------HPKV-SNWIKYARFEEKHGNVALARSVYERAIEFL-----GDDEEAEILFVAF 250 (677)
T ss_pred HHhhHHHHHHHHHHHHhee--------cccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 5566677777777765543 5544 457788999999999999999999999875 3334555666777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhh--hh-------hhhhhhhhhhHHHH--------hhhccccccHHHHHHhHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLK--LF-------SASYSGLEYHYRDL--------KLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~-------~~~~~~l~~~~~a~--------~~~~~~~~~~~~~~~~la 243 (303)
|..-. .++.++.|..+|+-|+...|... .+ -.-+.+...+..++ +.....+|..-.+++..-
T Consensus 251 A~fEe-~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 251 AEFEE-RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 77776 88899999999999998887421 11 11111111111111 111223444445566666
Q ss_pred HHHHhhhcHHHHHH
Q psy4339 244 HVYECLENFEKMTE 257 (303)
Q Consensus 244 ~~~~~~g~~~~A~~ 257 (303)
.+-...|+.+.-.+
T Consensus 330 rL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 330 RLEESVGDKDRIRE 343 (677)
T ss_pred HHHHhcCCHHHHHH
Confidence 66666777766666
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.11 Score=48.44 Aligned_cols=176 Identities=16% Similarity=-0.003 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.++++-+.++...- .......+.++..+|.+. .-.|++++|..+.+++.++.+.. +..+....+....+
T Consensus 474 ~e~a~~lar~al~~L~---~~~~~~r~~~~sv~~~a~----~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s 544 (894)
T COG2909 474 PEEAEDLARLALVQLP---EAAYRSRIVALSVLGEAA----HIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHHHHHHHHHhcc---cccchhhhhhhhhhhHHH----HHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHH
Confidence 4556666666655422 122234566778888777 58999999999999999998774 11222333444445
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.+...+|+...|.. .++.........+..+.........+.++...-+++.+..-....+++.... .
T Consensus 545 ----------~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~ 611 (894)
T COG2909 545 ----------EILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-T 611 (894)
T ss_pred ----------HHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-c
Confidence 44477883332222 2222221111112223222222233333333334777777777777665432 2
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.......+++.++.+.. ..|++++|...+.+......
T Consensus 612 ~~~~~~~~~~~~LA~l~~-~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 612 PQPLLSRLALSMLAELEF-LRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cchhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhc
Confidence 222223334469999996 99999999999999887766
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00059 Score=36.11 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++..+|.++..+|++++|++++++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0077 Score=47.28 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
...++..-|+-+| ..|+|.+|...|+.|+...+...- +..|.+...-...--++.+++ .++...|+|-++
T Consensus 177 av~~l~q~GN~lf----k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~---QC~L~~~e~yev 249 (329)
T KOG0545|consen 177 AVPVLHQEGNRLF----KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYC---QCLLKKEEYYEV 249 (329)
T ss_pred hhHHHHHhhhhhh----hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHH---HHHhhHHHHHHH
Confidence 4567888898885 999999999999999988776543 333443322222222222222 778999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++.....+.. +|....+|+.-|......-+.++|..-+.+++++.
T Consensus 250 leh~seiL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 250 LEHCSEILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9998888874 56778899999999999999999999999999763
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.015 Score=47.64 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
..+..+-.=|+-| +...+|..|...|.+++..- -.+|+ .+..|.|.| .+....|+|..|+
T Consensus 79 E~Aen~KeeGN~~----fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRA----------Aa~~~l~NyRs~l 139 (390)
T KOG0551|consen 79 EQAENYKEEGNEY----FKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRA----------AAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHHHHHhHHH----HHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHH----------HHHHHHHHHHHHH
Confidence 4778888889877 59999999999999998761 12344 677888988 7778999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.-..+++.+ .|....++..=|.|+..+.++.+|..++++.+.+..
T Consensus 140 ~Dcs~al~~--------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 140 NDCSAALKL--------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHhc--------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999986 566778899999999999999999999998887753
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0058 Score=50.16 Aligned_cols=143 Identities=18% Similarity=0.098 Sum_probs=97.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.|...-+...--.++ +..|+.+.....+++.+... .++.|-...+....+ -.+...|-|++
T Consensus 132 d~PtDlla~kfsh~a~----fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmya----------FgL~E~g~y~d 193 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAH----FYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYA----------FGLEECGIYDD 193 (491)
T ss_pred hCchhhhhhhhhhhHH----HhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHH----------hhHHHhccchh
Confidence 4454443443333334 46777777777777655432 234454455555556 44578999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|++..++++++ ++....+...++.++...|++.++.++..+.-...+.. .......|...|..+. .-
T Consensus 194 AEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~i-E~ 260 (491)
T KOG2610|consen 194 AEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHI-EG 260 (491)
T ss_pred HHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhh-cc
Confidence 99999999997 34445667788999999999999999998876655421 1223334556778887 78
Q ss_pred cCHHHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSI 202 (303)
Q Consensus 189 g~~~~A~~~~~~al 202 (303)
+.|+.|++.|.+-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00043 Score=39.30 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.++..+|.+|..+|++++|++.|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 357889999999999999999999999874 444455666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00064 Score=38.56 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.+|. .+|++++|+..|+++++..|
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 35788999998 99999999999999999888
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=39.68 Aligned_cols=80 Identities=18% Similarity=0.070 Sum_probs=58.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..|+|.+|.+.+.+..+.......... .....+..++| ..+...|++++|+..+++|+++.++. .|.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA----------~~~~~~G~~~~A~~~l~eAi~~Are~--~D~ 77 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLA----------ELHRRFGHYEEALQALEEAIRLAREN--GDR 77 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHHHHHH--CCH
Confidence 789999999999999998776433221 12455666777 66689999999999999999999876 444
Q ss_pred HHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRL 141 (303)
Q Consensus 129 ~~~~~~~~~la~~ 141 (303)
.....++..+..+
T Consensus 78 ~~l~~al~~~~~l 90 (94)
T PF12862_consen 78 RCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.021 Score=41.99 Aligned_cols=97 Identities=16% Similarity=0.040 Sum_probs=70.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCC--------------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGEN--------------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
...|+.+.+...+++++.++.-..-++ ......+...++..+...|++++|+..+++++.+.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---- 92 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD---- 92 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----
Confidence 445677788888888887764321111 11234566778889999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|..-.++..+-.+|. ..|+..+|+..|++......
T Consensus 93 ----P~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 93 ----PYDEEAYRLLMRALA-AQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp ----TT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 666678889999997 99999999999999988776
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00021 Score=37.95 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAE 152 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 152 (303)
|++|+++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777875 5777889999999999999999986
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0009 Score=35.43 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.+|. .+|++++|+.+|++++++.|
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 46889999998 99999999999999999877
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00027 Score=37.58 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.6
Q ss_pred cHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 234 GLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....+++++|.+|...|++++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 677889999999999999999863
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=35.10 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++..+|.+|..+|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999999875
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.078 Score=45.20 Aligned_cols=147 Identities=15% Similarity=0.031 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFG--SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 13 ~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
...+..+.++..++. ......+..+...+.+. +..|+++.|...+.++...... .......+....+
T Consensus 123 ~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a----Rk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~a--- 191 (352)
T PF02259_consen 123 SVWEPILSLRRLVLSLILLPEELAETWLKFAKLA----RKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYA--- 191 (352)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH----HHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHH---
Confidence 344455555555443 12345677888888777 7999999999999987765211 1111223333334
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHH-HHHHh-------------------------hCCCcHHHHHHHHHHHHHHHH
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALV-LSLKH-------------------------FGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~-------------------------~~~~~~~~~~~~~~la~~~~~ 144 (303)
......|+..+|+..++..+. ..... ........+.++..+|.....
T Consensus 192 -------kllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 192 -------KLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred -------HHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 555889999999999988887 32221 011123456677788888877
Q ss_pred h------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 145 M------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 145 ~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
. +..+++...|.+++.+. |....++..+|..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~--------~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLD--------PSWEKAWHSWALFND 303 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhC--------hhHHHHHHHHHHHHH
Confidence 7 88888899999988765 555567777777764
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.13 Score=44.59 Aligned_cols=154 Identities=12% Similarity=0.002 Sum_probs=97.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH---HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY---QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
...|+.+.-.+.|++|+.-..... ......-.+|.-+-.++ ....+.+.+...|+.++++. ++.+-..+.++
T Consensus 333 e~~g~~~~Ire~yErAIanvpp~~-ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiW 407 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIANVPPAS-EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIW 407 (677)
T ss_pred HhcCCHHHHHHHHHHHHccCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHH
Confidence 455778888888888887321100 00011112233333222 34688999999999999874 34455677788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhH---HHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFS---ASYSGLEYHY---RDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~l~~~~---~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
...|..-. ++.+...|...+-.|+-.+|.+..+- ..=..|..+. +--+.+-..+|..+.++...|.+-...|+
T Consensus 408 lmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 408 LMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 88888887 89999999999999998888544221 1112222222 22244455567777777778877777787
Q ss_pred HHHHHHHHH
Q psy4339 252 FEKMTEFTN 260 (303)
Q Consensus 252 ~~~A~~~~~ 260 (303)
.+.|...+.
T Consensus 487 tdRaRaife 495 (677)
T KOG1915|consen 487 TDRARAIFE 495 (677)
T ss_pred HHHHHHHHH
Confidence 777776443
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.077 Score=43.86 Aligned_cols=146 Identities=14% Similarity=-0.096 Sum_probs=93.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|++-+|.....+.++ +.|...-+...--..+..+|+.+.....+++.+.-. ..+.|-...+....
T Consensus 114 ~~~g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMY 181 (491)
T ss_pred hccccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHH
Confidence 556777777777777666 344444444445566677777777777777766432 24455556666677
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhhccc-------cccHHHHHHhHHHHHHhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLFSAS-------YSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~~~~-------~~~~~~~~~~la~~~~~~ 249 (303)
+..+. ..|-|++|++..++++++.+++. ..+..+.--+.+.++++...+. .-....-|...|..+...
T Consensus 182 aFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 182 AFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 77777 88889999998888888888533 2333333334555554322211 112345567788889999
Q ss_pred hcHHHHHHHH
Q psy4339 250 ENFEKMTEFT 259 (303)
Q Consensus 250 g~~~~A~~~~ 259 (303)
+.++.|++.+
T Consensus 261 aeye~aleIy 270 (491)
T KOG2610|consen 261 AEYEKALEIY 270 (491)
T ss_pred cchhHHHHHH
Confidence 9999999944
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.025 Score=45.05 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=79.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
.++.+++-|....++..++.+.. .-..++.++..++ ...+.+.+|.-+|++--+ ..
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~---tLtQLA~awv~la-------------~ggek~qdAfyifeE~s~--------k~ 203 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDA---TLTQLAQAWVKLA-------------TGGEKIQDAFYIFEELSE--------KT 203 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHh-------------ccchhhhhHHHHHHHHhc--------cc
Confidence 47788888888888887773321 0111444444444 555667777777766333 23
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
+....+.+..|.|+..+|+|++|...++.++.-. +....++.|+-.+-. ..|+..++..-+-
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~-~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLAL-HLGKDAEVTERNL 265 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHH-HhCCChHHHHHHH
Confidence 3445678899999999999999999999998643 333455667777766 7898877765443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.023 Score=46.80 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=90.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHh--h
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKH--F 124 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~--~ 124 (303)
..+|+++.|..++.++-...... .++. ..++..++++| ......+ +++.|..++++|.++.... .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G----------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIG----------KSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHH----------HHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 37899999999999998876422 2222 23778888888 6668888 9999999999999997541 1
Q ss_pred CCCc----HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 125 GENN----VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 125 ~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
...+ .....++..++.+|...+.++...+ ..++++..+.-+| ++|.+.. ..+ .+.. +.++.+++.+.+.+
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l-~il~-~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKL-EILL-KSFDEEEYEEILMR 146 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHH-HHHh-ccCChhHHHHHHHH
Confidence 1122 2345778899999999888765444 3444555444433 3343321 122 2222 34566666666666
Q ss_pred HHHhh
Q psy4339 201 SIEIN 205 (303)
Q Consensus 201 al~~~ 205 (303)
.+...
T Consensus 147 mi~~~ 151 (278)
T PF08631_consen 147 MIRSV 151 (278)
T ss_pred HHHhc
Confidence 65543
|
It is also involved in sporulation []. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.097 Score=42.00 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
...+.+--..+|+..++..+.. .+...+..+...+| ..|...++|.+-...+++.-..++..-|.++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLg----------kl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLG----------KLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHh----------hhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 3445555566777777766654 33333555666677 67799999999888888777766655444432
Q ss_pred ----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 130 ----QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS-VGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 130 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
....+|..--..|..+++-.+-..+|++++.+...+ .||.+..+ --.=|..+. +.|++++|..-|=+|.+-
T Consensus 185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHl-reg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCcccc-ccchHHHHHhHHHHHHhc
Confidence 345666666778888888888888999999886443 34554433 334467776 899999999988888876
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
..
T Consensus 261 YD 262 (440)
T KOG1464|consen 261 YD 262 (440)
T ss_pred cc
Confidence 65
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.083 Score=48.22 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred HHHHhhhhHHHHHHHHHH------HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---cCC
Q psy4339 98 NELISVQFYKEAELLHQN------ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV---LGK 168 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 168 (303)
.+|....++++|+++|++ |+++.+-. -+..+...-..-|.-+...|+++-|+.+|-+|-.+.+.+ .|.
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfa---fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 777888899999998876 44443322 122333333455777788888888888886553322110 110
Q ss_pred -C------------chHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH----hhhcc
Q psy4339 169 -D------------DYEVG-LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL----KLFSA 230 (303)
Q Consensus 169 -~------------~~~~~-~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~----~~~~~ 230 (303)
. +..+. ..+-.++.-|. ..|+|+-|.++|.++-.... -...|..-+.+..|+ +..++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhya-n~~dfe~ae~lf~e~~~~~d----ai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYA-NKGDFEIAEELFTEADLFKD----AIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhc-cchhHHHHHHHHHhcchhHH----HHHHHhccccHHHHHHHHHHhcCc
Confidence 0 01111 12345677776 88888888888866432111 111222222333332 22232
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
. .+...|..-+.-....|++.+|..
T Consensus 821 e--~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 821 E--ATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred h--hHHHHHHHhHHhHHhhcchhhhhh
Confidence 2 344455566666667777777665
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.077 Score=51.68 Aligned_cols=160 Identities=18% Similarity=0.070 Sum_probs=113.2
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-++.|.++.++||....-.-.+.--....++.||-+.| |.-+.-.+.|++|.+.+. | ..++..|
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd-------~--~~V~~~L 1536 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCD-------A--YTVHLKL 1536 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcc-------h--HHHHHHH
Confidence 35677778888876641000111223455666666433 666777788888877743 2 2555666
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
. .+|..-+.+++|.++++..++-+. +....|...|..+..+++-+.|...+.+|+....+
T Consensus 1537 ~----------~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-- 1596 (1710)
T KOG1070|consen 1537 L----------GIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-- 1596 (1710)
T ss_pred H----------HHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--
Confidence 6 667889999999999999888653 23456888999999999999999999999987633
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.+........|.+- |+.|+.+.+..+|+-.+...|.
T Consensus 1597 ----~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1597 ----QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred ----hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhhCcc
Confidence 22344556677777 5899999999999998887773
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.086 Score=42.19 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhCCcc--hh-hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPEN--HL-LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+=...+...+.+....+-+. ++ .....+-..|..|.-++-.........-.+.|...|++|+.+.++.+++.+|...
T Consensus 89 EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rL 168 (236)
T PF00244_consen 89 ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRL 168 (236)
T ss_dssp HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHH
Confidence 34455566666665543322 12 2344445566555544422211122334588999999999999998889999988
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQS-MQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 133 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~ 163 (303)
....|.+.+|+. +|+.++|....++|++-.-
T Consensus 169 gl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 169 GLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 888899988855 8999999999999877553
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.13 Score=43.88 Aligned_cols=151 Identities=12% Similarity=0.045 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 33 VAIAEDELAYALYVNEYS---SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
...+....|.++ .. .|+.++|+..+..++.. .......++..+|.+|..+-.. ..+......++|
T Consensus 178 ~~~i~~~yafAL----nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~-s~~~d~~~ldkA 245 (374)
T PF13281_consen 178 QHNIKFQYAFAL----NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLE-SNFTDRESLDKA 245 (374)
T ss_pred chHHHHHHHHHH----hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHH-cCccchHHHHHH
Confidence 344555666556 35 79999999999887544 2333456788889888644322 111234458888
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH-HHHHHhcCC----CchHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI-AIKEKVLGK----DDYEVGLSVGHLASLY 184 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~----~~~~~~~~~~~la~~~ 184 (303)
+.+|+++.++.. .. ..=.|++.++...|.-.+...-.++.. .+. ...|. .....-..+..++.+.
T Consensus 246 i~~Y~kgFe~~~--------~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~ 315 (374)
T PF13281_consen 246 IEWYRKGFEIEP--------DY-YSGINAATLLMLAGHDFETSEELRKIGVKLS-SLLGRKGSLEKMQDYWDVATLLEAS 315 (374)
T ss_pred HHHHHHHHcCCc--------cc-cchHHHHHHHHHcCCcccchHHHHHHHHHHH-HHHHhhccccccccHHHHHHHHHHH
Confidence 888988888631 11 122366777777776444433333332 221 11111 1112223345666777
Q ss_pred HHhhcCHHHHHHHHHHHHHhhh
Q psy4339 185 NYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. -.|++++|+..+++++...+
T Consensus 316 v-L~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 316 V-LAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred H-HcCCHHHHHHHHHHHhhcCC
Confidence 6 78999999999999998866
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0049 Score=53.07 Aligned_cols=129 Identities=13% Similarity=-0.041 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--LTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
+.++.-.+..+| ..|+|.+|.+.+... .+.+...+...|. .....+|+| .+++..|.|.-+..
T Consensus 240 ~~~l~LKsq~eY----~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlG----------cIh~~~~~y~~~~~ 304 (696)
T KOG2471|consen 240 SMALLLKSQLEY----AHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLG----------CIHYQLGCYQASSV 304 (696)
T ss_pred cHHHHHHHHHHH----HhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcc----------eEeeehhhHHHHHH
Confidence 345555565564 789999998887643 2222222222344 334567899 66699999999999
Q ss_pred HHHHHHH-HHHHhhCCC---------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 112 LHQNALV-LSLKHFGEN---------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 112 ~~~~al~-~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+|.+|++ ...+....- ......+.+|.|..|...|++-.|.++|.++...+.. .| ..|..+|
T Consensus 305 ~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlA 376 (696)
T KOG2471|consen 305 LFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLA 376 (696)
T ss_pred HHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHH
Confidence 9999996 444432211 1124567889999999999999999999999998743 24 3466676
Q ss_pred HHHH
Q psy4339 182 SLYN 185 (303)
Q Consensus 182 ~~~~ 185 (303)
.++.
T Consensus 377 EcCi 380 (696)
T KOG2471|consen 377 ECCI 380 (696)
T ss_pred HHHH
Confidence 6664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.35 Score=41.28 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+.+..++--+| +...+|+.-+.+.+..-.+ ...+-+....+....|..+. ---..|+.++|+..+
T Consensus 141 ~div~~lllSy----RdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALn-------Rrn~~gdre~Al~il 205 (374)
T PF13281_consen 141 PDIVINLLLSY----RDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALN-------RRNKPGDREKALQIL 205 (374)
T ss_pred hhHHHHHHHHh----hhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHh-------hcccCCCHHHHHHHH
Confidence 34555555344 7888998888777653332 11122233444555564431 112289999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
..++.. ..+....++..+|.+|-.+ ...++|+..|.++.++. +. ...-.|++.++
T Consensus 206 ~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL 269 (374)
T PF13281_consen 206 LPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLL 269 (374)
T ss_pred HHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHH
Confidence 887653 2233445677888887654 23455555555555442 21 12234677777
Q ss_pred HHhhcCHHHHHHHHHHHH-HhhhhhhhhhhhhhhhhhhHHHHhhhccc----cccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 185 NYHMLEYHKAEKLYFRSI-EINDNLKLFSASYSGLEYHYRDLKLFSAS----YSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~l~~~~~a~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
. ..|.-.+...-.++.. .+.. ..+.. ....-+..-.++.+....|++++|....
T Consensus 270 ~-~~g~~~~~~~el~~i~~~l~~--------------------llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 270 M-LAGHDFETSEELRKIGVKLSS--------------------LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred H-HcCCcccchHHHHHHHHHHHH--------------------HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6 6776544443344433 2221 11111 1122234456777778899999999865
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 329 e~~ 331 (374)
T PF13281_consen 329 EKA 331 (374)
T ss_pred HHH
Confidence 554
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.38 Score=43.87 Aligned_cols=142 Identities=18% Similarity=0.079 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhh-hhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHH
Q psy4339 33 VAIAEDELAYALYVN-EYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAE 110 (303)
Q Consensus 33 ~~~~~~~la~~~y~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~ 110 (303)
...+...+|.+++.- +....|.+.|+.+++.+.+-+++..... ...+.+.+|.+|..-. .... +++.|.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~------~~~~~d~~~A~ 313 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL------GVEKIDYEKAL 313 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC------CCccccHHHHH
Confidence 446777888777521 2345699999999999988422211111 2345667774442111 0122 788899
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
.++.++-+. ++ ..+...+|.++..-. ++..|.++|..|... ....+.+.+|.+|.
T Consensus 314 ~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~-- 371 (552)
T KOG1550|consen 314 KLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYE-- 371 (552)
T ss_pred HHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHH--
Confidence 999988874 22 235678888887755 578999999988753 12456788998884
Q ss_pred hc-----CHHHHHHHHHHHHHhh
Q psy4339 188 ML-----EYHKAEKLYFRSIEIN 205 (303)
Q Consensus 188 ~g-----~~~~A~~~~~~al~~~ 205 (303)
.| +...|..+++++-+..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc
Confidence 55 6889999999987654
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.009 Score=51.49 Aligned_cols=111 Identities=12% Similarity=-0.025 Sum_probs=76.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHhcCCC-----
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQT--AKHYGNIGRLYQSMQKFDEAERMQLKAIA-IKEKVLGKD----- 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~----- 169 (303)
..++..|++.+|.+.+..+- +.+...+...|.. ...++|||.+++.+|.|.-+..+|.+|++ .+.+...+-
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44466666666666554321 1111112223333 34568999999999999999999999996 443331111
Q ss_pred ----chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 170 ----DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 170 ----~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
......+++|.|..|. ..|+.-.|.++|.++...+..+|.
T Consensus 327 ~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcH
Confidence 1123467899999998 999999999999999999986664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.22 Score=37.95 Aligned_cols=131 Identities=16% Similarity=0.003 Sum_probs=87.1
Q ss_pred HHHHhhhh---HHHHHHHHHHHHHHHHHhhC-----------CC--cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 98 NELISVQF---YKEAELLHQNALVLSLKHFG-----------EN--NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 98 ~~~~~~~~---~~~A~~~~~~al~~~~~~~~-----------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..|+...+ ..+|-..|++++........ .+ ..--..+-..+|..+...|++++|+..++.++..
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~ 118 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ 118 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 44444443 34677777777765432100 01 0111123346788889999999999999998854
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
. .+......+-.+||.+.. .+|++|+|...+..... +...+.....
T Consensus 119 t-----~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~----------------------------~~w~~~~~el 164 (207)
T COG2976 119 T-----KDENLKALAALRLARVQL-QQKKADAALKTLDTIKE----------------------------ESWAAIVAEL 164 (207)
T ss_pred c-----hhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccc----------------------------ccHHHHHHHH
Confidence 2 233444556678999997 99999999988765321 1134445667
Q ss_pred HHHHHHhhhcHHHHHH-HHHHH
Q psy4339 242 LIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.|+++..+|+.++|.. |.+++
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHH
Confidence 8999999999999999 66666
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.31 Score=45.46 Aligned_cols=124 Identities=20% Similarity=0.112 Sum_probs=78.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|.+|+....+.++. +|....+...-| -+..++|+.++|..++ +++... +++
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLka----------Lsl~r~gk~~ea~~~L-e~~~~~----~~~-- 75 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKA----------LSLFRLGKGDEALKLL-EALYGL----KGT-- 75 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHHhcCchhHHHHH-hhhccC----CCC--
Confidence 568888888888877665 565555555556 4448999999999444 444431 122
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
...++..+-.||..++++++|..+|++++.-+ |. -..+..+=.+|. +.+.|.+=...--+..+..|+.|
T Consensus 76 -D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayv-R~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 76 -DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYV-REKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred -chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCccc
Confidence 34567788999999999999999999998653 33 233444445555 55655543333333333445433
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.53 Score=43.00 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHH------HHHHHhh------------C--CcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 51 SGRFTESRRHAEKA------IQTFKNL------------L--PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 51 ~g~~~~A~~~~~~a------l~~~~~~------------~--~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
-|+|++|++.|-.+ +++..+. . +.++.....+..++| ..+.....+++|.
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig----------~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIG----------ETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 48888888877543 2222211 1 122333555666666 5556666777777
Q ss_pred HHHHH
Q psy4339 111 LLHQN 115 (303)
Q Consensus 111 ~~~~~ 115 (303)
++|..
T Consensus 817 ~yY~~ 821 (1189)
T KOG2041|consen 817 KYYSY 821 (1189)
T ss_pred HHHHh
Confidence 66655
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0074 Score=31.41 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++.+|.++. ..|++++|+..+++.++..|
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCc
Confidence 5789999997 99999999999999998877
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.3 Score=37.56 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=60.3
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEY 220 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~ 220 (303)
.+..+..-++|..-|.++- |....+.+.....||..|. ..+.++|+.++.+++++..
T Consensus 115 y~Wsr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~-------------- 171 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSN-------------- 171 (203)
T ss_pred HHhhccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcC--------------
Confidence 3444444467776665542 2333455677889998884 7889999999999998877
Q ss_pred hHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 221 HYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++.-.+.++..|+.++..+|++++|--
T Consensus 172 ---------~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 172 ---------PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 1212345668899999999999998853
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.23 Score=40.98 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=78.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
....+.+..+.|..+|.+|+.. ......+|...|.+-.. .++.+.|...|+.+++.+ +..+ ..
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~---~~ 72 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP---DF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H---HH
T ss_pred HHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH---HH
Confidence 3336677788999999998741 22233567778888666 566666999999999876 2333 44
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+......+. ..|+.+.|..+|++++...+ . .. ....++......-...|+.+...
T Consensus 73 ~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~-------------------~---~~--~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 73 WLEYLDFLI-KLNDINNARALFERAISSLP-------------------K---EK--QSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHCCTSS-------------------C---HH--HCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHH-HhCcHHHHHHHHHHHHHhcC-------------------c---hh--HHHHHHHHHHHHHHHcCCHHHHH
Confidence 455556676 89999999999999997655 1 00 02234555555556667766666
Q ss_pred HHHH
Q psy4339 257 EFTN 260 (303)
Q Consensus 257 ~~~~ 260 (303)
+..+
T Consensus 128 ~v~~ 131 (280)
T PF05843_consen 128 KVEK 131 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=33.05 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-|.-++..++.++|+..++++++.. .+.++...++..+..+|. ..|+|.+++.+..+=+.+..
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444567788899999999999865 456778888999999998 99999999999888887776
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.43 Score=38.22 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhCCcch---hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENH---LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+=...+...+.+....+-+.. ......+-..|..|.-++.....-....-.+.|.+.|++|+++....+.+.+|...
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 344455566666655443322 22344445556554433311100012223568999999999998877788889888
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 133 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
....|.+.+|+. +++.++|..+.++|.+-
T Consensus 171 gLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 171 GLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888776 59999999888777654
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.55 Score=39.03 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.+..++|..+ ...|+.++--+.....-..+... ..+..+.....+-. ......+..+.-+..+.
T Consensus 49 ~~Ilel~~ll----~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd---------~~~~~~~~~~~~i~l~~ 112 (411)
T KOG1463|consen 49 QSILELGDLL----AKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVD---------MFLKIDDGTGDQIELCT 112 (411)
T ss_pred HHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH---------HHccCCCCcchHHHHHH
Confidence 5677888766 68999887776666655554432 11222222222211 11233455567777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.+++...+. ...-.....-..+...|...++|.+|+......+.-.++. .+.+....++..-+.+|. ...+..+|
T Consensus 113 ~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~-~l~Nl~Ka 187 (411)
T KOG1463|consen 113 ECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYH-ALRNLPKA 187 (411)
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHH-HHhcchhH
Confidence 877776542 0111222344578999999999999999999888877775 455566667777788885 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
...+..|-....
T Consensus 188 kasLTsART~An 199 (411)
T KOG1463|consen 188 KASLTSARTTAN 199 (411)
T ss_pred HHHHHHHHHhhc
Confidence 988887765544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++.++|.++...|++++|...|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999998754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.24 E-value=1 Score=41.81 Aligned_cols=165 Identities=15% Similarity=0.030 Sum_probs=104.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..+.-|++++..|-.....+ .++....-|+ +-..-|+.+++-+++- .......-+.+...
T Consensus 5 ~ll~lAeey~~~A~~~~~~~---~~~~~l~~Y~-------------kLI~~ai~CL~~~~~~----~~l~p~~ea~~~l~ 64 (608)
T PF10345_consen 5 LLLSLAEEYLEKAHSLATKV---KSEEQLKQYY-------------KLIATAIKCLEAVLKQ----FKLSPRQEARVRLR 64 (608)
T ss_pred HHHHHHHHHHHHhHHHHHhc---CChhhHHHHH-------------HHHHHHHHHHHHHhcc----CCCCHHHHHHHHHH
Confidence 45666777777777665544 2222322222 2234566666655541 12222336777888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+|.++. ....+++.|+.++.+++.+.++. .-......+..-++.++.+.+... |...++++++..+..
T Consensus 65 la~iL~---------~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 65 LASILL---------EETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHH---------HHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 885542 47789999999999999987651 112223455667899999988887 999999999988662
Q ss_pred cCCCchHHHHHHHHH-HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 166 LGKDDYEVGLSVGHL-ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 ~~~~~~~~~~~~~~l-a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ +......+..+ ..... ..+++..|.+.++.......
T Consensus 133 -~--~~~w~~~frll~~~l~~-~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 133 -G--HSAWYYAFRLLKIQLAL-QHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred -C--chhHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHhh
Confidence 1 22222333333 33332 34799999999999988775
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.097 Score=43.19 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=84.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHH-HHhhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNE-LISVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
...+..+.|...|.+|.+. ......+|...| .. |...++.+.|..+|+.+++.+. .
T Consensus 12 ~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A----------~~E~~~~~d~~~A~~Ife~glk~f~-----~ 68 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRARKD--------KRCTYHVYVAYA----------LMEYYCNKDPKRARKIFERGLKKFP-----S 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHH----------HHHHHTCS-HHHHHHHHHHHHHHHT-----T
T ss_pred HHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHH----------HHHHHhCCCHHHHHHHHHHHHHHCC-----C
Confidence 4566688899999988621 112234454455 33 2335677779999999998753 2
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++ ..+......+...|+.+.|..+|++++... +.......+|......=. ..|+.+......+++.+..++
T Consensus 69 ~~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DP---DFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTT
T ss_pred CH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhh
Confidence 33 345555678889999999999999998652 111213345666666665 889999999999999998885
Q ss_pred hh
Q psy4339 208 LK 209 (303)
Q Consensus 208 ~~ 209 (303)
.+
T Consensus 140 ~~ 141 (280)
T PF05843_consen 140 DN 141 (280)
T ss_dssp S-
T ss_pred hh
Confidence 43
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=30.96 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++..||.+-...++|++|+.-|++++++.++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.22 Score=34.70 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----HH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY-------EVGLSVGHLASLYNYHMLEYHKAEKLYFRS----IE 203 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~g~~~~A~~~~~~a----l~ 203 (303)
+..+|......+++-.|+-+|++|+.+.++....+.. -...+..|||..++ .+|+.+-.+.|++-| +.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR-~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR-SQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH-HcCChHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999999998876322211 12345789999998 999999999998754 45
Q ss_pred hhhhhh--hhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 204 INDNLK--LFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 204 ~~~~~~--~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+.|+.| ........|++...|+-.+-+.||.
T Consensus 83 LiPQCp~~~C~afi~sLGCCk~ALl~F~KRHPN 115 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCKKALLDFMKRHPN 115 (140)
T ss_pred hccCCCCcchHHHHHhhhccHHHHHHHHHhCCC
Confidence 555555 3555577888888887666666665
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.016 Score=49.83 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=76.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..-+.|+.|+..|.+|+++ +|..+..+.+.+ ..+...+++..|+.-+.+|++. .
T Consensus 15 l~~~~fd~avdlysKaI~l--------dpnca~~~anRa----------~a~lK~e~~~~Al~Da~kaie~--------d 68 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRA----------LAHLKVESFGGALHDALKAIEL--------D 68 (476)
T ss_pred cccchHHHHHHHHHHHHhc--------CCcceeeechhh----------hhheeechhhhHHHHHHhhhhc--------C
Confidence 4789999999999999998 666667777777 6668999999999999999995 5
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|....+|..-|..+...+++.+|...|+....+.
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 8888999999999999999999999999887664
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0074 Score=51.89 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=85.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......+.|+.|+..|.+|+++ +|.-+..+.+-+..+...++|..|+.-+.+|++.. |....+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y 75 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAY 75 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhhee
Confidence 4557788999999999999996 45556677788899999999999999999999753 8888999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
...|.++. ..+++.+|...|+....+.|+.|.+..
T Consensus 76 ~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 76 VRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred eeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 99999998 999999999999999999997765433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.77 Score=37.35 Aligned_cols=172 Identities=9% Similarity=0.026 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCC----CcH---HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGS----ENL---QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 14 ~~~~al~~~~~~~~~----~~~---~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-+++|+..++.+++. +.. +.-.+..+++..| ...|++..--+.....-+..... ..|....+...+
T Consensus 18 ~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~ly----v~~g~~~~l~~~i~~sre~m~~f---tk~k~~KiirtL 90 (421)
T COG5159 18 DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLY----VSKGDYCSLGDTITSSREAMEDF---TKPKITKIIRTL 90 (421)
T ss_pred hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHH----HhcCCcchHHHHHHhhHHHHHHh---cchhHHHHHHHH
Confidence 467788888887765 211 2335677888655 68999887666666665555443 223333333222
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
-. ..-.....++.-+..+...++...+. .........-..+...+...|+|.+|+....-.+.-.++.
T Consensus 91 ie---------kf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~- 158 (421)
T COG5159 91 IE---------KFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY- 158 (421)
T ss_pred HH---------hcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-
Confidence 21 11144566777788888887765432 0111122334578889999999999999998888777775
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.+.....+..-+.+|. ...+..++...+..|-..+.
T Consensus 159 -DDK~~Li~vhllESKvyh-~irnv~KskaSLTaArt~An 196 (421)
T COG5159 159 -DDKINLITVHLLESKVYH-EIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred -cCccceeehhhhhHHHHH-HHHhhhhhhhHHHHHHHHhh
Confidence 566777777888889996 99999999888877765554
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.36 Score=39.04 Aligned_cols=92 Identities=11% Similarity=-0.082 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
.-...++.+.+|++.++.. ............+|..|...|++++|+++++.+...+++- +.......++..+..++
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH
Confidence 4446688888888888764 2233445666799999999999999999999998777653 34455667788889999
Q ss_pred HHhhcCHHHHHHHHHHH
Q psy4339 185 NYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~a 201 (303)
. ..|+.++.+.+.-+.
T Consensus 229 ~-~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 229 K-RLGDVEDYLTTSLEL 244 (247)
T ss_pred H-HhCCHHHHHHHHHHH
Confidence 6 999988877765443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.31 Score=43.89 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
....+..+|..|+++|..++...... ..+...+....+++.||..+.+.|+|.+++++|-+.. |......
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--------~~~~l~q 431 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--------RQSPLCQ 431 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------cccHHHH
Confidence 55588899999999999999875321 2234557788899999999999999999999997653 2223333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+-.+.. ..|+-++|..+......+..
T Consensus 432 ~~~~~~~~-~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 432 LLMLQSFL-AEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHH-HhcchHHHHHHHHHHHhhhc
Confidence 44445554 67889999998887776554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.2 Score=37.91 Aligned_cols=104 Identities=10% Similarity=-0.007 Sum_probs=74.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHh-----------
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA-IKEKV----------- 165 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~----------- 165 (303)
...+..|+++.|...+.++...... .......+...-+.+....|+..+|+..++..+. .....
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 6668999999999999887775321 1111334556779999999999999999988887 22221
Q ss_pred --------------cCCCchHHHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHhhh
Q psy4339 166 --------------LGKDDYEVGLSVGHLASLYNYHM------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 --------------~~~~~~~~~~~~~~la~~~~~~~------g~~~~A~~~~~~al~~~~ 206 (303)
........+.++..+|.... .. +..+++...|+++.++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhCh
Confidence 01112345667777888776 77 888889999999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.03 Score=28.23 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.++.++|.++..++++++|..++++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35789999999999999999999999865
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0019 Score=53.03 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=76.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|.++.|++.|..++.+ +|..+..+..-|.++..+++...|++-+..|+.+- |+.+..+-..
T Consensus 125 ln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------~Dsa~~ykfr 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------PDSAKGYKFR 188 (377)
T ss_pred hcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC--------cccccccchh
Confidence 6688899999999998885 56677889999999999999999999999998763 6666677778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.+.+ .+|++++|...+..+.++.-
T Consensus 189 g~A~r-llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 189 GYAER-LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHH-HhhchHHHHHHHHHHHhccc
Confidence 88888 89999999999999987654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.93 Score=41.50 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred HHHHHHhhcHHHHHHHHHHH------HHHHHHh------------c--CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 139 GRLYQSMQKFDEAERMQLKA------IAIKEKV------------L--GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~a------l~~~~~~------------~--~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
|.+-.--|+|++|++.|-.+ +++..+. . +.++...-.++.++|..+. .+..+++|.++|
T Consensus 741 aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa-~~~~We~A~~yY 819 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA-EMMEWEEAAKYY 819 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444457777777777432 3332221 1 2334455678999999996 999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 199 FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 199 ~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++-.. .....+++.++.+.... .+...-|+....+-.+|.++...|--++|.+
T Consensus 820 ~~~~~~----e~~~ecly~le~f~~LE-~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 820 SYCGDT----ENQIECLYRLELFGELE-VLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred Hhccch----HhHHHHHHHHHhhhhHH-HHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 886533 34556666665443221 1111222222234455666666666555555
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.029 Score=28.33 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. ..|++++|+.++++++++.+
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCC
Confidence 35788999997 99999999999999998765
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.04 Score=48.81 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=83.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
..+|+...|..++..|+-.. +........+||.+...-|-...|-.++.+++.+.. ..| ..++.+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l~~~~~ 682 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---LTFLSL 682 (886)
T ss_pred eecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---hHHHhc
Confidence 67899999999999998752 222234567999999999999999999999998851 123 356789
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEY 220 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~ 220 (303)
|.+|. .+.+.+.|++.+++|++..+++|.+-..+.-+.+
T Consensus 683 g~~~l-~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYL-ALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHH-HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99998 9999999999999999999988866655554443
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.16 Score=47.28 Aligned_cols=90 Identities=16% Similarity=0.033 Sum_probs=68.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...+++.+|+.-..+.++- +|....+...-|.++.++|+.++|..+++.. ... +++ .-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~----~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL----KGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC----CCC---chHHHHHH
Confidence 3578888888888887763 5555666667889999999999999666533 221 222 23456778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
-.+|. .+|++++|..+|++++...|.
T Consensus 84 ~~~y~-d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 84 QNVYR-DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHH-HHhhhhHHHHHHHHHHhhCCc
Confidence 88999 999999999999999998884
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.058 Score=29.24 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP 73 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~ 73 (303)
+++..||.+- ...++|++|+.-|++++++.++.+.
T Consensus 2 dv~~~Lgeis----le~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEIS----LENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHhcC
Confidence 5678888877 6899999999999999999887643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG0508|consensus | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.11 Score=44.88 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC----Ccc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL----PEN--HLLLTSAHRVKALILEEIALDSNELISVQ 104 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~ 104 (303)
....+++.-+|..+- ....+.-.|+.++.++++...... ... .|..+.-+.... ..-....
T Consensus 242 ~~riealEllGat~~---dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~----------~~~~elE 308 (615)
T KOG0508|consen 242 ESRIEALELLGATYV---DKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREV----------NNREELE 308 (615)
T ss_pred hhHHHHHHHhccccc---chhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhc----------CCHHHHH
Confidence 344677778885553 345567789999999998865511 111 111111111111 0000000
Q ss_pred hH-HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 105 FY-KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 105 ~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
.+ ..--++--+++-+.+.++|+.+|++.......|-+|..+|+++..++++.-|+++.++.+.+-+|.+...+...+.+
T Consensus 309 ~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFael 388 (615)
T KOG0508|consen 309 ELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAEL 388 (615)
T ss_pred HHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH
Confidence 01 11112334566777788999999987777778999999999999999999999999998888889999888888888
Q ss_pred HHHhhcC
Q psy4339 184 YNYHMLE 190 (303)
Q Consensus 184 ~~~~~g~ 190 (303)
+.|.+.+
T Consensus 389 FS~mL~d 395 (615)
T KOG0508|consen 389 FSFMLQD 395 (615)
T ss_pred HHHHhhh
Confidence 7654443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.1 Score=30.69 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..++.+|..+. ++|+|++|..+.+.++++.|+++
T Consensus 2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcH
Confidence 35788999995 99999999999999999998443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.81 Score=31.51 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+..|++-+|++..+..+..-.. +......+..-|.++...+ ....+.+-=..++.-+++.+.+.. .-+
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA------~~ten~d~k~~yLl~sve~~s~a~-~Ls 74 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLA------KKTENPDVKFRYLLGSVECFSRAV-ELS 74 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHH------HhccCchHHHHHHHHhHHHHHHHh-ccC
Confidence 4899999999999998876322 2222244555555543333 344455544555555555544432 124
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
|.-+..++.+|.-+....-|+++..-.++++.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 555666777776666666666666666666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.2 Score=36.45 Aligned_cols=146 Identities=15% Similarity=0.050 Sum_probs=86.1
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
+..|.+.....+..-+ .+ ..|+++.|.+-|+..+. +|++ ..+...|+. ..-.+.|.
T Consensus 114 lssDqepLIhlLeAQa-al-----~eG~~~~Ar~kfeAMl~---------dPEt-RllGLRgLy--------leAqr~Ga 169 (531)
T COG3898 114 LSSDQEPLIHLLEAQA-AL-----LEGDYEDARKKFEAMLD---------DPET-RLLGLRGLY--------LEAQRLGA 169 (531)
T ss_pred hhccchHHHHHHHHHH-HH-----hcCchHHHHHHHHHHhc---------ChHH-HHHhHHHHH--------HHHHhccc
Confidence 4456666666666555 23 58999999999886543 3332 111222211 22267899
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE--VGLSVGHLASL 183 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~ 183 (303)
.+.|..|.+.+-... |....+....-...+..|+++.|+++.+...... ..+++-.+ .+..+...+..
T Consensus 170 reaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 170 REAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHH
Confidence 999999999888753 2233333344455677899999999998765532 12222222 12223333333
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 184 YNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 184 ~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.. .-+...|...-.+++++.++
T Consensus 240 ~l--dadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 240 LL--DADPASARDDALEANKLAPD 261 (531)
T ss_pred Hh--cCChHHHHHHHHHHhhcCCc
Confidence 32 34567778888888877773
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.9 Score=35.68 Aligned_cols=154 Identities=19% Similarity=-0.015 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+..+++.+........+ .....++.++..-.....+..+|..+|+.+.+. .......++|.++..-.
T Consensus 57 ~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 57 YAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGR 123 (292)
T ss_pred HHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCC
Confidence 34444444443322222 566677755531112344577888888844332 23456667885542100
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHHhcC
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-------KFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~ 167 (303)
....+..+|..+|++|.+. .++.-..+...+|.+|..-. +...|...|.++....
T Consensus 124 ------gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----- 185 (292)
T COG0790 124 ------GVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----- 185 (292)
T ss_pred ------CcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----
Confidence 1144889999999999884 22221344667888877642 2236777777766532
Q ss_pred CCchHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHh
Q psy4339 168 KDDYEVGLSVGHLASLYNYH---MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~---~g~~~~A~~~~~~al~~ 204 (303)
...+...+|.+|... ..++.+|..+|.++-+.
T Consensus 186 -----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 186 -----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 345678899888522 23789999999998754
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.63 Score=29.79 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
...-|--+| .+.+.++|+..+.++++... +.++...++..+. .+|...|+|.+++.+...=
T Consensus 9 ~ie~GlkLY----~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~----------qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLY----HQNETQQALQKWRKALEKIT-----DREDRFRVLGYLI----------QAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHh----ccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 334444454 78889999999999998732 3444444444444 8889999999999999988
Q ss_pred HHHHHHh
Q psy4339 117 LVLSLKH 123 (303)
Q Consensus 117 l~~~~~~ 123 (303)
+++.++.
T Consensus 70 ~~~A~el 76 (80)
T PF10579_consen 70 LEIAEEL 76 (80)
T ss_pred HHHHHHc
Confidence 8887765
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.59 Score=32.18 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ----KFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...|++-+|+++.++.+....+ +. .....+..-|.++..+. +.+-=..++.-+++-+.+.. .-.|..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~----~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp~~ 77 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGE----DE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSPDS 77 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccC----CC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccChhH
Confidence 4457899999999999999886432 22 11133445566665543 33333333333443333321 123556
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+..++.+|.-+. ...-|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~-s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLG-SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHhcc
Confidence 777777776664 444556666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.24 Score=38.08 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhh
Q psy4339 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDS 97 (303)
Q Consensus 18 al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 97 (303)
|+..+-+.-+....+.++....|| .|| ...+-++|+.++.+++++... ++.....++..|+
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLA-tyY----~krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLa---------- 185 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALA-TYY----TKRDPEKTIQLLLRALELSNP----DDNFNPEILKSLA---------- 185 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHH-HHH----HccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHH----------
Confidence 445555444545556788999999 676 688999999999999998543 2222346666677
Q ss_pred HHHHhhhhHHHHHHH
Q psy4339 98 NELISVQFYKEAELL 112 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~ 112 (303)
.+|..+|+++.|--+
T Consensus 186 s~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 186 SIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHhcchhhhhhh
Confidence 777999999988543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.52 Score=38.45 Aligned_cols=116 Identities=13% Similarity=-0.037 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS 216 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (303)
.-+.-....|++.+|...+..++... |....+...++.+|. ..|+.+.|...+...=.-..+....+ ...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a 208 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHG-LQA 208 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHH-HHH
Confidence 44556678899999999999999875 444667789999998 99999999888765211111111111 222
Q ss_pred hhhhhHHH--------HhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 217 GLEYHYRD--------LKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 217 ~l~~~~~a--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.++.+.++ +..--..+|+...+.+.+|..+...|+.++|.+ ++..+
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23333332 222223467777889999999999999999999 54444
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.29 Score=47.04 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+++...+.|+.|+..|++.-..+ |....--.+.+.+|.....+-.-..--+.+.+|+...++..+ .|...--|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHH
Confidence 56677778888888888766643 122233456777787776654444444677777777777643 34444456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
...|.+|. .+|+++|-++++.-|++-.++||.+...
T Consensus 556 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 556 LGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 77888898 9999999999999999999998854433
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.8 Score=38.48 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
..+|.-|+.+.+.. +.+......++...|.-+ +..|+|++|...|-+++..
T Consensus 347 K~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~L----y~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYL----YGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHccc
Confidence 35677888887764 334445678888888766 4999999999999998865
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3 Score=35.78 Aligned_cols=175 Identities=11% Similarity=-0.049 Sum_probs=108.2
Q ss_pred hHhHHHHHHHHHHHHHH-----HHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc------
Q psy4339 7 LLKNLSLCSQLALKLKQ-----VLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN------ 75 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 75 (303)
.+.++...|..++.... .++ ..+|-.+.++..++.++ ..+|++..|.++.++|+-.++....+.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll-~~~PyHidtLlqls~v~----~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLL-QKNPYHIDTLLQLSEVY----RQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH-HHCCCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34455555555554321 122 34677788999999888 799999999999999998776431110
Q ss_pred ------------hhh---hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy4339 76 ------------HLL---LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGR 140 (303)
Q Consensus 76 ------------~~~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 140 (303)
.+. .-.++.... ....+.|.+..|.++.+-.+.+-. .++| ..+...+=.
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i----------~~L~~RG~~rTAlE~~KlLlsLdp----~~DP--~g~ll~ID~ 147 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYI----------QSLGRRGCWRTALEWCKLLLSLDP----DEDP--LGVLLFIDY 147 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHH----------HHHHhcCcHHHHHHHHHHHHhcCC----CCCc--chhHHHHHH
Confidence 111 111111111 455789999999999988888621 1133 334445555
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH---------------HHHHHHHHHHHHhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY---------------HKAEKLYFRSIEIN 205 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~---------------~~A~~~~~~al~~~ 205 (303)
...+.++|+-=++.++.......+ ..........+.++.++. ..++- ++|...+.+|+...
T Consensus 148 ~ALrs~~y~~Li~~~~~~~~~~~~---~~~~~lPn~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 148 YALRSRQYQWLIDFSESPLAKCYR---NWLSLLPNFAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHhcCCHHHHHHHHHhHhhhhhh---hhhhhCccHHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 566677777666666654432110 000011234567777885 78877 89999999999988
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
|
T Consensus 224 P 224 (360)
T PF04910_consen 224 P 224 (360)
T ss_pred H
Confidence 8
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.3 Score=38.94 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=91.0
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
-++.|..+|+.+.+-+++..... ...+...+|.+|+.-..... ++..|+.+|.++-+. ++ ..+...
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~ 330 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYL 330 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHH
Confidence 35667777777766433222111 23367788877741000122 678889888887665 22 356667
Q ss_pred HHHHHHHHhhhhHHHHhh---hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV---QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKA 158 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 158 (303)
+|.++ ... .++..|.++|..|... . ...++.++|.||.. ..+..+|..++.++
T Consensus 331 lg~~~----------~~g~~~~d~~~A~~yy~~Aa~~-------G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 331 LGVLY----------ETGTKERDYRRAFEYYSLAAKA-------G---HILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHH----------HcCCccccHHHHHHHHHHHHHc-------C---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 77443 322 3577899999888773 2 24467788888865 45788999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
.+.- ++ .+...++..+.+..++++.+...+...-
T Consensus 391 A~~g-------~~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 391 AEKG-------NP---SAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHcc-------Ch---hhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 7642 12 2344455554433356665555554433
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.01 Score=48.85 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=74.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|.+++|++.|..++.+ +|..+..+...+ .++...++...|+.-+..++.+ ++
T Consensus 126 n~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~----------sv~lkl~kp~~airD~d~A~ei--------n~ 179 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--------NPPLAILYAKRA----------SVFLKLKKPNAAIRDCDFAIEI--------NP 179 (377)
T ss_pred cCcchhhhhccccccccc--------CCchhhhccccc----------ceeeeccCCchhhhhhhhhhcc--------Cc
Confidence 789999999999999887 677788888888 8889999999999999999996 45
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+.-|-.-|.....+|+|++|-..+..+.++.
T Consensus 180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 180 DSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 556666677888888999999999999998763
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.7 Score=34.77 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=75.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..+++..|...+..+-.. ..+ .....++.++. .......+..+|..+|+.+.+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~------~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYG------AGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred ccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHH------hccCccccHHHHHHHHHHHhhc----------
Confidence 677888888888876552 111 45555664443 2224455688899999854441
Q ss_pred HHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC--------HHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE--------YHKAEKL 197 (303)
Q Consensus 130 ~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~--------~~~A~~~ 197 (303)
....+..+||.+|.. ..+..+|..+|++|.+.- + +.-..+...+|..|. .|. ...|...
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~-~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~ 177 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------N-VEAALAMYRLGLAYL--SGLQALAVAYDDKKALYL 177 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------C-hhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHH
Confidence 234466789999887 558999999999998642 1 221445778888884 442 2356666
Q ss_pred HHHHHH
Q psy4339 198 YFRSIE 203 (303)
Q Consensus 198 ~~~al~ 203 (303)
|.++-.
T Consensus 178 ~~~aa~ 183 (292)
T COG0790 178 YRKAAE 183 (292)
T ss_pred HHHHHH
Confidence 666554
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.64 Score=33.22 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQK---FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
..+.+++|+++....+ ..+.+.+++..++ . ..+.......+.||..+ |+.|+|++|+.+.+..++..|++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~-yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGH-YRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHH-HHHhhHHHHHHHHHHHHhhCCCc
Confidence 4567889999887544 4456666665554 1 23334566788999999 49999999999999999998866
Q ss_pred hhhhhh
Q psy4339 209 KLFSAS 214 (303)
Q Consensus 209 ~~~~~~ 214 (303)
++....
T Consensus 105 ~Qa~~L 110 (149)
T KOG3364|consen 105 RQALEL 110 (149)
T ss_pred HHHHHH
Confidence 654433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.79 Score=26.97 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++.+|..+.++|+|++|..+.+.++++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999875
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=93.65 E-value=4.2 Score=34.94 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--LTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..++..+-..++. ..++++.+|..+-...+.-... ......+ .+.++..+. .+|...|+...-..
T Consensus 124 i~aY~~lLv~Lfl--~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~----------l~~E~~~~l~~~rs 190 (493)
T KOG2581|consen 124 IEAYLYLLVLLFL--IDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLY----------LSYELEGRLADIRS 190 (493)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH----------HHHHhhcchHHHHH
Confidence 3444444334432 4678999998887776544221 1111111 334444444 44466666555555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+..-+... .++.+....+...+.|=.+|...+.|+.|.....++.-- + ...+.+.+.-++.+|.+.. -+++|
T Consensus 191 ~l~~~lrtA--tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p-e---~~snne~ARY~yY~GrIka-iqldY 263 (493)
T KOG2581|consen 191 FLHALLRTA--TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP-E---AASNNEWARYLYYLGRIKA-IQLDY 263 (493)
T ss_pred HHHHHHHHh--hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc-c---ccccHHHHHHHHHHhhHHH-hhcch
Confidence 554444432 234455556667777888999999999999887765311 0 0122366778889999998 99999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy4339 192 HKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~ 209 (303)
..|.+++-+|+...|++.
T Consensus 264 ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHhCcchh
Confidence 999999999999999644
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.6 Score=33.77 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=64.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH-------------
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN------------- 115 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------- 115 (303)
...|++.+|...+..++... |....+...++ .+|...|+.+.|...+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la----------~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--------PENSEAKLLLA----------ECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--------cccchHHHHHH----------HHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 37899999999999988873 33345555566 555777777666655543
Q ss_pred --HHHHHHHhhC-----------CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 116 --ALVLSLKHFG-----------ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 116 --al~~~~~~~~-----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
-+++..+... ..+|+...+-..+|..+...|+.++|.+.+-..+..
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333332211 124555677789999999999999999998766554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.5 Score=32.56 Aligned_cols=70 Identities=11% Similarity=-0.107 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+......+..+..+-...++.+++...+.-.-.+. |.....-..-|.++. ..|++.+|+..++.+..-.+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAP 75 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCC
Confidence 34556677788888888899999998886543332 555666778899998 99999999999999765544
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.1 Score=34.79 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.++.-.|+|..|++.++..---.+.......+-...+++.+|-+|..+++|.+|++.|..++-...+
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999887642211111222334556678899999999999999999999998876544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.83 Score=37.33 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
......++-.+|...++++.|+.+.+..+.+. +++| .-+...|.+|. .+|.+..|..-++.-++.+|+.|.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp---~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDP---YEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchh
Confidence 45678899999999999999999999998875 4444 44577999997 999999999999999999885443
|
|
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.5 Score=36.57 Aligned_cols=119 Identities=17% Similarity=-0.006 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh---HHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF---YKEAELL 112 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---~~~A~~~ 112 (303)
.++..|.+. .....|++|+.++-.|-+.+-. .++.+...--|.+.+-..|. ++|+...+ .++|..-
T Consensus 165 g~hekaRa~----m~re~y~eAl~~LleADe~F~~----Cd~klLe~VDNyallnLDIV---WCYfrLknitcL~DAe~R 233 (568)
T KOG2561|consen 165 GLHEKARAA----MEREMYSEALLVLLEADESFSL----CDSKLLELVDNYALLNLDIV---WCYFRLKNITCLPDAEVR 233 (568)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHh----hhHHHHHhhcchhhhhcchh---heehhhcccccCChHHHH
Confidence 444555555 5778899999888888776543 35555555555555444444 55555553 4566666
Q ss_pred HHHHHHHHHHhhC-----------CCcHHH---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 113 HQNALVLSLKHFG-----------ENNVQT---AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 113 ~~~al~~~~~~~~-----------~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+..|-+-+...+| +..|.. ...+..-|.+.+.+|+-++|.++++.+.......
T Consensus 234 L~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 234 LVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred HHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 6666655555433 344543 3445667999999999999999999998766553
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.9 Score=36.08 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=74.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---cH---H----HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGEN---NV---Q----TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..++++++|..|.--|+.+++++.+-.... .+ + ...+-..|..||..+++.+-|+.+-.+++.+
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l------ 257 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL------ 257 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc------
Confidence 566789999999999999999886531111 11 1 1234457899999999999999999888764
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|.....+...|.+++ .+.+|.+|-..+--+.-++-
T Consensus 258 --nP~~frnHLrqAavfR-~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 --NPSYFRNHLRQAAVFR-RLERYSEAARSAMIADYMYW 293 (569)
T ss_pred --CcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3666677788899998 99999999877665554443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.17 Score=24.70 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.93 E-value=5.7 Score=34.40 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=74.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcch---hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENH---LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE 126 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 126 (303)
.+++|..|..-|..+++++.+...... +....+...-+++-..+. .+|...++.+-|+..-.+++.+
T Consensus 188 rqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv---~CYL~~rkpdlALnh~hrsI~l------- 257 (569)
T PF15015_consen 188 RQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV---TCYLRMRKPDLALNHSHRSINL------- 257 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH---HhhhhcCCCchHHHHHhhhhhc-------
Confidence 899999999999999999876422222 222222222222322333 7889999999999999998885
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+|....-+..-|.|+..+.+|.+|-+.+.-+.-++.-
T Consensus 258 -nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 258 -NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555667899999999999999988777666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.5 Score=34.15 Aligned_cols=177 Identities=11% Similarity=-0.044 Sum_probs=104.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|..+.|..|-+++-... |....+....= ...+..|+++.|++.......... .+++-
T Consensus 165 qr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtL----------e~r~~~gdWd~AlkLvd~~~~~~v--ie~~~ 224 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--------PQLPWAARATL----------EARCAAGDWDGALKLVDAQRAAKV--IEKDV 224 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--------cCCchHHHHHH----------HHHHhcCChHHHHHHHHHHHHHHh--hchhh
Confidence 47899999999999887763 22222111111 444789999999999988776432 12222
Q ss_pred HHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTA--KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.... ..+..-+..... -+...|...-.++.++. |+..-.-..-+..+. ..|+..++-.+++.+-+..|
T Consensus 225 aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf-~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 225 AERSRAVLLTAKAMSLLD-ADPASARDDALEANKLA--------PDLVPAAVVAARALF-RDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcC--------CccchHHHHHHHHHH-hccchhhhhhHHHHHHhcCC
Confidence 2222 222222222222 34566777777777654 444444455677885 99999999999998887655
Q ss_pred hhhhhhhhhhhhh-------hhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 207 NLKLFSASYSGLE-------YHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 207 ~~~~~~~~~~~l~-------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
||.++..|-... .+.++. .+..-.|+...+....+..-..-|++..|..
T Consensus 295 -HP~ia~lY~~ar~gdta~dRlkRa~-~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 295 -HPDIALLYVRARSGDTALDRLKRAK-KLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred -ChHHHHHHHHhcCCCcHHHHHHHHH-HHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 888888886552 222221 1122233344445556666666666655544
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.7 Score=34.18 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
+..++..+| .-|..-|+++.|++.|-++.+.+. ....++..+.|+-.+-..+|+|..-..+-.+|
T Consensus 149 iRra~~Dl~----------dhy~~cG~l~~Alr~YsR~RdYCT-----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 149 IRRALEDLG----------DHYLDCGQLDNALRCYSRARDYCT-----SAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHH----------HHHHHhccHHHHHhhhhhhhhhhc-----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 445666777 777999999999999999888764 34567888889999999999999888888888
Q ss_pred HHHH---HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 159 IAIK---EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 159 l~~~---~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
...- +.. ...-|....+. -|.+.. .+++|..|..++-.+.
T Consensus 214 ~st~~~~~~~-~q~v~~kl~C~--agLa~L-~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 214 ESTPDANENL-AQEVPAKLKCA--AGLANL-LLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhCchhhhhH-HHhcCcchHHH--HHHHHH-HHHHHHHHHHHHHhCC
Confidence 6652 110 01112223344 444444 5679999988886654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.18 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
+...+|.++. .+|++++|...+++
T Consensus 3 a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 5678999997 99999999988763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=92.58 E-value=6.2 Score=33.95 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+-.++..+|..|..-|+++.|+++|-++-+.+.. ...++..+.++-.+-. -.|+|..-..+-.+|...
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI-~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSI-YMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHH-hhcchhhhhhHHHHHHhC
Confidence 34568899999999999999999999998777633 3567778888888887 689998888888887765
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.2 Score=32.62 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcHH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFD-EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 136 ~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
.+++.+....+.-+ +-.++.++|++-. + .+.........+..+|..+. +.|++.+|..++-
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHH
Confidence 45555555443322 3445566666655 2 33444455677889999997 9999999998874
|
; PDB: 3LKU_E 2WPV_G. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=92.35 E-value=4.9 Score=32.23 Aligned_cols=59 Identities=14% Similarity=-0.034 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|...|++|+++.+...++.+|.......|.+..|..-.|+.++|+...++|+....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 47899999999999999888999998888888888773258999999999999987665
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.3 Score=42.15 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKE-KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+...|..+++-+|+|..|++.++.. ++.+ ..+..-.+-...+++.+|-+|. .+++|.+|+..|..++....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFayl-MlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYL-MLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999988653 2221 1222334556778999999998 99999999999999987555
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.98 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+|....+...+|..+...|++++|++.+.+++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556678899999999999999999999877654
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=92.04 E-value=13 Score=36.30 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHH--HHH---------------hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAI--KEK---------------VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL 197 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~ 197 (303)
+..||..+..+|+|.-|...-++|-.+ ++. ..|-+-.-.+.-+-.+...|. ..|-+++-+.+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq-~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ-DRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH-hcCcHHHHHHH
Confidence 456778888888998888888776432 211 122221112333556777787 88888888888
Q ss_pred HHHHHHhhhhh
Q psy4339 198 YFRSIEINDNL 208 (303)
Q Consensus 198 ~~~al~~~~~~ 208 (303)
++.++-+-..|
T Consensus 1302 ~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1302 LEAGLGLERAH 1312 (1666)
T ss_pred HHhhhchhHHH
Confidence 88888766643
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.7 Score=39.15 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=66.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
+.+|+..+|..++..++..... + ..-.++..+|.++.+.|...+|--.+..|+. +.+.+...++.+
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~-----h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~--------dA~~~t~n~y~l 289 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSR-----H-NKDIALLSLATVLHRAGFSADAAVILHAALD--------DADFFTSNYYTL 289 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCc-----c-cccchhhhHHHHHHHcccccchhheeehhcc--------CCccccccceeH
Confidence 6778999999999988886432 1 1223566889999999998888877766553 224444447788
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.++. ..|.+.....+|..+.+..|
T Consensus 290 ~~i~a-ml~~~N~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 290 GNIYA-MLGEYNHSVLCYDHALQARP 314 (886)
T ss_pred HHHHH-HHhhhhhhhhhhhhhhccCc
Confidence 88887 88888888888888777666
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.92 E-value=7 Score=33.04 Aligned_cols=130 Identities=8% Similarity=-0.080 Sum_probs=81.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
...+.-..+|++|++- .++++.....+...|. ...+-++..+-+++++.. .++++.+...|..
T Consensus 45 a~~E~klsilerAL~~-----np~~~~L~l~~l~~~~-------~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 45 ALAERKLSILERALKH-----NPDSERLLLGYLEEGE-------KVWDSEKLAKKWEELLFK-----NPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHH
Confidence 3345555666666655 3455555555555553 445666667777776665 1334444333322
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN----------NVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.- ......-.++.....|.+++.......... ......++.++.......|..+.|+..+
T Consensus 108 ~~----------q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~ 177 (321)
T PF08424_consen 108 FR----------QSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALW 177 (321)
T ss_pred HH----------HHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHH
Confidence 22 111233467888899999988776553332 2245567788899999999999999999
Q ss_pred HHHHHHH
Q psy4339 156 LKAIAIK 162 (303)
Q Consensus 156 ~~al~~~ 162 (303)
+-.++..
T Consensus 178 Qa~lE~n 184 (321)
T PF08424_consen 178 QALLEFN 184 (321)
T ss_pred HHHHHHH
Confidence 9888864
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=91.55 E-value=11 Score=34.59 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=69.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+...+|..++++|..++..+... ..+...+....+++ .+|....+.|.|.+++++|-+. +
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~----------~CYL~L~QLD~A~E~~~EAE~~--------d 424 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQ----------VCYLKLEQLDNAVEVYQEAEEV--------D 424 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHhh--------c
Confidence 47889999999999998875431 23344677788888 7779999999999999999885 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|...-....+-......+.-++|+.+........
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 2223333445555666788899999888776654
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.5 Score=29.62 Aligned_cols=71 Identities=7% Similarity=-0.023 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...+..++|+.+ .--....+..+.+.+++..++. ..+...-...+.||.-+.+.++|++|+.+.+..
T Consensus 31 s~~s~f~lAwaL-------V~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 31 SKQSQFNLAWAL-------VRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHHHHH-------HcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 346667777555 2223445566677777766651 223345567888999999999999999999888
Q ss_pred HHHH
Q psy4339 159 IAIK 162 (303)
Q Consensus 159 l~~~ 162 (303)
++..
T Consensus 98 l~~e 101 (149)
T KOG3364|consen 98 LETE 101 (149)
T ss_pred HhhC
Confidence 7653
|
|
| >KOG0508|consensus | Back alignment and domain information |
|---|
Probab=91.12 E-value=3 Score=36.44 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
..+-..+--+++=+++.++|++||++.......|-+| ..+|+++..++.+.-|+++-.+.+.+-+|..+..+...+
T Consensus 311 v~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavy----ad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFa 386 (615)
T KOG0508|consen 311 VEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVY----ADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFA 386 (615)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeee----cCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Confidence 3444556667888999999999999876666666344 799999999999999999999998888998888888888
Q ss_pred HHHHHHhhhh----------HHHHhhhhHHHHHHHHHHHHHHHH
Q psy4339 88 LILEEIALDS----------NELISVQFYKEAELLHQNALVLSL 121 (303)
Q Consensus 88 ~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~~~ 121 (303)
.++..+--+. ..-...|=+.++.--.++++....
T Consensus 387 elFS~mL~d~~~~g~~~~~i~~~~~~~Vl~k~vlEvEra~~~t~ 430 (615)
T KOG0508|consen 387 ELFSFMLQDFAAKGSLGTQIGFDDLMGVLTKSVLEVERALALTR 430 (615)
T ss_pred HHHHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665432111 111233444555555666666543
|
|
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=91.12 E-value=8.1 Score=32.28 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+-++-+.+.++-.++.+| ......+..+.| .-|++.|+-+.|++.+++..+-.-.. +...++.-+.
T Consensus 82 eki~eld~~iedaeenlG--E~ev~ea~~~ka----------eYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~ 147 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLG--ESEVREAMLRKA----------EYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHH----------HHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 344555566666555433 334667788888 77799999999999998877643322 2334566677
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.+|....-..+.++ +|-.+.++ |.+....-.....-|.... ...++.+|-.+|-.++..+.
T Consensus 148 iRlglfy~D~~lV~~~ie---kak~liE~--GgDWeRrNRlKvY~Gly~m-svR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 148 IRLGLFYLDHDLVTESIE---KAKSLIEE--GGDWERRNRLKVYQGLYCM-SVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHhhccHHHHHHHHH---HHHHHHHh--CCChhhhhhHHHHHHHHHH-HHHhHHHHHHHHHHHccccc
Confidence 889999987765555444 33344443 2332322233344555665 77899999999988876665
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.09 E-value=7.6 Score=31.90 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
++-++-+.+.++-.+.. ......+.+..++| .-|...++.+.+.++..+.++-.... .-..++.-+
T Consensus 92 eeki~Elde~i~~~eed--ngE~e~~ea~~n~a----------eyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~ 157 (412)
T COG5187 92 EEKIEELDERIREKEED--NGETEGSEADRNIA----------EYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLC 157 (412)
T ss_pred HHHHHHHHHHHHHHhhc--ccchHHHHHHHHHH----------HHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHH
Confidence 44455555555554442 12345678889999 77799999999999999887754332 234456666
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-..||.+|..+.-.++.++.....++ + |.+....-......|...+ ...++.+|-.++-.++..+.
T Consensus 158 kiRlg~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m-~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 158 KIRLGLIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKM-MRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhcccc
Confidence 77899999888877777766655544 3 2332332333345566666 77889999999888776655
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.8 Score=27.85 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|....+.+.+|..+. ..|++++|++.+-.++...+
T Consensus 19 P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 19 PDDLDARYALADALL-AAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp TT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-T
T ss_pred CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc
Confidence 666688899999998 99999999999999887765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=4.1 Score=33.34 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=54.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.+|...++++.|+.+.+..+.+ .+++|. -+-..|.+|.++|.+..|..-++.-++.+ ++.|....+.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~dp~a~~ik 255 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PEDPISEMIR 255 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCchhHHHHH
Confidence 7789999999999999999986 244443 34578999999999999999999888765 5566654444
Q ss_pred HHHH
Q psy4339 178 GHLA 181 (303)
Q Consensus 178 ~~la 181 (303)
..+.
T Consensus 256 ~ql~ 259 (269)
T PRK10941 256 AQIH 259 (269)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.13 E-value=2.9 Score=40.50 Aligned_cols=86 Identities=16% Similarity=0.087 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH----HHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVG----HLASLYNY 186 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~la~~~~~ 186 (303)
+.|.+|+..++...+ .+...--|..-|.+|..+|+++|-++++.-|++.+ ++||......- .+-.+..
T Consensus 533 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 604 (932)
T PRK13184 533 RDFTQALSEFSYLHG--GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLY- 604 (932)
T ss_pred HHHHHHHHHHHHhcC--CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHH-
Confidence 556666666665532 23333347788899999999999999999999887 66776654332 2222221
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
.+-..|....--++.+.|
T Consensus 605 --~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 605 --KHRREALVFMLLALWIAP 622 (932)
T ss_pred --HHHHHHHHHHHHHHHhCc
Confidence 122345455555555555
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=89.95 E-value=5.2 Score=28.16 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNV-------QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+.....+++-.|+-.|++|+.+.++....+.. .......|||.++..+|+.+=.++|++-|-+.....
T Consensus 9 d~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 9 DQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44578889999999999999998876322211 123456799999999999999999998876654443
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=89.87 E-value=14 Score=33.07 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-YHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-~~~A~~~~~~al~~~~ 206 (303)
..+..--+..+|.++..+|+...|..+|..+++-. .....++-..+.+++.+|.+|. .+|. ..++..++.+|-....
T Consensus 445 ~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~-~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 445 SDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYW-DLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHH-hcccChHHHHHHHHHHHhhcc
Confidence 33445567789999999999999999999888652 2223455557789999999997 9988 9999999999987653
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=89.74 E-value=15 Score=33.00 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh
Q psy4339 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 248 (303)
+..+..--+.-+|.+++ .+|+...|..++..+++-.. ....+....+.+++.+|..+..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~--------------------~~~~d~w~~PfA~YElA~l~~~ 502 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKES--------------------KRTEDLWAVPFALYELALLYWD 502 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH--------------------hhccccccccHHHHHHHHHHHh
Confidence 33444555677899998 99999999999998886522 3344455677889999999999
Q ss_pred hhc-HHHHHHHHHHH
Q psy4339 249 LEN-FEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~-~~~A~~~~~~~ 262 (303)
+|. ..++.+++.++
T Consensus 503 ~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 503 LGGGLKEARALLLKA 517 (546)
T ss_pred cccChHHHHHHHHHH
Confidence 999 99999977666
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=89.73 E-value=7.5 Score=29.65 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh--hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNE--YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
++-..+-|+.|.++++....++ ..+.+.+.+| .|+..- ...++...|+..+..+-+. +.| .+-.+
T Consensus 44 lEgi~knF~~A~kv~K~nCden--~y~kSCyKyG-~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n~~---~aC~~ 110 (248)
T KOG4014|consen 44 LEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYG-MYMLAGKGGDDASLSKAIRPMKIACDA-------NIP---QACRY 110 (248)
T ss_pred HHHHHHHHHHHHHHHHhccccc--CCcHHHHHhh-hhhhcccCCCccCHHHHHHHHHHHhcc-------CCH---HHHhh
Confidence 3444556888888888765433 3456777777 343100 0234566777777766542 233 44445
Q ss_pred HHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH------------------------HH
Q psy4339 86 KALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGN------------------------IG 139 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------la 139 (303)
+|++...-.. -+.+ +..+|++++.++-++-. ..+-++ -+
T Consensus 111 ~gLl~~~g~~-----~r~~dpd~~Ka~~y~traCdl~~----------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~ 175 (248)
T KOG4014|consen 111 LGLLHWNGEK-----DRKADPDSEKAERYMTRACDLED----------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRA 175 (248)
T ss_pred hhhhhccCcC-----CccCCCCcHHHHHHHHHhccCCC----------chHHHHHHHHHhccchhhcccCCCCCCCcchh
Confidence 5543311110 1222 36788888888766410 111112 22
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhhh
Q psy4339 140 RLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-----EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 140 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-----~~~~A~~~~~~al~~~~ 206 (303)
..+.-..+.++|..+--+|.++. ...+..|+++.| .+| +-++|..+-.+|.++.+
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~----------~~~aCAN~SrMy--klGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD----------IPQACANVSRMY--KLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC----------ChHHHhhHHHHH--HccCCCCccHHHHHHHHHHHHHHHH
Confidence 33444567788888877777642 335667888887 465 57899999999999887
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=89.67 E-value=17 Score=33.58 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHHHHHhhcHHHHHHHH------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 138 IGRLYQSMQKFDEAERMQ------LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 138 la~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
-|..+...|+.++|+... +-++++.++.. ......+..++..+. ....+.-|.+.|++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk-~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLK-KLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHh-hccccchHHHHHHH
Confidence 356677778888877654 33455544431 111233344444443 45555555555544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.86 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++|..|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999884
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.91 E-value=7.9 Score=28.81 Aligned_cols=89 Identities=6% Similarity=-0.098 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
......+..+..+- ...++.+++...+.- +... .|.....-..-| ..+...|++.+|+
T Consensus 7 ~~iv~gLie~~~~a----l~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~----------~l~i~r~~w~dA~ 64 (160)
T PF09613_consen 7 DEIVGGLIEVLSVA----LRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDG----------WLHIVRGDWDDAL 64 (160)
T ss_pred HHHHHHHHHHHHHH----HccCChHHHHHHHHH-HHHh-------CCCchHHHHHHH----------HHHHHhCCHHHHH
Confidence 34555666555444 477888888877754 4432 334444444455 5558999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
..++.... ..|....+-..++.|+..+|+.+
T Consensus 65 rlLr~l~~--------~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 65 RLLRELEE--------RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHhc--------cCCCChHHHHHHHHHHHHcCChH
Confidence 99998654 23434444556888888888763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.89 E-value=13 Score=33.06 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..|..||.....+|+++-|+++|+++-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 367788888888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.86 E-value=5.2 Score=29.33 Aligned_cols=69 Identities=7% Similarity=-0.135 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
......+..+..+-...++.+++...+...--+. |.....-..-|.++. ..|++++|+..++....-.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCC
Confidence 3444555666666666889999988876443332 555566677899998 99999999999998776554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.45 E-value=14 Score=31.19 Aligned_cols=131 Identities=9% Similarity=-0.039 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
+.-+..+++|++. .++++.+...+...| .....-++..+-+++++... ++.+..-..
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~~~-------------~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~ 104 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLEEG-------------EKVWDSEKLAKKWEELLFKN-----PGSPELWRE 104 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHC-----CCChHHHHH
Confidence 3445556666555 234444444444444 44555566666666666641 334444444
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD----------DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|.+.-..-.....+++....|.+++.......... ......++..+..... ..|..+.|+..++-.+++
T Consensus 105 yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~-~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 105 YLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR-QAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH-HCCchHHHHHHHHHHHHH
Confidence 44443333445568888999999888766543322 2234566778888887 999999999999999987
Q ss_pred hhhhh
Q psy4339 205 NDNLK 209 (303)
Q Consensus 205 ~~~~~ 209 (303)
.-..|
T Consensus 184 n~~~P 188 (321)
T PF08424_consen 184 NFFRP 188 (321)
T ss_pred HcCCc
Confidence 65444
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.5 Score=36.14 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-.+.|.-....|+.++|..+|+.|+.+. |....++..+|.... .-++.-+|-.+|-+|+.+.|
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCC
Confidence 33455666677899999999999999875 444566788999987 78899999999999999988
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.2 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
..+|+.|-..|.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45789999999999999999999875
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=87.97 E-value=13 Score=30.03 Aligned_cols=99 Identities=11% Similarity=-0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENN---VQTAKHYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+=...+...+.+..+.+-+.. ......+-..|..|...-. .++|...|++|+++.....++.+|...
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 445566667776655443321 2233334455665555422 458999999999998877788888887
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....|.+..|..-+++.++|..+.++|+.-.-
T Consensus 171 gLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 171 GLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 77788887774246999999988888886554
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=87.58 E-value=4.2 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
+..+...|.-+-..|++++|+.+|+++++...+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888999999999999999877654
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.3 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
..+|.+|. .+|+.+.|...+++++.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 57899998 99999999999999985
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=87.33 E-value=18 Score=31.22 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhC-----CcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLL-----PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG 125 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 125 (303)
-.+|++|..+|..+...+.+.. .+.-.+-..+....+.+|..++ ...++.+.-....++=+++.+....
T Consensus 137 ~~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~La------fFE~~~~r~~kmhkRR~d~Le~~~~ 210 (371)
T PF12309_consen 137 CLDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLA------FFEEDPDRQIKMHKRRADLLEPLLK 210 (371)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH------hhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999888887766542 1222223444555554443222 4457777777777777777665543
Q ss_pred CCcHH-----HHHHHHHHHHHHHHh-------hc--------------------HHHHHHHHHHHHHHHHHhcCCC----
Q psy4339 126 ENNVQ-----TAKHYGNIGRLYQSM-------QK--------------------FDEAERMQLKAIAIKEKVLGKD---- 169 (303)
Q Consensus 126 ~~~~~-----~~~~~~~la~~~~~~-------~~--------------------~~~A~~~~~~al~~~~~~~~~~---- 169 (303)
.-+|. .-..+..+|.+|..+ .+ ...|+.+|+.-++.+...-+..
T Consensus 211 ~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~ 290 (371)
T PF12309_consen 211 ELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEK 290 (371)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 33332 123444555554332 22 2345666666665554211001
Q ss_pred -----chHHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHhhh
Q psy4339 170 -----DYEVGLSVGHLASLYNYHM---------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 -----~~~~~~~~~~la~~~~~~~---------g~~~~A~~~~~~al~~~~ 206 (303)
......++..+|.+|. +. ++...++.+|+.++....
T Consensus 291 ~~~d~~~~~l~a~f~~arl~~-K~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 291 LDEDELRPYLYAYFHIARLYS-KLITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred CcHHHHHHHHHHHHHHHHHHc-cccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234677889999985 65 456677777777777666
|
Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.89 E-value=21 Score=31.44 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=43.0
Q ss_pred HhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q psy4339 186 YHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEW 265 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 265 (303)
|.+|+|.++.-+-.-..+++| ...++.-+|.+.....+|++|..++..+-..
T Consensus 473 ysqgey~kc~~ys~WL~~iaP----------------------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP----------------------------SPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC----------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 489999999888777777766 3456899999999999999999988777333
Q ss_pred H
Q psy4339 266 K 266 (303)
Q Consensus 266 ~ 266 (303)
+
T Consensus 525 ~ 525 (549)
T PF07079_consen 525 E 525 (549)
T ss_pred h
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.2 Score=34.90 Aligned_cols=46 Identities=30% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|..+|.+|+.+. |..+..++.+|.+.. ..|+.-.|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhc-cccchHHHHHHHHHHHhcC
Confidence 678999999887 778899999999998 8999999999999998543
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=86.38 E-value=21 Score=30.89 Aligned_cols=154 Identities=12% Similarity=-0.017 Sum_probs=87.3
Q ss_pred HhHHHHHHHHHHHHHHHHhC----CCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh----
Q psy4339 8 LKNLSLCSQLALKLKQVLFG----SEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL---- 78 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~----~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---- 78 (303)
++.|..+|..+...+.+... +++ .+.+.+....+.+|-.+-+-.++.+.-....++-+++++.....-+|.
T Consensus 140 f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~ 219 (371)
T PF12309_consen 140 FDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLN 219 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 45566666666555544321 122 223444444443331111245788888889998888887765443443
Q ss_pred -hHHHHHHHHHHHHHHhhhhHHHHh--------------------hhhHHHHHHHHHHHHHHHHHhhCCC---------c
Q psy4339 79 -LTSAHRVKALILEEIALDSNELIS--------------------VQFYKEAELLHQNALVLSLKHFGEN---------N 128 (303)
Q Consensus 79 -~~~~~~~la~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~---------~ 128 (303)
....+..+|.++.+|- .+... ..-...|+.+|+.-++.+....+.. .
T Consensus 220 ~~rql~fElae~~~~i~---dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~ 296 (371)
T PF12309_consen 220 LCRQLWFELAEIYSEIM---DLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDEL 296 (371)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHH
Confidence 3456677777776554 22222 2234567778888777765321010 1
Q ss_pred HHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~ 164 (303)
.....+++.+|.+|.+. +....|+.+|+.+++.+++
T Consensus 297 ~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~ 341 (371)
T PF12309_consen 297 RPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEK 341 (371)
T ss_pred HHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23457888999999776 4455666666666665543
|
Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein. |
| >KOG4563|consensus | Back alignment and domain information |
|---|
Probab=86.34 E-value=3 Score=35.16 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL 197 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~ 197 (303)
..-+...|.-.+.++++++|...|..|..+....+|..+.....+++..|..+. ..++.+...-.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslL-ela~~e~~VL~ 105 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLL-ELAKEESQVLG 105 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 344567888999999999999999999999999999999999999999999996 88877655433
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=86.24 E-value=42 Score=34.21 Aligned_cols=163 Identities=16% Similarity=0.063 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH---hhhh----HH------
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI---ALDS----NE------ 99 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~----~~------ 99 (303)
.+...-.+|..+ ...|++.+|+..|.+|++..+.. .|+.-.+.++-.++.+..-+ ++.. .+
T Consensus 241 ~gR~~k~~gd~~----LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 241 KGRLQKVLGDLY----LLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhHH----HHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 345566677544 68999999999999999998874 44444555555554332111 0000 00
Q ss_pred ----------------------------------------HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy4339 100 ----------------------------------------LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIG 139 (303)
Q Consensus 100 ----------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 139 (303)
-.-...+++|+.+|.++.....+. -...-...+...++
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~--~p~lv~~E~~lr~~ 392 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY--VPQLVYSEACLRFA 392 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc--CcchHHHHHHHHHH
Confidence 001113445555555544322211 01113456777888
Q ss_pred HHHHHhh--------------------cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 140 RLYQSMQ--------------------KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 140 ~~~~~~~--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
.++.... .-.++..+..++..+.-.. -...+....+..+|.+|. ..|-..++--+++
T Consensus 393 ~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~-~lG~~RK~AFvlR 469 (1185)
T PF08626_consen 393 RFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYG-SLGFHRKKAFVLR 469 (1185)
T ss_pred HHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Confidence 8888877 7788888888888765332 234566788999999998 9999888888888
Q ss_pred HHHHhhh
Q psy4339 200 RSIEIND 206 (303)
Q Consensus 200 ~al~~~~ 206 (303)
.++...-
T Consensus 470 ~l~~~~~ 476 (1185)
T PF08626_consen 470 ELAVQLV 476 (1185)
T ss_pred HHHHHhc
Confidence 8776553
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.1 Score=35.36 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
-....|+.++|...|+.|+++ .|....++..+|.+....++.-+|-.+|-+|+.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 336889999999999999996 23444567889999999999999999999998774
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.14 E-value=18 Score=29.84 Aligned_cols=62 Identities=16% Similarity=0.008 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
...++..++..+. ..|+++.++..+++-+...| ..-..+..+-..|...|+.
T Consensus 152 ~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp---------------------------~~E~~~~~lm~~y~~~g~~ 203 (280)
T COG3629 152 FIKALTKLAEALI-ACGRADAVIEHLERLIELDP---------------------------YDEPAYLRLMEAYLVNGRQ 203 (280)
T ss_pred HHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCc---------------------------cchHHHHHHHHHHHHcCCc
Confidence 4667888999997 99999999999999887766 4445678888999999999
Q ss_pred HHHHHHHHHH
Q psy4339 253 EKMTEFTNKL 262 (303)
Q Consensus 253 ~~A~~~~~~~ 262 (303)
..|+..++.+
T Consensus 204 ~~ai~~y~~l 213 (280)
T COG3629 204 SAAIRAYRQL 213 (280)
T ss_pred hHHHHHHHHH
Confidence 9999966665
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=86.08 E-value=8.5 Score=27.41 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
+.-..-...+++++..+... .-.+++....++...|.... ++.+.|..... +..| ...+..+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~---~~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS---KGIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH---HTTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH---cCcc---HHHHHHHHHHHH
Confidence 34445566788888877542 22345666666666555432 77777765443 2234 334567889999
Q ss_pred HHHHhhcCHHHHHHHHHHHH
Q psy4339 183 LYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~al 202 (303)
.+. ..|++.+|.+.|+.++
T Consensus 108 ~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHH-HTT-HHHHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHhhC
Confidence 997 9999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [] | Back alignment and domain information |
|---|
Probab=85.48 E-value=26 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..++.+|.+|+...+..++..| ...|..+|..|++.+++.+|+..+-+|-...+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999998887654332 345778999999999999999999998776544
|
; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A. |
| >cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.38 E-value=7.7 Score=25.02 Aligned_cols=24 Identities=8% Similarity=-0.256 Sum_probs=17.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-..|+.++|+.+|++++....+-.
T Consensus 19 dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 19 DEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHc
Confidence 445788888888888888776643
|
This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear. |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=85.18 E-value=47 Score=33.86 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=35.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQ 143 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 143 (303)
+.+...|++.+|+..|..|+...+.. .|+.+.+.++-.++.+..
T Consensus 250 d~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~ 293 (1185)
T PF08626_consen 250 DLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLL 293 (1185)
T ss_pred hHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHH
Confidence 77799999999999999999998864 566677777766665443
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.3 Score=34.84 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.....++.+-|.+.+.+++++. |.....|..+|.... +.|+++.|...|++.+++.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~e-kag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTE-KAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhh-hcccHHHHHHHHHHHHcCCcc
Confidence 3455688899999999999875 777888999999998 999999999999999999884
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.98 E-value=15 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHH----------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLK----------------AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~----------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
...++..+..+|-++.|+.+.+. |+++.+. ......|..||.... .+|+++-|+.+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL-~~g~~~lAe~c~ 370 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL-RQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH-HTTBHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 44566666777777666655422 2222211 112347899999998 999999999999
Q ss_pred HHHHHhhh
Q psy4339 199 FRSIEIND 206 (303)
Q Consensus 199 ~~al~~~~ 206 (303)
+++-....
T Consensus 371 ~k~~d~~~ 378 (443)
T PF04053_consen 371 QKAKDFSG 378 (443)
T ss_dssp HHCT-HHH
T ss_pred HhhcCccc
Confidence 98755443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4521|consensus | Back alignment and domain information |
|---|
Probab=84.75 E-value=44 Score=33.22 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------------CCcchhh--h-HHHHHHHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-----------------LPENHLL--L-TSAHRVKALILEEI 93 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~--~-~~~~~~la~~~~~~ 93 (303)
......+|.+| ...|.-.+|+.+|.+|..-..+- ..++.+. . +.-|+... .
T Consensus 920 ~v~rfmlg~~y----l~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv--~--- 990 (1480)
T KOG4521|consen 920 PVIRFMLGIAY----LGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV--V--- 990 (1480)
T ss_pred HHHHHhhheee----ecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH--H---
Confidence 34556677555 58899999999999987542110 0001111 0 00011100 0
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...+-.+.+.+...+|++. .+++.|..+.++.++=..+..+|.+-+|...+-+- ++....
T Consensus 991 ----rlle~hn~~E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserr 1053 (1480)
T KOG4521|consen 991 ----RLLEEHNHAEEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERR 1053 (1480)
T ss_pred ----HHHHHhccHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHH
Confidence 2333444444444444444443 35667777777777777788888887776654322 233334
Q ss_pred HHHHHHHHHHHHHhhcCHH
Q psy4339 174 GLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~ 192 (303)
..++..+-.++. ..|+++
T Consensus 1054 rdcLRqlvivLf-ecg~l~ 1071 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLF-ECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHH-hccchH
Confidence 456677777774 777654
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=84.66 E-value=19 Score=29.03 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~ 226 (303)
.-...++++.+|++.+.+. ............+|..|. ..|++++|..+++.+.....
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr-------------------- 209 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYR-------------------- 209 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH--------------------
Confidence 3446688888888887664 223444556779999996 99999999999999976655
Q ss_pred hhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
-.....-...++..+..++...|+.+..+.
T Consensus 210 -~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 210 -REGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred -hCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 122233355678889999999999988887
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.42 E-value=22 Score=29.36 Aligned_cols=139 Identities=11% Similarity=0.016 Sum_probs=92.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
....++.-+......++...+. .... ....-..+. ..+...|.|.+|+......+.-+++. .+.
T Consensus 97 ~~dsl~dqi~v~~~~iewA~rE---kr~fLr~~Le~Kli----------~l~y~~~~YsdalalIn~ll~ElKk~--DDK 161 (421)
T COG5159 97 SSDSLEDQIKVLTALIEWADRE---KRKFLRLELECKLI----------YLLYKTGKYSDALALINPLLHELKKY--DDK 161 (421)
T ss_pred CCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----------HHHHhcccHHHHHHHHHHHHHHHHhh--cCc
Confidence 4556666666666666654431 1111 111111222 66689999999999999988888775 566
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.....+..-..+|....+..++...+..|-......+.| |.. +..-..=|.... .-.+|..|..+|-++++-+.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhc-dd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHC-DDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceee-ccccchhHHHHHHHHHhccc
Confidence 7777778788899999999999999998887766554332 322 222222355555 67789999999999987665
|
|
| >KOG1497|consensus | Back alignment and domain information |
|---|
Probab=84.15 E-value=24 Score=29.58 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
.+..+...||.+|...++|..|-..+.- +.........+.......+..+|.+|. ..++..+|..+..++--...
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyL-e~~d~veae~~inRaSil~a--- 175 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYL-EDDDKVEAEAYINRASILQA--- 175 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhh---
Confidence 4567788999999999999998877642 222110000111234556788999998 99999999999888754333
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.. .++. ....-...|.+.-..++|-+|.. |++..
T Consensus 176 ------------------~~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 176 ------------------ES-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred ------------------cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2222 23334456778888888888877 66443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=83.99 E-value=2 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467888999999999999999987653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.88 E-value=9.9 Score=31.33 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (303)
..+.-.+..|. ..|.+.+|+.+.++++...| -....+..+-.++...|+--.
T Consensus 280 kllgkva~~yl-e~g~~neAi~l~qr~ltldp---------------------------L~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 280 KLLGKVARAYL-EAGKPNEAIQLHQRALTLDP---------------------------LSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHhhcCh---------------------------hhhHHHHHHHHHHHHhccchh
Confidence 34455677887 89999999999999998877 344557788889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy4339 255 MTEFTNKLSEWKILRETNELN 275 (303)
Q Consensus 255 A~~~~~~~~~~~~~~~~~~~~ 275 (303)
|.+.++.. .+...+.+|-
T Consensus 332 ~~khyery---a~vleaelgi 349 (361)
T COG3947 332 AIKHYERY---AEVLEAELGI 349 (361)
T ss_pred hhhHHHHH---HHHHHHHhCC
Confidence 99855544 4555566665
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=83.82 E-value=2.4 Score=34.71 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
|..+|.+|+.+ .|..+..+++||.++...|+.=.|+-+|-+++-. ..|- ..+..||..++.
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHH
Confidence 67899999997 4667888999999999999999999999998743 2232 445666666665
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=83.31 E-value=26 Score=29.44 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
++++++-.++.+| .....+++.+.|. || .+.|+-+.|++.+.+..+..-.. +...+.......+|.+|
T Consensus 87 ld~~iedaeenlG--E~ev~ea~~~kae-Yy---cqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy---- 154 (393)
T KOG0687|consen 87 LDEKIEDAEENLG--ESEVREAMLRKAE-YY---CQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFY---- 154 (393)
T ss_pred HHHHHHHHHHhcc--hHHHHHHHHHHHH-HH---HHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhh----
Confidence 3444444444444 3467889999995 66 89999999999999877653332 22344555666677544
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
. +.+--.+..++|-.+.++ |.|-...-..-..-|..++...+|.+|-.+|-.++..+.
T Consensus 155 ------~---D~~lV~~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 155 ------L---DHDLVTESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ------c---cHHHHHHHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 2 222222233333333332 233222222233457777888999999999988876543
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=82.97 E-value=51 Score=32.53 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---h
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---K 209 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~ 209 (303)
..|..+|....+.|...+|++.|-+| ++| ..+...-.+.. ..|+|++-+.++..|-+..... .
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~-~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVAS-RTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhcCccchH
Confidence 45888999999999999999988775 223 23556666666 8899999999988877655421 1
Q ss_pred hhhhhhh---hhhhhHHH--------Hhhhc-----cccc-------cHHHHHHhHHHHHHhhhcHHHHHHHHHHH---H
Q psy4339 210 LFSASYS---GLEYHYRD--------LKLFS-----ASYS-------GLEYDYRGLIHVYECLENFEKMTEFTNKL---S 263 (303)
Q Consensus 210 ~~~~~~~---~l~~~~~a--------~~~~~-----~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~ 263 (303)
.+..+|. ++..+.+- ++..| .... ....-+..||..+...|+|..|...-+++ .
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 1222222 12111110 01111 1100 11223456888888899999988844433 5
Q ss_pred HHHHHHhhhh
Q psy4339 264 EWKILRETNE 273 (303)
Q Consensus 264 ~~~~~~~~~~ 273 (303)
.|++.+....
T Consensus 1251 tWK~VcfaCv 1260 (1666)
T KOG0985|consen 1251 TWKEVCFACV 1260 (1666)
T ss_pred HHHHHHHHHh
Confidence 6776665443
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=82.80 E-value=15 Score=26.20 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-CCcchhhhHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVA-IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-LPENHLLLTSAHRVK 86 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l 86 (303)
++....|++.+..+. - .++|-.+ .-+..-..-.| -..+.-..-...+++++..+... .-.+++....+....
T Consensus 2 ~~~r~~~e~~i~~~~--~-~dDPL~~w~~yI~w~~~~~---p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y 75 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYE--E-GDDPLDPWLRYIKWIEENY---PSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY 75 (126)
T ss_dssp HHHHHHHHHHHHCCG--G-SS-CHHHHHHHHHHHHHHC---TTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--C-CCCChHHHHHHHHHHHHHC---CCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence 444556666666544 1 3344332 22222111121 23345556677888888887542 113344455544444
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+ . ..+.+.+.|.....- -.| ...+..|..-|.++...|++++|.+.|+.++
T Consensus 76 a--------------~--~~~~~~~if~~l~~~---~IG---~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 76 A--------------D--LSSDPREIFKFLYSK---GIG---TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp H--------------T--TBSHHHHHHHHHHHH---TTS---TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred H--------------H--HccCHHHHHHHHHHc---Ccc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4 1 122677777654442 222 3456678889999999999999999998875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.25 E-value=20 Score=29.65 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..|...|.+.+|.++.++++.+ +|.....+..+-.++..+|+--.|.++|++--+..+..+|-+-...
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 6778899999999999999986 4555666778888889999999999999888777777666554433
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=82.02 E-value=30 Score=29.21 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=55.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh-----
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF----- 124 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 124 (303)
...+..+-++....|+++ +|..+.++..+|. ....-..+|+..+++|++..+..+
T Consensus 196 RERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAE------------EEa~Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEI--------NNECATAYVLLAE------------EEATTIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhh------------hhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334445555555666665 4666666666661 122345577777777776543321
Q ss_pred ----CC--------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 125 ----GE--------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 125 ----~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+. |......+-..||+|-.++|+..+|.+.++...+
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 1112233446799999999999999999987643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.00 E-value=20 Score=27.22 Aligned_cols=121 Identities=10% Similarity=-0.135 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH--HHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL--SVGHL 180 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~l 180 (303)
.+..++|+.-|...-+ ......|.. +....|.+....|+...|+..|.++-.- ...|.... +-..-
T Consensus 71 ~~k~d~Alaaf~~lek----tg~g~YpvL--A~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----TGYGSYPVL--ARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----cCCCcchHH--HHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence 3455566655544333 223344544 4568899999999999999999886532 12243332 23344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
|.++. ..|-|++-....+ ...++.+|....+...||..-.+.|++.+|..++.
T Consensus 139 a~lLv-D~gsy~dV~srve--------------------------pLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 139 AYLLV-DNGSYDDVSSRVE--------------------------PLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHh-ccccHHHHHHHhh--------------------------hccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 56666 7787776554332 23355667777788899999999999999999775
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 192 qi 193 (221)
T COG4649 192 QI 193 (221)
T ss_pred HH
Confidence 55
|
|
| >cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.95 E-value=11 Score=24.27 Aligned_cols=29 Identities=10% Similarity=-0.088 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+.|..+. ..|+.++|+.+|++++....
T Consensus 11 ~I~kaL~~d-E~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 11 EISKALRAD-EWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHhhhh-hcCCHHHHHHHHHHHHHHHH
Confidence 344455555 77999999999999998877
|
This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear. |
| >KOG4563|consensus | Back alignment and domain information |
|---|
Probab=81.43 E-value=8.8 Score=32.53 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+..+..+++++|...|..|..+..+.+|..+.....+++..|..+...++++.++-..
T Consensus 49 ~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 49 RRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred hHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5568899999999999999999999999999999999999999999988877665444
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=81.35 E-value=32 Score=29.12 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~ 176 (303)
..|...++|.+|+......+.-.++. .|.+.....+..-..+|....+..+|...+..|-......+- +|.. +..
T Consensus 136 ~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~l 211 (411)
T KOG1463|consen 136 RLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATL 211 (411)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHH
Confidence 77799999999999999998888776 455566666777788899999999999998888766544432 2332 222
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhh----------------hhHHHHhhhccccccHHHHHH
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE----------------YHYRDLKLFSASYSGLEYDYR 240 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~----------------~~~~a~~~~~~~~~~~~~~~~ 240 (303)
-..=|.++. ...+|..|..+|-+|++-+..-..--.+...|. .+..+.....-.. ....+..
T Consensus 212 DLqSGIlha-~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g-~~i~Amk 289 (411)
T KOG1463|consen 212 DLQSGILHA-AEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAG-RDIDAMK 289 (411)
T ss_pred HHhccceee-cccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccC-cchHHHH
Confidence 333466665 678999999999999887662111011111111 1111212222222 2345677
Q ss_pred hHHHHHHh--hhcHHHHHH-HHHHH
Q psy4339 241 GLIHVYEC--LENFEKMTE-FTNKL 262 (303)
Q Consensus 241 ~la~~~~~--~g~~~~A~~-~~~~~ 262 (303)
.+|..+.+ ..+|..|+. |...+
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 78887764 578888988 65544
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=81.06 E-value=6.5 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHH--HHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYF--RSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~--~al~~~~ 206 (303)
.+..+|..+. .+|++++|+..+. -+..+.+
T Consensus 3 ~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcc
Confidence 4567888995 9999999999954 5554443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.74 E-value=5.6 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.5
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
..|++++|+.+|.++++.+.
T Consensus 18 ~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 68999999999999999887
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=80.63 E-value=88 Score=33.87 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
....+++|...|.+. +..|+++.|..+.-.|.+.. ...+....| ...+..|+-..|
T Consensus 1666 ~~~~ge~wLqsAria----R~aG~~q~A~nall~A~e~r----------~~~i~~E~A----------K~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIA----RLAGHLQRAQNALLNAKESR----------LPEIVLERA----------KLLWQTGDELNA 1721 (2382)
T ss_pred cchhHHHHHHHHHHH----HhcccHHHHHHHHHhhhhcc----------cchHHHHHH----------HHHHhhccHHHH
Confidence 456889999999877 78999999998888876651 335555566 555899999999
Q ss_pred HHHHHHHHHHHHHhhCCC---cHH------HHHHHHHHHHHHHHhhcHH--HHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGEN---NVQ------TAKHYGNIGRLYQSMQKFD--EAERMQLKAIAIKE 163 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~---~~~------~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~ 163 (303)
+..+++.+.......... .|. ...+...++......++++ .-+++|.++.++..
T Consensus 1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 999999997654321111 111 1123334444444455532 34666777776653
|
|
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.55 E-value=12 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~ 122 (303)
-..|+|++|+.+|.++++.+..
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHccCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998876
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.27 E-value=31 Score=28.20 Aligned_cols=154 Identities=14% Similarity=-0.008 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A 109 (303)
.+..+.+..=+..+ ...|++..|-+...-.++.+++...+.+. ....++..+. ...+ .-.+-
T Consensus 7 ~eAidLL~~Ga~~l----l~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~~l~----------~~~~~~~p~r 69 (260)
T PF04190_consen 7 DEAIDLLYSGALIL----LKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLIELI----------SLFPPEEPER 69 (260)
T ss_dssp HHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHHHHH----------HHS-TT-TTH
T ss_pred HHHHHHHHHHHHHH----HHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHH----------HhCCCCcchH
Confidence 33444555555444 46777777777776666666653222211 2223333222 2221 11134
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--------HHHHhcCCCchHHHHHHHHH-
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA--------IKEKVLGKDDYEVGLSVGHL- 180 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~l- 180 (303)
.....+|++.. + .+.........+..+|..|...|++.+|..+|-.+-. +.........+.....+...
T Consensus 70 ~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 70 KKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 55666777766 2 2333334556788999999999999999999932211 11111111112222233333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..-|. ..|+...|...+..-.+.
T Consensus 148 VL~yL-~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYL-CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHH-HTTBHHHHHHHHHHHHHH
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHH
Confidence 33444 678988888877666654
|
; PDB: 3LKU_E 2WPV_G. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 303 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 5e-07 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 3e-05 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 2e-04 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 3e-05 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 2e-04 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-22
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
+ LC Q AL+ + G ++ VA + LA ++ E+ A+ +
Sbjct: 21 VPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKEAAHLLNDALAIREK 75
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGE 126
L ++H +A N L + YKEAE L + AL + K G+
Sbjct: 76 TLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186
+ AK N+ L Q+ K +E E +A+ I LG DD V + +LAS Y
Sbjct: 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY-L 180
Query: 187 HMLEYHKAEKLYFRSIEI 204
+Y AE LY +
Sbjct: 181 KQGKYQDAETLYKEILTR 198
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 9e-20
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YK 107
+ ++A++ + +H ++A N L V YK
Sbjct: 15 VPRGSAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYK 60
Query: 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167
EA L +AL + K G+++ A N+ LY K+ EAE + +A+ I+EKVLG
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120
Query: 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
K +V + +LA L + + + E Y R++EI
Sbjct: 121 KFHPDVAKQLNNLALLC-QNQGKAEEVEYYYRRALEI 156
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-17
Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 27/199 (13%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
LC + AL++++ + G + VA + LA + G+ E + +A++ +
Sbjct: 105 EPLCKR-ALEIREKVLGKFHPDVAKQLNNLALLCQ----NQGKAEEVEYYYRRALEIYAT 159
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLS-LKHFG 125
L + +A N L S Y++AE L++ L + K FG
Sbjct: 160 RLGPDDP--------------NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
N + + +S K ++ K D V ++ L +LY
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSPTVNTTLRSLGALY- 262
Query: 186 YHMLEYHKAEKLYFRSIEI 204
+ A L +
Sbjct: 263 RRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196
+ + A + +A+ EK G D +V + LA +Y +Y +A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKEAAH 64
Query: 197 LYFRSIEI 204
L ++ I
Sbjct: 65 LLNDALAI 72
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-22
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
+ LC Q AL+ + G ++ VA + LA ++ ++ A+ +
Sbjct: 47 VPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKDAANLLNDALAIREK 101
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGE 126
L ++H +A N L + YKEAE L + AL + K G+
Sbjct: 102 TLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147
Query: 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186
++ AK N+ L Q+ K++E E +A+ I + LG DD V + +LAS Y
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY-L 206
Query: 187 HMLEYHKAEKLYFRSIEI 204
++ +AE LY +
Sbjct: 207 KQGKFKQAETLYKEILTR 224
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 23/193 (11%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
L G E L S GR+ + ++A++ + +
Sbjct: 9 SGRENLYFQGGGYEIPARLRTLHNLVIQYA----SQGRYEVAVPLCKQALEDLEKTSGHD 64
Query: 76 HLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGENNVQT 131
H ++A N L V YK+A L +AL + K G+++
Sbjct: 65 HP--------------DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
A N+ LY K+ EAE + +A+ I+EKVLGKD +V + +LA L + +Y
Sbjct: 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC-QNQGKY 169
Query: 192 HKAEKLYFRSIEI 204
+ E Y R++EI
Sbjct: 170 EEVEYYYQRALEI 182
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-19
Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ G ++ VA + LA G++ E+ ++A++ + +L ++H
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYG----KRGKYKEAEPLCKRALEIREKVLGKDHP 150
Query: 78 LLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGENNVQTAK 133
++A N L + Y+E E +Q AL + G ++ AK
Sbjct: 151 --------------DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196
Query: 134 HYGNIGRLYQSMQKFDEAERMQLKAIAI-KEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192
N+ Y KF +AE + + + E+ G D E H +
Sbjct: 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE-ECKGKQK 255
Query: 193 KAEKLYFRSIEI 204
Sbjct: 256 DGTSFGEYGGWY 267
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 27/199 (13%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
LC + AL++++ + G ++ VA + LA + G++ E + ++A++ ++
Sbjct: 131 EPLCKR-ALEIREKVLGKDHPDVAKQLNNLALLCQ----NQGKYEEVEYYYQRALEIYQT 185
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLS-LKHFG 125
L + +A N L S +K+AE L++ L + + FG
Sbjct: 186 KLGPDDP--------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
+ + + + + K + K D V ++ +L +LY
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALY- 288
Query: 186 YHMLEYHKAEKLYFRSIEI 204
++ AE L ++
Sbjct: 289 RRQGKFEAAETLEEAAMRS 307
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A L E+ + + + + + A + K++ ++
Sbjct: 82 WDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
D + + L L +A++ + R+ +I
Sbjct: 141 --DDQVAIACAFRGLGDLA-QQEKNLLEAQQHWLRARDI 176
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ EA Q + K ++ + +G + + +D A R L+ +
Sbjct: 42 FDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS- 98
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
L +D + +A++ H + A + Y +S+
Sbjct: 99 LPEDPLAASANAYEVATVA-LHFGDLAGARQEYEKSLVY 136
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 9/123 (7%)
Query: 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167
EA + + +G +Y M +FDEA +K
Sbjct: 4 EAHDYALAERQAQAL--LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59
Query: 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI----NDNLKLFSASYSGLEYHYR 223
D ++ + + + A + + E+ ++ SA+ +
Sbjct: 60 GDHTAEHRALHQVGMVE-RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118
Query: 224 DLK 226
Sbjct: 119 HFG 121
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 16/143 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
+G + +RR + + +L + +A+ + +AL +
Sbjct: 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYE-----VATVALHFGD------LAG 125
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A ++ +LV + + ++ V A + +G L Q + EA++ L+A I ++ +
Sbjct: 126 ARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--E 181
Query: 169 DDYEVGLSVGHLASLYNYHMLEY 191
D V + L L +H +
Sbjct: 182 DSEAVNELMTRLNGLE-HHHHHH 203
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-09
Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+++A ++ L L+++ GE V+ A+ ++G Y + +F+ A + +AI +++
Sbjct: 279 FEDAAEHYKRTLALAVE-LGEREVE-AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
D + L + + + + +A K + +++
Sbjct: 337 --GDRIGEARACWSLGNAH-SAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 17/152 (11%), Positives = 47/152 (30%), Gaps = 10/152 (6%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ Q A+ E+ + Y +G Y + +++A + + + + +
Sbjct: 64 CRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN---DNLKLFSASYSGLEYHY 222
D S G+L + M + +A R + + + + L Y
Sbjct: 120 --NDRLGEAKSSGNLGNTL-KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 223 RDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
+ ++ + +E +++
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLL-------LTSAHRVKALILEEIALDSNELI 101
GRF E+ E+ + + L + L L + + K L +
Sbjct: 137 KVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194
Query: 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161
+ A +Q L L + GN+G Y + F A + + I
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGDRGAQ--GRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
+ D + +L + + + ++ A + Y R++ +
Sbjct: 253 AREF--GDRAAERRANSNLGNSH-IFLGQFEDAAEHYKRTLAL 292
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 10/115 (8%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 90 LEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149
+ ++ + + S+ + + + G +
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCR 65
Query: 150 EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
AI +D + L + Y +++ +Y+KA + + + +
Sbjct: 66 AGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAY-FYLGDYNKAMQYHKHDLTL 115
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-08
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+++A + H+ L+++ K FG+ + Y N+G Y + +F+ A K + + ++
Sbjct: 25 FRDAVIAHEQRLLIA-KEFGDKAAE-RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
KD S L + Y + +Y KA + + + I
Sbjct: 83 --KDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAI 118
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-08
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
++ A ++ L+L+ + A+ ++G Y +Q +++A LK +AI +++
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208
KD G + L + Y + + +A + +EI+ +
Sbjct: 123 --KDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISREV 162
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-05
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
+ +GN+G + + F +A + + I ++ D ++ +L + Y + E+
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAY-IFLGEF 65
Query: 192 HKAEKLYFRSIEINDNLK 209
A + Y +++ + LK
Sbjct: 66 ETASEYYKKTLLLARQLK 83
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A L++ L L + + +GN+G + + F +A + + I ++
Sbjct: 159 LQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
D + +L + Y + E+ A + Y +++ +
Sbjct: 217 --GDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLA 253
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ + A+ + E+ + Y +G Y + + +A + + +
Sbjct: 21 CRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
D + G+L + + + +A R ++I+
Sbjct: 77 --GDQLGEAKASGNLGNTL-KVLGNFDEAIVCCQRHLDIS 113
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y++A H L ++ + ++ + + ++G Y ++ D+A K + I +V
Sbjct: 279 YEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190
+ G A+ + +D + L + Y +++ +
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAY-FYLHD 58
Query: 191 YHKAEKLYFRSIEINDNLK 209
Y KA + + + + +
Sbjct: 59 YAKALEYHHHDLTLARTIG 77
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A ++ L L + + +GN+G + + F +A + + I ++
Sbjct: 163 LQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
D + +L + Y + E+ A + Y +++ + LK
Sbjct: 221 --GDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLK 261
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y++A H L ++ + + + + ++G Y ++ D+A K + I +V
Sbjct: 283 YEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY 215
D + +L+ L L Y + + EI+ +L
Sbjct: 341 --GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKL 388
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
SG E A+Q + T + + I ++ N + Y +
Sbjct: 20 CKSGDCRAGVSFFEAAVQ-----------VGTEDLKTLSAIYSQLG---NAYFYLHDYAK 65
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A H + L L+ + + AK GN+G + + FDEA + + I ++
Sbjct: 66 ALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228
D ++ +L ++Y + + + A+ ++++ +L L
Sbjct: 122 DKVGEARALYNLGNVY-HAKGKSFGCPGPQDVGEFPEEVRDALQAA---VDFYEENLSLV 177
Query: 229 SASY--SGLEYDYRGLIHVYECLENFEK 254
+A + + L + + L NF
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRD 205
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 18/191 (9%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y + S +A +A + +K N L A + +L + Y++
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRL--------LQCHSLFATNFLDL---KQYED 202
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A Q A ++ + + NIG S ++++A +AIA+ E+
Sbjct: 203 AISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--N 258
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--KLFSASYSGLEYHYRDLK 226
+ + + ++ Y + + KA + + + + + ++ + + L+ Y
Sbjct: 259 ILPSLPQAYFLITQIH-YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317
Query: 227 LFSASYSGLEY 237
A ++
Sbjct: 318 DEEAIQGFFDF 328
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 58 RRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI----ALDSNELISVQFYKEAELLH 113
R A + + E + L E L+ E + +E L
Sbjct: 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84
Query: 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173
L + K + G +++ A + KA + V KD E
Sbjct: 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEK 142
Query: 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
++ Y Y+M + + + ++ EI +
Sbjct: 143 AEFFFKMSESY-YYMKQTYFSMDYARQAYEIYKEHE 177
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 27/218 (12%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y + S H +A+ ++N + L IA + ++ + Y +
Sbjct: 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRT--------IQSLFVIAGNYDDF---KHYDK 200
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A + AL L++ +N+ A NI Y A KA + + K
Sbjct: 201 ALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---K 255
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--KLFSASYSGLEYHYRDLK 226
+ + L+ + KA + ++ K + + L+ Y
Sbjct: 256 VPDLLPKVLFGLSWTL-CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY---- 310
Query: 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSE 264
+ E L+ +E + +
Sbjct: 311 ----KETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 18/195 (9%)
Query: 39 ELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL-PENHLLLTSAHRVKALILEEIALDS 97
+ L ++ G+ +R + ++T + LL + + + +
Sbjct: 59 CFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQ---- 114
Query: 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157
+ Y EA ++ A ++++ A+ + + Y M++ + L+
Sbjct: 115 ------KEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI---NDNLKLFSAS 214
A+ I + S+ +A Y Y KA ++E+ N + + S
Sbjct: 167 ALDIYQN-HPLYSIRTIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224
Query: 215 YSGLEYHYRDLKLFS 229
+ Y
Sbjct: 225 LLNIANSYDRSGDDQ 239
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 5e-05
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116
+ E+ + + ++ N L + + +L+ + I++ +EA
Sbjct: 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAM---DACINLGLLEEALFYGTRT 355
Query: 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169
+ F ++ +G+L F +A + A I G++
Sbjct: 356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 56/329 (17%), Positives = 112/329 (34%), Gaps = 83/329 (25%)
Query: 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVA-IAE---DELAYALYVNEYSSGRFTESRR 59
K +LLK L C L ++VL + +++ IAE D LA + + T
Sbjct: 304 KSLLLKYLD-CRPQDLP-REVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 60 HAEKAIQT------FKNL--LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111
+ ++ F L P + + + + +LI ++ ++ + +K + L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPS-AHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYS-L 416
Query: 112 LHQNA---------LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ + + L LK EN + A H + Y + FD + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLEN--EYALHRSIVDH-YNIPKTFDSDDLIPPYL---- 469
Query: 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHY 222
D Y Y++ + +H ++IE + + LF + L++ +
Sbjct: 470 ------DQY-----------FYSH--IGHH------LKNIEHPERMTLFRMVF--LDFRF 502
Query: 223 RDLKLFSASYSG------------LEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRE 270
+ K+ S + L++ Y+ I +N K N + ++ E
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKF-YKPYI-----CDNDPKYERLVNAILDFLPKIE 556
Query: 271 TNELNEPEC---HIDYAKPSEPLGETMAK 296
N + I E + E K
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 106 YKEAELLHQNA---LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
EA A L S + + A Y +++ ++ ++A+ L+
Sbjct: 7 ISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
+ + + + + +A + ++ +
Sbjct: 67 ANN--RSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVM 105
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 9e-04
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 62 EKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSL 121
+A+Q + + A+ L+ +L+ +A L+Q A +
Sbjct: 93 PEAVQYIEKAS--VMYVENGTPDTAAMALDRAG----KLMEPLDLSKAVHLYQQAAAVFE 146
Query: 122 KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181
E Q A+ G RL QKFDEA K ++ +++ ++
Sbjct: 147 N--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQV 202
Query: 182 SLYNYHMLEYHKAEKLYFRSIEI 204
+ H +Y A+K S I
Sbjct: 203 LVQ-LHRADYVAAQKCVRESYSI 224
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 8e-04
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 47 NEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFY 106
N R + + + ++ + + + ++ ++ + + +Q +
Sbjct: 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAM---GVCLYMQDW 356
Query: 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166
+ A Q + KH+ ++ A + +GRLY ++ E+ KAIAI E
Sbjct: 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416
Query: 167 GKD 169
GKD
Sbjct: 417 GKD 419
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.96 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.94 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.92 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.91 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.9 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.86 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.83 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.8 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.79 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.79 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.76 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.75 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.75 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.75 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.74 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.73 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.73 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.72 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.72 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.72 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.6 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.59 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.57 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.53 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.5 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.46 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.45 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.4 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.38 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.34 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.33 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.32 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.31 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.23 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.15 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.07 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.05 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.05 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.01 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.93 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.25 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.22 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.08 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.81 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.36 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.58 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.48 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 96.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.19 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 96.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.09 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 96.09 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.04 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 96.02 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 96.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.91 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.9 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.5 | |
| 3efz_A | 268 | 14-3-3 protein; 14-3-3, cell regulation, structura | 95.5 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 95.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.17 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.92 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.88 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 94.87 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.43 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.42 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.48 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.45 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 92.39 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 92.13 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.89 | |
| 3efz_A | 268 | 14-3-3 protein; 14-3-3, cell regulation, structura | 90.82 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 90.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.92 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.71 | |
| 3re2_A | 472 | Predicted protein; menin, multiple endocrine neopl | 89.52 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 88.78 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 88.37 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 88.33 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 88.26 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 88.24 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 87.12 | |
| 3u84_A | 550 | Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik | 87.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 85.03 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 82.94 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 80.06 |
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=183.80 Aligned_cols=242 Identities=21% Similarity=0.183 Sum_probs=207.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
.-.+.|+.+|++|++++++..+.++|..+.++..+|.++ ...|++++|+.++++++++.+...++++|....++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY----RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 446789999999999999999989999999999999877 5999999999999999999998888888999999999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+.++++++.+.++..++++|....++.++|.++..+|++++|+.++++++++.+..
T Consensus 91 l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 91 LA----------VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HH----------HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99 77799999999999999999999988888889999999999999999999999999999999999998
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh------hhhhhhhhhhhhH-------------HH--
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK------LFSASYSGLEYHY-------------RD-- 224 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~l~~~~-------------~a-- 224 (303)
.++++|....++.++|.++. .+|++++|+.++++++.+.+..+ .....+..++... ++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYL-KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred cCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 88889999999999999997 99999999999999999876422 1222222222111 11
Q ss_pred -HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 -LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 -~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....+..+|....++..+|.+|...|++++|..+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13334456788889999999999999999999965443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-23 Score=172.50 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=203.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
....++.|..++++++++.....++++|..+.++..+|.++ ...|++++|+.++++++++.+...+++++....++
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY----RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34567899999999999999988788999999999999877 59999999999999999999887777788889999
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.++| .++...|++++|+.++++++++.++..+++++....++.++|.++...|++++|+.++++++++.+
T Consensus 115 ~~l~----------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 115 NNLA----------VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHH----------HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999 777999999999999999999998887888899999999999999999999999999999999998
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh------hhhhhhhhhhhhH-------------H-
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK------LFSASYSGLEYHY-------------R- 223 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~l~~~~-------------~- 223 (303)
...++++|....++..+|.++. ..|++++|+.++++++.+.+... .....+.....+. +
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 8888888999999999999997 99999999999999999876321 1111111111111 0
Q ss_pred --HHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 224 --DLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 224 --a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
........+|....++..+|.+|...|++++|.++++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112223356778889999999999999999999965444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=173.56 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=194.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+..|++|+++.+.. ++++..+.++..+|.++ ...|++++|+.++++|+++.+.. +...+..+.++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~ 188 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESY----YYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHS 188 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 345677888888888776553 56677899999999877 59999999999999999999875 223667889999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .+|...|++++|+.++++++++.++. ++++..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 189 ~lg----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 189 LFA----------TNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 999 77799999999999999999998875 567788899999999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--hhhhhhhhhhh-------hh---hHHHHhhhc--c
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--LKLFSASYSGL-------EY---HYRDLKLFS--A 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~l-------~~---~~~a~~~~~--~ 230 (303)
. .+.|....++.++|.++. .+|++++|+.++++++.+.+. +|.....+..+ +. +.+|+..+. .
T Consensus 257 ~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 257 S--NILPSLPQAYFLITQIHY-KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp T--TCGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred h--ccchhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence 4 333777899999999997 999999999999999999874 23222222223 22 445553332 3
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhc
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNEL 274 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 274 (303)
..+....++..+|.+|...|++++|.++++.+ ..+.++...
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a---l~~~~~i~~ 374 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKV---EQVRQLIQG 374 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHHHTSCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHhhc
Confidence 34567778899999999999999999966554 344444333
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-22 Score=164.75 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=185.8
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
.++++|..+.++..+|.++ ...|++++|+.++++++++.....+++++....++..+| .++...|+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------~~~~~~g~ 84 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQY----ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA----------LVYRDQNK 84 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----------HHHHHTTC
T ss_pred CCCcchHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHHHHCCC
Confidence 4678899999999999877 599999999999999999988876667788889999999 77799999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+++|+.++++++.+.++..+++++....++.++|.++...|++++|+.++++++++.+...+++++....++.++|.++.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999988877888999999999999999999999999999999999998888888999999999999997
Q ss_pred HhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHH
Q psy4339 186 YHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSE 264 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~ 264 (303)
..|++++|+.++++++.+.. ...+..+|....++..+|.++...|++++|..++ +.+..
T Consensus 165 -~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 165 -NQGKYEEVEYYYQRALEIYQ-------------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp -TTTCHHHHHHHHHHHHHHHH-------------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHHHH-------------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987 5556667788889999999999999999999955 55533
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=169.40 Aligned_cols=242 Identities=17% Similarity=0.048 Sum_probs=190.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+..|++|+++.... ++.+..+.++.++|.++ ...|++++|+.++++|+++.+... ...+..+.++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y----~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~ 186 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAY----YHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLF 186 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHH----HHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHH
Confidence 345677888888888876653 45688999999999877 599999999999999999988742 22456788999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .+|...|++++|++++++++++.++. ++.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 187 ~lg----------~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 187 VIA----------GNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 999 77799999999999999999998765 455677889999999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--hhhhhhhhhhhh-------h---hHHHHhhhcc--
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--LKLFSASYSGLE-------Y---HYRDLKLFSA-- 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~l~-------~---~~~a~~~~~~-- 230 (303)
. .+|....++.++|.++. .+|++++|+.++++++.+.+. ++.....+..++ . +.+|+..+..
T Consensus 255 ~---~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 255 K---VPDLLPKVLFGLSWTLC-KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp H---CGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred h---CChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 4 34666889999999997 999999999999999998774 222222222221 2 4455543322
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKILR 269 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~ 269 (303)
..+.....+..+|.+|...|++++|..++ +++...+.+.
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566778889999999999999999955 5544444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=158.14 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=170.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+.+|+++++++++..+.++|..+.++..+| .++...|++++|+.++++++++.++..++++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILA----------LVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------HHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 578999999999999999999987778888999999999 7779999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|....++.++|.+|..+|++++|+.++++++.+.++..++++|....++.++|.++. ..|++++|+.++++++.+..
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~-- 158 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYA-- 158 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999888888999999999999997 99999999999999999987
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLS 263 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~ 263 (303)
...+..+|....++..+|.++...|++++|..++ +.+.
T Consensus 159 -----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 159 -----------------TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp -----------------HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777888899999999999999999999955 4443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-20 Score=158.57 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=195.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
....++.|+.+|++++++.+.. .+++..+.++..+|.++ ...|++++|+.++++++++.... .+.+....++
T Consensus 98 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 169 (411)
T 4a1s_A 98 YLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTL----KVMGRFDEAAICCERHLTLARQL--GDRLSEGRAL 169 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHH
Confidence 3456788999999999998775 56788999999999877 59999999999999999998875 4567788899
Q ss_pred HHHHHHHHHHhhhhHHHHhhhh-----------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 84 RVKALILEEIALDSNELISVQF-----------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
.++| .+|...|+ +++|+.++++++++.... .+++....++.++|.++..+|
T Consensus 170 ~~l~----------~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 170 YNLG----------NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp HHHH----------HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----------HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcC
Confidence 9999 66689999 999999999999998775 456778889999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---h-------hhhhhh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---L-------FSASYS 216 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-------~~~~~~ 216 (303)
++++|+.++++++++.... .+.+....++.++|.+|. .+|++++|+.++++++.+.+... . ++..+.
T Consensus 238 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998775 455667788999999997 99999999999999999888431 2 233333
Q ss_pred hhhhhHHHH-------hhhc--cccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHH
Q psy4339 217 GLEYHYRDL-------KLFS--ASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILR 269 (303)
Q Consensus 217 ~l~~~~~a~-------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~ 269 (303)
..+.+.+|. .... ...+....++..+|.++...|++++|.. +.+++....+++
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 333344443 2211 1233456789999999999999999999 556665554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=152.69 Aligned_cols=182 Identities=16% Similarity=0.029 Sum_probs=141.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+.++.|+..|++++++ +|..+.++..+|.++ ...|++++|+..+++++++ +|....++.+
T Consensus 19 g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~ 78 (217)
T 2pl2_A 19 GRYDAALTLFERALKE--------NPQDPEALYWLARTQ----LKLGLVNPALENGKTLVAR--------TPRYLGGYMV 78 (217)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 3445555555555543 566778999999877 5999999999999999998 5666788899
Q ss_pred HHHHHHHHhhhhHHHHhh-----------hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV-----------QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+| .++... |++++|+..+++++++ .|....++.++|.++..+|++++|+..
T Consensus 79 lg----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 79 LS----------EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH----------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 99 666788 9999999999999996 355567889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
|++++++. ....++.++|.++. .+|++++|+..|++++++.| .
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~P---------------------------~ 183 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYL-SMGRLDEALAQYAKALEQAP---------------------------K 183 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST---------------------------T
T ss_pred HHHHHhcc---------cchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------C
Confidence 99999873 12456889999997 99999999999999998877 4
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...++.++|.++...|++++|++.++..
T Consensus 184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 184 DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHTC--------------
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5567899999999999999999966554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-19 Score=156.02 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=194.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..++++++++.... .+.|..+.++..+|.++ ...|++++|+.++++++++.... .+.+..+.++.
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 131 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTL----KVLGNFDEAIVCCQRHLDISREL--NDKVGEARALY 131 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHH
Confidence 456788999999999988775 46788899999999877 59999999999999999998875 34455778899
Q ss_pred HHHHHHHHHhhhhHHHHhhhh--------------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQF--------------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
++| .+|...|+ +++|+.++.+++.+.+.. ++++....++.++|.++..
T Consensus 132 ~l~----------~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 132 NLG----------NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HHH----------HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH
Confidence 999 66689999 999999999999998875 5677888999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hhhhhhhhh---
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LFSASYSGL--- 218 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~l--- 218 (303)
+|++++|+.++++++++.... ++++..+.++.++|.++. ..|++++|+.++++++.+.++.+ ....++..+
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 999999999999999998774 555677889999999997 99999999999999999887532 223333333
Q ss_pred ----hhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHHHHH
Q psy4339 219 ----EYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEWKIL 268 (303)
Q Consensus 219 ----~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~~~ 268 (303)
+.+.+|+ ..... +.+....++..+|.++...|++++|..+ .+++......
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3444443 22222 2444678899999999999999999994 5566555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=149.74 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=184.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..++++++++.... .+.+..+.++..+|.++ ...|++++|+.++++++++.... ++.+..+.++.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 127 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTL----KVLGNFDEAIVCCQRHLDISREL--NDKVGEARALY 127 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHH----HHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 456788999999999988876 46778899999999877 59999999999999999998875 34555778889
Q ss_pred HHHHHHHHHhhhhHHHHhhhh--------------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQF--------------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
.+| .++...|+ +++|+.++++++.+.+.. ++.+....++.++|.++..
T Consensus 128 ~l~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 128 NLG----------NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp HHH----------HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence 999 66688999 999999999999988765 4567778899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---hh-------hhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---KL-------FSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~ 214 (303)
.|++++|+.++++++++.... ++++....++.++|.++. ..|++++|+.++++++.+.++. +. ++..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 999999999999999998775 455677889999999997 9999999999999999988742 11 2222
Q ss_pred hhhhhhhHHHH-------hhhc--cccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 215 YSGLEYHYRDL-------KLFS--ASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 215 ~~~l~~~~~a~-------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+...+.+.+|. .... ...+....++..+|.++...|++++|..++ +++
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22333333333 2211 123345667778888888888888888844 444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=176.44 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=152.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
..|+.+.++.+||.++ ..+|++++|+.+|++|+++ +|....++.++| .+|..+|++++
T Consensus 4 s~P~~a~al~nLG~~~----~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg----------~~l~~~g~~~e 61 (723)
T 4gyw_A 4 SCPTHADSLNNLANIK----REQGNIEEAVRLYRKALEV--------FPEFAAAHSNLA----------SVLQQQGKLQE 61 (723)
T ss_dssp --CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCCCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHH
Confidence 4688999999999877 6999999999999999998 566778999999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..|++|+++ .|....++.++|.++..+|++++|+++|++|+++. |....++.++|.+|. .+
T Consensus 62 A~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~-~~ 124 (723)
T 4gyw_A 62 ALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHK-DS 124 (723)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-Hc
Confidence 99999999997 45667889999999999999999999999999874 566788999999997 99
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWK 266 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~ 266 (303)
|++++|+.+|++++++.| +...++.++|.++...|++++|.+ +.+.+....
T Consensus 125 g~~~eAi~~~~~Al~l~P---------------------------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLKP---------------------------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp TCHHHHHHHHHHHHHHCS---------------------------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---------------------------CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999887 566779999999999999999999 555554433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-20 Score=156.36 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=185.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc--------------------HHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR--------------------FTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~--------------------~~~A~~~~~~a 64 (303)
.+-++.|...+++++++.... .+.+..+.++..+|.++ ...|+ +++|+.++.++
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVY----HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH----HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHH----HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788999999999998876 35567788999999877 58999 99999999999
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+.+.... .+.+..+.++.++| .++...|++++|+.++++++.+..+. ++++....++.++|.++..
T Consensus 174 l~~~~~~--~~~~~~~~~~~~la----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 174 LSLVTAL--GDRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH----------HHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--cCcHHHHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence 9998875 45677888999999 77799999999999999999998764 4566777899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---hh-------hhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---KL-------FSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~ 214 (303)
+|++++|+.++++++.+.... ++++....++.++|.++. ..|++++|+.++++++.+.+.. +. ++.+
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999998764 455667889999999997 9999999999999999987743 22 3333
Q ss_pred hhhhhhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 215 YSGLEYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 215 ~~~l~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+...+.+.+|. +.... ..+....++..+|.++...|+...+.. +.+..
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 374 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSEN 374 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 33334444443 22222 245577889999999999999998887 55555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=165.96 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=141.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+|++|+..+++++++.++.+|++||..+.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------EVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|.++.++++||.+|..+|++++|+.++++|+++.+..+|++||.+.....+++.++. .+|++++|+..|.++.+-+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~-e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM-ELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999987644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=151.35 Aligned_cols=180 Identities=17% Similarity=0.260 Sum_probs=156.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc--------------------HHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR--------------------FTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~--------------------~~~A~~~~~~a 64 (303)
...++.|...+.+++++.... .+.+..+.++..+|.++ ...|+ +++|+.+++++
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVY----HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH----HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788999999999998874 45667788999999877 58999 99999999999
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+.+.+.. .+.+....++.++| .++...|++++|+.++++++++.... ++++....++.++|.++..
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 170 LSLVTAL--GDRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCHHHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHH
Confidence 9998775 45566788899999 77799999999999999999998764 4566777899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.|++++|+.++++++.+.... .+++....++..+|.++. ..|++++|+.++++++.+.+.
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764 456667889999999997 999999999999999998874
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-19 Score=154.74 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=189.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENL-QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
...++.|+.+|++++++ .++++ ..+.++..+|.++ ...|++++|+.++++++++.+.. .+.+....++
T Consensus 61 ~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 129 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAY----FYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSS 129 (411)
T ss_dssp TTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHH
Confidence 45677888888888876 33444 4568999999877 58999999999999999998875 4567788999
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhc----------------
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQK---------------- 147 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------------- 147 (303)
..+| .+|...|++++|+.++++++.+..+. .+++....++.++|.+|...|+
T Consensus 130 ~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 130 GNLG----------NTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HHHH----------HHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 9999 77799999999999999999998875 4667888999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---h-------hhhhhh
Q psy4339 148 -FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---L-------FSASYS 216 (303)
Q Consensus 148 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-------~~~~~~ 216 (303)
+++|+.++++++++.+.. .+++....++.++|.++. ..|++++|+.++++++.+.+..+ . ++..+.
T Consensus 198 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYY-LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999998776 556778889999999997 99999999999999999988532 2 233333
Q ss_pred hhhhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHH
Q psy4339 217 GLEYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKIL 268 (303)
Q Consensus 217 ~l~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~ 268 (303)
..+.+.+|+ ..... ..+....++..+|.++...|++++|..++ +.+......
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 334444443 22221 22245788999999999999999999955 555444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-20 Score=152.03 Aligned_cols=215 Identities=12% Similarity=0.069 Sum_probs=173.0
Q ss_pred hhhHhHHHHHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 5 KILLKNLSLCSQLALKLKQV-LF--GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
..-++.|.+++++|.+.... .+ +++.......+...|.++ ...|++++|+.+|.+++++.... .+.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~ 77 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAF----KNAKQLEQAKDAYLQEAEAHANN--RSLFHAAK 77 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHH
Confidence 34567899999999887653 22 345556667788888666 69999999999999999998875 34455788
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++.++| .+|..+|++++|+.+|++++++..+. .+....+.++.++|.+|.. |++++|+.+|++|+++
T Consensus 78 ~~~~lg----------~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 78 AFEQAG----------MMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHH----------HHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 999999 67799999999999999999998764 3445567899999999999 9999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
.... .+.+....++.++|.+|. .+|++++|+.+|++++.+.+ ... ..+....++..
T Consensus 145 ~~~~--~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-------------------~~~--~~~~~~~~~~~ 200 (307)
T 2ifu_A 145 FENE--ERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYK-------------------EME--NYPTCYKKCIA 200 (307)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HTT--CHHHHHHHHHH
T ss_pred HHhC--CChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH-------------------HcC--ChhHHHHHHHH
Confidence 8763 344556788999999997 99999999999999999988 211 12234557788
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++..+|++++|+.+++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888888889999998866544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-20 Score=157.35 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
.+..+|..+ ...|++++|+.++++++++.+.. ++.+..+.++.++| .+|...|++++|+.++++
T Consensus 105 ~~~~~g~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg----------~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 105 FNFFRGMYE----LDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMS----------ESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH----HHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHH
Confidence 444588666 59999999999999999987664 45666889999999 777999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHH
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~ 195 (303)
|+++.++. +...+..+.++.++|.+|..+|++++|+.++++++++.++. ++++..+.++.++|.+|. .+|++++|+
T Consensus 169 al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~-~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN-SQSQYEDAI 244 (383)
T ss_dssp HHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH-HCCCHHHHH
Confidence 99998875 22267788999999999999999999999999999998875 567788889999999997 999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccc-ccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHHH
Q psy4339 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASY-SGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEWK 266 (303)
Q Consensus 196 ~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~ 266 (303)
.++++++.+.+ . ... |....++.++|.++...|++++|.++ .+++....
T Consensus 245 ~~~~~al~~~~-------------------~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 245 PYFKRAIAVFE-------------------E---SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHH-------------------H---TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------h---hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999887 2 223 56788899999999999999999994 45554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-20 Score=150.19 Aligned_cols=211 Identities=12% Similarity=-0.105 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHH------HhCC---C-cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhh
Q psy4339 10 NLSLCSQLALKLKQV------LFGS---E-NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL 79 (303)
Q Consensus 10 ~a~~~~~~al~~~~~------~~~~---~-~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (303)
.|.+++.+|.+..+. .++. + .......+...|.++ ...|+|++|+.+|.+++++.... .+.+..
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 76 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIY----RLRKELNLAGDSFLKAADYQKKA--GNEDEA 76 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHH----HHTTCTHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence 466667777666542 3332 2 233456677777655 68999999999999999998775 344557
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKA 158 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a 158 (303)
+.++.++| .+|...|++++|+.+|++|+.+..+. ++....+.++.++|.+|... |++++|+.+|++|
T Consensus 77 a~~~~~lg----------~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 77 GNTYVEAY----------KCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 88999999 77799999999999999999998764 34555678899999999996 9999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
+++.... .+.+....++.++|.++. .+|++++|+.+|++++.+.+ .. .........+
T Consensus 145 l~~~~~~--~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-------------------~~-~~~~~~~~~~ 201 (292)
T 1qqe_A 145 GEWYAQD--QSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSM-------------------GN-RLSQWSLKDY 201 (292)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTS-------------------SC-TTTGGGHHHH
T ss_pred HHHHHhC--CChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHh-------------------cC-CcccHHHHHH
Confidence 9998653 233445678999999997 99999999999999999887 11 1111234457
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+.++|.++...|++++|+.+++.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88999999999999999995543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=162.58 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=138.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+..+|+|++|+..+++++++.++.+|++||.++.++++||.+|..+|+|++|+.++++++++.++.+|++||.++.++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++||.+|. .+|++++|+.++++|+.+.. ..+|++||.+.....+++.++..+|.+++|..
T Consensus 397 ~nLa~~~~-~~G~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 397 MRAGLTNW-HAGHIEVGHGMICKAYAILL-------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHHH-------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 99999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
.++.+
T Consensus 457 ~~~~~ 461 (490)
T 3n71_A 457 MYHKM 461 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-20 Score=155.57 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
...+..+|..+ ...|++++|+.+|++|+++.+.. ++.+..+.++.++| .+|...|++++|+.++
T Consensus 101 ~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg----------~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 101 YYSLFFRGMYE----FDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVA----------EAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHH----------HHHHHcCCcHHHHHHH
Confidence 34667788655 69999999999999999987764 45677889999999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~ 193 (303)
++|+++.++.. ...+..+.++.++|.+|..+|++++|++++++++++.++. ++.+..+.++.++|.+|. .+|++++
T Consensus 165 ~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~-~~~~~~~ 240 (378)
T 3q15_A 165 LQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYD-RSGDDQM 240 (378)
T ss_dssp HHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH-HCCCHHH
Confidence 99999987641 2245678899999999999999999999999999998775 455677889999999997 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+.++++++.+.+ . ..+|....++.++|.++...|++++|..+++..
T Consensus 241 A~~~~~~al~~~~-------------------~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 241 AVEHFQKAAKVSR-------------------E---KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHH-------------------H---HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------h---hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887 2 244556888999999999999999999955443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=142.01 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
+.+.++.++|.++ ..+|+|++|+.+|++++++ +|....++..+| .+|...|++++|+.
T Consensus 3 e~~~iy~~lG~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la----------~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 3 ETTTIYMDIGDKK----RTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLG----------KTYMDIGLPNDAIE 60 (184)
T ss_dssp -CHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHCCCHHHHHH
Confidence 3467899999887 6999999999999999988 566678899999 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+.+++.. .|....++..+|.++...+++++|...+.+++.+. |....++..+|.++. .+|++
T Consensus 61 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~-~~g~~ 123 (184)
T 3vtx_A 61 SLKKFVVL--------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYD-SMGEH 123 (184)
T ss_dssp HHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHhc--------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHH-HhCCc
Confidence 99999885 33445678899999999999999999999998764 445567899999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
++|+..|++++++.| ....++.++|.+|..+|++++|++++ +++
T Consensus 124 ~~A~~~~~~~l~~~p---------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 124 DKAIEAYEKTISIKP---------------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcc---------------------------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999998877 45667999999999999999999955 444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=151.70 Aligned_cols=221 Identities=10% Similarity=-0.057 Sum_probs=158.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+.+|+++++. .|..+.++..+|.++ ...|++++|+.+|++++++ +|....++.
T Consensus 78 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 137 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQ----AENENEQAAIVALQRCLEL--------QPNNLKALM 137 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 44567777778877765 355678899999877 5999999999999999987 455567889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV--QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++| .+|...|++++|+.++++++++.......... .....+..+|.++...|++++|+.++++++++.
T Consensus 138 ~l~----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 138 ALA----------VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHH----------HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 999 77799999999999999999974432111000 123445667999999999999999999998863
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccccH
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYSGL 235 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~~~ 235 (303)
++.. ...++.++|.++. ..|++++|+.++++++++.|+++ .++.++...+.+.+|+..+ ...+|..
T Consensus 208 -----p~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 208 -----GDMI-DPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp -----CSSC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -----cCcc-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 2210 3457889999997 99999999999999999888654 2455555555555665322 2235666
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 236 EYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..++.++|.++...|++++|..+++.+
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788999999999999999999955444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-19 Score=144.78 Aligned_cols=211 Identities=12% Similarity=-0.065 Sum_probs=157.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|...|.+|+++..+. .+.+..+.++.++|.++ ..+|++++|+.+|++|+++.... ++....+.++.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~ 121 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCF----KSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKF 121 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 345678888888888887764 34556789999999877 69999999999999999998764 33444678899
Q ss_pred HHHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
++| .+|... |++++|+.+|++|+++.+.. .+.+....++.++|.++..+|++++|+.+|++++++..
T Consensus 122 ~lg----------~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 122 ELG----------EILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHH----------HHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHH----------HHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999 666886 99999999999999998753 23334567899999999999999999999999998752
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
.. +........++.++|.++. .+|++++|+.++++++.+.| ... .......+..++
T Consensus 190 ~~-~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p-------------------~~~---~~~~~~~l~~l~ 245 (292)
T 1qqe_A 190 GN-RLSQWSLKDYFLKKGLCQL-AATDAVAAARTLQEGQSEDP-------------------NFA---DSRESNFLKSLI 245 (292)
T ss_dssp SC-TTTGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHGGGCC-------------------------------HHHHHHHH
T ss_pred cC-CcccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC-------------------CCC---CcHHHHHHHHHH
Confidence 21 0001134557899999997 99999999999999999888 211 111223455566
Q ss_pred HHHH--hhhcHHHHHHHH
Q psy4339 244 HVYE--CLENFEKMTEFT 259 (303)
Q Consensus 244 ~~~~--~~g~~~~A~~~~ 259 (303)
..+. ..+++++|+..+
T Consensus 246 ~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHTTCTTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 6664 456677777643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=152.66 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++..+|.++ ...|++++|+..|++++++ +|....++.++| .++...|++++|+..
T Consensus 168 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 168 FAVAWSNLGCVF----NAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLG----------NVLKEARIFDRAVAA 225 (388)
T ss_dssp CHHHHHHHHHHH----HTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHTTTCTTHHHHH
T ss_pred CHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 344555555444 3555555555555555554 233344555555 444666666666666
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++.+ +|....++.++|.++...|++++|+.++++++++. |....++.++|.++. ..|+++
T Consensus 226 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~-~~g~~~ 288 (388)
T 1w3b_A 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALK-EKGSVA 288 (388)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHH-HHSCHH
T ss_pred HHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HcCCHH
Confidence 6666654 23445667788888888888888888888887642 334456788888887 889999
Q ss_pred HHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+.++++++++.|+++. ++..+...+.+.+|+..+ ....|....++..+|.++...|++++|+.+++.+
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888888775542 344444445555555322 2345667778899999999999999999955444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=140.81 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+.++..+|.++ ...|++++|+..|+++++. +|....++.++| .++...|++++|+
T Consensus 2 p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg----------~~~~~~g~~~~A~ 59 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL----YALGRYDAALTLFERALKE--------NPQDPEALYWLA----------RTQLKLGLVNPAL 59 (217)
T ss_dssp --CCHHHHHHHHHH----HHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHH
Confidence 34456889999877 5999999999999999876 566678899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
..+++++++ .|....++.++|.++..+ |++++|+..+++++++. |....++.+
T Consensus 60 ~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~ 123 (217)
T 2pl2_A 60 ENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHH
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHH
Confidence 999999996 355667899999999999 99999999999999874 555678899
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 180 LASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|.++. .+|++++|+..|++++++.. ...++.++|.++...|++++|+..+
T Consensus 124 lg~~~~-~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 124 RGLVYA-LLGERDKAEASLKQALALED----------------------------TPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH-HcCChHHHHHHHHHHHhccc----------------------------chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999997 99999999999999986532 3456889999999999999999955
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 175 ~~a 177 (217)
T 2pl2_A 175 AKA 177 (217)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=151.88 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|++++|+..|++++.. .|....++.++|.++...|++++|+.+|++++++. |....++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~ 206 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------PNFLDAY 206 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHH
Confidence 3445556666666666655553 23334455666666666666666666666665542 2223344
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|.++. ..|++++|+..+++++.+.|
T Consensus 207 ~~lg~~~~-~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 207 INLGNVLK-EARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHH-TTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 44454444 44555555555554444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-18 Score=141.01 Aligned_cols=176 Identities=18% Similarity=0.036 Sum_probs=147.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|.+++++..+. .+.+..+.++.++|.++ ..+|++++|+.+|++++++.... .+....+.++.+
T Consensus 50 g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~ 121 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMML----KDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDR 121 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 45678888889999888764 34567788999999777 68999999999999999998764 333456788999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .+|.. |++++|+.+|++|+++.+.. .+......++.++|.+|..+|++++|+.+|++++.+....
T Consensus 122 lg----------~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 122 AG----------KLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HH----------HHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HH----------HHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 99 66678 99999999999999998763 3344567899999999999999999999999999998764
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.....+.++|.++. .+|++++|+.+|++++ +.|
T Consensus 189 --~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 189 --ENYPTCYKKCIAQVLVQL-HRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp --TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHT-TST
T ss_pred --CChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHh-CCC
Confidence 234556678899999997 9999999999999999 877
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-18 Score=137.20 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=153.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+.+|+++++.. ..+.++..+|.++ ...|++++|+.++++++++.... .++.+....++.
T Consensus 18 ~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~----~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 83 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH---------KDITYLNNRAAAE----YEKGEYETAISTLNDAVEQGREM-RADYKVISKSFA 83 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHH----HHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHH
Confidence 445677888888887762 2246889999877 59999999999999999987653 234444578899
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH-------------------HhhCCCcHHHHHHHHHHHHHHHHh
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSL-------------------KHFGENNVQTAKHYGNIGRLYQSM 145 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~ 145 (303)
.+| .++...|++++|+.++++++.+.. +.. ...|....++..+|.++...
T Consensus 84 ~l~----------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIG----------NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHT
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHh
Confidence 999 777999999999999999998421 110 13566677888888888888
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~ 225 (303)
|++++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++...|
T Consensus 153 ~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~------------------- 204 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDP------------------- 204 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------
T ss_pred cCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCH-------------------
Confidence 88888888888888753 333467788888886 88888888888888887766
Q ss_pred hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHH
Q psy4339 226 KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLS 263 (303)
Q Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~ 263 (303)
....++..+|.++...|++++|..++ +.+.
T Consensus 205 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 205 --------NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44567899999999999999999955 4443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-19 Score=149.91 Aligned_cols=208 Identities=10% Similarity=-0.033 Sum_probs=163.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc-HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR-FTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
-++.|+..|++++++ +|....++.++|.++ ...|+ +++|+.+|++++++ +|....++++
T Consensus 112 ~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l----~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~ 171 (382)
T 2h6f_A 112 RSERAFKLTRDAIEL--------NAANYTVWHFRRVLL----KSLQKDLHEEMNYITAIIEE--------QPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHh--------CccCHHHHHHHHHHH----HHcccCHHHHHHHHHHHHHH--------CCCCHHHHHH
Confidence 356677777777766 577778999999877 58996 99999999999998 5667789999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.++++++++.
T Consensus 172 ~g----------~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--- 230 (382)
T 2h6f_A 172 RR----------VLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--- 230 (382)
T ss_dssp HH----------HHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---
T ss_pred HH----------HHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 99 6668999999999999999996 45667889999999999999999999999999874
Q ss_pred cCCCchHHHHHHHHHHHHHHHh-hcCHHHH-----HHHHHHHHHhhhhhhh----hhhhhhhhh--hhHHHH---hhhcc
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYH-MLEYHKA-----EKLYFRSIEINDNLKL----FSASYSGLE--YHYRDL---KLFSA 230 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~----~~~~~~~l~--~~~~a~---~~~~~ 230 (303)
|....+++++|.++. . .|.+++| +.++++++.+.|+++. .+.++...+ .+.+++ ... .
T Consensus 231 -----P~~~~a~~~lg~~l~-~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 231 -----VRNNSVWNQRYFVIS-NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp -----TTCHHHHHHHHHHHH-HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred -----CCCHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 566778999999997 8 5555788 5999999999886553 233333322 234443 223 5
Q ss_pred ccccHHHHHHhHHHHHHhhh--------c-HHHHHHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLE--------N-FEKMTEFTNKL 262 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~~ 262 (303)
..|....++..+|.+|..+| + +++|+++++.+
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 56777888999999999985 3 58888866554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=131.55 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=135.6
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
...+-++.|+..|++++++ +|..+.++..+|.++ ...|++++|+..+.+++.. .|....+
T Consensus 16 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~----~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 75 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTY----MDIGLPNDAIESLKKFVVL--------DTTSAEA 75 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CchhHHH
Confidence 3456788899999999877 566678999999877 6999999999999999876 3445577
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| ..+...++++.|...+.+++.. .|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 76 ~~~~~----------~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 76 YYILG----------SANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 77888 6668999999999999999986 34455678899999999999999999999999873
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|....++.++|.+|. .+|++++|+.+|++++++.|++
T Consensus 138 --------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 --------PGFIRAYQSIGLAYE-GKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTHHH
T ss_pred --------chhhhHHHHHHHHHH-HCCCHHHHHHHHHHHHhCCccC
Confidence 555678999999997 9999999999999999998843
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=141.02 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+...+..+ ...|+|++|+..+.++++.... ....+.....+..+| ..+...|++++|+
T Consensus 72 ~~~~~~l~~~~~~~----~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~~~A~ 135 (293)
T 2qfc_A 72 IERKKQFKDQVIML----CKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVA----------AYVLKKVDYEYCI 135 (293)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHH----------HHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHH----------HHHhcCCCHHHHH
Confidence 44555666677666 5999999999999999886321 112223445566677 6668999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhc
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHML 189 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g 189 (303)
.++++++....+. .+......++.++|.+|..+|++++|+.++++++++.+.. ++.+. ...+++++|.+|. .+|
T Consensus 136 ~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~-~~~ 210 (293)
T 2qfc_A 136 LELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALY-LDS 210 (293)
T ss_dssp HHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHH-HHh
Confidence 9999999875432 2334457799999999999999999999999999988764 23333 3378999999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHH-HHHH-HHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM-TEFT-NKLSEWK 266 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~-~~~~~~~ 266 (303)
++++|+.++++++.+.+ . .......+.++.++|.+|...|++++| ..++ +++...+
T Consensus 211 ~y~~Al~~~~kal~~~~-------------------~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISC-------------------R--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp CHHHHHHHHHHHHHHHH-------------------H--TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-------------------h--cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999887 2 233445678899999999999999999 6644 5554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=150.23 Aligned_cols=211 Identities=13% Similarity=0.032 Sum_probs=158.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-NHLLLTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
.+++..+.+++.||.++ ..+|++++|+.+|++|+++.+...+. .+|..+.++.++| .+|..+|++
T Consensus 45 ~~~~~~a~~yn~Lg~~~----~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla----------~~y~~~g~~ 110 (472)
T 4g1t_A 45 QNREFKATMCNLLAYLK----HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYA----------WVYYHMGRL 110 (472)
T ss_dssp CC---CCHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHH----------HHHHHTTCH
T ss_pred CCChhHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH----------HHHHHcCCh
Confidence 34555678899999888 58999999999999999998776443 3567888999999 667999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
++|+.++++++++.+...++.++..+.++.++|.++... ++|++|+.+|++++++. +++|. ++..+|.++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~~---~~~~~~~~~ 182 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNPE---FTSGLAIAS 182 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Confidence 999999999999998877666777788899999887765 57999999999999874 44444 455555554
Q ss_pred ---HHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhh----hhhHHHH---hhhccccccHHHHHHhHHHHHHhhh
Q psy4339 185 ---NYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGL----EYHYRDL---KLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 185 ---~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l----~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
. ..++.++|+..+++++++.|+++.. +..+..+ +...+|. +.....+|....++.++|.+|...|
T Consensus 183 ~~l~-~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 183 YRLD-NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHH-HSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHhc-CchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 3 5677889999999999998865532 2222221 2222333 2222345677788999999999999
Q ss_pred cHHHHHHHHHH
Q psy4339 251 NFEKMTEFTNK 261 (303)
Q Consensus 251 ~~~~A~~~~~~ 261 (303)
++++|+.+++.
T Consensus 262 ~~~~A~~~~~~ 272 (472)
T 4g1t_A 262 EPDKAIELLKK 272 (472)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999995443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-18 Score=139.05 Aligned_cols=196 Identities=13% Similarity=0.015 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh---hHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL---LTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
+.....+...+..+ ...|+|++|+..++++++.. +..+. ....+..+| ..+...|+++
T Consensus 72 ~~~~~~l~~~i~~~----~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~----------~~~~~~~~~~ 132 (293)
T 3u3w_A 72 IERKKQFKDQVIML----CKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVA----------AYVLKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHH----------HHHTTSSCHH
T ss_pred chhHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHH----------HHHHcccCHH
Confidence 34444555555455 58999999999999988742 22232 244555677 6668889999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.+++++++..+.. +.+.+..+.+++++|.+|. .
T Consensus 133 ~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~-~ 208 (293)
T 3u3w_A 133 YCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALY-L 208 (293)
T ss_dssp HHHHHHHHHHHTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHH-H
Confidence 9999999999964321 2334456789999999999999999999999999988764 3466788889999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc-HHHHHH-HHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN-FEKMTE-FTNKLSEW 265 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~-~~~~~~~~ 265 (303)
+|++++|+.++++++++.+ + ....+..+.++.++|.+|..+|+ +++|.+ +.+++..+
T Consensus 209 ~~~y~~A~~~~~~al~~~~-------------------~--~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISC-------------------R--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHH-------------------H--TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH-------------------H--cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999988 2 23344678899999999999995 699999 55666666
Q ss_pred HHHHh
Q psy4339 266 KILRE 270 (303)
Q Consensus 266 ~~~~~ 270 (303)
+..++
T Consensus 268 ~~~~~ 272 (293)
T 3u3w_A 268 DILEM 272 (293)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 55544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=136.86 Aligned_cols=192 Identities=16% Similarity=0.044 Sum_probs=151.4
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-++.|+..|+++++. .+++|....++..+|.++ ...|++++|+..|+++++.. ++++....++..+
T Consensus 30 ~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l 95 (261)
T 3qky_A 30 KYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAY----YQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYER 95 (261)
T ss_dssp CHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHH----HHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHH
Confidence 344444444444433 345556689999999888 59999999999999999883 4456677889999
Q ss_pred HHHHHHHhhhhHHHHh--------hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH--------------HHHHHHHHH
Q psy4339 87 ALILEEIALDSNELIS--------VQFYKEAELLHQNALVLSLKHFGENNVQTAKHY--------------GNIGRLYQS 144 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~~~~~ 144 (303)
| .++.. .|++++|+..|+++++.. ++++....+. ..+|.+|..
T Consensus 96 g----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 96 A----------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp H----------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 66678 999999999999999964 3344444444 899999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM----------LEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
+|++++|+..|+++++.. ++++....++..+|.+|. .+ |++++|+..|+++++..|
T Consensus 161 ~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp TTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred ccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 999999999999999864 555667889999999996 88 999999999999999888
Q ss_pred hhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 215 YSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 215 ~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++....+...++.++...|+++++..
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 445566677788888888887766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=144.39 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=154.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+.+|+++++. +|..+.++..+|.++ ...|++++|+.++++++++ .|....++..
T Consensus 78 g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~ 137 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQ----AENEQELLAISALRRCLEL--------KPDNQTALMA 137 (368)
T ss_dssp TCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCcCHHHHHHHHHHHHhc--------CCCCHHHHHH
Confidence 3455666666666544 455667899999877 5999999999999999987 3455678888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH-------------HHHHHHHHHHHHHhhcHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT-------------AKHYGNIGRLYQSMQKFDEAE 152 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~ 152 (303)
+| .++...|++++|+..+++++.... +.+.. ......+|.++ ..|++++|+
T Consensus 138 l~----------~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~ 201 (368)
T 1fch_A 138 LA----------VSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK 201 (368)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHH
T ss_pred HH----------HHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH
Confidence 99 666899999999999999988532 21111 11122566666 889999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~ 228 (303)
.++++++++. ++.+ ...++..+|.++. ..|++++|+.++++++.+.|+++. ++.++...+.+.+|+..+
T Consensus 202 ~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 202 ELFLAAVRLD-----PTSI-DPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHS-----TTSC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC-----cCcc-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999888763 2211 4567888999997 899999999999999888775442 444444555555554322
Q ss_pred c---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 S---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
. ...|....++..+|.++...|++++|..+++.+
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 234566778999999999999999999955444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=127.79 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=136.6
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.++++++++.+.. .+.+..+.++.++| .++...|++++
T Consensus 21 ~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~----------~~~~~~g~~~~ 84 (203)
T 3gw4_A 21 HPATASGARFMLGYVY----AFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVG----------MVERMAGNWDA 84 (203)
T ss_dssp STTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH----------HHHHHTTCHHH
T ss_pred ChHHHHHHHHHHHHHH----HHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH----------HHHHHcCCHHH
Confidence 3446788999999877 59999999999999999998875 45667888999999 67799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.++++++++.+.. +.++.....++.++|.++..+|++++|+.++++++.+.+.. .+......++.++|.++. ..
T Consensus 85 A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~ 160 (203)
T 3gw4_A 85 ARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQ-QE 160 (203)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH-HC
Confidence 999999999998853 22334778899999999999999999999999999987664 444556778899999997 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|..++++++.+.+
T Consensus 161 g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999988
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-18 Score=137.05 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.|..+..+..+|..+ ...|+|++|+..|+++++. .++++....++..+| .+|...|++++|
T Consensus 11 ~~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg----------~~~~~~~~~~~A 71 (261)
T 3qky_A 11 RHSSPQEAFERAMEF----YNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLA----------RAYYQNKEYLLA 71 (261)
T ss_dssp CCSSHHHHHHHHHHH----HHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHH----------HHHHHhCcHHHH
Confidence 345567899999887 5999999999999999876 244555578999999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH--------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH----
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS--------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV---- 177 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---- 177 (303)
+..|+++++.. ++++....++..+|.++.. +|++++|+..|+++++.. ++++....+.
T Consensus 72 ~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 72 ASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIR 141 (261)
T ss_dssp HHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHH
Confidence 99999999973 4566777899999999999 999999999999999875 4445555554
Q ss_pred ----------HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 178 ----------GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 178 ----------~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
..+|.+|. ..|++++|+..|+++++..| .++....++..+|.+|.
T Consensus 142 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p------------------------~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYE-RRELYEAAAVTYEAVFDAYP------------------------DTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT------------------------TSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCC------------------------CCchHHHHHHHHHHHHH
Confidence 89999997 99999999999999998877 33456778999999999
Q ss_pred hh----------hcHHHHHHHHHHH
Q psy4339 248 CL----------ENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~----------g~~~~A~~~~~~~ 262 (303)
.. |++++|+..++.+
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HhcccchhhcccchHHHHHHHHHHH
Confidence 77 8889999955444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=150.76 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
+.|+..|++++++ +|..+.++..+|.++ ...|++++|+.+|++++++ .|. ..++.++|
T Consensus 120 ~~A~~~~~~al~~--------~p~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg- 177 (474)
T 4abn_A 120 PEAEVLLSKAVKL--------EPELVEAWNQLGEVY----WKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLS- 177 (474)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHH-
T ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHH-
Confidence 6778888888776 455677999999877 5899999999999999876 233 47888899
Q ss_pred HHHHHhhhhHHHHhh---------hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHH
Q psy4339 89 ILEEIALDSNELISV---------QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEA 151 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A 151 (303)
.++... |++++|+..|++++++ .|....++.++|.+|..+ |++++|
T Consensus 178 ---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 178 ---------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp ---------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ---------HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 666888 9999999999999996 345567899999999999 999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
+.+|++++++. +..+....++.++|.+|. .+|++++|+.+|++++++.|
T Consensus 241 ~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p------------------------- 289 (474)
T 4abn_A 241 LSAYAQAEKVD-----RKASSNPDLHLNRATLHK-YEESYGEALEGFSQAAALDP------------------------- 289 (474)
T ss_dssp HHHHHHHHHHC-----GGGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------------
T ss_pred HHHHHHHHHhC-----CCcccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-------------------------
Confidence 99999999874 111267788999999997 99999999999999999887
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
....++..++.++...|++++|++.+
T Consensus 290 --~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 290 --AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999844
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=148.29 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=117.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+|++|+..+++++++.++.+|++||.++.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa----------~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAM----------GVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHH----------HHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 357899999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
|.++..+++||.+|..+|++++|+.++++|+++.+..+|++||.+..+..+|.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988877764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=146.38 Aligned_cols=194 Identities=8% Similarity=-0.059 Sum_probs=157.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh-HH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF-YK 107 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~-~~ 107 (303)
-+|....++..+|.++ ...|++++|+..|++++++ +|....+++++| .++...|+ ++
T Consensus 92 ~~p~~~~a~~~lg~~~----~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g----------~~l~~~g~d~~ 149 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVL----QRDERSERAFKLTRDAIEL--------NAANYTVWHFRR----------VLLKSLQKDLH 149 (382)
T ss_dssp CCHHHHHHHHHHHHHH----HHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCCHH
T ss_pred CChhhHHHHHHHHHHH----HHCCChHHHHHHHHHHHHh--------CccCHHHHHHHH----------HHHHHcccCHH
Confidence 3578899999999777 6999999999999999988 677788999999 66689997 99
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+..|++++.+ +|....++.++|.++..+|++++|+.+|++++++. |....++.++|.++. .
T Consensus 150 eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~-~ 212 (382)
T 2h6f_A 150 EEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQ-E 212 (382)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHH-H
Confidence 999999999996 45667789999999999999999999999999874 566788999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhh-hhhHHH--------HhhhccccccHHHHHHhHHHHHHhhh--cH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKL----FSASYSGL-EYHYRD--------LKLFSASYSGLEYDYRGLIHVYECLE--NF 252 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l-~~~~~a--------~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 252 (303)
+|++++|+.++++++.+.++++. .+.++..+ +...+| +...-...|....++.++|.++...| ++
T Consensus 213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 99999999999999999886542 34444442 221222 11122235667778999999999988 68
Q ss_pred HHHHHHHHH
Q psy4339 253 EKMTEFTNK 261 (303)
Q Consensus 253 ~~A~~~~~~ 261 (303)
++|+++.+.
T Consensus 293 ~~a~~~~~~ 301 (382)
T 2h6f_A 293 PNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888875433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=148.13 Aligned_cols=123 Identities=15% Similarity=-0.003 Sum_probs=117.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|+|++|+..+++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||.++..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
|.+|. .+|++++|+.++++|+++.. ..+|++||.+..+..+|.
T Consensus 389 a~~~~-~qg~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYM-GLENKAAGEKALKKAIAIME-------------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHH-hccCHHHHHHHHHHHHHHHH-------------------HHcCCCChHHHHHHHHHh
Confidence 99997 99999999999999999999 899999999888777664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=142.43 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...++..+|.++ ...|++++|+..++++++. .|....++..+| .++...|++++|+.+
T Consensus 124 ~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 124 YGPAWIAYGHSF----AVESEHDQAMAAYFTAAQL--------MKGCHLPMLYIG----------LEYGLTNNSKLAERF 181 (330)
T ss_dssp CTHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------TTTCSHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------ccccHHHHHHHH----------HHHHHHhhHHHHHHH
Confidence 344556666555 3666666666666666655 222234444456 555777777777777
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHhhcCH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD-YEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~g~~ 191 (303)
+++++.. .|....++..+|.++...|++++|+.++++++++......... |....++.++|.++. ..|++
T Consensus 182 ~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~ 252 (330)
T 3hym_B 182 FSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 252 (330)
T ss_dssp HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCH
Confidence 7777764 3444677899999999999999999999999998755422221 444578899999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++|+.++++++++.+ ....++..+|.++...|++++|.++++.+
T Consensus 253 ~~A~~~~~~a~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 253 AEALDYHRQALVLIP---------------------------QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHHHST---------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCc---------------------------cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999998877 33456889999999999999999965443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-18 Score=148.16 Aligned_cols=187 Identities=14% Similarity=0.036 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
....-++++++.+..... ..|..+.++..+|.++ ...|++ ++|+.+|++++++ +|....++..+|
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~----~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg- 144 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKAL----NVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLG- 144 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH----TSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH----HhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHH-
Confidence 455556777777766543 4456788999999877 599999 9999999999987 456678899999
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHH
Q psy4339 89 ILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAI 159 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al 159 (303)
.+|...|++++|+.+|++++++ .|. ..++.++|.++..+ |++++|+.++++++
T Consensus 145 ---------~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 145 ---------EVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp ---------HHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 7779999999999999999985 233 47899999999999 99999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHM--------LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
++. |....++.++|.+|. .+ |++++|+.+|++++.+.| .
T Consensus 207 ~~~--------p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p-------------------~----- 253 (474)
T 4abn_A 207 QMD--------VLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDR-------------------K----- 253 (474)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCG-------------------G-----
T ss_pred HhC--------CCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCC-------------------C-----
Confidence 874 555678999999997 99 999999999999998876 1
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
.+....++.++|.+|...|++++|+++++.
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 335567799999999999999999995543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=132.48 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|+|++|+.+|++++++.. +....++.++| .++...|++++|+.+++
T Consensus 8 ~~~~~~g~~~----~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 8 NQLKNEGNDA----LNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCG----------VCADNIKKYKEAADYFD 66 (228)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHH----------HHHHHhhcHHHHHHHHH
Confidence 7899999877 599999999999999998821 02335667789 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHhhcC
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY----EVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~g~ 190 (303)
+++.. .|....++.++|.+|..+|++++|+.++++++++. ++++ ..+.++.++|.++. ..|+
T Consensus 67 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~-~~~~ 132 (228)
T 4i17_A 67 IAIKK--------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQ-QAGN 132 (228)
T ss_dssp HHHHT--------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHh--------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHH-Hhcc
Confidence 99974 45567789999999999999999999999999875 3333 23467999999997 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
+++|+.+|++++++.|
T Consensus 133 ~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 133 IEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998877
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=148.01 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=160.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGS-ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
...+..+.|++.|++|+++.+...+. .+|..+.++.++|.+| ..+|++++|+.++++++++.+...++.++..+.
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y----~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY----YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34567899999999999998876543 4677889999999888 599999999999999999999887777777888
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---HhhcHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQ---SMQKFDEAERMQLKA 158 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~a 158 (303)
++.++|+.+ .....++|++|+.+|++++++. |+++ .++.++|.++. ..+++++|++.++++
T Consensus 138 ~~~~~g~~~--------~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 138 LDCEEGWTR--------LKCGGNQNERAKVCFEKALEKK-----PKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHHHHHHH--------HHHCTTHHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred HHHHHHHHH--------HHHccccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 888888543 2234568999999999999862 2222 22333333322 223334455555544
Q ss_pred HHHHHH-------------hcC-----------------CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 159 IAIKEK-------------VLG-----------------KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 159 l~~~~~-------------~~~-----------------~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+++... ..+ ...|....++.++|.+|. ..|++++|+..+++++++.|+.
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCh
Confidence 433100 000 002344567889999997 9999999999999999988754
Q ss_pred hhhhhhhhhhhhhH--------------------------HHHh---hhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHY--------------------------RDLK---LFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 209 ~~~~~~~~~l~~~~--------------------------~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+. +++.++..+ +|+. .....+|....++..+|.++...|++++|++++
T Consensus 281 ~~---~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 281 AY---LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 32 222222211 2221 112224455556788999999999999999955
Q ss_pred HH
Q psy4339 260 NK 261 (303)
Q Consensus 260 ~~ 261 (303)
+.
T Consensus 358 ~k 359 (472)
T 4g1t_A 358 QK 359 (472)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-17 Score=120.22 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=137.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.++++++++.+.. .+....+.++.++| .++...|++++
T Consensus 4 d~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~----------~~~~~~g~~~~ 67 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTH----YLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLG----------NAYIFLGEFET 67 (164)
T ss_dssp CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH----------HHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHH----------HHHHHcCCHHH
Confidence 4566788999999877 58999999999999999998774 34455677888899 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.++++++++.+.. ++++....++.++|.++...|++++|+.++++++++.+.. .+++....++..+|.++. ..
T Consensus 68 A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~-~~ 142 (164)
T 3ro3_A 68 ASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYT-AL 142 (164)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHH-Hc
Confidence 999999999998765 4556678889999999999999999999999999998765 456777889999999997 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|+.++++++++.+
T Consensus 143 g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=133.31 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=146.4
Q ss_pred cHHH-HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 30 NLQV-AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 30 ~~~~-~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+|.. +.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++
T Consensus 32 ~~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la----------~~~~~~~~~~~ 89 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGY----LQRGNTEQAKVPLRKALEI--------DPSSADAHAALA----------VVFQTEMEPKL 89 (252)
T ss_dssp CHHHHHHHHHHHHHHH----HHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHH----HHcCChHHHHHHHHHHHhc--------CCChHHHHHHHH----------HHHHHcCCHHH
Confidence 4544 78888888766 5888999999999888876 344457777888 66688889999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.+++++++. .|....++..+|.++...|++++|+.++++++. .+..|....++..+|.++. ..
T Consensus 90 A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~-~~ 154 (252)
T 2ho1_A 90 ADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSL-QM 154 (252)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHH-Hc
Confidence 99999888875 233456778888899999999999999988876 1344666778888888886 88
Q ss_pred cCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhh---hccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKL---FSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
|++++|+.++++++...++++ .++..+...+...+|... .....|....++..++.++...|++++|..+++.
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999888777543 244444455555555422 2223455667789999999999999999996655
Q ss_pred H
Q psy4339 262 L 262 (303)
Q Consensus 262 ~ 262 (303)
+
T Consensus 235 ~ 235 (252)
T 2ho1_A 235 L 235 (252)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=137.64 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=159.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHR 84 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~ 84 (303)
..++.|+..|+++++. +|....++..+|.++ ...|++++|+.+++++++. +.++. ...++.
T Consensus 17 ~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~ 78 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCY----YELAKYDLAQKDIETYFSK------VNATKAKSADFE 78 (272)
T ss_dssp TCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHH----HHTTCHHHHHHHHHHHHTT------SCTTTCCHHHHH
T ss_pred cCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH----HHHhhHHHHHHHHHHHHhc------cCchhHHHHHHH
Confidence 4456677777777654 334456889999877 5999999999999999873 23333 577889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+| .++...|++++|+.+++++++. .|....++.++|.+|..+|++++|+.++++++++
T Consensus 79 ~lg----------~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 79 YYG----------KILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 999 7779999999999999999996 2334567899999999999999999999999865
Q ss_pred hcCCCchHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhh----------hhHHHHhhhc
Q psy4339 165 VLGKDDYEVGLSVGHLA-SLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLE----------YHYRDLKLFS 229 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la-~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~----------~~~~a~~~~~ 229 (303)
.|....++.++| .+| ..+++++|+.++++++++.|+++. .+.++..++ .+.++++...
T Consensus 138 -----~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 138 -----TTTDPKVFYELGQAYY--YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp -----SCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred -----CCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 255567889999 665 477999999999999999886542 333333333 3334444332
Q ss_pred cc----cccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 230 AS----YSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 230 ~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.. .+....++..+|.+|...|++++|.++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1225578999999999999999999966444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=135.38 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+
T Consensus 54 ~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 54 KEDAIPYINFANLL----SSVNELERALAFYDKALEL--------DSSAATAYYGAG----------NVYVVKEMYKEAK 111 (243)
T ss_dssp TTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHH----------HHHHHhccHHHHH
Confidence 44456777777666 4777777777777777765 233456666667 5557777777777
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.+++++++.. |....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|+
T Consensus 112 ~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~ 174 (243)
T 2q7f_A 112 DMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------ENDTEARFQFGMCLA-NEGM 174 (243)
T ss_dssp HHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHH-HcCC
Confidence 7777777752 1223456677777777777777777777777653 223446677777775 7777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++|+.++++++...+ ....++..+|.++...|++++|..+++.+
T Consensus 175 ~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP---------------------------GHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp CHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc---------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777776655 44567899999999999999999966544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=157.39 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=141.0
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
...+.++.|+.+|++|+++ +|+.+.++.+||.++ ..+|++++|+.+|++|+++ +|..+.+
T Consensus 20 ~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l----~~~g~~~eA~~~~~~Al~l--------~P~~~~a 79 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVL----QQQGKLQEALMHYKEAIRI--------SPTFADA 79 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 3556788999999999987 566778999999887 6999999999999999998 5677889
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.++| .++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.+|++|+++.
T Consensus 80 ~~nLg----------~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 80 YSNMG----------NTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999 7779999999999999999997 45667889999999999999999999999999874
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
|....++.++|.++. .+|++++|++.+++++++.++
T Consensus 142 --------P~~~~a~~~L~~~l~-~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 --------PDFPDAYCNLAHCLQ-IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --------SCCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHHH
T ss_pred --------CCChHHHhhhhhHHH-hcccHHHHHHHHHHHHHhChh
Confidence 555678999999998 999999999999999999884
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-18 Score=144.65 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=124.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+|++|+..+++++++.++.++++||..+.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~----------~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAM----------DACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHH----------HHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 389999999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
|.++..+++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+.. .++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~-e~~ 427 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA-NIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999999999999999999999999999999999886 543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=140.39 Aligned_cols=218 Identities=13% Similarity=0.008 Sum_probs=149.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh--hhHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL--LLTSA 82 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~ 82 (303)
...++.|+..|++++++ +|....++..+|.++ ...|++++|+.++++++++.......... .....
T Consensus 112 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 179 (365)
T 4eqf_A 112 NENEQAAIVALQRCLEL--------QPNNLKALMALAVSY----TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179 (365)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred CCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HccccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence 34567788888888776 355567899999877 69999999999999999874321000000 01233
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| .++...|++++|+.++++++... ++. ....++.++|.++..+|++++|+.++++++++.
T Consensus 180 ~~~l~----------~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 180 TRRMS----------KSPVDSSVLEGVKELYLEAAHQN-----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHS-----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHhhhhhHHHHHHHHHHHHHhC-----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34456 67789999999999999999862 221 135578899999999999999999999998863
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHH-------hhhccc
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDL-------KLFSAS 231 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~-------~~~~~~ 231 (303)
|....++.++|.++. ..|++++|+.++++++.+.|+++ .++.++..++.+.+|. +.....
T Consensus 244 --------p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 244 --------PEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp --------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred --------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444567899999997 99999999999999999887644 2445555555444443 222111
Q ss_pred ----c----ccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 232 ----Y----SGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 232 ----~----~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+ .....++..++.++...|+.+.|....
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 0 013567899999999999999888743
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=127.78 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+..+..+..+|.++ ...|++++|+.+|+++++.. ....++..+| .++...|++++|+
T Consensus 2 ~~~a~~~~~~g~~~----~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~----------~~~~~~~~~~~A~ 58 (258)
T 3uq3_A 2 GSMADKEKAEGNKF----YKARQFDEAIEHYNKAWELH---------KDITYLNNRA----------AAEYEKGEYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHH----------HHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHhh---------ccHHHHHHHH----------HHHHHcccHHHHH
Confidence 45778999999888 59999999999999999872 2246788888 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------------------HHhcCCCch
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-------------------EKVLGKDDY 171 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~ 171 (303)
.++++++++.... .++.+....++..+|.++...|++++|+.++++++.+. ++.. ...|
T Consensus 59 ~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~ 136 (258)
T 3uq3_A 59 STLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNP 136 (258)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCH
T ss_pred HHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCc
Confidence 9999999987653 23445557899999999999999999999999999842 1111 1347
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
....++..+|.++. ..|++++|+.++++++...+ ....++..+|.++...|+
T Consensus 137 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~---------------------------~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 137 EKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAP---------------------------EDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCc---------------------------ccHHHHHHHHHHHHHhCC
Confidence 77788899999997 99999999999999998777 345678999999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
+++|+.+++.+
T Consensus 189 ~~~A~~~~~~a 199 (258)
T 3uq3_A 189 FPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999955444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=139.89 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=147.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhH----
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLT---- 80 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---- 80 (303)
...++.|+..|++++++ .|....++..+|.++ ...|++++|+..+++++.... ..+...
T Consensus 111 ~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~ 173 (368)
T 1fch_A 111 NEQELLAISALRRCLEL--------KPDNQTALMALAVSF----TNESLQRQACEILRDWLRYTP-----AYAHLVTPAE 173 (368)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTST-----TTGGGCC---
T ss_pred CcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHH
Confidence 34567777778877766 345567899999877 599999999999999987632 222111
Q ss_pred ---------HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 81 ---------SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 81 ---------~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.....++ ..+ ..|++++|+.++++++... ++.+ ...++.++|.++...|++++|
T Consensus 174 ~~~~~~~~~~~~~~~~----------~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 174 EGAGGAGLGPSKRILG----------SLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp ------------CTTH----------HHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhcccHHHHHHH----------HHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 0111233 333 7888888888888888752 1111 456777888888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHH--
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDL-- 225 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~-- 225 (303)
+.++++++.+. |....++.++|.++. ..|++++|+.++++++.+.|+++ .++.++..++.+.+|.
T Consensus 237 ~~~~~~al~~~--------~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 237 VDCFTAALSVR--------PNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhC--------cCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888763 334567788888886 88888888888888888777543 2444444444444443
Q ss_pred -----hhhccc-------cccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 226 -----KLFSAS-------YSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 226 -----~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
...... ++....++..+|.++...|++++|.... +.+
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 221111 2233778999999999999999999944 444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-17 Score=127.04 Aligned_cols=197 Identities=15% Similarity=0.047 Sum_probs=147.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|..+.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++
T Consensus 3 ~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~ 60 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEY----MRGQDYRQATASIEDALKS--------DPKNELAWLVRA----------EIYQYLKVNDK 60 (225)
T ss_dssp -CCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCcccHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHh--------CccchHHHHHHH----------HHHHHcCChHH
Confidence 4577888999999777 5899999999999999886 344456778888 66689999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
|+.++++++.. .|....++..+|.++... |++++|+.+++++++ . +..|....++..+|.++. .
T Consensus 61 A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~-~ 125 (225)
T 2vq2_A 61 AQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-----PTYPTPYIANLNKGICSA-K 125 (225)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-----TTCSCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-----cCCcchHHHHHHHHHHHH-H
Confidence 99999999886 233456788999999999 999999999999886 1 345666778899999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccc-cHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYS-GLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.|++++|+.++++++...++++ .++.++...+...+|...+ ....| .....+..++.++...|+.++|..+.
T Consensus 126 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999998877543 2333444444444443221 11233 44445667777777888888777766
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 206 ~~~ 208 (225)
T 2vq2_A 206 AQL 208 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=145.91 Aligned_cols=133 Identities=13% Similarity=-0.001 Sum_probs=125.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+..+|+|++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++++.++.+|++||.++..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
++||.+|. .+|++++|+.++++|+++.. ..+|++||.+..++.+|+.+....+
T Consensus 375 ~nLa~~~~-~~g~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQL-HQGMFPQAMKNLRLAFDIMR-------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHH-------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999999999 9999999999999999998876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=130.10 Aligned_cols=213 Identities=13% Similarity=-0.038 Sum_probs=153.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+..|+++++. ...++|..+.++..+|.++ ...|++++|+.+|+++++. +|....++..
T Consensus 19 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~ 82 (275)
T 1xnf_A 19 LQQEVILARMEQILAS----RALTDDERAQLLYERGVLY----DSLGLRALARNDFSQALAI--------RPDMPEVFNY 82 (275)
T ss_dssp HHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCCCHHHHHH
T ss_pred chHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHH----HHcccHHHHHHHHHHHHHc--------CCCcHHHHHH
Confidence 3455566666655543 1134678899999999877 5999999999999999987 3445678888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+.++++++.. .|....++.++|.++...|++++|+.++++++++.
T Consensus 83 la----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 141 (275)
T 1xnf_A 83 LG----------IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--- 141 (275)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HH----------HHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---
Confidence 99 6779999999999999999996 23345678999999999999999999999999864
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh---hhhhhhhhhhhHHHH-------hhhccccccH
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL---FSASYSGLEYHYRDL-------KLFSASYSGL 235 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~l~~~~~a~-------~~~~~~~~~~ 235 (303)
++++ .....++. .. ..|++++|+..+++++...++.+. .+..+.......+|+ .......|..
T Consensus 142 --~~~~---~~~~~~~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 142 --PNDP---FRSLWLYL-AE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp --TTCH---HHHHHHHH-HH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --CCCh---HHHHHHHH-HH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 3333 22233333 34 689999999999999988774332 111111112222333 2111222334
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 236 EYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..++..+|.++...|++++|..+++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999966544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=137.15 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=145.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..+|+++++. +|....++..++.++ ...|++++|+.+++++++. +|....++.
T Consensus 35 ~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 94 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTL----VELNKANELFYLSHKLVDL--------YPSNPVSWF 94 (330)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTSTHHHH
T ss_pred cCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHH----HHhhhHHHHHHHHHHHHHh--------CcCCHHHHH
Confidence 35677888888888765 233345566666566 4788888888888888775 344456677
Q ss_pred HHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.+| .++...| ++++|+.++++++.. .|....++..+|.++...|++++|+.++++++++.
T Consensus 95 ~l~----------~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 95 AVG----------CYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHH----------HHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHH----------HHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 777 5557888 888888888888774 23344567788888888888888888888887764
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH-------hhhcc--
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL-------KLFSA-- 230 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~-------~~~~~-- 230 (303)
|....++..+|.++. ..|++++|+.++++++...|+++. ++..+...+.+.+|. .....
T Consensus 156 -------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 156 -------KGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp -------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred -------cccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 222345666888886 888888888888888887775542 333444444444443 21110
Q ss_pred ---ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 ---SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|....++..+|.++...|++++|+.+++.+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 01344567999999999999999999965444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=122.85 Aligned_cols=177 Identities=13% Similarity=0.165 Sum_probs=140.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|...++... .+.+..+.++..+| .++...|++++|+.++++++.+.++. .+.
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 62 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLG----------YVYAFMDRFDEARASFQALQQQAQKS--GDH 62 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHTT--CCH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHH----------HHHHHhCcHHHHHHHHHHHHHHHHHc--CCc
Confidence 36899999999554331 12335678889999 66799999999999999999998865 456
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+....++.++|.++..+|++++|+.++++++++.+.. +.+++....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-- 138 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQ-- 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH--
Confidence 7788999999999999999999999999999998753 3344477889999999997 99999999999999999877
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKIL 268 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~ 268 (303)
. .........++..+|.++...|++++|.. +.+++......
T Consensus 139 -----------------~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 139 -----------------Q--ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp -----------------H--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----------------h--ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 2 11222456678999999999999999999 55666555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-17 Score=144.38 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=162.2
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|...|++++++ .|. ..++..+|.++ ...|++++|+.+++++++. .|....++..+|
T Consensus 259 ~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~ 317 (537)
T 3fp2_A 259 LLDAQVLLQESINL--------HPT-PNSYIFLALTL----ADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHH--------CCC-HHHHHHHHHHT----CCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CCC-chHHHHHHHHH----HHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHH
Confidence 45566666666554 233 67889999776 6999999999999999987 344567788899
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++..
T Consensus 318 ----------~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 374 (537)
T 3fp2_A 318 ----------QMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----- 374 (537)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred ----------HHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 67799999999999999999962 3334678899999999999999999999999863
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----------hhhhhhh----------hhhHHHHhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----------SASYSGL----------EYHYRDLKL 227 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~l----------~~~~~a~~~ 227 (303)
|....++..+|.++. ..|++++|+.++++++...++.+.. +..+... +.+.+|+..
T Consensus 375 ---~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 375 ---PTLPEVPTFFAEILT-DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ---TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 334457889999997 9999999999999999998865421 2344444 666666532
Q ss_pred h---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 228 F---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 228 ~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+ ....|....++..+|.++...|++++|.++++.+
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 2335666788999999999999999999955443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=133.37 Aligned_cols=171 Identities=12% Similarity=-0.038 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhC--CCcHHH---HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 16 QLALKLKQVLFG--SENLQV---AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 16 ~~al~~~~~~~~--~~~~~~---~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
++|++.+++... +..|.. ...+..+|.++ ...|++++|+.++++++++... ..+....+.+++++|
T Consensus 92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg--- 162 (293)
T 3u3w_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV----LKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIA--- 162 (293)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH----TTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHH---
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH----HcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHH---
Confidence 344454444332 233432 44566788655 5889999999999999985322 122333567889999
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 170 (303)
.+|...|++++|+.+|+++++..++. +.+.+..+.++.++|.+|..+|++++|+.++++++++.... .+.
T Consensus 163 -------~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~ 232 (293)
T 3u3w_A 163 -------NIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSM 232 (293)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBC
T ss_pred -------HHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcH
Confidence 77799999999999999999988764 24667788899999999999999999999999999998775 455
Q ss_pred hHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~ 206 (303)
+..+.++.++|.+|. .+| .+++|+.++++|+.+..
T Consensus 233 ~~~~~~~~~lg~~~~-~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLR-KLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHH
Confidence 667899999999997 999 47999999999999988
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=125.81 Aligned_cols=175 Identities=7% Similarity=-0.134 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+..+|..+ ...|+|++|+..|+++++. .+.++....++..+| .+|...|++++|+..|
T Consensus 4 ~~~~~~~a~~~----~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg----------~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 4 PNEIYATAQQK----LQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLI----------YAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH----------HHHHhcCCHHHHHHHH
Confidence 45788899777 5999999999999999886 234455567889999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH------------------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQS------------------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
+++++.. |+++....++..+|.++.. +|++++|+..|+++++.. ++++....
T Consensus 65 ~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~ 134 (225)
T 2yhc_A 65 DRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTD 134 (225)
T ss_dssp HHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHH
T ss_pred HHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHH
Confidence 9999863 4556666788899998876 579999999999998764 34443322
Q ss_pred --------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 176 --------------SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 176 --------------~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
....+|.+|. ..|++++|+..|+++++..| +++....++..
T Consensus 135 a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p------------------------~~~~~~~a~~~ 189 (225)
T 2yhc_A 135 ATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYP------------------------DTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST------------------------TSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCc------------------------CCCccHHHHHH
Confidence 2257899996 99999999999999999888 33455678999
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++...|++++|+++++.+
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHH
Confidence 999999999999999977655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=123.96 Aligned_cols=161 Identities=12% Similarity=-0.080 Sum_probs=131.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..+++++++. .|....++..+|.++ ...|++++|+.+++++++. .|....++.
T Consensus 21 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~ 80 (225)
T 2vq2_A 21 GQDYRQATASIEDALKS--------DPKNELAWLVRAEIY----QYLKVNDKAQESFRQALSI--------KPDSAEINN 80 (225)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHH----HHcCChHHHHHHHHHHHHh--------CCCChHHHH
Confidence 34466777777777765 344467889999777 6999999999999999987 344456788
Q ss_pred HHHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.+| .++... |++++|+.++++++. .+..|....++.++|.++...|++++|+.+++++++..
T Consensus 81 ~l~----------~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 143 (225)
T 2vq2_A 81 NYG----------WFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ- 143 (225)
T ss_dssp HHH----------HHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHH----------HHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888 667999 999999999999988 13456667789999999999999999999999998763
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh-hhhh
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND-NLKL 210 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 210 (303)
|....++..+|.++. ..|++++|+.++++++...+ +++.
T Consensus 144 -------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 144 -------PQFPPAFKELARTKM-LAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp -------TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred -------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 334567899999997 99999999999999999887 5543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=127.02 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=107.5
Q ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q psy4339 39 ELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALV 118 (303)
Q Consensus 39 ~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 118 (303)
.||.++ ..+|++++|+..+++++.. +|.....+..+| .+|...|++++|+++|+++++
T Consensus 2 ~LG~~~----~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la----------~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 2 PLGSMR----RSKADVERYIASVQGSTPS--------PRQKSIKGFYFA----------KLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -----C----CCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHH----------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHH----HHcChHHHHHHHHHHhccc--------CcccHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHH
Confidence 477555 7899999999999988654 566667778899 777999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH-
Q psy4339 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL- 197 (303)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~- 197 (303)
+ +|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.+|. ..|++++|...
T Consensus 60 ~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~~~~~~aa~~~ 122 (150)
T 4ga2_A 60 V--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLC-KNDVTDGRAKYW 122 (150)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHCSSSSHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCChHHHHHHH
Confidence 7 45567789999999999999999999999999874 555678999999997 99999887765
Q ss_pred HHHHHHhhh
Q psy4339 198 YFRSIEIND 206 (303)
Q Consensus 198 ~~~al~~~~ 206 (303)
+++++++.|
T Consensus 123 ~~~al~l~P 131 (150)
T 4ga2_A 123 VERAAKLFP 131 (150)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCc
Confidence 599999888
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=132.25 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=145.5
Q ss_pred HHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q psy4339 41 AYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLS 120 (303)
Q Consensus 41 a~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 120 (303)
|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+..+++++..
T Consensus 127 a~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~- 183 (359)
T 3ieg_A 127 ALDA----FDGADYTAAITFLDKILEV--------CVWDAELRELRA----------ECFIKEGEPRKAISDLKAASKL- 183 (359)
T ss_dssp HHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHH----HHccCHHHHHHHHHHHHHh--------CCCchHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh-
Confidence 6666 6999999999999999887 344457788889 7779999999999999999885
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH---------HHHHHHHHHHhhcCH
Q psy4339 121 LKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS---------VGHLASLYNYHMLEY 191 (303)
Q Consensus 121 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~~g~~ 191 (303)
.|....++..+|.++...|++++|+..++++++.. ++++..... ...+|.++. ..|++
T Consensus 184 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~ 250 (359)
T 3ieg_A 184 -------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELI-RDGRY 250 (359)
T ss_dssp -------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHH-HTTCH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHH-HcCCH
Confidence 34445678999999999999999999999999764 444443322 335589997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhh--------hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKL--------FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~--------~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
++|+..+++++...++++. .+.++...+.+.+|+..+ ....|....++..+|.++...|++++|..+++
T Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999887553 344455555555665322 22356667789999999999999999999654
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 331 ~a 332 (359)
T 3ieg_A 331 AA 332 (359)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=135.63 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=157.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|..+|+++++. .|....++..+|.++ ...|++++|+.+++++++. .|....++..
T Consensus 35 ~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 94 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQA--------APEREEAWRSLGLTQ----AENEKDGLAIIALNHARML--------DPKDIAVHAA 94 (327)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CcCCHHHHHH
Confidence 4456667777776654 345667888999877 5999999999999999987 3445677888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH----------HHHHH-HH-HHHHhhcHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK----------HYGNI-GR-LYQSMQKFDEAER 153 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~l-a~-~~~~~~~~~~A~~ 153 (303)
+| .++...|++++|+..+++++.... ..+.... ....+ |. ++...|++++|+.
T Consensus 95 la----------~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 95 LA----------VSHTNEHNANAALASLRAWLLSQP-----QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHTST-----TTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HH----------HHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 88 777999999999999999998532 2211111 11122 55 6889999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh-
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF- 228 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~- 228 (303)
+++++++.. |....++..+|.++. ..|++++|+.++++++...++++ ..+..+...+.+.+|+..+
T Consensus 160 ~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 160 LLHAALEMN--------PNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhC--------CCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998763 344577899999997 99999999999999999888654 2455555556666665322
Q ss_pred --ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 --SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....|....++..+|.++...|++++|.++++.+
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2234566678999999999999999999965444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=134.39 Aligned_cols=187 Identities=13% Similarity=-0.033 Sum_probs=148.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+.+|+++++. .|..+.++..+|.++ ...|++++|+..++++++. .|....++.
T Consensus 16 ~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 75 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVF----LAMGKSKAALPDLTKVIAL--------KMDFTAARL 75 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCcchHHH
Confidence 34567777777777764 345567999999877 5999999999999999987 345557888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH------------HHHHHHHhhcHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGN------------IGRLYQSMQKFDEAE 152 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~~~~~~A~ 152 (303)
.+| .++...|++++|+..++++++.. +.......++.. +|.++...|++++|+
T Consensus 76 ~l~----------~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 76 QRG----------HLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHH----------HHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH----------HHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 899 77799999999999999998852 200033333333 489999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccc
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASY 232 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~ 232 (303)
.+++++++.. |....++..+|.++. ..|++++|+..+++++...|
T Consensus 141 ~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-------------------------- 185 (359)
T 3ieg_A 141 TFLDKILEVC--------VWDAELRELRAECFI-KEGEPRKAISDLKAASKLKS-------------------------- 185 (359)
T ss_dssp HHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCS--------------------------
T ss_pred HHHHHHHHhC--------CCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC--------------------------
Confidence 9999998763 344567899999997 99999999999999998766
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+|.++...|++++|..+++.+
T Consensus 186 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 186 -DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566889999999999999999855443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=126.81 Aligned_cols=157 Identities=8% Similarity=0.019 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+.++..+| ..+...|++++|+.++++++.. .|....++..+|.++...|++++|+.+++++
T Consensus 36 ~~~~~~~~a----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 36 ARDAYIQLG----------LGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHH----------HHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 477888888 6668899999999999998885 2334567888999999999999999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--hhhhhh----hhhhhhhhhhhhHHHHhhh---c
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE--INDNLK----LFSASYSGLEYHYRDLKLF---S 229 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~--~~~~~~----~~~~~~~~l~~~~~a~~~~---~ 229 (303)
++.. |....++..+|.++. ..|++++|+.++++++. ..+..+ .++..+...+.+.+|+..+ .
T Consensus 98 ~~~~--------~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 98 LASD--------SRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHC--------cCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8763 334567888999997 89999999999999988 333222 2333444444455554222 1
Q ss_pred cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 230 ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...|....++..+|.++...|++++|..+++.+
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 224455677889999999999999999855443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=143.78 Aligned_cols=189 Identities=10% Similarity=-0.021 Sum_probs=138.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|..+|++++++ .|....++..+|.++ ...|++++|+..|+++++. .|....++..+
T Consensus 388 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 447 (597)
T 2xpi_A 388 KISEARRYFSKSSTM--------DPQFGPAWIGFAHSF----AIEGEHDQAISAYTTAARL--------FQGTHLPYLFL 447 (597)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CccchHHHHHH
Confidence 344455555555443 233345666666555 4667777777777766654 22334556666
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .+|...|++++|+++|+++++. .|....++..+|.+|...|++++|+.+|++++++....
T Consensus 448 ~----------~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 508 (597)
T 2xpi_A 448 G----------MQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT- 508 (597)
T ss_dssp H----------HHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-
Confidence 6 6668888888888888888875 12234678899999999999999999999999886543
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+.++.....++..+|.++. ..|++++|+..++++++..| ....++..+|.+|
T Consensus 509 ~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p---------------------------~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLST---------------------------NDANVHTAIALVY 560 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS---------------------------CCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC---------------------------CChHHHHHHHHHH
Confidence 2232224788999999997 99999999999999998766 4456799999999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
...|++++|.++++.+
T Consensus 561 ~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 561 LHKKIPGLAITHLHES 576 (597)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999999999965544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=137.17 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHH-----HHHHhhhhHHHHhhhhHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALI-----LEEIALDSNELISVQFYK 107 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-----~~~~~~~~~~~~~~~~~~ 107 (303)
...++..+|.++ ...|++++|+.+|+++++. .++++....++..++.+ +...+ ..+...|+++
T Consensus 93 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~ 160 (450)
T 2y4t_A 93 FTAARLQRGHLL----LKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQA---LNAFGSGDYT 160 (450)
T ss_dssp CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCHH
T ss_pred cHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHH
Confidence 345566666555 4666666666666666543 22232111333333221 11111 5567788888
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+|+..+++++... |....++..+|.+|...|++++|+.+++++++.
T Consensus 161 ~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 161 AAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888877642 222334444555555555555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=134.35 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=49.7
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~ 225 (303)
|++++|+.+|+++++.. |....+++++|.++. .+|++++|+..+++++...|
T Consensus 180 ~~~~eA~~~~~~~l~~~--------p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p------------------- 231 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKC--------SPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDS------------------- 231 (291)
T ss_dssp THHHHHHHHHHHHHHHS--------CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------
T ss_pred hHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-------------------
Confidence 55555555555555431 222334555555554 55555555555555555444
Q ss_pred hhhccccccHHHHHHhHHHHHHhhhcHHHH-HHHHHHH
Q psy4339 226 KLFSASYSGLEYDYRGLIHVYECLENFEKM-TEFTNKL 262 (303)
Q Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~ 262 (303)
....++.++|.++...|+..++ .++++.+
T Consensus 232 --------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 232 --------GHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp --------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666799999999999999875 4576554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-17 Score=122.44 Aligned_cols=167 Identities=12% Similarity=0.062 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.+..+..+..+|.++ ...|++++|+..++++++. .|....++..+| .++...|++++|
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~~A 61 (186)
T 3as5_A 4 DDIRQVYYRDKGISH----AKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLG----------IAYVKTGAVDRG 61 (186)
T ss_dssp CCHHHHHHHHHHHHH----HHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CccChHHHHHHH----------HHHHHcCCHHHH
Confidence 345678889999777 5899999999999988654 344467788888 667999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
..+++++++. .|....++..+|.++...|++++|+.++++++... |....++..+|.++. ..|
T Consensus 62 ~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~-~~~ 124 (186)
T 3as5_A 62 TELLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALD-NLG 124 (186)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHH-HcC
Confidence 9999999986 23445678899999999999999999999998763 334567899999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++++|+.++++++...+ ....++..+|.++...|++++|..+++.+
T Consensus 125 ~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 125 RFDEAIDSFKIALGLRP---------------------------NEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998776 33567899999999999999999966544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-16 Score=115.88 Aligned_cols=152 Identities=19% Similarity=0.291 Sum_probs=129.2
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+.+..+.++..+| .++...|++++|+.++++++++.++. ++....+.++.++|.++..+|++++|+.+
T Consensus 4 d~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 71 (164)
T 3ro3_A 4 SRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEY 71 (164)
T ss_dssp CHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455778889999 66799999999999999999998764 45566778999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+++++++.+.. ++.+....++.++|.++. ..|++++|+.++++++.+.+ .. ...+.
T Consensus 72 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~-------------------~~--~~~~~ 127 (164)
T 3ro3_A 72 YKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQ-------------------EL--KDRIG 127 (164)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HT--TCHHH
T ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH-------------------Hc--cchHh
Confidence 99999998775 455667888999999997 99999999999999999887 21 23345
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
...++..+|.++...|++++|.+++ +.+
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6778999999999999999999955 444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=129.03 Aligned_cols=233 Identities=14% Similarity=0.012 Sum_probs=172.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..++.|...++++++.. +.++ ...+.++..+|.++ ...|++++|..++++++.+.... ++......++.
T Consensus 28 g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 97 (373)
T 1hz4_A 28 GNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVL----HCKGELTRSLALMQQTEQMARQH--DVWHYALWSLI 97 (373)
T ss_dssp TCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 44667777787777653 2233 34567889999776 58999999999999999998774 23334567788
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .++...|++++|+.++++++++..+..++.+|....++.++|.++...|++++|..++++++.+...
T Consensus 98 ~la----------~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 98 QQS----------EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHH----------HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 888 6669999999999999999999887654445777888999999999999999999999999988654
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh--h-h-hh-------hhhhhhhhhHHHHhhhc---c
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--K-L-FS-------ASYSGLEYHYRDLKLFS---A 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~--~-~-~~-------~~~~~l~~~~~a~~~~~---~ 230 (303)
. .++....++.++|.++. ..|++++|..++++++.+.+.. + . .. ..+...+...+|...+. .
T Consensus 168 ~---~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 168 Y---QPQQQLQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp S---CGGGGHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred c---CcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 2 22335578899999997 9999999999999999886532 1 1 11 11223344444432211 1
Q ss_pred cc----ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 SY----SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.. +.....+..+|.++...|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 122346789999999999999999955444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-17 Score=132.40 Aligned_cols=154 Identities=13% Similarity=-0.016 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
.....+..+|.++ ...|++++|+.+++++++..... .+....+.+++++| .+|...|++++|+.
T Consensus 113 ~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg----------~~y~~~~~~~~A~~ 176 (293)
T 2qfc_A 113 QFLQWQYYVAAYV----LKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIA----------NIYAENGYLKKGID 176 (293)
T ss_dssp HHHHHHHHHHHHH----HTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3456677788655 58899999999999999874432 22333577899999 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 112 LHQNALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+|++++++.+.. ++.+. ...++.++|.+|..+|++++|+.++++++++.... .+....+.++.++|.+|. .+|+
T Consensus 177 ~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~--~~~~~~~~~~~~lg~~y~-~~g~ 251 (293)
T 2qfc_A 177 LFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLR-KLEY 251 (293)
T ss_dssp HHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCSSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHH-HcCC
Confidence 999999987764 23333 33789999999999999999999999999997552 444567889999999997 9999
Q ss_pred HHHH-HHHHHHHHHhhh
Q psy4339 191 YHKA-EKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A-~~~~~~al~~~~ 206 (303)
+++| ..++++|+.+.+
T Consensus 252 ~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 252 EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 9999 888999999887
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=134.24 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=154.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH--
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH-- 83 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-- 83 (303)
..++.|...+++++++ .|....++..+|.++ ...|++++|+..++++++.. +..+......
T Consensus 69 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 131 (327)
T 3cv0_A 69 EKDGLAIIALNHARML--------DPKDIAVHAALAVSH----TNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQ 131 (327)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTS-----TTTTTC------
T ss_pred CCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhH
Confidence 4456777777777765 344567889999777 69999999999999998762 2222211110
Q ss_pred --------HHH-HHHHHHHhhhhH-HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 84 --------RVK-ALILEEIALDSN-ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 84 --------~~l-a~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
..+ + . ++...|++++|+.+++++++. .|....++..+|.++...|++++|+.
T Consensus 132 ~~~~~~~~~~~~~----------~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 132 ADVDIDDLNVQSE----------DFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----------hHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 011 2 3 468899999999999999885 23345678899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh-
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF- 228 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~- 228 (303)
+++++++.. |....++..+|.++. ..|++++|+.++++++...++++. ++.++...+.+.+|...+
T Consensus 194 ~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 194 NLRRAVELR--------PDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999998763 344567889999997 999999999999999998876442 444455555555554221
Q ss_pred --cccccc------------HHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 229 --SASYSG------------LEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 229 --~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
....|. ...++..+|.++...|++++|...+ +.+
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112233 6778999999999999999999954 444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=126.48 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=128.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|+..|++++++. + +....++.++|.++ ...|++++|+.+++++++. +|....++.
T Consensus 20 ~~~~~~A~~~~~~al~~~-----~--~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~ 80 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLT-----N--NQDSVTAYNCGVCA----DNIKKYKEAADYFDIAIKK--------NYNLANAYI 80 (228)
T ss_dssp TTCHHHHHHHHHHHHHHT-----T--TCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT--------TCSHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcc-----C--CCCcHHHHHHHHHH----HHhhcHHHHHHHHHHHHHh--------CcchHHHHH
Confidence 345677778888877761 1 12235777799877 5999999999999999976 455678889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV----QTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+| .+|...|++++|+..++++++.. ++++ ..+.++.++|.++..+|++++|+.+|+++++
T Consensus 81 ~l~----------~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 81 GKS----------AAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 999 77799999999999999999973 2333 2346799999999999999999999999987
Q ss_pred HHHHhcCCCchH--HHHHHHHHHHHHHHhhcCH---------------------------HHHHHHHHHHHHhhh
Q psy4339 161 IKEKVLGKDDYE--VGLSVGHLASLYNYHMLEY---------------------------HKAEKLYFRSIEIND 206 (303)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~~~la~~~~~~~g~~---------------------------~~A~~~~~~al~~~~ 206 (303)
+ .|. ...++.++|.+|. ..|+. ++|+.++++++++.|
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFY-NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHH-HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred c--------CCCcccHHHHHHHHHHHH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5 366 7789999999996 89888 788888888888777
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-16 Score=134.88 Aligned_cols=188 Identities=9% Similarity=-0.029 Sum_probs=146.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+.+|++++++ .|....++..+|.++ ...|++++|+.+|+++++. +|....++..+
T Consensus 158 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 217 (450)
T 2y4t_A 158 DYTAAIAFLDKILEV--------CVWDAELRELRAECF----IKEGEPRKAISDLKAASKL--------KNDNTEAFYKI 217 (450)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCGGGGHHHHHHHHHH--------HCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 445566666666554 345567899999877 5999999999999999887 34446788888
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH---------HHHHHHHHHhhcHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY---------GNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~~~~~~A~~~~~~ 157 (303)
| .++...|++++|+..+++++... ++++.....+ ..+|.++...|++++|+.+|++
T Consensus 218 ~----------~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 218 S----------TLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp H----------HHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9 77799999999999999999752 3333332222 4459999999999999999999
Q ss_pred HHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH
Q psy4339 158 AIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE 236 (303)
Q Consensus 158 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~ 236 (303)
++++. ++++. ....+..+|.++. ..|++++|+.++++++.+.| ...
T Consensus 283 ~l~~~-----p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p---------------------------~~~ 329 (450)
T 2y4t_A 283 VMKTE-----PSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEP---------------------------DNV 329 (450)
T ss_dssp HHHHC-----CSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCT---------------------------TCH
T ss_pred HHhcC-----CcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---------------------------ccH
Confidence 99853 33333 3568899999997 99999999999999998877 345
Q ss_pred HHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 237 YDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++..+|.++...|++++|..+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66888899999999999998854443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-15 Score=126.83 Aligned_cols=188 Identities=15% Similarity=-0.009 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.+...+|.++ ...|++++|..++++++.... ..+......++.++| .++...|++++|...
T Consensus 13 ~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~ 75 (373)
T 1hz4_A 13 HAEFNALRAQVA----INDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLG----------EVLHCKGELTRSLAL 75 (373)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHH----------HHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHH----------HHHHhcCcHHHHHHH
Confidence 456777888666 589999999999999988631 122233566788888 666999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++.+.... ++......++.++|.++..+|++++|+.++++++++.+...+..+|....++.++|.++. ..|+++
T Consensus 76 ~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~ 152 (373)
T 1hz4_A 76 MQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLD 152 (373)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHH
Confidence 99999998764 334455677899999999999999999999999999887655555778888999999997 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|..++++++.+.+ .. ..+....++..+|.++...|++++|..+++..
T Consensus 153 ~A~~~~~~al~~~~-------------------~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 153 EAEASARSGIEVLS-------------------SY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHTT-------------------TS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------------------cc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999887 21 22235577889999999999999999955443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=130.46 Aligned_cols=193 Identities=5% Similarity=-0.018 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
....++..||.+| ...|++++|.+++.+++.+.... .+......+..++| .++...|++++|+.
T Consensus 53 ~~~~al~~l~~~y----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~ 116 (434)
T 4b4t_Q 53 EQETSILELGQLY----VTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIE----------KFEQVPDSLDDQIF 116 (434)
T ss_dssp HHHHHHHHHHHHH----HHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHH----------HHCSCCSCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHH----------HHHhCCCCHHHHHH
Confidence 3456789999877 69999999999999999987764 23334556677777 66688999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
++++++.+..+. .+.+..+.++.++|.+|...|+|++|..++++++...... .+.+....++..+|.+|. .+|++
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 191 (434)
T 4b4t_Q 117 VCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYH-KLRNL 191 (434)
T ss_dssp HHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHH-HhCcH
Confidence 999999998765 4456678899999999999999999999999999877554 456788899999999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEW 265 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~ 265 (303)
++|..++++++.+.+ .. ...+......+..+|.++...|++++|.. +.+.+..+
T Consensus 192 ~~A~~~~~~al~~~~-------------------~~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 192 AKSKASLTAARTAAN-------------------SI-YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHH-------------------HS-CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-------------------cC-CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999887 22 22222356778889999999999999999 55665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=135.05 Aligned_cols=228 Identities=17% Similarity=0.105 Sum_probs=162.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHh--CCCc----HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 5 KILLKNLSLCSQLALKLKQVLF--GSEN----LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
...++.|+.+|+++++.++... .+++ |..+.++..+|.++ ...|++++|+.+++++++. .|.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~l~~--------~~~ 269 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK----FLKNDPLGAHEDIKKAIEL--------FPR 269 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH----HHSSCHHHHHHHHHHHHHH--------CCC
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhh--------Ccc
Confidence 4568889999999998776555 3333 77889999999877 5999999999999999876 122
Q ss_pred hHHHHHHHHHHHHHHhh------------------------hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 79 LTSAHRVKALILEEIAL------------------------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
..++..+|.++...+. ...++...|++++|+..+++++.. .|....+
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 340 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFP 340 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHH
Confidence 4445555533321100 005557777777777777777764 1223446
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh-----
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----- 209 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 209 (303)
+..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++...++++
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 7788888888888888888888887653 333457889999997 99999999999999999888654
Q ss_pred -----hhhhhhhh---hhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 210 -----LFSASYSG---LEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 210 -----~~~~~~~~---l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..+..+.. .+.+.+|+..+ ....|....++..+|.++...|++++|..+++.+
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 24455555 66666665322 2234566678899999999999999999955443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=137.57 Aligned_cols=212 Identities=11% Similarity=0.005 Sum_probs=130.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
..+.++.|..+|+++++. .|....++..++.++ ...|++++|+..+++++.. .|....++
T Consensus 317 ~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~ 376 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASL----HESGEKNKLYLISNDLVDR--------HPEKAVTW 376 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTSHHHH
T ss_pred HhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHH----HHhCCHHHHHHHHHHHHhh--------CcccHHHH
Confidence 345677888888888755 122334555666555 4677777777777766643 23334555
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
..+| ..|...|++++|..+|+++++. .|....++..+|.+|...|++++|+.+|+++++..
T Consensus 377 ~~l~----------~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 377 LAVG----------IYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHH----------HHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666 5556677777777777776664 22334456667777777777777777777666532
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhhc---------c
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLFS---------A 230 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~~---------~ 230 (303)
|....++..+|.+|. ..|++++|+.+|+++++..++++. ++..+...+.+.+|++.+. .
T Consensus 438 -------~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 438 -------QGTHLPYLFLGMQHM-QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp -------TTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred -------ccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 222345666777775 677777777777777666554432 2333333344444432111 1
Q ss_pred cccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 SYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|. ...++..+|.++...|++++|.++++.+
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2444 3778999999999999999999966544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=119.20 Aligned_cols=162 Identities=14% Similarity=0.015 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH----------------HHHHHHHHhhhh
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV----------------KALILEEIALDS 97 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~ 97 (303)
+..+...|..+ ...|++++|+.+|+++++. +|....++.. +|
T Consensus 4 ~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg---------- 61 (208)
T 3urz_A 4 VDEMLQKVSAA----IEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELA---------- 61 (208)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHH----------
Confidence 45667778767 5999999999999999987 4555566666 88
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.+|...|++++|+..|++++++ +|....++.++|.++..+|++++|+.+|++++++. |....++
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~ 125 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--------ADNLAAN 125 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHH
Confidence 7779999999999999999996 35556789999999999999999999999999874 5556789
Q ss_pred HHHHHHHHHhhcCH--HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHH
Q psy4339 178 GHLASLYNYHMLEY--HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255 (303)
Q Consensus 178 ~~la~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (303)
.++|.+|. ..|+. ..+...+++++...+ ...+++.+|.++...|++++|
T Consensus 126 ~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~a~~~~g~~~~~~~~~~~A 176 (208)
T 3urz_A 126 IFLGNYYY-LTAEQEKKKLETDYKKLSSPTK----------------------------MQYARYRDGLSKLFTTRYEKA 176 (208)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHC---CCCH----------------------------HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHhCCCc----------------------------hhHHHHHHHHHHHHccCHHHH
Confidence 99999995 77643 445555555442221 223577889999999999999
Q ss_pred HHHHHHH
Q psy4339 256 TEFTNKL 262 (303)
Q Consensus 256 ~~~~~~~ 262 (303)
+.+++.+
T Consensus 177 ~~~~~~a 183 (208)
T 3urz_A 177 RNSLQKV 183 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9966544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=134.87 Aligned_cols=188 Identities=14% Similarity=0.056 Sum_probs=153.1
Q ss_pred HhHHHHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFG--SENLQ----VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~--~~~~~----~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
+..+...+.+|++.+++.+. ++++. .+.++..+|.++ ...|++++|+.+++++++. +|. ..
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~~~~~--------~~~-~~ 277 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH----FLKNNLLDAQVLLQESINL--------HPT-PN 277 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCC-HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHhc--------CCC-ch
Confidence 44555677777777777654 33333 366888999766 5999999999999999987 333 57
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++..+| .++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++++
T Consensus 278 ~~~~l~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 278 SYIFLA----------LTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHH----------HHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 788888 7779999999999999999986 2344567899999999999999999999999986
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
. |....++..+|.++. ..|++++|+.++++++...| ....++..
T Consensus 340 ~--------~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~ 383 (537)
T 3fp2_A 340 N--------PENVYPYIQLACLLY-KQGKFTESEAFFNETKLKFP---------------------------TLPEVPTF 383 (537)
T ss_dssp C--------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---------------------------TCTHHHHH
T ss_pred C--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------CChHHHHH
Confidence 3 333467899999997 99999999999999998877 33456889
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++...|++++|+.+++.+
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999955444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=148.09 Aligned_cols=177 Identities=9% Similarity=-0.156 Sum_probs=139.0
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|++.++++++..-...+..+|..+.++..+|.++ ...|++++|+..|+++++. +|....+++++|
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg 474 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL----LDLGDVAKATRKLDDLAER--------VGWRWRLVWYRA 474 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH----HhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHH
Confidence 4556666666652111111234577778999999877 5999999999999999987 556678899999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..|++++++ .|....++.++|.++..+|++++ +.+|++++++.
T Consensus 475 ----------~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~----- 530 (681)
T 2pzi_A 475 ----------VAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN----- 530 (681)
T ss_dssp ----------HHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-----
T ss_pred ----------HHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-----
Confidence 6669999999999999999997 34456788999999999999999 99999999874
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
|....+++++|.++. .+|++++|+..|++++++.+ ....++.++|.++.
T Consensus 531 ---P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P---------------------------~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 531 ---DGVISAAFGLARARS-AEGDRVGAVRTLDEVPPTSR---------------------------HFTTARLTSAVTLL 579 (681)
T ss_dssp ---TTCHHHHHHHHHHHH-HTTCHHHHHHHHHTSCTTST---------------------------THHHHHHHHHHHTC
T ss_pred ---CchHHHHHHHHHHHH-HcCCHHHHHHHHHhhcccCc---------------------------ccHHHHHHHHHHHH
Confidence 555678999999997 99999999999999998877 55666777777775
Q ss_pred hhhc
Q psy4339 248 CLEN 251 (303)
Q Consensus 248 ~~g~ 251 (303)
..|+
T Consensus 580 ~~~~ 583 (681)
T 2pzi_A 580 SGRS 583 (681)
T ss_dssp ----
T ss_pred ccCC
Confidence 5443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=110.87 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|+.+..+.++|..+ +..|+|++|+.+|++++++ +|....++.++| .+|...|++++|
T Consensus 9 nP~~a~~~~~~G~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~----------~~~~~~~~~~~A 66 (126)
T 4gco_A 9 NPELAQEEKNKGNEY----FKKGDYPTAMRHYNEAVKR--------DPENAILYSNRA----------ACLTKLMEFQRA 66 (126)
T ss_dssp CHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHh----------hHHHhhccHHHH
Confidence 699999999999888 5999999999999999987 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+..+++++++ +|....++.++|.++..+|++++|+..|++++++. |....++.+++.++
T Consensus 67 ~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~l 125 (126)
T 4gco_A 67 LDDCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD--------PSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHC
T ss_pred HHHHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------cCCHHHHHHHHHhc
Confidence 9999999996 34556789999999999999999999999999874 44455667777653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=111.38 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=95.1
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
-+|..+..+.++| ..|...|+|++|+..|++++++ .|....++.++|.+|..+|++++|+..
T Consensus 8 inP~~a~~~~~~G----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 8 INPELAQEEKNKG----------NEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp CCHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHH
Confidence 4788899999999 7779999999999999999986 355567899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++++++. |....++.++|.++. .+|++++|+..|++++++.|
T Consensus 70 ~~~al~~~--------p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 70 CDTCIRLD--------SKFIKGYIRKAACLV-AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhh--------hhhhHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCc
Confidence 99999873 555678999999997 99999999999999999988
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=124.72 Aligned_cols=165 Identities=18% Similarity=0.085 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+.
T Consensus 21 ~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 21 MASMTGGQQMGRG----SEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFA----------NLLSSVNELERALA 78 (243)
T ss_dssp -------------------------CCTTHHHHHTT--------CTTCHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3567889999777 5999999999999999874 444567888888 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.++++++. .|....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|++
T Consensus 79 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~-~~~~~ 141 (243)
T 2q7f_A 79 FYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLV-KLEQP 141 (243)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHH-HTSCH
T ss_pred HHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HhccH
Confidence 99999986 23446778999999999999999999999999864 223457889999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++|+.++++++...+ ....++..+|.++...|++++|+.+++.+
T Consensus 142 ~~A~~~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 142 KLALPYLQRAVELNE---------------------------NDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999998877 34457889999999999999999965444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-15 Score=116.76 Aligned_cols=154 Identities=12% Similarity=-0.043 Sum_probs=122.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH----------------HHHHHHhhhhhcccHHHHHHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDE----------------LAYALYVNEYSSGRFTESRRHAEKAIQTF 68 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~y~~~~~~g~~~~A~~~~~~al~~~ 68 (303)
.+-++.|+..|++++++ +|+.+.++.. +|.++ ...|++++|+..|++++++
T Consensus 17 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAY----KKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp TTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHH-
Confidence 34567778888887776 5777778888 99877 5999999999999999998
Q ss_pred HhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 69 KNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 69 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
+|....++.++| .++...|++++|+..|++++++ +|....++.++|.+|..+|+.
T Consensus 84 -------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 84 -------APNNVDCLEACA----------EMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp -------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHH
Confidence 566678899999 7779999999999999999996 455567899999999887654
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 149 --DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 149 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+...+.+++. ++ | ...+++++|.++. ..|++++|+.+|++++++.|
T Consensus 139 ~~~~~~~~~~~~~~-------~~-~-~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 139 EKKKLETDYKKLSS-------PT-K-MQYARYRDGLSKL-FTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHC---C-------CC-H-HHHHHHHHHHHHH-HHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhC-------CC-c-hhHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC
Confidence 445555555431 22 2 2346788899997 89999999999999999888
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-15 Score=119.63 Aligned_cols=201 Identities=17% Similarity=0.090 Sum_probs=149.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYS----SGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
-++.|+.+|+++++ +++ +.++..+|.++ .. .+++++|+.+|+++++. + ...+
T Consensus 21 ~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~----~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a 76 (273)
T 1ouv_A 21 DFTQAKKYFEKACD-------LKE---NSGCFNLGVLY----YQGQGVEKNLKKAASFYAKACDL-------N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHH-------TTC---HHHHHHHHHHH----HHTSSSCCCHHHHHHHHHHHHHT-------T---CHHH
T ss_pred CHHHHHHHHHHHHH-------CCC---HHHHHHHHHHH----HcCCCcCCCHHHHHHHHHHHHHC-------C---CHHH
Confidence 45566666666655 233 35788999777 57 99999999999999875 1 3477
Q ss_pred HHHHHHHHHHHhhhhHHHHh----hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELIS----VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERM 154 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 154 (303)
+.++| .+|.. .+++++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+
T Consensus 77 ~~~lg----------~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 77 CHLLG----------NLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHH----------HHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHH----------HHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 88889 66678 99999999999999874 2 34678899999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHhhhhh--hhhhhhhhh----hhhhHHH
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEINDNL--KLFSASYSG----LEYHYRD 224 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~----l~~~~~a 224 (303)
++++++.. ...++.++|.+|. . .+++++|+.+++++++..... ..++..+.. .+...+|
T Consensus 137 ~~~a~~~~----------~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 137 FTKACDLN----------DGDGCTILGSLYD-AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHTT----------CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHhcC----------cHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 99998741 2356889999997 8 899999999999999874321 134445544 4555555
Q ss_pred Hhhhccc-cccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 225 LKLFSAS-YSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
+..+... ......++..+|.+|.. .+++++|+++++.+
T Consensus 206 ~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 206 LARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 5322211 00125678999999999 99999999955443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=128.69 Aligned_cols=224 Identities=14% Similarity=0.028 Sum_probs=159.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|+..|+++++.. | .+.++..+|.++ ...|++++|+..++++++. +|....++.
T Consensus 19 ~g~~~~A~~~~~~al~~~--------p-~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 77 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--------E-DPVFYSNLSACY----VSVGDLKKVVEMSTKALEL--------KPDYSKVLL 77 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CSCCHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--------c-cHHHHHhHHHHH----HHHhhHHHHHHHHHHHhcc--------ChHHHHHHH
Confidence 345677777788777761 3 267899999877 5999999999999999987 455668888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh-----------------------h-----------------
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKH-----------------------F----------------- 124 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------------~----------------- 124 (303)
.+| .++...|++++|+..|++++...... .
T Consensus 78 ~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 78 RRA----------SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred HHH----------HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 899 77799999999999999987643100 0
Q ss_pred -------CC------------------------CcHHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHHHHHhc--CC
Q psy4339 125 -------GE------------------------NNVQTAKHYGNIGRLYQS---MQKFDEAERMQLKAIAIKEKVL--GK 168 (303)
Q Consensus 125 -------~~------------------------~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~--~~ 168 (303)
.+ ..|.....+..+|.++.. .|++++|+.+++++++..+... .+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 00 002226667788888886 9999999999999998654433 22
Q ss_pred Cc----hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHh---hhccccccHHH
Q psy4339 169 DD----YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLK---LFSASYSGLEY 237 (303)
Q Consensus 169 ~~----~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~---~~~~~~~~~~~ 237 (303)
++ |....++..+|.++. ..|++++|+.++++++...++ +. .+.++...+.+.+|+. ......|....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKF-LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred cccccChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH
Confidence 22 677889999999997 999999999999999988775 21 2223333333333332 11122344455
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++..+|.++...|++++|+.+++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677778888888888888774433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=114.59 Aligned_cols=136 Identities=13% Similarity=-0.046 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|++.+++.. +.+|+....+..+|.+| ...|+|++|+.+|++++++ +|....++.++|
T Consensus 13 ~e~ai~~~~~a~-~~~p~~~~~~~~la~~y----~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg------- 72 (150)
T 4ga2_A 13 VERYIASVQGST-PSPRQKSIKGFYFAKLY----YEAKEYDLAKKYICTYINV--------QERDPKAHRFLG------- 72 (150)
T ss_dssp HHHHHHHHHHHS-CSHHHHHTTHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHhc-ccCcccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH-------
Confidence 444555555443 34688888999999877 5999999999999999998 566678999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHHHHHhcCCCchHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM-QLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~ 173 (303)
.+|...|++++|+..|++++++ .|....++.++|.+|..+|++++|... +++|+++. |..
T Consensus 73 ---~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--------P~~ 133 (150)
T 4ga2_A 73 ---LLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--------PGS 133 (150)
T ss_dssp ---HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--------TTC
T ss_pred ---HHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--------cCC
Confidence 7779999999999999999996 355567899999999999999887765 58999875 444
Q ss_pred HHHHHHHHHHHHHhhcC
Q psy4339 174 GLSVGHLASLYNYHMLE 190 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~ 190 (303)
..++...+.++. .+|+
T Consensus 134 ~~~~~l~~~ll~-~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLD-CEGE 149 (150)
T ss_dssp HHHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHHHH-HhCc
Confidence 456777888886 7775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=125.04 Aligned_cols=191 Identities=10% Similarity=-0.011 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|++++|+..|+++++. +|....++..+| .++...|++++|+..++
T Consensus 4 ~~~~~~a~~~----~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~----------~~~~~~~~~~~A~~~~~ 61 (272)
T 3u4t_A 4 DVEFRYADFL----FKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRA----------VCYYELAKYDLAQKDIE 61 (272)
T ss_dssp -CHHHHHHHH----HTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHHhhHHHHHHHHH
Confidence 4677888777 5999999999999999876 334445778888 67799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+++.. +++......++..+|.++...|++++|+.++++++++. |....++..+|.++. ..|++++|
T Consensus 62 ~a~~~-----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A 127 (272)
T 3u4t_A 62 TYFSK-----VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFY-NKGNFPLA 127 (272)
T ss_dssp HHHTT-----SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHhc-----cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHH-HccCHHHH
Confidence 99982 12333447789999999999999999999999999864 334567899999997 99999999
Q ss_pred HHHHHHHHHhhhhhhh----hh-hhhhhhhhhHHHHh---hhccccccHHHHHHhHHHHHHhhhc---HHHHHHHHHHH
Q psy4339 195 EKLYFRSIEINDNLKL----FS-ASYSGLEYHYRDLK---LFSASYSGLEYDYRGLIHVYECLEN---FEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~~~~~~~----~~-~~~~~l~~~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 262 (303)
+.++++++.+.++++. ++ ..+.. ..+.+|+. ......|....++..+|.++...|+ +++|..+++.+
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 9999999998765442 22 11111 23334442 2223345567788999999999999 88899954433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=104.29 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.++.+.++.+||+++| .+|+|++|+.+|++|+++ +|..+.++.++| .+|..+|++++|
T Consensus 4 ~~d~A~a~~~lG~~~~----~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg----------~~~~~~~~~~~A 61 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAY----KQKDFEKAHVHYDKAIEL--------DPSNITFYNNKA----------AVYFEEKKFAEC 61 (127)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHH----------HHHHHhhhHHHH
Confidence 3578889999999885 999999999999999988 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+..+++++++.... ....+..+.++.++|.++..+|++++|+++|++++..
T Consensus 62 ~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 62 VQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999987653 3445677889999999999999999999999999875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=113.35 Aligned_cols=176 Identities=11% Similarity=-0.041 Sum_probs=131.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+..|+++++. .+++|....++..+|.++ ...|++++|+..|+++++.. ++++....++..
T Consensus 18 g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~ 83 (225)
T 2yhc_A 18 GNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAY----YKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYM 83 (225)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHH
Confidence 4456666666666654 345666778999999888 49999999999999999872 445555678888
Q ss_pred HHHHHHHHhhh--------hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH--------------HHHHHHHHHHH
Q psy4339 86 KALILEEIALD--------SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA--------------KHYGNIGRLYQ 143 (303)
Q Consensus 86 la~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~la~~~~ 143 (303)
+|.++..++.. ...+...|++++|+..|+++++.. |+++... .....+|.+|.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88665332100 022345789999999999999864 2333221 22357899999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 144 SMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 144 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+|++++|+..|+++++.. ++++....++..+|.+|. .+|++++|+..++++....|
T Consensus 159 ~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCS
T ss_pred HcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCC
Confidence 9999999999999999875 566777789999999997 99999999999998877665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-15 Score=104.90 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=97.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.++.+.++.++| ..+...|+|++|+.+|++|+++ +|....++.++|.+|..+|++++|+..+
T Consensus 4 ~~d~A~a~~~lG----------~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLG----------NAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 345677888899 7779999999999999999996 3555778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++++.... ....+..+.++.++|.++. .+|++++|+.+|++++...+
T Consensus 66 ~~al~~~~~~-~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 66 EKAVEVGRET-RADYKLIAKAMSRAGNAFQ-KQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCccc-chhhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 9999987653 3445667889999999997 99999999999999998766
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=116.53 Aligned_cols=187 Identities=18% Similarity=0.151 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh----hhhH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS----VQFY 106 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~----~~~~ 106 (303)
|..+.++..+|.++ ...|++++|+.+|+++++. ....++.++| .+|.. .+++
T Consensus 3 ~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg----------~~~~~g~~~~~~~ 58 (273)
T 1ouv_A 3 EQDPKELVGLGAKS----YKEKDFTQAKKYFEKACDL----------KENSGCFNLG----------VLYYQGQGVEKNL 58 (273)
T ss_dssp --CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT----------TCHHHHHHHH----------HHHHHTSSSCCCH
T ss_pred CCChHHHHHHHHHH----HhCCCHHHHHHHHHHHHHC----------CCHHHHHHHH----------HHHHcCCCcCCCH
Confidence 44567889999777 5899999999999999871 2236788899 66688 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. + ...++.++|.
T Consensus 59 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~ 118 (273)
T 1ouv_A 59 KKAASFYAKACDL-------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGG 118 (273)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHH
Confidence 9999999999884 2 35678899999999 99999999999999874 1 2467899999
Q ss_pred HHHHh----hcCHHHHHHHHHHHHHhhhhhh--hhhhhhhh----hhhhHHHHhhhccc-cccHHHHHHhHHHHHHh---
Q psy4339 183 LYNYH----MLEYHKAEKLYFRSIEINDNLK--LFSASYSG----LEYHYRDLKLFSAS-YSGLEYDYRGLIHVYEC--- 248 (303)
Q Consensus 183 ~~~~~----~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~----l~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~--- 248 (303)
+|. . .|++++|+.+++++++..+... .++..+.. .+...+|+..+... ......++..+|.+|..
T Consensus 119 ~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 119 IYH-DGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHH-cCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 997 9 9999999999999998754211 24444443 44444554322211 01234678999999999
Q ss_pred -hhcHHHHHHHHHHH
Q psy4339 249 -LENFEKMTEFTNKL 262 (303)
Q Consensus 249 -~g~~~~A~~~~~~~ 262 (303)
.+++++|+++++.+
T Consensus 198 ~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 198 ATKNFKEALARYSKA 212 (273)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 99999999966444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=111.94 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|++.+++.+. ..|....++..+|.++ ...|++++|+.+++++++. .|....++..+|
T Consensus 24 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a------- 83 (186)
T 3as5_A 24 YSQAVMLLEQVYD-ADAFDVDVALHLGIAY----VKTGAVDRGTELLERSLAD--------APDNVKVATVLG------- 83 (186)
T ss_dssp HHHHHHHHTTTCC-TTSCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHHHH-hCccChHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH-------
Confidence 3455555555443 2344567899999877 5999999999999999887 344457788888
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.++...|++++|..++++++.. .|....++..+|.++...|++++|+.+++++++.. |...
T Consensus 84 ---~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~ 144 (186)
T 3as5_A 84 ---LTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEG 144 (186)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred ---HHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------ccch
Confidence 6669999999999999999986 23345678899999999999999999999998763 3345
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. ..|++++|..++++++.+.+
T Consensus 145 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 145 KVHRAIAFSYE-QMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 67899999997 99999999999999999888
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=114.00 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|..+ ...|++++|+..|+++++. +|....++..+| .++...|++++|+
T Consensus 3 ~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la----------~~~~~~g~~~~A~ 60 (176)
T 2r5s_A 3 ASPDEQLLKQVSEL----LQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKA----------DCLLETKQFELAQ 60 (176)
T ss_dssp ---CTTHHHHHHHH----HHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHHCCCHHHHH
Confidence 33445677888777 5999999999999999887 566778899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLY-QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
..+++++... + ++. ....++.+. ...+...+|+..+++++++. |....++.++|.++. ..|
T Consensus 61 ~~~~~a~~~~-----p-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~-~~g 122 (176)
T 2r5s_A 61 ELLATIPLEY-----Q-DNS---YKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYN-QVG 122 (176)
T ss_dssp HHHTTCCGGG-----C-CHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHhhhcc-----C-ChH---HHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-Hcc
Confidence 9999987641 2 332 233334332 23344556899999998764 555678899999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++++|+..+++++...| .+....++..+|.++...|+.++|.. |.+++
T Consensus 123 ~~~~A~~~~~~~l~~~p-------------------------~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 123 RDEEALELLWNILKVNL-------------------------GAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHTTCT-------------------------TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCc-------------------------ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999999999998877 11223468899999999999999999 55544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-14 Score=115.37 Aligned_cols=202 Identities=11% Similarity=-0.011 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLFGSENLQV-AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~-~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
|+.|++..++... .+|+. ......++.++ ...|++++|+..++. . +|....++..++
T Consensus 15 y~~ai~~~~~~~~-~~p~~~~e~~~~l~r~y----i~~g~~~~al~~~~~----------~-~~~~~~a~~~la------ 72 (291)
T 3mkr_A 15 YQQCINEAQRVKP-SSPERDVERDVFLYRAY----LAQRKYGVVLDEIKP----------S-SAPELQAVRMFA------ 72 (291)
T ss_dssp HHHHHHHHHHSCC-CSHHHHHHHHHHHHHHH----HHTTCHHHHHHHSCT----------T-SCHHHHHHHHHH------
T ss_pred HHHHHHHHHhccc-CCchhhHHHHHHHHHHH----HHCCCHHHHHHHhcc----------c-CChhHHHHHHHH------
Confidence 5667776665443 34554 56777778777 699999999976643 1 233456777777
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...|++++|++.+++.+.. ..+|....++..+|.++...|++++|+..+++ |..
T Consensus 73 ----~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~ 129 (291)
T 3mkr_A 73 ----EYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDS 129 (291)
T ss_dssp ----HHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCS
T ss_pred ----HHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCC
Confidence 6668899999999999988762 11355566788999999999999999999876 223
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh--hhhhhhhhh----hhhHHHHhh---hccccccHHHHHHhHHH
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK--LFSASYSGL----EYHYRDLKL---FSASYSGLEYDYRGLIH 244 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~l----~~~~~a~~~---~~~~~~~~~~~~~~la~ 244 (303)
..++..+|.++. .+|++++|+..+++++...|++. .++..+.++ +.+.+|+.. .....|....+++++|.
T Consensus 130 ~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 130 LECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 457889999997 99999999999999999887654 233333333 455555422 22336677788999999
Q ss_pred HHHhhhcHHHHHHHH-HHH
Q psy4339 245 VYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~-~~~ 262 (303)
++...|++++|...+ +++
T Consensus 209 ~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 999999999999954 444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=125.09 Aligned_cols=159 Identities=10% Similarity=0.019 Sum_probs=130.6
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC---
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE--- 126 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 126 (303)
..+++++|+..++++++. .|..+..+.++| .++...|++++|+..|++++.+.......
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 186 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERG----------TVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHhhccccCChH
Confidence 567788888888877665 566788899999 77799999999999999999975321000
Q ss_pred ----CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 127 ----NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 127 ----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
..+....++.++|.+|..+|++++|+.++++++++. |....+++++|.+|. .+|++++|+.+|++++
T Consensus 187 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHL-AVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 012346789999999999999999999999999874 555678999999997 9999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HH-HHH
Q psy4339 203 EINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FT-NKL 262 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~-~~~ 262 (303)
++.| ....++..++.++...|++++|.. .+ +.+
T Consensus 258 ~l~P---------------------------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 258 QLYP---------------------------NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCS---------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 445678999999999999999966 44 444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=119.13 Aligned_cols=214 Identities=12% Similarity=0.008 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh---hhhcccH-------HHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVN---EYSSGRF-------TESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~---~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
+.|...|++++.. +|..+.++..+|..+... ....|++ ++|...|++|++.. +|.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK 97 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence 4555666666655 456667888888655200 0025776 89999999998731 455
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...++..+| ..+...|++++|...|++++++ .++++. .++.++|.++...|++++|...|+++
T Consensus 98 ~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 98 NMLLYFAYA----------DYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp CHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567788888 6668999999999999999984 223332 27889999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhhhhhHHHHhhh----cc
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGLEYHYRDLKLF----SA 230 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~~~~a~~~~----~~ 230 (303)
++.. +. ...++...+.+.....|++++|..+|+++++..|+++.+ +..+..++...+|...+ ..
T Consensus 161 ~~~~-----p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 161 REDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HTST-----TC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HhcC-----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8742 22 234455555553203799999999999999998876542 33333334444443211 11
Q ss_pred --ccc-cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 --SYS-GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 --~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..| .....+..++......|+.++|...++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133 35678888999999999999999855443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=118.56 Aligned_cols=168 Identities=12% Similarity=0.015 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|..+ ...|++++|+..|+++++. +|....++.++| .++...|++++|+
T Consensus 114 p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la----------~~~~~~g~~~~A~ 171 (287)
T 3qou_A 114 PREEELXAQQAMQL----MQESNYTDALPLLXDAWQL--------SNQNGEIGLLLA----------ETLIALNRSEDAE 171 (287)
T ss_dssp CCHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCchhhHHHHHHHH----HhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHH----------HHHHHCCCHHHHH
Confidence 34556788899777 5999999999999999987 566668899999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++.. .|.........+..+...++.++|+..+++++... |....++.++|.++. ..|+
T Consensus 172 ~~l~~~~~~--------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~-~~g~ 234 (287)
T 3qou_A 172 AVLXTIPLQ--------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLH-QVGR 234 (287)
T ss_dssp HHHTTSCGG--------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTC
T ss_pred HHHHhCchh--------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHH-Hccc
Confidence 999998774 22334556677888889999999999999999864 556678999999998 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+++|+..|++++...| ......++..++.++...|+.++|.. +.+++
T Consensus 235 ~~~A~~~l~~~l~~~p-------------------------~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 235 NEEALELLFGHLRXDL-------------------------TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHHCT-------------------------TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-------------------------ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999887 11225668999999999999999999 55555
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-14 Score=113.03 Aligned_cols=184 Identities=11% Similarity=-0.066 Sum_probs=123.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|...|++++++ +|....++..+|.++ ...|++++|+.+|++++++ .|....++.
T Consensus 56 ~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 115 (275)
T 1xnf_A 56 LGLRALARNDFSQALAI--------RPDMPEVFNYLGIYL----TQAGNFDAAYEAFDSVLEL--------DPTYNYAHL 115 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCTHHHH
T ss_pred cccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH----HHccCHHHHHHHHHHHHhc--------CccccHHHH
Confidence 34566777777777766 344567899999877 5999999999999999987 344467888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH--
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-- 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 162 (303)
.+| .++...|++++|+.+++++++.. ++++ .....++ ++...|++++|+.++++++...
T Consensus 116 ~la----------~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 116 NRG----------IALYYGGRDKLAQDDLLAFYQDD-----PNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHH----------HHHHHhccHHHHHHHHHHHHHhC-----CCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCc
Confidence 899 77799999999999999999862 2333 2222223 3466799999999997776542
Q ss_pred ------------------------HHhcCCC---chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy4339 163 ------------------------EKVLGKD---DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY 215 (303)
Q Consensus 163 ------------------------~~~~~~~---~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (303)
++..... .|....++..+|.++. ..|++++|+.++++++.+.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--------- 246 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANNV--------- 246 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC---------
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCc---------
Confidence 1111110 0122455666666665 66666666666666665544
Q ss_pred hhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 216 SGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 216 ~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
.. +...+.++...|++++|++.
T Consensus 247 ------------------~~---~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 247 ------------------HN---FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp ------------------TT---CHHHHHHHHHHHHHHHC---
T ss_pred ------------------hh---HHHHHHHHHHHHHHHhhHHH
Confidence 21 22346778888999998883
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=110.78 Aligned_cols=159 Identities=18% Similarity=0.060 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh----hHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ----FYKEA 109 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~----~~~~A 109 (303)
+.++..||.++ ...+++++|+.+|+++.+. ..+.++.++| .+|.. + ++++|
T Consensus 18 ~~a~~~lg~~~----~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg----------~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 18 RRAQYYLADTW----VSSGDYQKAEYWAQKAAAQ----------GDGDALALLA----------QLKIR-NPQQADYPQA 72 (212)
T ss_dssp HHHHHHHHHHH----HHHTCHHHHHHHHHHHHHT----------TCHHHHHHHH----------HHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHH----hcCCCHHHHHHHHHHHHHc----------CCHHHHHHHH----------HHHHc-CCCCCCHHHH
Confidence 46899999777 5899999999999999764 2347788899 55566 6 89999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+.+|+++.+. . ...++.+||.+|.. .+++++|+.+|+++++.. +......++++||.+|.
T Consensus 73 ~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 73 RQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchHHHHHHHHHHHH
Confidence 9999999652 2 34578899999998 899999999999998641 11245778999999997
Q ss_pred Hh----hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh-h-----cHHHH
Q psy4339 186 YH----MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL-E-----NFEKM 255 (303)
Q Consensus 186 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A 255 (303)
. .+++++|+.+|+++.+. + ....++++||.+|... | ++++|
T Consensus 137 -~g~g~~~d~~~A~~~~~~A~~~-~---------------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 137 -SGVHGPEDDVKASEYFKGSSSL-S---------------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp -HTSSSSCCHHHHHHHHHHHHHT-S---------------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred -cCCCCCCCHHHHHHHHHHHHHc-C---------------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 8 78999999999999876 3 1223688999999864 3 89999
Q ss_pred HHHHHHH
Q psy4339 256 TEFTNKL 262 (303)
Q Consensus 256 ~~~~~~~ 262 (303)
+.+++..
T Consensus 188 ~~~~~~A 194 (212)
T 3rjv_A 188 LHWLNVS 194 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9966554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=129.73 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=112.3
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
.|++++|+..++++++. +|....++.++| .++...|++++|+..++++++. .|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~ 55 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLA----------DAELGMGDTTAGEMAVQRGLAL--------HPG 55 (568)
T ss_dssp ---------------------------CCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHTT--------STT
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 57899999999999876 455568889999 6779999999999999999985 345
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
...++.++|.+|..+|++++|+.++++++++. |....++.++|.++. ..|++++|+.++++++++.+
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p---- 122 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLP---- 122 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC----
Confidence 56789999999999999999999999999863 444678899999997 99999999999999998877
Q ss_pred hhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh---hcHHHHHHHHHH
Q psy4339 211 FSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL---ENFEKMTEFTNK 261 (303)
Q Consensus 211 ~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~ 261 (303)
....++.++|.++... |++++|.+.++.
T Consensus 123 -----------------------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 123 -----------------------EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3456788999999999 999999995433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=137.21 Aligned_cols=157 Identities=9% Similarity=-0.106 Sum_probs=130.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|++++|+..++++++..-......+|....++..+| .++...|++++|+..|+++++. +|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a----------~~~~~~g~~~~A~~~~~~al~~--------~p 464 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEV----------RALLDLGDVAKATRKLDDLAER--------VG 464 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHH--------HC
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHH----------HHHHhcCCHHHHHHHHHHHhcc--------Cc
Confidence 78999999999999982211111233567778889999 7779999999999999999996 34
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....++.++|.++..+|++++|+..|++++++. |....++.++|.++. .+|++++ +.+|++++++.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P--- 531 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTND--- 531 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCT---
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCC---
Confidence 456789999999999999999999999999874 445677899999997 9999999 999999999887
Q ss_pred hhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
....+++++|.++...|++++|++.++.
T Consensus 532 ------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 532 ------------------------GVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4556799999999999999999995543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=104.72 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=93.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|....+++.+| .++...|++++|+..|++++.+ +|....++.++|.++..+|++++|+.+|
T Consensus 32 ~p~~~~~~~~lg----------~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 32 PDDMMDDIYSYA----------YDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 677788999999 6679999999999999999996 4556678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++++. |....+++++|.+|. .+|++++|+.+|++++++.+
T Consensus 94 ~~al~l~--------P~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 94 AVAFALG--------KNDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHS--------SSCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 9999875 444567899999997 99999999999999999988
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-14 Score=115.58 Aligned_cols=151 Identities=8% Similarity=-0.069 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
+.|...|++|++ .-+|....++..+|..+ ...|++++|...|++++++ .+.++. .++.++|
T Consensus 81 ~~A~~~~~rAl~-------~~~p~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~- 141 (308)
T 2ond_A 81 DEAANIYERAIS-------TLLKKNMLLYFAYADYE----ESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYM- 141 (308)
T ss_dssp HHHHHHHHHHHT-------TTTTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHH-
T ss_pred HHHHHHHHHHHH-------HhCcccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHH-
Confidence 455555555554 12456667899999766 6899999999999999985 222222 2677788
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 89 ILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..+...|++++|...|+++++.. +. ....+...|.+... .|++++|..+|+++++..
T Consensus 142 ---------~~~~~~~~~~~A~~~~~~a~~~~-----p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~----- 199 (308)
T 2ond_A 142 ---------KFARRAEGIKSGRMIFKKAREDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----- 199 (308)
T ss_dssp ---------HHHHHHHCHHHHHHHHHHHHTST-----TC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----
T ss_pred ---------HHHHHhcCHHHHHHHHHHHHhcC-----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 66689999999999999999842 22 23445555555433 799999999999999875
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|....++.++|.++. ..|++++|..+|++++..
T Consensus 200 ---p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 200 ---GDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ---TTCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHS
T ss_pred ---CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence 444567899999997 999999999999999985
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=129.74 Aligned_cols=154 Identities=14% Similarity=-0.042 Sum_probs=119.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+..|+++++. +|..+.++..+|.++ ...|++++|+.+|+++++. +|....++.++
T Consensus 4 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 63 (568)
T 2vsy_A 4 DGPRELLQLRAAVRH--------RPQDFVAWLMLADAE----LGMGDTTAGEMAVQRGLAL--------HPGHPEAVARL 63 (568)
T ss_dssp -------------------------CCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHTT--------STTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 456677777777655 455668999999877 5899999999999999986 45557888999
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .++...|++++|+.+++++++. .|....++.++|.++..+|++++|+.++++++++.
T Consensus 64 g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 121 (568)
T 2vsy_A 64 G----------RVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---- 121 (568)
T ss_dssp H----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred H----------HHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 9 7779999999999999999996 34456788999999999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHM---LEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~---g~~~~A~~~~~~al~~~~~ 207 (303)
|....++.++|.++. .+ |++++|...++++++..++
T Consensus 122 ----p~~~~~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 122 ----PEEPYITAQLLNWRR-RLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp ----TTCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred ----CCCHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHhcCCc
Confidence 444567899999997 99 9999999999999998874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=103.15 Aligned_cols=105 Identities=13% Similarity=-0.014 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
.-+|+.+.++..+|.++ ...|++++|+.+|++++.+ +|....++.++| .++...|+++
T Consensus 30 ~l~p~~~~~~~~lg~~~----~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg----------~~~~~~g~~~ 87 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDF----YNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLA----------AIYQIKEQFQ 87 (151)
T ss_dssp CSCHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHHccHH
Confidence 35688999999999888 5999999999999999988 566678899999 7779999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+|+..|++++++ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 88 ~Ai~~~~~al~l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 88 QAADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHH--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999997 23445678999999999999999999999999874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=121.82 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-------chhhhHHHHHHHHHHHHHHhhhhHHHHh
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-------NHLLLTSAHRVKALILEEIALDSNELIS 102 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~~~~~ 102 (303)
.|..+.++..+|.++ ...|+|++|+.+|++++++....... ..+....++.++| .+|..
T Consensus 143 ~p~~a~~~~~~g~~~----~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~ 208 (336)
T 1p5q_A 143 KLEQSTIVKERGTVY----FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA----------MCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 577889999999888 59999999999999999984332100 1122367888889 77799
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.
T Consensus 209 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~ 272 (336)
T 1p5q_A 209 LQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAV 272 (336)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHH
Confidence 99999999999999997 34556789999999999999999999999999874 444568899999
Q ss_pred HHHHhhcCHHHH-HHHHHHHHHhhh
Q psy4339 183 LYNYHMLEYHKA-EKLYFRSIEIND 206 (303)
Q Consensus 183 ~~~~~~g~~~~A-~~~~~~al~~~~ 206 (303)
++. .+|++++| ...|++++....
T Consensus 273 ~~~-~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 273 CQQ-RIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 997 99999999 567888776555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=106.73 Aligned_cols=107 Identities=18% Similarity=0.069 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|.....+..+| ..+...|++++|+..|++++.. .|....++.++|.++..+|++++|+.+|
T Consensus 17 ~p~~~~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 17 SSDTLEQLYSLA----------FNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHhhHHHHHHHH----------HHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566778888999 6779999999999999999986 3455677899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++++.+. |....+++++|.++. .+|++++|+.+|++++++.+++|
T Consensus 79 ~~al~l~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 79 SYGAVMD--------IXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcC--------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 9999874 444567899999997 99999999999999999988333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=98.16 Aligned_cols=133 Identities=24% Similarity=0.263 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|..+++
T Consensus 2 ~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~~~~~ 59 (136)
T 2fo7_A 2 EAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLG----------NAYYKQGDYDEAIEYYQ 59 (136)
T ss_dssp HHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHH----HHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHH----------HHHHHhcCHHHHHHHHH
Confidence 4678889777 5899999999999999876 233456777788 66689999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+++... |....++..+|.++...|++++|+.++++++... |....++..+|.++. ..|++++|
T Consensus 60 ~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A 122 (136)
T 2fo7_A 60 KALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYY-KQGDYDEA 122 (136)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-TTTCHHHH
T ss_pred HHHHHC--------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HHccHHHH
Confidence 998852 3335578899999999999999999999998753 333467889999997 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
..++++++...|
T Consensus 123 ~~~~~~~~~~~~ 134 (136)
T 2fo7_A 123 IEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHccCC
Confidence 999999998766
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=101.50 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|....++..+|.++ ...|++++|+..|++++.. +|....++.++| .++...|++++|
T Consensus 17 ~p~~~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A 74 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQ----YQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLG----------ACRQAMGQYDLA 74 (148)
T ss_dssp CHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CHhhHHHHHHHHHHH----HHcCChHHHHHHHHHHHHc--------CcccHHHHHHHH----------HHHHHHhhHHHH
Confidence 688899999999887 5999999999999999987 455567888999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 75 ~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 75 IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999996 23445678999999999999999999999999886
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-13 Score=99.27 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
...+..+..+|.++ ...|++++|+.+|+++++. .|....++.++| .++...|++++|+
T Consensus 10 ~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~ 67 (166)
T 1a17_A 10 LKRAEELKTQANDY----FKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRS----------LAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCChHHHHHHH----------HHHHHcCCHHHHH
Confidence 35678899999877 5999999999999999987 344567888899 6679999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.++++++.. .|....++.++|.++..+|++++|+.++++++++. +.++. ......++..+. ..|+
T Consensus 68 ~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~-~~~~ 132 (166)
T 1a17_A 68 GDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIV-KQKA 132 (166)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHH-HHHH
Confidence 999999996 23445678999999999999999999999999874 33332 233455666686 8999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
+++|+.++.++..+.+
T Consensus 133 ~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 133 FERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHHhc
Confidence 9999999999888776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=98.25 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG----ENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
.+..+.+.| ..+...|+|++|+..|++|+++...... ...|....+|.++|.++..+|+|++|+.+
T Consensus 10 ~a~~~~~~G----------~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~ 79 (159)
T 2hr2_A 10 GAYLALSDA----------QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHS 79 (159)
T ss_dssp HHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456667777 6679999999999999999998654100 01133456999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSV----GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~----~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++|++++.+. +.-.|....+| +++|.++. .+|++++|+..|++++++.|
T Consensus 80 ~~kAL~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 80 ADKALHYFNRR-GELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHH-CCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc-ccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 99999986554 34457778888 99999997 99999999999999999998
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=95.82 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+..+| ..+...|++++|+..|+++++. .|....++.++|.++..+|++++|+..++++
T Consensus 3 ~a~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEG----------KEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456677788 7779999999999999999996 3445678999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++. |....++.++|.++. .+|++++|+..+++++.+.|
T Consensus 65 l~~~--------p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 65 IEKD--------PNFVRAYIRKATAQI-AVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHhC--------CCcHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhCc
Confidence 9874 445678999999997 99999999999999999996
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=107.16 Aligned_cols=141 Identities=14% Similarity=0.009 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|++++|+..|++++ .+ ...++.++| .++...|++++|+.
T Consensus 4 ~~~~~~~~~g~~~----~~~~~~~~A~~~~~~a~-------~~----~~~~~~~lg----------~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 4 VEAISLWNEGVLA----ADKKDWKGALDAFSAVQ-------DP----HSRICFNIG----------CMYTILKNMTEAEK 58 (213)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHTSS-------SC----CHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhCCHHHHHHHHHHHc-------CC----ChHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3455678899777 59999999999999873 11 246888899 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL--------GKDDYEVGLSVGHLASL 183 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~ 183 (303)
++++++.+ .|....++.++|.++..+|++++|+.++++++++..... ....|....++.++|.+
T Consensus 59 ~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 59 AFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHh--------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 99999996 244567899999999999999999999999998642210 00335567889999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 184 YNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 184 ~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+. .+|++++|+.++++++.+.+
T Consensus 131 ~~-~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YA-KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HH-HTTCHHHHHHHHHHHHTTCC
T ss_pred HH-HccCHHHHHHHHHHHHHcCc
Confidence 97 99999999999999999887
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-12 Score=110.28 Aligned_cols=181 Identities=13% Similarity=0.014 Sum_probs=148.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
..+.++.|.+++.+++++...+ .+......+...+|.++ ...|++++|+.++++++.+.... .+.+..+.++
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~ 138 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFE----QVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLS 138 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHC----SCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHH
Confidence 3455677888888888877653 23344556778888555 68999999999999999998875 3455578889
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.++| .+|...|+|++|..++++++...... .+.+....++..+|.+|..+|++++|..++++++.+..
T Consensus 139 ~~la----------~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 139 IKLA----------TLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHH----------HHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 9999 77799999999999999999887654 45678889999999999999999999999999999876
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. +..+...+..+..+|.++. ..|++++|..++.+++...+
T Consensus 207 ~~-~~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 207 SI-YCPTQTVAELDLMSGILHC-EDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HS-CCCHHHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHH
T ss_pred cC-CCchHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhh
Confidence 64 2233446778889999998 99999999999999998776
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-13 Score=94.50 Aligned_cols=123 Identities=9% Similarity=-0.023 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+..+..+|..+ ...|+|++|+.+|++++++ +|....++.++| .++...|++++|+
T Consensus 1 p~~a~~~~~~g~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a----------~~~~~~~~~~~A~ 58 (126)
T 3upv_A 1 SMKAEEARLEGKEY----FTKSDWPNAVKAYTEMIKR--------APEDARGYSNRA----------AALAKLMSFPEAI 58 (126)
T ss_dssp CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CchHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHH----------HHHHHhcCHHHHH
Confidence 35678899999877 5999999999999999987 455568899999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
..+++++++ .|....++.++|.++..+|++++|+..+++++++.... .+.|....+...++.+..
T Consensus 59 ~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 59 ADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence 999999996 34456789999999999999999999999999987443 223445556666666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=126.07 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=125.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC----
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG---- 125 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 125 (303)
..+++++|+..+..+++. .|..+..+.++| ..+...|+|++|+..|++|+++......
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKG----------TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHH----------HHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence 456777888888776655 566788899999 7779999999999999999998543100
Q ss_pred ---CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 126 ---ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 126 ---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
...+....++.++|.+|..+|++++|+.++++++++. |....+++++|.+|. .+|++++|+..|++++
T Consensus 308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQL-LMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 0022346889999999999999999999999999874 455678999999997 9999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 203 EINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++.| ....++..++.++...|++++|..
T Consensus 379 ~l~P---------------------------~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 379 EVNP---------------------------QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTC-------------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 344568899999999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=109.52 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=115.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+|++|.+.+...... .+..+..+..+| ..+...|++++|+..|.+++.+.... ++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~~~~~--~~~ 74 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEG----------NEFFKKNEINEAIVKYKEALDFFIHT--EEW 74 (198)
T ss_dssp -------CCCSGGGCCHHH--------HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHTTTTC--TTC
T ss_pred hhhhhccccCchhhCCHHH--------HHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHhcc--ccc
Confidence 4677888877777654332 445677788888 67799999999999999999864321 100
Q ss_pred ----------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 129 ----------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 129 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
.....++.++|.++..+|++++|+.++++++++. |....++.++|.++. .+|++++|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~~~~~~A~~~~ 145 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANM-YFGFLEEAKENL 145 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHH-HcccHHHHHHHH
Confidence 0124788999999999999999999999999873 445678999999997 999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 199 FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 199 ~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++++.+.| ....++..++.++...++..++..
T Consensus 146 ~~al~~~p---------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 146 YKAASLNP---------------------------NNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHHHHHST---------------------------TCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHCC---------------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877 445668889999999999988885
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=96.60 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
..+..+..+| ..+...|++++|+..+++++.. .|....++.++|.++...|++++|+.++++
T Consensus 11 ~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 11 KRAEELKTQA----------NDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567778888 7779999999999999999986 234467889999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHH
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEY 237 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~ 237 (303)
++.+. |....++.++|.++. ..|++++|+.++++++.+.+ .+ ....
T Consensus 73 a~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p------------------------~~-~~~~ 118 (166)
T 1a17_A 73 AIELD--------KKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKP------------------------HD-KDAK 118 (166)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST------------------------TC-HHHH
T ss_pred HHHhC--------cccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCC------------------------CC-HHHH
Confidence 99863 444568899999997 99999999999999998877 11 1223
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+...|++++|+++++..
T Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 119 MKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccch
Confidence 3456666688999999999966554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=93.72 Aligned_cols=121 Identities=22% Similarity=0.290 Sum_probs=101.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++... |....++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~ 72 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAW 72 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------CCchHHH
Confidence 6678999999999999999885 23345678899999999999999999999998753 3334578
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..+|.++. ..|++++|+.++++++...+ ....++..+|.++...|++++|..
T Consensus 73 ~~l~~~~~-~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 73 YNLGNAYY-KQGDYDEAIEYYQKALELDP---------------------------RSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCC---------------------------CChHHHHHHHHHHHHHccHHHHHH
Confidence 89999997 99999999999999998766 234568889999999999999999
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
+++.+
T Consensus 125 ~~~~~ 129 (136)
T 2fo7_A 125 YYQKA 129 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-13 Score=98.20 Aligned_cols=110 Identities=19% Similarity=0.099 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC---C-------cHHHHHHHHHHHHHHHHhhc
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE---N-------NVQTAKHYGNIGRLYQSMQK 147 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~~~ 147 (303)
..+..+...| ..+...|+|++|+..|.+++.+....... . .|....++.++|.+|..+|+
T Consensus 9 ~~a~~~~~~G----------~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 9 KSVEALRQKG----------NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3567788888 77799999999999999999986553211 1 45567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++|+.++++++.+. |....+++.+|.+|. .+|++++|+..|++++.+.|
T Consensus 79 ~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 79 LHEAEETSSEVLKRE--------ETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcC--------CcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCC
Confidence 999999999999873 556778999999997 99999999999999999988
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=95.66 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=91.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|.....+..+| ..+...|++++|+..|++++.. +|....++.++|.++..+|++++|+.+|
T Consensus 14 ~p~~~~~~~~~a----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 14 SEDTLEQLYALG----------FNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566677888899 6669999999999999999985 3455677899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |....++.++|.++. .+|++++|+.+|++++.+.|
T Consensus 76 ~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 76 SYGALMD--------INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHC--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 9999874 334457899999997 99999999999999999988
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-13 Score=97.47 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
-+|.....+..+|.++ ...|++++|+.+|++++.. +|.....+..+| .++...|++++
T Consensus 13 ~~p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~ 70 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQ----YQAGKWDDAQKIFQALCML--------DHYDARYFLGLG----------ACRQSLGLYEQ 70 (142)
T ss_dssp CCHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHH----HHHccHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHHhhHHH
Confidence 3688889999999877 5999999999999999987 455667888999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|+..|++++.+ .|....++.++|.++..+|++++|+.+|++++++.
T Consensus 71 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 71 ALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999996 23445578899999999999999999999999886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=102.93 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=101.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+..++++++. +|....++..+| .++...|++++|+.+|++++.+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~~~~~~A~~~~~~al~~~-------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--------NPQNSEQWALLG----------EYYLWQNDYSNSLLAYRQALQLR-------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHH--------CCSCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHcC--------
Confidence 4689999999999999887 345567888899 77799999999999999999973
Q ss_pred HHHHHHHHHHHHH-HHHhhcH--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 129 VQTAKHYGNIGRL-YQSMQKF--DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 129 ~~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|....++.++|.+ +...|++ ++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++.+.
T Consensus 75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAF-MQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhC
Confidence 2235678899999 8899999 99999999999863 444567899999997 9999999999999999988
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
|
T Consensus 146 p 146 (177)
T 2e2e_A 146 S 146 (177)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=92.63 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
..|.....+..+| ..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.+
T Consensus 7 ~~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 7 EDSAEAERLKTEG----------NEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp CHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhhHHHHHHH----------HHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHH
Confidence 4566778888888 6779999999999999999986 233456789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+++++... |....++..+|.++. ..|++++|+.++++++...+ .
T Consensus 69 ~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p---------------------------~ 112 (131)
T 2vyi_A 69 CERAICID--------PAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDP---------------------------D 112 (131)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST---------------------------T
T ss_pred HHHHHhcC--------ccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCc---------------------------c
Confidence 99999863 334567899999997 99999999999999998877 3
Q ss_pred HHHHHHhHHHHHHhhhcH
Q psy4339 235 LEYDYRGLIHVYECLENF 252 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~ 252 (303)
...++..+|.++...|++
T Consensus 113 ~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 113 NETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 345678899999888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=102.44 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...++++| ..+...|++++|+..|++++. + ...++.++|.+|...|++++|+.++++++
T Consensus 6 ~~~~~~~g----------~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 6 AISLWNEG----------VLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777 666899999999999998841 1 24588999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDY 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 239 (303)
.+. |....++.++|.++. ..|++++|+.++++++...+.++.+. +. .......|....++
T Consensus 65 ~~~--------~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~--~~---------~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 65 NRD--------KHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLID--YK---------ILGLQFKLFACEVL 124 (213)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEE--CG---------GGTBCCEEEHHHHH
T ss_pred HhC--------ccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHH--HH---------HhccccCccchHHH
Confidence 873 445678999999997 99999999999999999887222110 00 00012345677889
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++|.++...|++++|.++++.+
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999955443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=96.64 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=92.5
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+.+..+..+..+| ..+...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+
T Consensus 6 ~~~~~a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 6 APTPESDKLKSEG----------NAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp SCCHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455678888899 7779999999999999999996 344567899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++++++. |....++.++|.++. .+|++++|+.+|++++.+.+
T Consensus 68 ~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 68 AELATVVD--------PKYSKAWSRLGLARF-DMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC
Confidence 99999874 445678999999997 99999999999999999988
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-13 Score=94.79 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=103.4
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
...|.....+..+| ..+...|++++|+..++++++. .|....++.++|.++...|++++|+.
T Consensus 10 ~~~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 10 HMNPDLALMVKNKG----------NECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp CSSSCHHHHHHHHH----------HHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CcCcccHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 34455778889999 7779999999999999999985 33446788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYS 233 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~ 233 (303)
++++++++. |....++.++|.++. ..|++++|+.++++++...+
T Consensus 72 ~~~~a~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p--------------------------- 115 (133)
T 2lni_A 72 DCEECIQLE--------PTFIKGYTRKAAALE-AMKDYTKAMDVYQKALDLDS--------------------------- 115 (133)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCG---------------------------
T ss_pred HHHHHHHhC--------CCchHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCC---------------------------
Confidence 999999863 444567899999997 99999999999999998877
Q ss_pred cHHHHHHhHHHHHHhhhc
Q psy4339 234 GLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 234 ~~~~~~~~la~~~~~~g~ 251 (303)
....++..++.++..+|+
T Consensus 116 ~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 116 SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp GGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHhcC
Confidence 334567788888877764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-12 Score=93.81 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC----cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP----ENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
..+..+.++|+.+ +..|+|++|+..|++|+++...... ...|..+.++.++| .++..+|+|+
T Consensus 9 ~~a~~~~~~G~~l----~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g----------~al~~Lgr~~ 74 (159)
T 2hr2_A 9 VGAYLALSDAQRQ----LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA----------EALAGLRSFD 74 (159)
T ss_dssp HHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHH----------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHH----------HHHHHCCCHH
Confidence 3567889999888 5999999999999999999654111 11223455899999 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHY----GNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+|+..+.+|++++.+. ++-+|....+| ++.|.++..+|++++|+.+|++++++...
T Consensus 75 eAl~~~~kAL~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 75 EALHSADKALHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999986654 34456777788 99999999999999999999999999744
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=102.25 Aligned_cols=154 Identities=10% Similarity=-0.050 Sum_probs=112.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+-++.|+..|+++++. +|....++..+|.++ ...|++++|+..+++++.. .+ ++ .....
T Consensus 20 g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~----~~~g~~~~A~~~~~~a~~~-----~p-~~---~~~~~ 78 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDE--------LQSRGDVKLAKADCL----LETKQFELAQELLATIPLE-----YQ-DN---SYKSL 78 (176)
T ss_dssp TCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHH----HHTTCHHHHHHHHTTCCGG-----GC-CH---HHHHH
T ss_pred CCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHH----HHCCCHHHHHHHHHHhhhc-----cC-Ch---HHHHH
Confidence 3445566666665554 577788999999877 6999999999999998664 12 23 22222
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
++.+. +...+...+|+..++++++. +|....++.++|.++...|++++|+..|+++++..
T Consensus 79 ~~~~~---------~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 138 (176)
T 2r5s_A 79 IAKLE---------LHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--- 138 (176)
T ss_dssp HHHHH---------HHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHH---------HHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---
Confidence 33111 12223444688999999985 35556788999999999999999999999998753
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
++ +....++.++|.++. .+|+.++|+..|++++..
T Consensus 139 --p~-~~~~~a~~~l~~~~~-~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 --LG-AQDGEVKKTFMDILS-ALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TT-TTTTHHHHHHHHHHH-HHCSSCHHHHHHHHHHHH
T ss_pred --cc-cChHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHH
Confidence 11 112457889999998 999999999999999864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=108.72 Aligned_cols=155 Identities=12% Similarity=-0.027 Sum_probs=122.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+..|+++++. +|+...++..+|.++ ...|++++|+..+++++.. +|.......
T Consensus 130 ~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~----~~~g~~~~A~~~l~~~~~~--------~p~~~~~~~ 189 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETL----IALNRSEDAEAVLXTIPLQ--------DQDTRYQGL 189 (287)
T ss_dssp TTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHH----HHTTCHHHHHHHHTTSCGG--------GCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHH----HHCCCHHHHHHHHHhCchh--------hcchHHHHH
Confidence 34456677777777765 455668899999877 6999999999999988654 233333444
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+ ..+...++.++|+..+++++.. +|....++.++|.++...|++++|+..++++++..
T Consensus 190 ~~~----------~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-- 249 (287)
T 3qou_A 190 VAQ----------IELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-- 249 (287)
T ss_dssp HHH----------HHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHH----------HHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--
Confidence 444 4447788999999999999986 45666789999999999999999999999999864
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+++ ....++.++|.++. ..|+.++|...|++++..
T Consensus 250 ---p~~-~~~~a~~~l~~~~~-~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ---LTA-ADGQTRXTFQEILA-ALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---TTG-GGGHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred ---ccc-ccchHHHHHHHHHH-HcCCCCcHHHHHHHHHHH
Confidence 221 12567899999998 999999999999999864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=93.01 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...|.....+..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la----------~~~~~~~~~~ 67 (133)
T 2lni_A 10 HMNPDLALMVKNKGNEC----FQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRA----------ACYTKLLEFQ 67 (133)
T ss_dssp CSSSCHHHHHHHHHHHH----HHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHH----------HHHTTTTCHH
T ss_pred CcCcccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHH----------HHHHHhccHH
Confidence 45567889999999877 5999999999999999875 344467888899 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.+++++++. .|....++.++|.++...|++++|+.++++++++. |....++..++.++. .
T Consensus 68 ~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~ 130 (133)
T 2lni_A 68 LALKDCEECIQL--------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMM-A 130 (133)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHH-H
Confidence 999999999986 23445678999999999999999999999999863 445567889999986 7
Q ss_pred hcC
Q psy4339 188 MLE 190 (303)
Q Consensus 188 ~g~ 190 (303)
+|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=91.07 Aligned_cols=125 Identities=18% Similarity=0.093 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...|..+..+..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~ 63 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQ----MKVENFEAAVHFYGKAIEL--------NPANAVYFCNRA----------AAYSKLGNYA 63 (131)
T ss_dssp -CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHH
T ss_pred hcchhhhHHHHHHHHHH----HHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHH----------HHHHHhhchH
Confidence 35677889999999877 5999999999999999987 344467788888 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.++.+++.. .|....++..+|.++...|++++|+.++++++++. |....++..+|.++. .
T Consensus 64 ~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~ 126 (131)
T 2vyi_A 64 GAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD--------PDNETYKSNLKIAEL-K 126 (131)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhc--------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHH-H
Confidence 999999999986 23345678999999999999999999999999863 334567889999997 8
Q ss_pred hcCH
Q psy4339 188 MLEY 191 (303)
Q Consensus 188 ~g~~ 191 (303)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=95.25 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cc-------hhhhHHHHHHHHHHHHHHhhhhHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---EN-------HLLLTSAHRVKALILEEIALDSNEL 100 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~~~~~~~~ 100 (303)
...+..+..+|..+ +..|+|++|+..|.+++.+...... +. .|....++.++| .+|
T Consensus 8 ~~~a~~~~~~G~~~----~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~~ 73 (162)
T 3rkv_A 8 LKSVEALRQKGNEL----FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS----------QCY 73 (162)
T ss_dssp CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 45778999999888 5999999999999999998655311 11 455678889999 777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG-LSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~ 179 (303)
...|++++|+..+.+++.+ +|....++..+|.+|..+|++++|+..|++++.+. |... .+...
T Consensus 74 ~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~ 137 (162)
T 3rkv_A 74 LNIGDLHEAEETSSEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVARE 137 (162)
T ss_dssp HHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHH
Confidence 9999999999999999997 35567789999999999999999999999999874 3333 34555
Q ss_pred HHHHHHHhhcC
Q psy4339 180 LASLYNYHMLE 190 (303)
Q Consensus 180 la~~~~~~~g~ 190 (303)
++.+.. ..++
T Consensus 138 l~~~~~-~~~~ 147 (162)
T 3rkv_A 138 MKIVTE-RRAE 147 (162)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 666654 4443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=95.63 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=92.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+..+..+|.++ ...|+|++|+.+|++++++ +|....++.++| .+|...|++++
T Consensus 6 ~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~----------~~~~~~g~~~~ 63 (164)
T 3sz7_A 6 APTPESDKLKSEGNAA----MARKEYSKAIDLYTQALSI--------APANPIYLSNRA----------AAYSASGQHEK 63 (164)
T ss_dssp SCCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHH----------HHHHHccCHHH
Confidence 4567889999999888 5999999999999999988 455678899999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|+.++++++++ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 64 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 64 AAEDAELATVV--------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999997 34456789999999999999999999999999986
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-14 Score=123.63 Aligned_cols=131 Identities=13% Similarity=0.007 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+..+..+|.++ ...|++++|+.+|++++++ +|....++.++| .+|..+|++++|
T Consensus 2 ~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A 59 (477)
T 1wao_1 2 ALKRAEELKTQANDY----FKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRS----------LAYLRTECYGYA 59 (477)
T ss_dssp CHHHHTTSSSSSSST----TTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred hHhHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHhcCHHHH
Confidence 456667778888766 5999999999999999998 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--HHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL--YNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~ 187 (303)
+..+++++++ +|....++.++|.+|..+|++++|+.++++++++. |....++.+++.+ +. .
T Consensus 60 ~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~-~ 122 (477)
T 1wao_1 60 LGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIV-K 122 (477)
T ss_dssp HHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH-H
Confidence 9999999985 45567789999999999999999999999999874 3233456677777 86 8
Q ss_pred hcCHHHHHHHHH
Q psy4339 188 MLEYHKAEKLYF 199 (303)
Q Consensus 188 ~g~~~~A~~~~~ 199 (303)
+|++++|+..++
T Consensus 123 ~g~~~~A~~~~~ 134 (477)
T 1wao_1 123 QKAFERAIAGDE 134 (477)
T ss_dssp HHHHCCC-----
T ss_pred HHHHHHHhcccc
Confidence 999999999999
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=91.39 Aligned_cols=103 Identities=19% Similarity=0.092 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..+..+..+| ..+...|++++|+..|++++.. .|....++.++|.++..+|++++|+.+++
T Consensus 6 ~~~~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 6 SPSAQELKEQG----------NRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44567888889 7779999999999999999996 34446789999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++.+. |....++.++|.++. ..|++++|+.++++++.+.|
T Consensus 68 ~al~~~--------p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 68 RALELD--------GQSVKAHFFLGQCQL-EMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--------chhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHCh
Confidence 999864 445678999999997 99999999999999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=116.52 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-------chhhhHHHHHHHHHHHHHHhhhhHHHHh
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-------NHLLLTSAHRVKALILEEIALDSNELIS 102 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~~~~~ 102 (303)
.|..+..+.++|.++ +..|+|++|+..|++|+++....... ..+....++.++| .+|..
T Consensus 264 ~~~~a~~~~~~G~~~----~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~ 329 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVY----FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA----------MCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 567889999999888 59999999999999999985432100 1223467888888 77799
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.|++++|+..|.+++.+ .|....+++++|.+|..+|++++|+.+|++++++. |....++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~ 393 (457)
T 1kt0_A 330 LREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQISM 393 (457)
T ss_dssp TTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 99999999999999996 34457789999999999999999999999999763 556678999999
Q ss_pred HHHHhhcCHHHHHHH-HHHHH
Q psy4339 183 LYNYHMLEYHKAEKL-YFRSI 202 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~-~~~al 202 (303)
++. .+|++++|... +++++
T Consensus 394 ~~~-~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQK-KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHH-HHHHHHHHHHHHHHHC-
T ss_pred HHH-HHHHHHHHHHHHHHHHH
Confidence 998 99999888743 44433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=105.98 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+..+|..+ ...|+|++|+.+|++++.. +|....++.++| .+|...|++++|+..
T Consensus 3 ~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la----------~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRL----FVGRKYPEAAACYGRAITR--------NPLVAVYYTNRA----------LCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHhcCHHHHHHH
Confidence 356888999877 5999999999999999987 455568889999 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+++++++ +|....++.++|.++..+|++++|+..+++++++...
T Consensus 61 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 61 CRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999985 4555678999999999999999999999999998743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-12 Score=97.46 Aligned_cols=142 Identities=14% Similarity=0.044 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc--------hhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN--------HLLLTSAHRVKALILEEIALDSNELI 101 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~~~~ 101 (303)
.+..+..+..+|..+ ...|+|++|+.+|.+++++........ ......++.++| .++.
T Consensus 34 ~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----------~~~~ 99 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEF----FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA----------TCYN 99 (198)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH----------HHHH
Confidence 455788999999877 599999999999999998743210000 000136778888 7779
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|++++|+.++++++.+ .|....++.++|.+|..+|++++|+.+|++++++. |....++..++
T Consensus 100 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 163 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYE 163 (198)
T ss_dssp HTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHH
Confidence 999999999999999996 34456789999999999999999999999999874 44456788999
Q ss_pred HHHHHhhcCHHHHH-HHHHHHH
Q psy4339 182 SLYNYHMLEYHKAE-KLYFRSI 202 (303)
Q Consensus 182 ~~~~~~~g~~~~A~-~~~~~al 202 (303)
.++. .+++..++. ..+.+.+
T Consensus 164 ~~~~-~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 164 LCVN-KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHH-HHHHHHC----------
T ss_pred HHHH-HHHHHHHHHHHHHHHHh
Confidence 9997 888888877 4444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=107.42 Aligned_cols=133 Identities=15% Similarity=0.047 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHHHHhhcHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF--------GENNVQTAKHYGNIGRLYQSMQKFDE 150 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~ 150 (303)
.+..+..+| ..+...|++++|+..|++++++..... ....|....++.++|.+|..+|++++
T Consensus 222 ~a~~~~~~g----------~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 291 (370)
T 1ihg_A 222 ISEDLKNIG----------NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQG 291 (370)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 456677777 777999999999999999999765420 01356778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA 230 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~ 230 (303)
|+.++++++++. |....+++++|.+|. .+|++++|+..|++++++.|
T Consensus 292 A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P------------------------ 338 (370)
T 1ihg_A 292 AVDSCLEALEID--------PSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAP------------------------ 338 (370)
T ss_dssp HHHHHHHHHTTC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT------------------------
T ss_pred HHHHHHHHHHhC--------chhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC------------------------
Confidence 999999999753 556788999999997 99999999999999999887
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....++..++.++...++++++.+
T Consensus 339 ---~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 339 ---EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999999999988877
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-11 Score=104.56 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh----hhh
Q psy4339 34 AIAEDELAYALYVNEYS----SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS----VQF 105 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~----~~~ 105 (303)
+.++..||.+| .. .+++++|+.+|+++.+. . ...++.++| .+|.. .++
T Consensus 75 ~~a~~~Lg~~y----~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg----------~~y~~g~g~~~~ 130 (490)
T 2xm6_A 75 TPAEYVLGLRY----MNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLG----------VMYHEGNGVKVD 130 (490)
T ss_dssp HHHHHHHHHHH----HHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHH----------HHHHHTSSSCCC
T ss_pred HHHHHHHHHHH----HcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHH----------HHHHcCCCCCCC
Confidence 35788888665 45 78889999999888653 1 235667778 44455 678
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+++|+.+|+++.+. + ...++.++|.+|.. .+++++|+.+|+++++. . ...++.++|
T Consensus 131 ~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg 190 (490)
T 2xm6_A 131 KAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHH
Confidence 88888888887662 2 23567778888877 77888888888887652 1 134667777
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHh
Q psy4339 182 SLYNYH----MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 182 ~~~~~~----~g~~~~A~~~~~~al~~ 204 (303)
.+|. . .+++++|+.+|+++.+.
T Consensus 191 ~~y~-~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 191 YMYS-RGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHH-HTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHh-cCCCCCcCHHHHHHHHHHHHHC
Confidence 7775 6 67777777777777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-12 Score=88.74 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=86.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++.. ++++....++..+|.++...|++++|+.++++++... ++++....++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~ 79 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAGGL 79 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHHHH
Confidence 66689999999999999999862 4556666789999999999999999999999999864 4555567889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.++. .+|++++|+..+++++...|
T Consensus 80 ~~la~~~~-~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 80 LKLGLSQY-GEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCC
Confidence 99999997 99999999999999999888
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=87.06 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| .++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++
T Consensus 9 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLG----------NAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56778888 6679999999999999999986 23345678899999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
... |....++..+|.++. ..|++++|+.++++++.+.|
T Consensus 71 ~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 71 ELD--------PNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HhC--------CccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC
Confidence 763 333567889999997 99999999999999998877
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-11 Score=97.57 Aligned_cols=211 Identities=8% Similarity=-0.039 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
+.|..++.+++.+ +|+...+++..+.++ ...| ++++++.++.+++.. +|....+++..
T Consensus 50 ~~aL~~t~~~L~~--------nP~~~taWn~R~~~L----~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R 109 (306)
T 3dra_A 50 ERALHITELGINE--------LASHYTIWIYRFNIL----KNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH--------CcHHHHHHHHHHHHH----HHcccccHHHHHHHHHHHHHH--------CcccHHHHHHH
Confidence 3455555555555 577778999999888 5777 999999999999987 56666778888
Q ss_pred HHHHHHHhhhhHHHHhh---hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH--HHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISV---QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD--EAERMQLKAIAI 161 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~ 161 (303)
+.++..+. ... +++++++..+.++++. +|....++...+.+....|.++ ++++++.++++.
T Consensus 110 ~~iL~~~~------~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 110 QLIIGQIM------ELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHH------HHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 86652111 333 6899999999999985 5666788999999999999998 999999999975
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH-----h
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLE------YHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL-----K 226 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~------~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~-----~ 226 (303)
. |....++++.+.+.. ..|+ ++++++++++++.+.|++.. ....+..++....++ +
T Consensus 176 d--------~~N~sAW~~R~~ll~-~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 176 D--------LKNNSAWSHRFFLLF-SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp C--------TTCHHHHHHHHHHHH-SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred C--------CCCHHHHHHHHHHHH-hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3 556678999999997 8888 99999999999998885431 122222222211111 1
Q ss_pred h--hccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 227 L--FSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 227 ~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
. .+...+....++..+|.++.+.|+.++|+++++.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 11123566778999999999999999999977665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=108.69 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhh-------cccHH-------HHHHHHHHHHHHHHhhCCcch
Q psy4339 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYS-------SGRFT-------ESRRHAEKAIQTFKNLLPENH 76 (303)
Q Consensus 11 a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~ 76 (303)
+...|++|+.. .|....++..+|..+ .. .|+++ +|...|++|++. ..
T Consensus 257 a~~~y~~al~~--------~p~~~~~w~~~~~~~----~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~ 317 (530)
T 2ooe_A 257 VMFAYEQCLLV--------LGHHPDIWYEAAQYL----EQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LL 317 (530)
T ss_dssp HHHHHHHHHHH--------HTTCHHHHHHHHHHH----HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TC
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hC
Confidence 34455555544 345567888888655 33 79987 777777777651 13
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
|....++..+| ..+...|++++|...|++++++ .++++ ..++.++|.++...|++++|...|+
T Consensus 318 p~~~~l~~~~~----------~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 318 KKNMLLYFAYA----------DYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp SSCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45567777788 6668899999999999999984 22222 3478899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh----hhhhhhhHHH-------
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASL-YNYHMLEYHKAEKLYFRSIEINDNLKLFSAS----YSGLEYHYRD------- 224 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~l~~~~~a------- 224 (303)
+|++.. |.....+...+.+ +. ..|++++|..+|+++++..|+++.+-.. +..++...+|
T Consensus 381 ~Al~~~--------~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 381 KAREDA--------RTRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHTCT--------TCCTHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHhcc--------CCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 998642 2222334444544 43 6899999999999999999876643322 2233333333
Q ss_pred Hhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+.. .+.+|. ....+...+......|+.+.+..+.+.+
T Consensus 452 l~~-~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 452 LTS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHS-CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 122332 3456667777778889888888855443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-11 Score=85.03 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+..+| ..+...|++++|+.++++++.. .|....++.++|.++...|++++|+.+++++
T Consensus 3 ~~~~~~~l~----------~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELG----------NDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356677788 6779999999999999999986 2334567899999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+.... +.+.+....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 65 ~~~~~~~-~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 65 IEVGREN-REDYRQIAKAYARIGNSYF-KEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred Hhhcccc-chhHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Confidence 9987542 2334444788999999997 99999999999999998765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-10 Score=102.15 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=134.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-.+.|..+|+++.+. ++ +.++..+|.+++.-....+++++|+.+|+++++. . ...++.++
T Consensus 202 ~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~l 261 (490)
T 2xm6_A 202 NDAISAQWYRKSATS-------GD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-------G---NSIAQFRL 261 (490)
T ss_dssp CHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------T---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHH
Confidence 345566666666542 33 3578888866630000288999999999998753 1 23567778
Q ss_pred HHHHHHHhhhhHHHHh----hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELIS----VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFDEAERMQLK 157 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~ 157 (303)
| .+|.. .+++++|+.+|+++.+. ++ ..++.++|.+|... +++++|+.+|++
T Consensus 262 g----------~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 262 G----------YILEQGLAGAKEPLKALEWYRKSAEQ-------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp H----------HHHHHTTTSSCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred H----------HHHHCCCCCCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 8 44455 78899999999998752 22 34677889988887 889999999998
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHhhhhh--hhhhhhhhh----hhhhHHHHhhh
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHML---EYHKAEKLYFRSIEINDNL--KLFSASYSG----LEYHYRDLKLF 228 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g---~~~~A~~~~~~al~~~~~~--~~~~~~~~~----l~~~~~a~~~~ 228 (303)
+++. .+ ..++.++|.+|. ..| ++++|+.+|+++++..... -.++..+.. .....+|+..+
T Consensus 322 a~~~-------~~---~~a~~~lg~~y~-~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 322 SAEQ-------GD---ATAQANLGAIYF-RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHT-------TC---HHHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHhc-------CC---HHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8763 12 246788898886 655 7889999999988763211 123333333 23333444222
Q ss_pred ccc-cccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 229 SAS-YSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~-~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
... ......++.+||.+|.. .+++++|..+++.+
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 110 01235678999999998 89999999955444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=88.99 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+..+..+|.++ ...|+|++|+.+|++++.. +|....++.++| .++...|++++|+
T Consensus 6 ~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~----------~~~~~~~~~~~A~ 63 (137)
T 3q49_B 6 SPSAQELKEQGNRL----FVGRKYPEAAACYGRAITR--------NPLVAVYYTNRA----------LCYLKMQQPEQAL 63 (137)
T ss_dssp CCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHH----HHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHH----------HHHHHhcCHHHHH
Confidence 44578899999877 5999999999999999987 455567889999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+++++.+ .|....++.++|.++..+|++++|+.++++++++...
T Consensus 64 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 64 ADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999996 3445668999999999999999999999999998754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=102.64 Aligned_cols=193 Identities=9% Similarity=-0.114 Sum_probs=144.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH-------HHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDEL-------AYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL- 77 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 77 (303)
.....|.+.|.+++++ +|..++++..+ +.++ ...+++.+++..+++++.+....++....
T Consensus 20 ~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L----~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 20 MSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTL----FRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHH----HHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred CCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHH----HHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 4466777888888777 67888899988 7777 58888899999999988764333221111
Q ss_pred ----------h--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh
Q psy4339 78 ----------L--LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM 145 (303)
Q Consensus 78 ----------~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 145 (303)
. ...+...++ ..+...|+|++|.+.|...+.. .|... ..+.+|.++...
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA----------~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFA----------ACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHH----------HHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHT
T ss_pred CCcccccccccCCHhHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHc
Confidence 0 123333445 6668999999999999876652 34444 788999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
++|++|+.+++++... + +|. ...+++++|.++. .+|++++|+.+|++++...
T Consensus 149 ~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~------------------- 201 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSP------------------- 201 (282)
T ss_dssp TCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTST-------------------
T ss_pred CCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCC-------------------
Confidence 9999999999866432 1 233 3458999999998 9999999999999987321
Q ss_pred Hhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|. ...+.+.+|.++..+|+.++|...++.+
T Consensus 202 ------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 202 ------AGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp ------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1133 6678999999999999999999966554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-12 Score=89.23 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++. |....++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~ 88 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVH 88 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 6668999999999999999996 45567789999999999999999999999999874 4455688
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|.++. ..|++++|+..+++++++.|
T Consensus 89 ~~la~~~~-~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 89 AALAVSHT-NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 99999997 99999999999999998877
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-11 Score=85.20 Aligned_cols=118 Identities=24% Similarity=0.190 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 8 SAEAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLG----------NAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHH----------HHHHHhCCHHHHHHH
Confidence 467889999877 5899999999999999886 234456778888 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+++++.. .|....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|
T Consensus 66 ~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~g 125 (125)
T 1na0_A 66 YQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQ-KQG 125 (125)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHC
T ss_pred HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-hcc
Confidence 9999985 23335678899999999999999999999998763 344456788888885 554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-13 Score=116.72 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=98.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..|++++++ +|....++.++|.+|..+|++++|+.++++++++. |....++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~ 77 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGY 77 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 6778999999999999999996 35557889999999999999999999999999863 5566789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHH--HHhhhcHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHV--YECLENFEKM 255 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A 255 (303)
.++|.+|. .+|++++|+.++++++++.+ ....++..++.+ +..+|++++|
T Consensus 78 ~~lg~~~~-~~g~~~eA~~~~~~al~~~p---------------------------~~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 78 YRRAASNM-ALGKFRAALRDYETVVKVKP---------------------------HDKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHST---------------------------TCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 99999999999999999877 222345667766 8889999999
Q ss_pred HHHHH
Q psy4339 256 TEFTN 260 (303)
Q Consensus 256 ~~~~~ 260 (303)
++.++
T Consensus 130 ~~~~~ 134 (477)
T 1wao_1 130 IAGDE 134 (477)
T ss_dssp -----
T ss_pred hcccc
Confidence 99654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=96.18 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=96.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
+...|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++.+. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35789999999999999985 23445688999999999999999999999999875 333567889
Q ss_pred HHHH-HHHhhcCH--HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 180 LASL-YNYHMLEY--HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 180 la~~-~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+|.+ +. ..|++ ++|+.++++++...| ....++..+|.++...|++++|.
T Consensus 84 la~~l~~-~~~~~~~~~A~~~~~~al~~~p---------------------------~~~~~~~~la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 84 LATVLYY-QASQHMTAQTRAMIDKALALDS---------------------------NEITALMLLASDAFMQANYAQAI 135 (177)
T ss_dssp HHHHHHH-HTTTCCCHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH-hcCCcchHHHHHHHHHHHHhCC---------------------------CcHHHHHHHHHHHHHcccHHHHH
Confidence 9999 86 89999 999999999998877 34567899999999999999999
Q ss_pred HHHHHH
Q psy4339 257 EFTNKL 262 (303)
Q Consensus 257 ~~~~~~ 262 (303)
.+++.+
T Consensus 136 ~~~~~a 141 (177)
T 2e2e_A 136 ELWQKV 141 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 965444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-11 Score=84.96 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+.++..+|.++ ...|++++|+.++++++.. .|....++.++| .++...|++++|+.
T Consensus 2 ~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 2 KQALKEKELGNDA----YKKKDFDTALKHYDKAKEL--------DPTNMTYITNQA----------AVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHH----------HHHHHhccHHHHHH
Confidence 4677899999877 5999999999999999987 344457788889 67799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
++++++...... +.+.+....++.++|.++...|++++|+.++++++++. + ++ .....++.+..
T Consensus 60 ~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~~---~~~~~l~~~~~ 123 (131)
T 1elr_A 60 LCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-----R-TP---DVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-CH---HHHHHHHHHHH
T ss_pred HHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C-CH---HHHHHHHHHHH
Confidence 999999986542 23344447889999999999999999999999999852 2 23 34555666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-11 Score=102.68 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC--------CcchhhhHHHHHHHHHHHHHHhhhhHHHHhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL--------PENHLLLTSAHRVKALILEEIALDSNELISV 103 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~ 103 (303)
..+..+..+|..+ ...|+|++|+..|++++++..... ...+|....++.++| .+|...
T Consensus 221 ~~a~~~~~~g~~~----~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~~ 286 (370)
T 1ihg_A 221 LISEDLKNIGNTF----FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG----------ACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH----------HHHHHT
T ss_pred HHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH----------HHHHhc
Confidence 4567889999877 599999999999999999765420 013566778899999 777999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
|++++|+.++++++++ .|....++.++|.+|..+|++++|+..|++++++. |....++..++.+
T Consensus 287 g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKV 350 (370)
T ss_dssp TCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 9999999999999985 35567789999999999999999999999999874 3445677889999
Q ss_pred HHHhhcCHHHHHHH
Q psy4339 184 YNYHMLEYHKAEKL 197 (303)
Q Consensus 184 ~~~~~g~~~~A~~~ 197 (303)
+. .+++++++...
T Consensus 351 ~~-~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQ-KIKAQKDKEKA 363 (370)
T ss_dssp HH-HHHHHHHHHHC
T ss_pred HH-HHHHHHHHHHH
Confidence 97 88888877643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=95.62 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+|+.+|+++.+. ..+.++.++| .+|...+++++|+.+|+++.+. + ...+
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg----------~~~~~~~~~~~A~~~~~~a~~~-------g---~~~a 52 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLA----------DTWVSSGDYQKAEYWAQKAAAQ-------G---DGDA 52 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHT-------T---CHHH
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHH----------HHHhcCCCHHHHHHHHHHHHHc-------C---CHHH
Confidence 3577788887653 2347788899 6668899999999999999873 2 2467
Q ss_pred HHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQ----KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~~~ 206 (303)
+.+||.+|.. + ++++|+.+|+++.+ +....+++++|.+|. . .+++++|+.+|+++.+..+
T Consensus 53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----------~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 53 LALLAQLKIR-NPQQADYPQARQLAEKAVE----------AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHTTS-STTSCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCC
Confidence 8899999998 7 89999999999965 223467899999996 7 8899999999999986544
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 207 NLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 207 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
....+.++++||.+|.. .+++++|+.+++..
T Consensus 121 -------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 121 -------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred -------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 11346789999999999 88999999966544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.32 E-value=8e-11 Score=83.85 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|++++|+..|+++++. .++++....++..+| .++...|++++|+.+++
T Consensus 3 ~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg----------~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 3 RTAYNVAFDA----LKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLG----------ESYYATRNFQLAEAQFR 63 (129)
T ss_dssp CCHHHHHHHH----HHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHH----------HHHHHhccHHHHHHHHH
Confidence 3567788777 5999999999999999886 244555567888899 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+++... ++++....++..+|.++..+|++++|+.++++++... ++++....+...+.
T Consensus 64 ~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 64 DLVSRY-----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred HHHHHC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 999863 4455557789999999999999999999999999864 44555444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-11 Score=83.05 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| ..+...|++++|+..+++++.. .|....++.++|.++...|++++|+.++++++
T Consensus 4 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKG----------NKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35666777 6678999999999999999986 23345678999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.. |....++.++|.++. ..|++++|..++++++...|
T Consensus 66 ~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 66 DLK--------PDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HhC--------cccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCC
Confidence 863 344567899999997 99999999999999998877
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=105.71 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--------------hHHHHHHHHHHHHHHhhh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--------------LTSAHRVKALILEEIALD 96 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~ 96 (303)
+..+..+..+|..+ ...|+|++|+.+|++++.+... ++. ...++.++|
T Consensus 176 ~~~a~~~~~~g~~~----~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~l~~~~~~nla--------- 237 (338)
T 2if4_A 176 IGAADRRKMDGNSL----FKEEKLEEAMQQYEMAIAYMGD-----DFMFQLYGKYQDMALAVKNPCHLNIA--------- 237 (338)
T ss_dssp HHHHHHHHHHHHHT----CSSSCCHHHHHHHHHHHHHSCH-----HHHHTCCHHHHHHHHHHHTHHHHHHH---------
T ss_pred HHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHhcc-----chhhhhcccHHHHHHHHHHHHHHHHH---------
Confidence 56778899999877 5999999999999999987322 110 113677777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
.+|...|++++|+.++++++++ +|....+++++|.+|..+|++++|+.+|++++++. |....+
T Consensus 238 -~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a 300 (338)
T 2if4_A 238 -ACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAI 300 (338)
T ss_dssp -HHHHTTTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred -HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHH
Confidence 6668888888888888888885 34456678888888888888888888888888764 444556
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..++.+.....+..+++...|.+++...|
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 677777743145667788888888887766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-12 Score=87.96 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|++++|+.+|+++++. +.++|....++.++|.+|..+|++++|+.++++++++. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 468999999999999984 22367888999999999999999999999999999874 44467889999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.++. ..|++++|+.++++++...|++
T Consensus 69 ~~~~-~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 69 MVLY-NLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCCc
Confidence 9997 9999999999999999988833
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=98.96 Aligned_cols=103 Identities=19% Similarity=0.120 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| ..+...|++++|+..|++++.. .|....++.++|.+|..+|++++|+..+++++
T Consensus 4 a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 65 (281)
T 2c2l_A 4 AQELKEQG----------NRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65 (281)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46677788 6779999999999999999996 34456788999999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++. |....+++++|.++. .+|++++|+..+++++.+.|+++
T Consensus 66 ~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 66 ELD--------GQSVKAHFFLGQCQL-EMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp TSC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HhC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccch
Confidence 752 555678999999997 99999999999999999998654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-10 Score=101.38 Aligned_cols=155 Identities=9% Similarity=-0.044 Sum_probs=114.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
+|.+++++.+..-.|....++..+|..+ ...|++++|...|++++++ .+.++ ..++...|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~----~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~--------- 363 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYE----ESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYM--------- 363 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHH---------
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHH----HhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHH---------
Confidence 5556666555322456677888899666 6899999999999999985 22222 24667777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRL-YQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+.+.|++++|...|++|++.. +. ....+...|.+ +...|++++|..+|+++++.. |....
T Consensus 364 -~~~~~~~~~~~A~~~~~~Al~~~-----~~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~ 426 (530)
T 2ooe_A 364 -KFARRAEGIKSGRMIFKKAREDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPE 426 (530)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCT-----TC---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHH
T ss_pred -HHHHHhcCHHHHHHHHHHHHhcc-----CC---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHH
Confidence 55588999999999999998741 12 22333344443 446899999999999999875 33456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++..++.++. ..|+.++|..+|++++...+..|
T Consensus 427 ~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 427 YVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHT-TTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHH-hCCCHhhHHHHHHHHHhccCCCH
Confidence 7889999997 99999999999999998765433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=87.19 Aligned_cols=107 Identities=18% Similarity=0.057 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.+..+..+..+| ..+...|++++|+.+|+++++. .++++....++.++|.++...|++++|+.++
T Consensus 24 ~~~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 24 GASSVEQLRKEG----------NELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp TCCCHHHHHHHH----------HHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345677888888 7779999999999999999985 2344445788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 89 ~~~~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 89 SKAIEKD--------GGDVKALYRRSQALE-KLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHT--------SCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHhhC--------ccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 9999863 334677899999997 99999999999999999877
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-11 Score=86.85 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=78.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH----------HHHHHHHHHHHHHHHHhcCCCc
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF----------DEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~ 170 (303)
.+.+.|++|+..+++++++ .|....++.++|.++..++++ ++|+..|++|+++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------
Confidence 5778999999999999996 466678899999999999876 59999999999874
Q ss_pred hHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHML-----------EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g-----------~~~~A~~~~~~al~~~~ 206 (303)
|....+++++|.+|. .+| ++++|+.+|++|+++.|
T Consensus 77 P~~~~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 667788999999997 885 89999999999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-11 Score=83.79 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|..+ ...|++++|+..++++++. +|....++..+| .++...|++++|+..++
T Consensus 18 ~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg----------~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 18 ENPMEEGLSM----LKLANLAEAALAFEAVCQK--------EPEREEAWRSLG----------LTQAENEKDGLAIIALN 75 (121)
T ss_dssp SCHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHH
Confidence 3567888777 5999999999999999987 566678889999 66699999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++++ .|....++.++|.++...|++++|+..+++++++.
T Consensus 76 ~al~l--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 76 HARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99997 34456688999999999999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=80.55 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKA----LSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRS----------AAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHH----HHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHhhccHHHHHHH
Confidence 456788999877 5999999999999999987 344457788889 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+++++.. .|....++.++|.++...|++++|..+++++++.. |....++..++.+.
T Consensus 61 ~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 61 GCKTVDL--------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred HHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence 9999986 23445678999999999999999999999998653 33344566666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-10 Score=98.06 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhhhhhcc---cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSG---RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
++.+||.++ ...| ++++|+.+|+++.+. .+..+..++++|.+|. ......+++++|+.+
T Consensus 178 a~~~Lg~~~----~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~------~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 178 CYVELATVY----QKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLG------DATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHT------CGGGSSCCHHHHHHH
T ss_pred HHHHHHHHH----HHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh------CCCCCCCCHHHHHHH
Confidence 889999777 4789 999999999999875 3344566678884441 001122699999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHH-H--HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRL-Y--QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
|+++. +....++.++|.+ + ...+++++|+.+|+++.+. ....+++++|.+|. .|
T Consensus 240 ~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~--~G 296 (452)
T 3e4b_A 240 LEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY--EG 296 (452)
T ss_dssp HHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH--HC
T ss_pred HHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH--cC
Confidence 99976 1234568899998 4 5689999999999998852 23467899999984 66
Q ss_pred -----CHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-----------hhHHHHhhhccc-cccHHHHHHhHHHHHHh----
Q psy4339 190 -----EYHKAEKLYFRSIEINDNLKLFSASYSGLE-----------YHYRDLKLFSAS-YSGLEYDYRGLIHVYEC---- 248 (303)
Q Consensus 190 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~l~-----------~~~~a~~~~~~~-~~~~~~~~~~la~~~~~---- 248 (303)
++++|+.+|+++. +.++ .++++|+ ...+|+..+... ......+.++||.+|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa---~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV---GREV---AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT---TTCH---HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCHHHHHHHHHHHh---CCCH---HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 9999999999998 4222 2333332 233444222111 11234568899999985
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.+++.+|..+++..
T Consensus 371 ~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 371 KPDPLNAYVFSQLA 384 (452)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56899999966555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9e-11 Score=85.48 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|..+..+..+|..+ ...|++++|+.+|+++++. .++++....++.++| .++...|++++|
T Consensus 24 ~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a----------~~~~~~~~~~~A 84 (148)
T 2dba_A 24 GASSVEQLRKEGNEL----FKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRA----------ACHLKLEDYDKA 84 (148)
T ss_dssp TCCCHHHHHHHHHHH----HTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHH----------HHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHH----------HHHHHHccHHHH
Confidence 345678899999877 5999999999999999875 344444578888999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.++++++.. .|....++.++|.++..+|++++|+.++++++++.
T Consensus 85 ~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 85 ETEASKAIEK--------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999986 23336678899999999999999999999999864
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-11 Score=82.21 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=74.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
.+|++++|+.+|++++++ +.++|....++.++| .+|...|++++|+.+++++++. .|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg----------~~~~~~~~~~~A~~~~~~al~~--------~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLG----------STFRTLGEYRKAEAVLANGVKQ--------FP 58 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 478999999999999875 233677889999999 7779999999999999999996 34
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
....++.++|.++..+|++++|+.++++++...
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 446788999999999999999999999999875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=101.31 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC-CC--------cHHHHHHHHHHHHHHHHhhc
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG-EN--------NVQTAKHYGNIGRLYQSMQK 147 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~~~~la~~~~~~~~ 147 (303)
+..+..+..+| ..+...|++++|+..|++++.+...... .. ......++.++|.+|..+|+
T Consensus 176 ~~~a~~~~~~g----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 176 IGAADRRKMDG----------NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHH----------HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777788 7779999999999999999987422100 00 00011488999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKL 227 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~ 227 (303)
+++|+.++++++++. |....+++++|.+|. .+|++++|+.+|++++.+.|
T Consensus 246 ~~~A~~~~~~al~~~--------p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p--------------------- 295 (338)
T 2if4_A 246 YDEAIGHCNIVLTEE--------EKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAP--------------------- 295 (338)
T ss_dssp CHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC---------------------
Confidence 999999999999863 555678999999997 99999999999999998877
Q ss_pred hccccccHHHHHHhHHHHHH-hhhcHHHHHHHH
Q psy4339 228 FSASYSGLEYDYRGLIHVYE-CLENFEKMTEFT 259 (303)
Q Consensus 228 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~ 259 (303)
....++..++.+.. ..+..+++...+
T Consensus 296 ------~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 296 ------DDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp ---------------------------------
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777744 345555666544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=84.23 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| .++...|++++|+.+++++++.. |....++.++|.++...|++++|+.++++++
T Consensus 6 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 6 PEEYYLEG----------VLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp TTGGGGHH----------HHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556677 66699999999999999999862 3345678899999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHM-LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~-g~~~~A~~~~~~al~~~~ 206 (303)
+.. +. .....++..+|.++. .. |++++|+.++++++...+
T Consensus 68 ~~~-----~~-~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 68 NVI-----ED-EYNKDVWAAKADALR-YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTS-----CC-TTCHHHHHHHHHHHT-TCSSCSHHHHHHHHHHGGGCC
T ss_pred HhC-----cc-cchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhccc
Confidence 763 22 114567899999997 99 999999999999998766
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-10 Score=92.12 Aligned_cols=144 Identities=13% Similarity=-0.055 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
+...++.++ ...|+|++|...|...+. ..|... ..+.+| .++...+++++|+..+++
T Consensus 104 l~LayA~~L----~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a----------~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 104 ITMGFAACE----AAQGNYADAMEALEAAPV--------AGSEHL-VAWMKA----------VVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp HHHHHHHHH----HHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHH----------HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHH----HHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHH----------HHHHHcCCHHHHHHHHHH
Confidence 444556555 689999999999987554 245544 778888 666999999999999986
Q ss_pred HHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHH
Q psy4339 116 ALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 116 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~ 193 (303)
+... .++. ...++.++|.++..+|++++|+.+|++++. ++..|. ...+.+++|.++. .+|+.++
T Consensus 161 a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~-~lGr~de 226 (282)
T 4f3v_A 161 AGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARR-SQGNESA 226 (282)
T ss_dssp GGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHH-HHTCHHH
T ss_pred hhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHH-HcCCHHH
Confidence 5442 2333 345889999999999999999999999873 233244 6778999999998 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSG 217 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~ 217 (303)
|...|++++...|+ +.....+.+
T Consensus 227 A~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 227 AVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999885 444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=87.79 Aligned_cols=186 Identities=11% Similarity=-0.079 Sum_probs=121.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhh
Q psy4339 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDS 97 (303)
Q Consensus 18 al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 97 (303)
++..+++......+. ..++..+|.++ ...|++++|+.++.+++.. ++ .+....++..++
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~----~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~v---------- 143 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQ----AILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAI---------- 143 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHH----HHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHH----------
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHH----HHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHH----------
Confidence 344455544322222 23446888777 5899999999999998653 11 134556666667
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc-HHHHHHHHHH--HHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENN-VQTAKHYGNI--GRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
.++...|+.+.|.+.+++..+.. ++. ...-.+..++ |++....| ++.+|...|+++.+. .|.
T Consensus 144 qi~L~~~r~d~A~k~l~~~~~~~-----~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~ 210 (310)
T 3mv2_B 144 EVALLNNNVSTASTIFDNYTNAI-----EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPT 210 (310)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCS
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-----ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCC
Confidence 66799999999999999987751 100 0012233444 44566667 999999999996532 232
Q ss_pred --HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc--cccHHHHHHhHHHHHHh
Q psy4339 173 --VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS--YSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 173 --~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~ 248 (303)
....+.+ ++. .+|++++|...++..++..| +.-.++ .|..+.++.+++.+...
T Consensus 211 ~~~~~lLln---~~~-~~g~~~eAe~~L~~l~~~~p-------------------~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 211 WKTQLGLLN---LHL-QQRNIAEAQGIVELLLSDYY-------------------SVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp HHHHHHHHH---HHH-HHTCHHHHHHHHHHHHSHHH-------------------HTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHH---HHH-HcCCHHHHHHHHHHHHHhcc-------------------cccccccCCCCCHHHHHHHHHHHHH
Confidence 2233344 787 99999999999998887765 210110 34566778888888888
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.|+ +|.++.+.+
T Consensus 268 lgk--~a~~l~~qL 279 (310)
T 3mv2_B 268 QGL--DTEDLTNQL 279 (310)
T ss_dssp TTC--TTHHHHHHH
T ss_pred hCh--HHHHHHHHH
Confidence 897 777776655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-09 Score=101.14 Aligned_cols=183 Identities=16% Similarity=0.058 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...+|..+|.++ ...|++++|++.|.+| ++ ...+..+| .++...|++++|+++
T Consensus 1104 ~p~vWsqLAKAq----l~~G~~kEAIdsYiKA----------dD---~say~eVa----------~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQ----LQKGMVKEAIDSYIKA----------DD---PSSYMEVV----------QAANTSGNWEELVKY 1156 (1630)
T ss_pred CHHHHHHHHHHH----HhCCCHHHHHHHHHhc----------CC---hHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 356888999877 6999999999999775 22 35566677 777999999999999
Q ss_pred HHHHHHHHHHh------------hCC--------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 113 HQNALVLSLKH------------FGE--------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 113 ~~~al~~~~~~------------~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+..|.+..+.. .+. +.+.. ..+.++|..+...|+|++|..+|.+|
T Consensus 1157 L~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------------- 1221 (1630)
T 1xi4_A 1157 LQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------------- 1221 (1630)
T ss_pred HHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------------
Confidence 99887643110 000 01111 23456788888888888888888774
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
..|..+|.++. .+|++++|++++++|..... -..++.++...+.+..|..... .-...+..+..++..|...|.+
T Consensus 1222 --~ny~rLA~tLv-kLge~q~AIEaarKA~n~~a-Wkev~~acve~~Ef~LA~~cgl-~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 --SNFGRLASTLV-HLGEYQAAVDGARKANSTRT-WKEVCFACVDGKEFRLAQMCGL-HIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred --hHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHH-HHHHHHHHhhhhHHHHHHHHHH-hhhcCHHHHHHHHHHHHHcCCH
Confidence 24667888886 88888888888888744321 1123333333344444442211 1112233466888899999999
Q ss_pred HHHHHHHHHH
Q psy4339 253 EKMTEFTNKL 262 (303)
Q Consensus 253 ~~A~~~~~~~ 262 (303)
++|+.+++..
T Consensus 1297 eEAI~LlE~a 1306 (1630)
T 1xi4_A 1297 EELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHH
Confidence 9999955443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-09 Score=94.42 Aligned_cols=148 Identities=15% Similarity=0.009 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+.+|++.+++....+ +..+..+.+||.+|..-....+++++|+.+|+++. |....++.++|.++
T Consensus 195 ~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~---- 258 (452)
T 3e4b_A 195 QAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLL---- 258 (452)
T ss_dssp HHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHH----
Confidence 334444444433222 33455678999766310011269999999999874 23457788889442
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHhcCCC
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-----KFDEAERMQLKAIAIKEKVLGKD 169 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~ 169 (303)
......+++++|+.+|+++.+. + ...++.+||.+|. .| ++++|+.+|+++.
T Consensus 259 ---~~~~~~~d~~~A~~~~~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---------- 314 (452)
T 3e4b_A 259 ---YDFPELGDVEQMMKYLDNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---------- 314 (452)
T ss_dssp ---HHSGGGCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------
T ss_pred ---HhCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------
Confidence 1114589999999999999862 2 3567889999998 66 9999999999986
Q ss_pred chHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHh
Q psy4339 170 DYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~ 204 (303)
+....+++++|.+|. . ..++++|..+|+++.+.
T Consensus 315 -~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 315 -GREVAADYYLGQIYR-RGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp -TTCHHHHHHHHHHHH-TTTTSSCCHHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHhh
Confidence 122467899999985 4 23999999999999874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=81.94 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
..++..+|.++...|++++|+.++++++++. |....++.++|.++. ..|++++|+.+++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~----- 71 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIE----- 71 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCc-----
Confidence 4457789999999999999999999999863 333567899999997 99999999999999998877
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh-hcHHHHHHHHHHH
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL-ENFEKMTEFTNKL 262 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~ 262 (303)
. .....++..+|.++... |++++|+++++.+
T Consensus 72 --------------~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 72 --------------D------EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp --------------C------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred --------------c------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 11456789999999999 9999999966554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=100.87 Aligned_cols=171 Identities=10% Similarity=-0.029 Sum_probs=135.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc----------HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR----------FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
+|++.+.+++. .+|+...+++..+.++ ...|+ +++++.++.++++. +|....+++..
T Consensus 47 eal~~~~~~l~-~nP~~~taW~~R~~~l----~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR 113 (567)
T 1dce_A 47 SVLELTSQILG-ANPDFATLWNCRREVL----QHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHHHHH-HCTTCHHHHHHHHHHH----HHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHHHH-HCchhHHHHHHHHHHH----HhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 34444444332 2577778899999877 46777 89999999999876 67777888899
Q ss_pred HHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAERMQLKAIAIKE 163 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~ 163 (303)
++++ ...+ +++++++.+.++++. +|....++...+.+....| .++++++++.++++.
T Consensus 114 ~w~l----------~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 114 CWLL----------SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp HHHH----------HTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred HHHH----------HHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 9544 6778 779999999999996 4666788999999999999 899999999998864
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhh--------------cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhc
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHM--------------LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFS 229 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~ 229 (303)
+|....+|++.+.++. .. +.+++|++++.+|+.+.|
T Consensus 174 ------~p~n~saW~~r~~ll~-~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P----------------------- 223 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLP-QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP----------------------- 223 (567)
T ss_dssp ------TCCCHHHHHHHHHHHH-HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-----------------------
T ss_pred ------CCCCccHHHHHHHHHH-hhcccccccccccccHHHHHHHHHHHHHHHhhCC-----------------------
Confidence 3666788999999986 75 678999999999998887
Q ss_pred cccccHHHHHHhHHHHHHhhhcHHH
Q psy4339 230 ASYSGLEYDYRGLIHVYECLENFEK 254 (303)
Q Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~ 254 (303)
....+++.++.++...+++++
T Consensus 224 ----~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 224 ----NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ----SCSHHHHHHHHHHSCCCCCSC
T ss_pred ----CCccHHHHHHHHHhcCCCccc
Confidence 334567788888888877544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-10 Score=81.59 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=73.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh----------HHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----------YKEAELLHQNALVL 119 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~ 119 (303)
+.+.|++|+..+++++++ +|..+.++.++|.++ ...++ +++|+..|++|+++
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l----------~~l~~~~~g~~al~~~~eAi~~le~AL~l 75 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVL----------LELSQFHSISDAKQMIQEAITKFEEALLI 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----------HHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH----------HHhcccchhhhhHhHHHHHHHHHHHHHHh
Confidence 568899999999999988 677778999999444 55554 56999999999997
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHHH
Q psy4339 120 SLKHFGENNVQTAKHYGNIGRLYQSMQ-----------KFDEAERMQLKAIAIK 162 (303)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~ 162 (303)
+|....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 76 --------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 76 --------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4667788999999999885 8999999999999984
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-09 Score=86.09 Aligned_cols=206 Identities=9% Similarity=-0.019 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
.|.+++.+++.+ +|+...+++..+.++ ...| .+++++.++.+++.. +|....+++..++
T Consensus 72 ~AL~lt~~~L~~--------nP~~ytaWn~R~~iL----~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~w 131 (349)
T 3q7a_A 72 RALELTEIIVRM--------NPAHYTVWQYRFSLL----TSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CchhHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHH
Confidence 344445555444 577778889999888 5777 599999999999865 5666788888885
Q ss_pred HHHHHhhhhHHHHhh-h-hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH--------HHHHHHHHH
Q psy4339 89 ILEEIALDSNELISV-Q-FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD--------EAERMQLKA 158 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a 158 (303)
++ ... + ++++++.++.++++. +|....++...+.+....|.++ +++++++++
T Consensus 132 lL----------~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 132 LL----------DRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HH----------HHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HH----------HHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 55 444 5 778888888887763 5666788999999999999988 999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHhhhhhhhh----hhhhhhhhh-------
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-------YHKAEKLYFRSIEINDNLKLF----SASYSGLEY------- 220 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~------- 220 (303)
++.. |....++++.+.++. ..++ ++++++++++++.+.|++... ...+...+.
T Consensus 194 I~~d--------p~N~SAW~~R~~lL~-~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 194 LRVD--------GRNNSAWGWRWYLRV-SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHC--------TTCHHHHHHHHHHHT-TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHhC--------CCCHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 8753 556678999999997 8887 799999999999988854321 111111110
Q ss_pred ----------------hH-HHHhhhcc-----ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 221 ----------------HY-RDLKLFSA-----SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 221 ----------------~~-~a~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+. .+++.... ..+....++.-|+.+|...|+.++|.+.++.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 00 11111111 12345677889999999999999999966655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=72.36 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++....++..+|.++...|++++|+.++++++++. |....++.++|.++. ..|++++|+.++++++.+.|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p- 74 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDP- 74 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC-
Confidence 44567789999999999999999999999999863 334567899999997 99999999999999998877
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
....++.++|.++...|
T Consensus 75 --------------------------~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 --------------------------NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHC
T ss_pred --------------------------CCHHHHHHHHHHHHhcC
Confidence 34456778888877654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=96.01 Aligned_cols=193 Identities=16% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|.+.+++. ++| .++..||.++ ...|++++|++.|.++- ++ ..+..++
T Consensus 19 ld~A~~fae~~---~~~---~vWs~La~A~----l~~g~~~eAIdsfika~----------D~---~~y~~V~------- 68 (449)
T 1b89_A 19 LDRAYEFAERC---NEP---AVWSQLAKAQ----LQKGMVKEAIDSYIKAD----------DP---SSYMEVV------- 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC---CCh---HHHHHHHHHH----HHcCCHHHHHHHHHcCC----------CH---HHHHHHH-------
Confidence 44555555543 233 4888999877 69999999999997631 12 2445555
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHh------------hC--------CCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKH------------FG--------ENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
..+...|++++|+.+++.+++..+.. .| -+.|. ..++.++|..+...|+|++|..+
T Consensus 69 ---~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 69 ---QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTCC-----------------CTTTHHHH
T ss_pred ---HHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 55577889999999888887642110 00 01122 23788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc--cc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA--SY 232 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~--~~ 232 (303)
|.++ ..+..+|.++. .+|++++|++.++++... ..-..+..++-.++.+.+|...... .+
T Consensus 145 Y~~a----------------~n~~~LA~~L~-~Lg~yq~AVea~~KA~~~-~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ 206 (449)
T 1b89_A 145 YNNV----------------SNFGRLASTLV-HLGEYQAAVDGARKANST-RTWKEVCFACVDGKEFRLAQMCGLHIVVH 206 (449)
T ss_dssp HHHT----------------TCHHHHHHHHH-TTTCHHHHHHHHHHHTCH-HHHHHHHHHHHHTTCHHHHHHTTTTTTTC
T ss_pred HHHh----------------hhHHHHHHHHH-HhccHHHHHHHHHHcCCc-hhHHHHHHHHHHcCcHHHHHHHHHHHHhC
Confidence 8865 24678999996 999999999999998321 1113455666666677776532211 34
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+. ...++..|.+.|++++|+.+++..
T Consensus 207 ad~---l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 207 ADE---LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 443 446888999999999999966554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=76.99 Aligned_cols=96 Identities=9% Similarity=-0.035 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
+..+.++|.++...|++++|+.+|++++++. |....++.++|.++. .+|++++|+..+++++.+.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p----- 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTS----- 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCS-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC-----
Confidence 4678899999999999999999999999873 444677899999997 99999999999999999887
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.. ........++..+|.++...|++++|+.
T Consensus 70 --------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 70 --------------TA--EHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp --------------ST--TSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred --------------Cc--cHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 11 0111236678899999999998887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=97.35 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH---------------------HHHHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS---------------------AHRVKALILEE 92 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------------------~~~~la~~~~~ 92 (303)
...+..+|.++ ...|+|++|+.++..|.+..+.. .-+...+. .+..+|
T Consensus 1134 ~say~eVa~~~----~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iG----- 1202 (1630)
T 1xi4_A 1134 PSSYMEVVQAA----NTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVG----- 1202 (1630)
T ss_pred hHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHH-----
Confidence 45777889877 69999999999999887653110 00001111 122344
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH--H------
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE--K------ 164 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~------ 164 (303)
..+...|+|++|..+|.++ ..|..+|.++..+|++++|++.+++|....- .
T Consensus 1203 -----d~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1203 -----DRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred -----HHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 6668888888888888774 2577899999999999999999998854321 0
Q ss_pred ---------hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh------hhhhhhhhhhHHHHhhhc
Q psy4339 165 ---------VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF------SASYSGLEYHYRDLKLFS 229 (303)
Q Consensus 165 ---------~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~l~~~~~a~~~~~ 229 (303)
..|......+..+..++..|. ..|.+++|+.++++++.+.+.|..+ ..+.+..+.+.+.++.+.
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe-~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 001111112234557888997 9999999999999999888765432 222233345555544332
Q ss_pred cc---cc-----cHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 230 AS---YS-----GLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 230 ~~---~~-----~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.. .+ .....|..+..+|.+-|+++.|..
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 21 11 345668889999999999999995
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=74.09 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+..|+++++. .|....++.++|.++...|++++|+.++++++++. |....++.++|.++. .
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~ 65 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQ-G 65 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHH-H
Confidence 467777777763 34445788999999999999999999999999863 445668899999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
.|++++|+.+|++++.+.+
T Consensus 66 ~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999888
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-08 Score=81.51 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc----------HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR----------FTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
++|++....++. -+|+...+++..+.++ ...+. +++++.++..++.. +|....+++.
T Consensus 47 ~eaL~~t~~~L~-~nP~~ytaWn~Rr~iL----~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny~aW~h 113 (331)
T 3dss_A 47 ESVLELTSQILG-ANPDFATLWNCRREVL----QHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHH 113 (331)
T ss_dssp HHHHHHHHHHHT-TCTTCHHHHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HCchhHHHHHHHHHHH----HHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 356666666653 3577777888888777 34444 57777777777765 5666788888
Q ss_pred HHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQK-FDEAERMQLKAIAIK 162 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~ 162 (303)
.++++ ...| .+++++.++.++++. +|....++...+.+....|. ++++++++.++++..
T Consensus 114 R~wlL----------~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 114 RCWLL----------SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHH----------HHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------hccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 88554 5556 489999999999985 56667889999999999999 699999999999753
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhh--------------cCHHHHHHHHHHHHHhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHM--------------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~--------------g~~~~A~~~~~~al~~~~ 206 (303)
|....++++.+.++. .. +.++++++++.+++.+.|
T Consensus 176 --------p~N~SAW~~R~~ll~-~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 176 --------FSNYSSWHYRSCLLP-QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp --------SCCHHHHHHHHHHHH-HHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred --------CCCHHHHHHHHHHHH-HhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 556678899999986 77 668999999999999888
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-07 Score=78.72 Aligned_cols=153 Identities=6% Similarity=-0.073 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
.++++++....++. .+|....+++..++++ ...| .+++++.++.++++. +|....+++..+++.
T Consensus 89 ~l~~EL~~~~~~L~-~~PKny~aW~hR~wlL----~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl- 154 (331)
T 3dss_A 89 LVKAELGFLESCLR-VNPKSYGTWHHRCWLL----SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVA- 154 (331)
T ss_dssp HHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH----HHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH----hccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-
Confidence 35566666555542 3577788999999888 5677 489999999999987 566667788888444
Q ss_pred HHhhhhHHHHhhhh-HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------------hcHHHHHHHHH
Q psy4339 92 EIALDSNELISVQF-YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------------QKFDEAERMQL 156 (303)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~ 156 (303)
...|. ++++++++.+++.. +|....++++.+.++... +.++++++++.
T Consensus 155 ---------~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 155 ---------AQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp ---------HHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred ---------HHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 56676 68999999999985 566677899999998887 67999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh-----------cCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM-----------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------g~~~~A~~~~~~al~~~~ 206 (303)
+++.+. |....+++.+..++. .. +.++++++++++++++.|
T Consensus 218 ~ai~~~--------P~d~SaW~Y~r~ll~-~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 218 NAFFTD--------PNDQSAWFYHRWLLG-AGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHH-SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhC--------CCCHHHHHHHHHHHH-hccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 999864 555566766655554 44 468899999999998887
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=71.79 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.+|. ..|++++|+..+++++.+.+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhh
Confidence 35566789999999999999999999999999874 444568999999997 99999999999999999987
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.95 E-value=7e-09 Score=72.21 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+|+..|+++++. +|....++.++| .++...|++++|+.++++++.. .|....++
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLG----------KTYAEHEQFDAALPHLRAALDF--------DPTYSVAW 56 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHH--------CCCcHHHH
Confidence 577788887765 445567888999 6779999999999999999986 34456688
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.++|.++..+|++++|+.+|++++++...
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-10 Score=78.39 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| .++...|++++|+..|++++++ .|....++.++|.++..+|++++|+.++++++
T Consensus 4 ~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQG----------NSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHH----------HHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667778 7779999999999999999996 23446678999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
++.... .+......++..+|.++. ..|++++|+..++
T Consensus 66 ~~~p~~--~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 66 RYTSTA--EHVAIRSKLQYRLELAQG-AVGSVQIPVVEVD 102 (111)
T ss_dssp TSCSST--TSHHHHHHHHHHHHHHHH-HHHCCCCCSSSSS
T ss_pred HhCCCc--cHHHHHHHHHHHHHHHHH-HHHhHhhhHhHHH
Confidence 764110 011123677889999997 8998877765544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=66.95 Aligned_cols=88 Identities=25% Similarity=0.164 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.+++++++. .|....++.++| .++...|++++
T Consensus 4 ~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~ 61 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLG----------NAYYKQGDYDE 61 (91)
T ss_dssp --CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred cccccHHHHHHHHHHH----HHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHH----------HHHHHHhhHHH
Confidence 3456778999999877 5999999999999999987 344457788899 67799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
|+.+++++++. .|....++.++|.++..+|
T Consensus 62 A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 62 AIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence 99999999986 2444567889999887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=72.88 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=91.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
.+++++|+.+|+++.+. .++. +. +| .+|...+..++|+.+|+++.+. .
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~~---a~--lg----------~~y~~g~~~~~A~~~~~~Aa~~-------g--- 55 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEMF---GC--LS----------LVSNSQINKQKLFQYLSKACEL-------N--- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCTT---HH--HH----------HHTCTTSCHHHHHHHHHHHHHT-------T---
T ss_pred ccCHHHHHHHHHHHHcC-------CCHh---hh--HH----------HHHHcCCCHHHHHHHHHHHHcC-------C---
Confidence 46889999999999765 2232 11 78 5567788889999999999874 2
Q ss_pred HHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSI 202 (303)
Q Consensus 131 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al 202 (303)
...+..+||.+|.. .+++++|+.+|++|.+. ....++++||.+|. . .+++++|+.+|+++.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHH
Confidence 34678899999999 89999999999999863 12467899999997 8 899999999999998
Q ss_pred Hhhh
Q psy4339 203 EIND 206 (303)
Q Consensus 203 ~~~~ 206 (303)
+...
T Consensus 125 ~~g~ 128 (138)
T 1klx_A 125 RLGS 128 (138)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=76.89 Aligned_cols=170 Identities=8% Similarity=-0.140 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc--hhhhHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN--HLLLTSAHRVKALI 89 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~ 89 (303)
.-+++|++.+.+.++.+. +...++...++.++ ..+|+.+.|.+.+++..+.. ++ ..+ -.+...++..
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~----L~~~r~d~A~k~l~~~~~~~-----~d~~~~~-d~~l~~Laea 183 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA----LLNNNVSTASTIFDNYTNAI-----EDTVSGD-NEMILNLAES 183 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHS-----CHHHHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhcC-----ccccccc-hHHHHHHHHH
Confidence 346678888777665443 46778888888777 69999999999999876651 10 001 1222333322
Q ss_pred HHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 90 LEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQ--TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
.+....| ++.+|..+|++.... .|. ....+.+ ++..+|++++|...++..++..-..
T Consensus 184 --------~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 184 --------YIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp --------HHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred --------HHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 1123345 899999999996542 222 2223333 8999999999999999776654211
Q ss_pred cCCC--chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 166 LGKD--DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 166 ~~~~--~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
-..+ .|..+.++.|+..+.. .+|+ +|.++++++.+..|+||.+...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 0000 2456677888888886 8998 8999999999999866654433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-07 Score=83.33 Aligned_cols=151 Identities=8% Similarity=-0.020 Sum_probs=121.5
Q ss_pred hcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh----------HHHHHHHHHHHHH
Q psy4339 50 SSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----------YKEAELLHQNALV 118 (303)
Q Consensus 50 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~ 118 (303)
..|.+ ++|+..+.+++.+ +|....+++..+.++ ...|+ +++++..+.+++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l----------~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 101 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVL----------QHLETEKSPEESAALVKAELGFLESCLR 101 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----------HHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHH----------HhcccccchhhhhhhHHHHHHHHHHHHH
Confidence 34444 6789999999988 677778888889444 56666 8999999999988
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHH
Q psy4339 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAE 195 (303)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~ 195 (303)
. +|....++.+.+.++...+ ++++++.++.+++++. |....+|...+.+.. ..| .+++++
T Consensus 102 ~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~-~l~~~~~~el 164 (567)
T 1dce_A 102 V--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAA-QAAVAPAEEL 164 (567)
T ss_dssp H--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTCCCHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHH-HcCCChHHHH
Confidence 5 5667788999999999999 7799999999999874 556788999999997 999 899999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh--------------hcHHHHHHHH-H
Q psy4339 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL--------------ENFEKMTEFT-N 260 (303)
Q Consensus 196 ~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~-~ 260 (303)
+++.++++..+ ....+++..+.++... +.+++|+++. +
T Consensus 165 ~~~~~~I~~~p---------------------------~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 165 AFTDSLITRNF---------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HHHHTTTTTTC---------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---------------------------CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 99999987666 4556677777777764 6678888844 4
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
++
T Consensus 218 ai 219 (567)
T 1dce_A 218 AF 219 (567)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=75.81 Aligned_cols=178 Identities=7% Similarity=-0.100 Sum_probs=133.8
Q ss_pred hcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCC
Q psy4339 50 SSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGE 126 (303)
Q Consensus 50 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 126 (303)
..|.+ ++|+..+.+++.+ +|....+.+..+ .+....| .+++++..+.+++..
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~----------~~L~~l~~~~~~eeL~~~~~~L~~------- 98 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--------LASHYTIWIYRF----------NILKNLPNRNLYDELDWCEEIALD------- 98 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHTCTTSCHHHHHHHHHHHHHH-------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHH----------HHHHHcccccHHHHHHHHHHHHHH-------
Confidence 45555 6899999999998 677778888889 4447777 999999999999985
Q ss_pred CcHHHHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH--HHHHH
Q psy4339 127 NNVQTAKHYGNIGRLY----QSM---QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH--KAEKL 197 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~--~A~~~ 197 (303)
+|....+++..+.++ ... +++++++.++.++++.. |....+++..+.+.. ..|.++ +++++
T Consensus 99 -nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~-~l~~~~~~~EL~~ 168 (306)
T 3dra_A 99 -NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVD-TFDLHNDAKELSF 168 (306)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCTTCHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HhcccChHHHHHH
Confidence 455567788888888 666 78999999999999763 666788999999998 999998 99999
Q ss_pred HHHHHHhhhhhhh----hhhhhhhhhh------hHHHHh---hhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 198 YFRSIEINDNLKL----FSASYSGLEY------HYRDLK---LFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 198 ~~~al~~~~~~~~----~~~~~~~l~~------~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++++++..+.+.. -...+..++. +.++++ ..-..+|....+++.++.++...|+..++.. +...+
T Consensus 169 ~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 169 VDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999988774321 1122222222 333432 2234578899999999999999998666554 55443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-08 Score=67.37 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|....++.++| .++...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+..+
T Consensus 3 ~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 3 DPEDPFTRYALA----------QEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp --CCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667888999 7779999999999999999996 3444568999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4339 156 LKAIAIKEK 164 (303)
Q Consensus 156 ~~al~~~~~ 164 (303)
++++++...
T Consensus 65 ~~al~l~~~ 73 (100)
T 3ma5_A 65 AQGIEVARE 73 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhc
Confidence 999998754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-08 Score=69.57 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=89.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..+++++|+.+|+++.+. .++.. . +|.+|...+.+++|+++|+++.+. ....+++++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~-------g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg 64 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACEL-------NEMFG---C--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcC-------CCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHH
Confidence 357899999999999874 23322 2 999999999999999999999863 1246789999
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh----hhcHH
Q psy4339 182 SLYNYH----MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC----LENFE 253 (303)
Q Consensus 182 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 253 (303)
.+|. . .+++++|+.+|+++.+.. ...+.++||.+|.. .++++
T Consensus 65 ~~y~-~G~g~~~d~~~A~~~~~~Aa~~g-----------------------------~~~a~~~Lg~~y~~G~g~~~d~~ 114 (138)
T 1klx_A 65 DFYE-NGKYVKKDLRKAAQYYSKACGLN-----------------------------DQDGCLILGYKQYAGKGVVKNEK 114 (138)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHHHHHTT-----------------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHH-cCCCCCccHHHHHHHHHHHHcCC-----------------------------CHHHHHHHHHHHHCCCCCCcCHH
Confidence 9997 7 789999999999997542 34568999999999 99999
Q ss_pred HHHHHHHHH
Q psy4339 254 KMTEFTNKL 262 (303)
Q Consensus 254 ~A~~~~~~~ 262 (303)
+|.++++..
T Consensus 115 ~A~~~~~~A 123 (138)
T 1klx_A 115 QAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999966554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=80.43 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=81.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|+|++|++.++++. + ..++..++.++...|+|+.|..+.... ..+|+. .
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l 210 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---L 210 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---H
T ss_pred HHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---H
Confidence 44455555555555555541 1 233445555555555665554443321 123443 2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh------hhhhhhhhhhhHHHHhhhccc--cc------cHHHHHHhHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL------FSASYSGLEYHYRDLKLFSAS--YS------GLEYDYRGLI 243 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~l~~~~~a~~~~~~~--~~------~~~~~~~~la 243 (303)
..+...|. +.|++++|+.++++++.+.+.|.. +..+.+..+.+.+.++.+... .| .....+..+.
T Consensus 211 ~~lv~~Ye-k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35778898 999999999999999988775532 233334445666665544322 11 2234577899
Q ss_pred HHHHhhhcHHHHHH
Q psy4339 244 HVYECLENFEKMTE 257 (303)
Q Consensus 244 ~~~~~~g~~~~A~~ 257 (303)
.+|...++++.|..
T Consensus 290 ~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 290 FLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhhchHHHHHH
Confidence 99999999999987
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-07 Score=74.92 Aligned_cols=163 Identities=9% Similarity=-0.036 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A 109 (303)
|+...++..+..+. ...+..++|+.++.+++.+ +|....+++..+. +....| .++++
T Consensus 51 ~~y~~~~~~~r~~~----~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~----------iL~~l~~~l~eE 108 (349)
T 3q7a_A 51 EEYKDAMDYFRAIA----AKEEKSERALELTEIIVRM--------NPAHYTVWQYRFS----------LLTSLNKSLEDE 108 (349)
T ss_dssp HHHHHHHHHHHHHH----HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHH----------HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHH----------HHHHhhhhHHHH
Confidence 44455666665444 4566668899999999988 6777788888884 446677 59999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-Q-KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+..+.+++.. +|....+++..+.++... + ++++++.++.++++. +|....++...+.+.. .
T Consensus 109 L~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~-~ 171 (349)
T 3q7a_A 109 LRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYS-H 171 (349)
T ss_dssp HHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH-H
Confidence 9999999874 566678899999999998 7 899999999988853 3666778999999997 8
Q ss_pred hcCHH--------HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc-------H
Q psy4339 188 MLEYH--------KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN-------F 252 (303)
Q Consensus 188 ~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-------~ 252 (303)
.|.++ +++++++++++..+ ....+++..+.+....++ +
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp---------------------------~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDG---------------------------RNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHhccccccchHHH
Confidence 88888 89999999888766 445567777777777765 5
Q ss_pred HHHHHHH
Q psy4339 253 EKMTEFT 259 (303)
Q Consensus 253 ~~A~~~~ 259 (303)
++++++.
T Consensus 225 ~eELe~~ 231 (349)
T 3q7a_A 225 QDELIYI 231 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=62.51 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=61.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK-HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
..+...|++++|+..++++++. .|.... ++.++|.+|..+|++++|+.+|++++++. ++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--- 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-----PDSPAL--- 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHH---
Confidence 5668889999999999998885 233345 78889999999999999999999998764 333321
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ ..+.+.+++.+|++++...|
T Consensus 72 ~---------~~~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 72 Q---------ARKMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp H---------HHHHHHHHHHHHCCTTHHHH
T ss_pred H---------HHHHHHHHHHHHHHHhccCc
Confidence 1 12556677778887777666
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-05 Score=66.86 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++.+|+.+|++|+++ +|..+.++..+++++. .....+ .-.....-...++...... ...|
T Consensus 212 ~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~-------~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~ 274 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQS--------SPEFTYARAEKALVDI-------VRHSQHPLDEKQLAALNTEIDNIVTL--PELN 274 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH-------HHHHHSCCCHHHHHHHHHHHHHHHTC--GGGT
T ss_pred HHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH-------HHhccCCCchhhHHHHHHHHHHHHhc--ccCC
Confidence 45678999999999998 7787788877776552 111111 1111222233333322111 2345
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....++..+|..+...|++++|+..+++|+.+. |. ...+..+|.++. ..|++++|++.|.+|+.+.|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 566778888998998999999999999999873 22 456788999998 89999999999999999988
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-05 Score=71.45 Aligned_cols=213 Identities=8% Similarity=-0.091 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHH-HHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESR-RHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
...|++|+.. .|.....+...+..+ ...|+.++|. ..|++|+.. .|.....+...+
T Consensus 329 ~~~Ye~aL~~--------~p~~~~lW~~ya~~~----~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a--- 385 (679)
T 4e6h_A 329 TYVYMQAAQH--------VCFAPEIWFNMANYQ----GEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLS--- 385 (679)
T ss_dssp HHHHHHHHHH--------TTTCHHHHHHHHHHH----HHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHH---
T ss_pred HHHHHHHHHH--------cCCCHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHH---
Confidence 3445555544 344556777777544 5788888997 999999875 233334444455
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh------CCC--------cHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALVLSLKHF------GEN--------NVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
......|+++.|...|++++....... .+. +.....++...+.+....|..+.|...|.
T Consensus 386 -------~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 386 -------EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -------HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555788999999999999998642111 011 01244567888888888999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhhhhhhhhhhhhhhh----hhHHHH---hhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEINDNLKLFSASYSGLE----YHYRDL---KLF 228 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l~----~~~~a~---~~~ 228 (303)
+|++.. + +....++...|.+-. ..| +++.|..+|+++++..++.+.+-..|..+. ...+|- +..
T Consensus 459 ~A~~~~----~---~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 459 KCRRLK----K---LVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHTG----G---GSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhc----C---CCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 998641 1 111234556666664 655 489999999999999997776544444332 222221 111
Q ss_pred ccccc---cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 SASYS---GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....+ .....+......-...|+.+.+.+..+.+
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 34456667777777889999888866554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=58.89 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL-SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.|.++...|++++|+..++++++.. |.... ++.++|.++. .+|++++|+.+|++++.+.|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999863 44455 8899999997 99999999999999999888
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-06 Score=57.17 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-.+.+|..+...|+|..|+..+++|++...... ...+....++..+|.++. .+|++++|+.++++++.+.|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCC
Confidence 3467899999999999999999999998764321 112446678999999996 99999999999999999888
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-05 Score=66.45 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=88.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...+..|..+|++|+++ +|+.+.++..++.++...+...+.-.....-..+++..... ....|..+.++.
T Consensus 212 ~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~~~~~~~a~~~~ 281 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LPELNNLSIIYQ 281 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--CGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--cccCCcCHHHHH
Confidence 44567888888888877 67777788877766642112221112222333444443222 133455666777
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+| ..+...|++++|+..+++|+.+. |. ..++..+|.++...|++++|++.|.+|+.+.
T Consensus 282 ala----------l~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 282 IKA----------VSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHH----------HHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHH----------HHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777 44477899999999999999971 22 4567889999999999999999999999874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-05 Score=62.52 Aligned_cols=116 Identities=8% Similarity=-0.098 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHH
Q psy4339 76 HLLLTSAHRVKALILEEIALD-SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFD 149 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~ 149 (303)
++.-...++..|.++....-. ..-....+....|...+++|+++- .......++..+|.+|... |+.+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 344566677777666332110 011234556788999999999971 2233677999999999995 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDDYEV-GLSVGHLASLYNYH-MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~-~g~~~~A~~~~~~al~~~~ 206 (303)
+|..+|++|+++. |.. +.+.+..|..+. . +|++++|..++++++...+
T Consensus 222 kA~~~ferAL~Ln--------P~~~id~~v~YA~~l~-~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 222 KAHTAFEHLTRYC--------SAHDPDHHITYADALC-IPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHC--------CTTCSHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhC--------CCCCchHHHHHHHHHH-HhcCCHHHHHHHHHHHHcCCC
Confidence 9999999999985 432 567788899886 6 5999999999999999877
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=54.71 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|+|..|+.+|++|+....... ...+....++.++|.++..+|++++|+.++++++++. +++ ..+.
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-----P~~---~~~~ 83 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEH---QRAN 83 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC---HHHH
Confidence 777999999999999999999865321 1123456788999999999999999999999999864 343 3445
Q ss_pred HHHH
Q psy4339 178 GHLA 181 (303)
Q Consensus 178 ~~la 181 (303)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.4e-05 Score=67.64 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=105.3
Q ss_pred hHHH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cchh-------
Q psy4339 9 KNLS-LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---ENHL------- 77 (303)
Q Consensus 9 ~~a~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~------- 77 (303)
+.|. ++|++|+.. .|.....+...+... ...|++++|...|++++........ +..|
T Consensus 360 ~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~e----e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 360 STVITKYLKLGQQC--------IPNSAVLAFSLSEQY----ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp TTHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 4554 777777643 233334556666444 6889999999999999987421100 0001
Q ss_pred ----hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHH
Q psy4339 78 ----LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAE 152 (303)
Q Consensus 78 ----~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~ 152 (303)
....++...+ ....+.|..+.|...|.+|++... .. ....+...|.+-...+ +++.|.
T Consensus 428 ~~~~~~~~vWi~y~----------~~erR~~~l~~AR~vf~~A~~~~~----~~---~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 428 QLKSKLTYVYCVYM----------NTMKRIQGLAASRKIFGKCRRLKK----LV---TPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHCHHHHHHHHHHHHHTGG----GS---CTHHHHHHHHHHHTTTSCCHHHH
T ss_pred hhccchHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhcC----CC---ChHHHHHHHHHHHHhCCCHHHHH
Confidence 1222333333 444778899999999999987411 11 1234555666666655 489999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..|+++++.. ++.+. .+...+.... ..|+.+.|..+|++++...+
T Consensus 491 ~ife~~Lk~~-----p~~~~---~w~~y~~fe~-~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 491 KVLELGLKYF-----ATDGE---YINKYLDFLI-YVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHH-----TTCHH---HHHHHHHHHH-HHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHC-----CCchH---HHHHHHHHHH-hCCCHHHHHHHHHHHHHhcC
Confidence 9999999875 33343 3456677776 89999999999999998776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=57.76 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCch-HHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAERMQLKAIAIKEKVLGKDDY-EVGLSVG 178 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~ 178 (303)
.+....+.+.|.+.+.. .+....+.+++|+++...+ +.++++.++++.++. +.| ....+++
T Consensus 11 ~~~l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY 75 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHH
Confidence 34555666666666541 2245678899999999977 777999999998874 224 5678999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 179 HLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 179 ~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++|..+. +.|+|++|..++++++++.|+++
T Consensus 76 ~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 76 YLAVGNY-RLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHhcCCCCH
Confidence 9999995 99999999999999999998433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00017 Score=63.46 Aligned_cols=165 Identities=15% Similarity=0.005 Sum_probs=110.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
.+.|++++|+..|.+..+. +-.|+. .+++.+-..+...+.. ......+..++|.+.|.+.... .-.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~------Gv~pd~-~tyn~Li~~c~~~~~~-~~~~~~~~l~~A~~lf~~M~~~------G~~ 102 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRN------GVQLSQ-YHYNVLLYVCSLAEAA-TESSPNPGLSRGFDIFKQMIVD------KVV 102 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHH------TCCCCH-HHHHHHHHHHTTCCCC-SSSSCCHHHHHHHHHHHHHHHT------TCC
T ss_pred HhCCCHHHHHHHHHHHHHc------CCCCCH-hHHHHHHHHHHhCCch-hhhhhcchHHHHHHHHHHHHHh------CCC
Confidence 6999999999999987654 122322 2333222011000000 0012345678888888876542 122
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
| ...+|+.+-..|...|++++|..++++..+. .-.|+ ..+++.+-..|. +.|+.++|..++++..+..-
T Consensus 103 P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~-- 171 (501)
T 4g26_A 103 P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFC-RKGDADKAYEVDAHMVESEV-- 171 (501)
T ss_dssp C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTC--
T ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHH-HCCCHHHHHHHHHHHHhcCC--
Confidence 3 3457889999999999999999999987542 12233 356788888887 99999999999998764322
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.|+ ...+..|-..+.+.|+.++|.++++.+
T Consensus 172 -----------------------~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 172 -----------------------VPE-EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp -----------------------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------CCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 223 345788889999999999999977665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00088 Score=56.50 Aligned_cols=185 Identities=8% Similarity=-0.070 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.+...||..| ...|++++-..++......+... .....+.+..++-..+. ..-+..+.-++.+.
T Consensus 20 ~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~---------~~~~~~~~~~~~~~ 83 (394)
T 3txn_A 20 QGILQQGELY----KQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFL---------DMDAGTGIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHH----HHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHT---------TSCCCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHh---------cCCCcHHHHHHHHH
Confidence 5788899766 69999999888888765554332 11223333333321110 12344566677777
Q ss_pred HHHHHHHHhhCCCcHHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 115 NALVLSLKHFGENNVQTA--KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
++++..+.. ..... ..-..+|.+|...|+|.+|.+.+.+..+-..+. .+......++..-..+|. .+|++.
T Consensus 84 ~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~-~~~n~~ 156 (394)
T 3txn_A 84 DCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYH-ALSNLP 156 (394)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHH-HhccHH
Confidence 777776532 22222 244589999999999999999999998877653 345677788888999997 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHH-hhhcHHHHHH-HHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYE-CLENFEKMTE-FTNKLS 263 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~-~~~~~~ 263 (303)
++...+.+|..+.. .. ..+|. .+.....-|.++. ..++|.+|.. ++++..
T Consensus 157 k~k~~l~~a~~~~~-------------------ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 157 KARAALTSARTTAN-------------------AI--YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHH-------------------HS--CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc-------------------cC--CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 99999999988776 22 13443 4445556777778 7999999999 777753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=51.98 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQK---FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.....+..+|.++...++ .++|..++++++++. |....+...+|..+. ..|+|++|+.+++++++..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 345667888999877666 799999999999874 666778899999996 99999999999999998877
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=52.70 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC-
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN- 127 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~- 127 (303)
..|.|+.|+-....++.+.+.....-.|. ...++..+| ++++..++|..|...|++|+...+.+....
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~la----------dalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHA----------DSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH----------HHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999988865532222333 667888888 777999999999999999999876432111
Q ss_pred ----------------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 128 ----------------NVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 128 ----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
.+......+.+|.||..++++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 112236778899999999999999988764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-05 Score=51.02 Aligned_cols=68 Identities=22% Similarity=0.060 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc--HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGR--FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
|+.+..+..+|.++| ...+. .++|..++++++++ +|....++..+| ..+...|+|++
T Consensus 3 p~~~~~~~~~a~al~---~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg----------~~~~~~g~y~~ 61 (93)
T 3bee_A 3 AVTATQLAAKATTLY---YLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIA----------NDHFISFRFQE 61 (93)
T ss_dssp CCCHHHHHHHHHHHH---HTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHH----------HHHHHcCCHHH
Confidence 445678888888886 33332 79999999999998 677778888899 67799999999
Q ss_pred HHHHHHHHHHH
Q psy4339 109 AELLHQNALVL 119 (303)
Q Consensus 109 A~~~~~~al~~ 119 (303)
|+.+++++++.
T Consensus 62 Ai~~w~~~l~~ 72 (93)
T 3bee_A 62 AIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999885
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0043 Score=49.66 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHH-----------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh-----cCHH
Q psy4339 129 VQTAKHYGNIGRLYQS-----------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM-----LEYH 192 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~-----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----g~~~ 192 (303)
+..+..++..|.+... .+...+|...+++|+++.. ......++..+|.+|. .. |+.+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP------~~~~GsA~~~LG~lY~-~vPp~~gGd~e 221 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWP------SYQEGAVWNVLTKFYA-AAPESFGGGME 221 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCT------THHHHHHHHHHHHHHH-HSCTTTTCCHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCC------CcccCHHHHHHHHHHH-hCCCccCCCHH
Confidence 4445555555555533 2345788888999988741 1235779999999995 74 9999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh-hhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC-LENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 262 (303)
+|..+|++|+++.| + ....++...|..+.. +|++++|..+++.+
T Consensus 222 kA~~~ferAL~LnP------------------------~--~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 222 KAHTAFEHLTRYCS------------------------A--HDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHHCC------------------------T--TCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC------------------------C--CCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999988 1 124457788998888 59999999966554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00033 Score=50.85 Aligned_cols=102 Identities=13% Similarity=-0.025 Sum_probs=77.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGE-NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD------- 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------- 169 (303)
......|.|+.|+-....++.+....... .+.....++..+|..++..++|..|...|++|+...+......
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 44478899999999999999887543211 1234567889999999999999999999999999876432111
Q ss_pred ----------chHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 170 ----------DYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 170 ----------~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
.+....+.+.+|.||. .+|++++|+..++.
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~-~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYT-VLKQDKDAIAILDG 147 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHH-HTTCHHHHHHHHHT
T ss_pred ccCCCcccccccchHHHHHHHHHHHH-HHCCHHHHHHHHhc
Confidence 1122367789999998 99999999988754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0008 Score=48.44 Aligned_cols=86 Identities=7% Similarity=0.007 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh---hHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ---FYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+....+.+.|.+.+.. .+....+..++|+++ ...+ +.++++..++..++. +.
T Consensus 12 ~~l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~L----------v~S~~~~~~~~gI~lLe~ll~~-------~~ 66 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCL----------VRSKYNDDIRKGIVLLEELLPK-------GS 66 (152)
T ss_dssp HHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHH----------HTCSSHHHHHHHHHHHHHHHHH-------SC
T ss_pred HHHHHHHHHHHHHHcc--------CCCcHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHhc-------CC
Confidence 3444555556555432 223557788888554 4544 888999999998884 23
Q ss_pred H-HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 V-QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
| ....+++++|..+.++|+|++|.+++++++++.
T Consensus 67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4 567889999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00084 Score=59.02 Aligned_cols=121 Identities=10% Similarity=-0.053 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
++.++|...|.+.... +-.|+ ..+++.+- ..|...|++++|.+++++..+. .-.| .
T Consensus 84 ~~l~~A~~lf~~M~~~------G~~Pd-~~tyn~lI----------~~~~~~g~~~~A~~l~~~M~~~------g~~P-d 139 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVD------KVVPN-EATFTNGA----------RLAVAKDDPEMAFDMVKQMKAF------GIQP-R 139 (501)
T ss_dssp HHHHHHHHHHHHHHHT------TCCCC-HHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHT------TCCC-C
T ss_pred chHHHHHHHHHHHHHh------CCCCC-HHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHc------CCCC-c
Confidence 3467788877765432 12233 24555555 7778999999999999887652 1123 3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..+|+.+-..|...|+.++|.+++++..+. +-.|+ ..++..+-.+|. +.|+.++|..++++.-+.
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~Pd-~~ty~~Li~~~~-~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVPE-EPELAALLKVSM-DTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHh-hCCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999987642 22233 346788888998 999999999999987553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.045 Score=46.13 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=82.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~ 176 (303)
..|...|+|.+|...+.+.++-+++. .+......++..-..+|..++++.++...+.+|..+....+ .+|.. +..
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i 182 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQGAL 182 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHH
Confidence 77799999999999999999987764 34567778899999999999999999999999998876542 34543 444
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNY-HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~-~~g~~~~A~~~~~~al~~~~ 206 (303)
...-|.++ . ..++|.+|-.+|-+++.-+.
T Consensus 183 ~~~~Gi~~-l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILH-AADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHH-HHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHH-HHhccCHHHHHHHHHHHHhccc
Confidence 44555555 4 58999999999999976554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0041 Score=43.09 Aligned_cols=91 Identities=16% Similarity=-0.033 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHH---HHHHHHHHHHHHHHhcCCCch-HHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDE---AERMQLKAIAIKEKVLGKDDY-EVGLSV 177 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~ 177 (303)
.......+...|.+.+.. + +....+.+++|+++....+... ++.+++..+ ..+.| .....+
T Consensus 13 ~~~~l~~~~~~y~~e~~~-------~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~l 77 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-------G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-------S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcc-------C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHH
Confidence 344555666666665542 1 1345678899999998776654 555555543 34434 677889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+.+|..+. +.|+|++|..+++..+++.|++
T Consensus 78 Y~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 78 FYLAVGNY-RLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHhCCCC
Confidence 99999995 9999999999999999998833
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=42.02 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
++-.+.|++|+..............+..+...|.. ...++.++|...|+.++.+. ...+.++...|..-.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h--------KkFAKiwi~~AqFEi- 105 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC--------KKFAFVHISFAQFEL- 105 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC--------TTBHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHH-
Confidence 77778888888864322122334567777788866 56799999999999999861 223788889999998
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
++|+.+.|...+.+|+.+.+
T Consensus 106 Rqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 106 SQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HTTCHHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHhccCC
Confidence 99999999999999999887
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.04 E-value=0.14 Score=44.73 Aligned_cols=188 Identities=8% Similarity=-0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
...+...+..+ ...|+.++|...|++|+.. . .+..+ ....+.. ...++ . +
T Consensus 213 ~~lW~~ya~~~----~~~~~~~~ar~i~erAi~~-P-----~~~~l---~~~y~~~-----------~e~~~---~---~ 262 (493)
T 2uy1_A 213 EEVYFFYSEYL----IGIGQKEKAKKVVERGIEM-S-----DGMFL---SLYYGLV-----------MDEEA---V---Y 262 (493)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH-C-----CSSHH---HHHHHHH-----------TTCTH---H---H
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHhC-C-----CcHHH---HHHHHhh-----------cchhH---H---H
Confidence 56677777444 5889999999999999987 2 12211 1111100 01111 1 1
Q ss_pred HHHHHH---HHHhhC--CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 114 QNALVL---SLKHFG--ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 114 ~~al~~---~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
++.... .....+ ..++.....+...+......+..+.|...|++| .. . +. ....+...|.+-. ..
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~-~~---~~~v~i~~A~lE~-~~ 332 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E-GV---GPHVFIYCAFIEY-YA 332 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S-CC---CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C-CC---ChHHHHHHHHHHH-HH
Confidence 111111 100000 012233456777788888888899999999888 21 1 11 2234555566553 55
Q ss_pred c-CHHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 189 L-EYHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 189 g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
| +.+.|...|+.+++..++.|.+...|..+ +...++-..+... +.....+......-...|+.+.+.+ +.++.
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 58899999999998877666543333222 1122222111111 1123445555555566788888887 55555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.62 E-value=0.23 Score=43.47 Aligned_cols=167 Identities=8% Similarity=-0.054 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
+.....|++++... |....++...+ ......|+.++|...|++|+.. . .....
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya----------~~~~~~~~~~~ar~i~erAi~~-P-----~~~~l--- 248 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYS----------EYLIGIGQKEKAKKVVERGIEM-S-----DGMFL--- 248 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH-C-----CSSHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhC-C-----CcHHH---
Confidence 44567888877652 23345555556 4447889999999999999986 2 22221
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-hhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG--KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-LKLF 211 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 211 (303)
+...+... ..+ +...-+.++....+...+ ..++....++...+.... ..|..+.|...|.+| . .+. .+.+
T Consensus 249 ~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~-r~~~~~~AR~i~~~A-~-~~~~~~~v 321 (493)
T 2uy1_A 249 SLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL-KKRGLELFRKLFIEL-G-NEGVGPHV 321 (493)
T ss_dssp HHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH-T-TSCCCHHH
T ss_pred HHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH-HcCCHHHHHHHHHHh-h-CCCCChHH
Confidence 21222211 111 111111111111111000 112334466778888887 889999999999999 3 221 1111
Q ss_pred hhhhhhh----h--------hhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 212 SASYSGL----E--------YHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 212 ~~~~~~l----~--------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
-.....+ + .+.++++.++ ..|. .+...+......|+.+.|...+
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~---~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTL---LKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHH---HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHH---HHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111 1 1223334332 2232 3445566677788888877543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.097 Score=36.19 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL-LLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
....+.+++|+++ ....+... .++++.+++..+..+.| ....+++.+| ..+.+.|+|++|.
T Consensus 33 ~s~~~~F~yAw~L----v~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LA----------vg~yklg~Y~~A~ 94 (126)
T 1nzn_A 33 VSKSTQFEYAWCL----VRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLA----------VGNYRLKEYEKAL 94 (126)
T ss_dssp CCHHHHHHHHHHH----TTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHH----HcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHH----------HHHHHhhhHHHHH
Confidence 4557899999888 45444333 23455555555544545 5778899999 7779999999999
Q ss_pred HHHHHHHHH
Q psy4339 111 LLHQNALVL 119 (303)
Q Consensus 111 ~~~~~al~~ 119 (303)
.+++..+++
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999996
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.049 Score=46.74 Aligned_cols=111 Identities=14% Similarity=-0.047 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
....+...+| ..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.+
T Consensus 129 e~~~~~~~la----------~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 129 EQAQAWINLG----------EYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCSSCCHHHH----------HHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455667788 777999999999999999887542 2234567888889999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..+... +++..........-|.++. ..++|.+|-.+|..++....
T Consensus 194 a~~~~~~--~~d~~~~~~lk~~~gl~~l-~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 194 VNSMIEK--GGDWERRNRYKTYYGIHCL-AVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHTT--CCCTHHHHHHHHHHHHGGG-GTSCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhc--CCCHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHhccCC
Confidence 9877644 2333334455667788887 89999999999988875543
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.23 Score=38.04 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+=...+...+.+..+.+-+........+-..|..|.-++. ...|+.+.|...|+.|.++.....++.||......
T Consensus 96 EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE-----~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLa 170 (227)
T 2o8p_A 96 DIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLE-----FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFI 170 (227)
T ss_dssp HHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHH-----HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence 3444566677777666555442233444445544432221 23455889999999999999877788888877777
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQS-MQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~-~~~~~~A~~~~~~al~~~ 162 (303)
.|.+.+|.. +++.++|..+.++|.++.
T Consensus 171 LNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 171 QNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888887765 799999999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.17 Score=36.01 Aligned_cols=111 Identities=12% Similarity=-0.079 Sum_probs=73.8
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccH------HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHH
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRF------TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNE 99 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~ 99 (303)
..+++|+....+..+- ...|+. ++-.+.|++|+..............+..+... ..
T Consensus 8 ~~p~~yd~W~~yl~ll-------E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY-----------A~ 69 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKL-------EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF-----------AE 69 (161)
T ss_dssp --CCSHHHHHHHHHHH-------HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH-----------HH
T ss_pred eCCCCHHHHHHHHHHH-------HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH-----------HH
Confidence 3466776655554443 345777 77788888887763221001111122333333 33
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+...++.++|.+.|+.++.+ +...+.++...|.+-.++|+..+|.+.+.+|+.+.
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 35668999999999999996 12238889999999999999999999999999853
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.39 Score=41.33 Aligned_cols=103 Identities=12% Similarity=-0.033 Sum_probs=79.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch-HHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGE-NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY-EVGL 175 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 175 (303)
..|...|++.+|...+.....-. .+. +.......+.....+|...+++.+|...+.++....... ..+| ..+.
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~ 219 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLE 219 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHH
Confidence 77799999999999998876432 222 334567788889999999999999999999986543332 2333 3456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+...|.++. ..++|.+|-.+|.+++....
T Consensus 220 ~~~~~~~~~~-~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 220 YYNLLVKISL-HKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHhccc
Confidence 6778899998 89999999999999987544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.094 Score=36.49 Aligned_cols=69 Identities=12% Similarity=-0.065 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
...+.+++|+++....+. .+++.+++..+.. ++......++.+|..+. ++|+|++|..+.+..+++.|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCC
Confidence 346788999999886544 4677777665542 22356788999999995 999999999999999999883
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.34 Score=37.46 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++.+....+.||.......|.+.+|.. +++.++|..+.++|.+-
T Consensus 144 ~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 144 EAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34468899999999999877888999888888899988877 79999999988887754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.56 Score=40.36 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
.+.....|+..+ ...|++.+|.+.+.....- ..+. +.......+.... ..+...+++..|..
T Consensus 136 rarl~~~La~i~----e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~----------rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 136 RARVTKDLVEIK----KEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQM----------ELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHH----------HHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHH----HHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHH----------HHHHHCCCHHHHHH
Confidence 456677889777 6999999999999886532 2232 2333555555555 67789999999999
Q ss_pred HHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNV-QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+.++....... ..+| .....+...|.++...++|.+|-.+|.++......
T Consensus 199 ~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 199 LSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 999986543332 3344 34567788899999999999999999999876543
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.21 Score=39.10 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
-.+.|...|++|.++.....++.+|.......|.+.+|.. +++.++|..+.++|.+-
T Consensus 171 ~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3478899999999998887888999888888899988877 79999999988887654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.05 Score=46.69 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....+...+|..|...|++++|.+++.++.... .+ .......+..+..++. ..+++..+..++.++-....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~--~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~--- 199 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IS--TGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIE--- 199 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TC--CCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC--hHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhh---
Confidence 345567899999999999999999999987654 22 2345677888888887 89999999999999987665
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHH-HHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTE-FTNK 261 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~-~~~~ 261 (303)
...++. .......-|.++...++|.+|.. |++.
T Consensus 200 -------------------~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 200 -------------------KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp -------------------TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred -------------------cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 122222 22334445666677788888877 4444
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.24 Score=38.55 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++....+++.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 145 ~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 145 TVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33578899999999999887888999888888889888877 79999999988887654
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.41 Score=37.59 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|+.|.++.+..+.+.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 149 ~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 149 EAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33468899999999999877888999888888899988877 79999999888877643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.13 Score=36.35 Aligned_cols=72 Identities=13% Similarity=-0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....+.+++|+++....+. .+++.+++..+.. .+......++.+|..+. ++|+|++|..+.+..+++.|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCC
Confidence 3456788999999886654 4677777766542 22246678999999995 99999999999999999988
Q ss_pred hhh
Q psy4339 207 NLK 209 (303)
Q Consensus 207 ~~~ 209 (303)
++.
T Consensus 109 ~n~ 111 (144)
T 1y8m_A 109 NNK 111 (144)
T ss_dssp CCH
T ss_pred CcH
Confidence 433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.2 Score=45.92 Aligned_cols=124 Identities=11% Similarity=-0.093 Sum_probs=79.8
Q ss_pred hhh-HHHHHHHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc---CCC-------
Q psy4339 103 VQF-YKEAELLHQNALVLSLKHFGENNVQTAKHY--GNIGRLYQSMQKFDEAERMQLKAIAIKEKVL---GKD------- 169 (303)
Q Consensus 103 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~------- 169 (303)
.++ ++.|+..+++.... .|.....+ ..++.+.....+--+|+..+.++++-..... ...
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 57788888875553 23222111 1122222222344578888888775432111 111
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.|.....+..-+..+. ..|+++-|+.+.++|+...| ....+|..|+.+|..+
T Consensus 333 ~~~~~~LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aP---------------------------seF~tW~~La~vYi~l 384 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLL-NRGDYELALGVSNTSTELAL---------------------------DSFESWYNLARCHIKK 384 (754)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCS---------------------------SCHHHHHHHHHHHHHT
T ss_pred cCcchHHHHHHHHHHh-ccCcHHHHHHHHHHHHhcCc---------------------------hhhHHHHHHHHHHHHh
Confidence 1223345666788887 89999999999999999888 4556799999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|+++.|+-.+...
T Consensus 385 ~d~e~ALLtLNSc 397 (754)
T 4gns_B 385 EEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHS
T ss_pred ccHHHHHHHHhcC
Confidence 9999999755444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.4 Score=44.00 Aligned_cols=88 Identities=11% Similarity=-0.075 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHhh---CCCc-------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHF---GENN-------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~---~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+--+|+....++++...... ...+ +.....+.--+.++...|+++-|+++.++|+... |...
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhh
Confidence 44567888877775432211 1111 2223355566888999999999999999999875 6667
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~a 201 (303)
.+|..|+.+|. .+|+|+.|+-.++-+
T Consensus 372 ~tW~~La~vYi-~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 372 ESWYNLARCHI-KKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhccHHHHHHHHhcC
Confidence 88999999999 999999999887654
|
| >3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.68 Score=36.36 Aligned_cols=107 Identities=14% Similarity=-0.015 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh--CCCcHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPEN--HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF--GENNVQ 130 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~ 130 (303)
++=...+...+.+....+-+. ++.....+-..|..+.-++.....-.+..-.+.|...|++|.++.++.. .+.+|.
T Consensus 115 ~EL~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPi 194 (268)
T 3efz_A 115 ESILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPL 194 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 345556677777776654332 2222333444454443332111000222335788999999999998777 788998
Q ss_pred HHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 131 ~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
......|.+.+|+. +++.++|..+.++|.+-
T Consensus 195 RLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 195 YLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888899988875 79999999999988765
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.71 Score=36.20 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++. ..+.+.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 170 ~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 170 SSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568899999999999 77788899888888899988877 79999999998888754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.41 Score=33.73 Aligned_cols=71 Identities=7% Similarity=-0.112 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
....+.++.|+.+ .--....+..+++..++..+.. ++...-..++.||..+.++|+|++|..+.+.
T Consensus 37 vs~~t~F~YAw~L-------v~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 37 ATIQSRFNYAWGL-------IKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp SCHHHHHHHHHHH-------HHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3557777788655 2223445666788888776662 2224567889999999999999999999999
Q ss_pred HHHHH
Q psy4339 158 AIAIK 162 (303)
Q Consensus 158 al~~~ 162 (303)
.+++.
T Consensus 103 lL~~e 107 (144)
T 1y8m_A 103 LFEHE 107 (144)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98864
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.18 Score=43.96 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..||.+......++.|..+|.+|..+. |..+..++.||.+.. ..|+.-+|.-+|-+++....
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCC
Confidence 466789999999999999999999999875 778889999999998 89999999999999997654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.59 Score=32.48 Aligned_cols=70 Identities=7% Similarity=-0.108 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...+..+.|+.+ ..-....+..+++..++..+.. ++...-..++.||..+.++|+|++|..+.+..
T Consensus 39 s~qt~F~yAw~L-------v~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 39 TIQSRFNYAWGL-------IKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp CHHHHHHHHHHH-------HHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChhhHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456777778655 2223445666788888776652 23356788999999999999999999999999
Q ss_pred HHHH
Q psy4339 159 IAIK 162 (303)
Q Consensus 159 l~~~ 162 (303)
+++.
T Consensus 105 L~~e 108 (134)
T 3o48_A 105 FEHE 108 (134)
T ss_dssp HTTC
T ss_pred HhhC
Confidence 8753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.46 Score=45.02 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=70.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|++.|+.++|...|.+..+...+-. .| ...+|+.|-..|++.|++++|.++|++..+. +-.|++ .+|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G~~PDv-vTY 203 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------GLTPDL-LSY 203 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCCH-HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCcH-HHH
Confidence 788999999999999987655432211 22 2457999999999999999999999987642 233543 456
Q ss_pred HHHHHHHHHhhcC-HHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLE-YHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~-~~~A~~~~~~al~ 203 (303)
+.+-..+. +.|+ .++|..++++...
T Consensus 204 ntLI~glc-K~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 204 AAALQCMG-RQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHH
Confidence 77777776 7887 4788899888765
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.96 Score=34.62 Aligned_cols=94 Identities=7% Similarity=-0.088 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+...+.+..+.+-|........+-..|..|... |+.+.|...|+.|.++..+..++.||-......|.+..|..-
T Consensus 101 C~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEI 180 (227)
T 2o8p_A 101 LQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEK 180 (227)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Confidence 334444444433333322333444566666543 456899999999999998777788887666667777766326
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
+++.++|..+.++|+.+..
T Consensus 181 ln~p~~Ac~lAk~Afd~~~ 199 (227)
T 2o8p_A 181 YGEKKQVFNMLNSLGKILE 199 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 7999999999999988764
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.29 Score=42.63 Aligned_cols=63 Identities=8% Similarity=-0.193 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..||.+. +....++.|..+|.+|..+ .|..+..++.+| .+....|+.-+|+-+|.
T Consensus 153 r~l~~LGDL~----RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLa----------vla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 153 HCLVHLGDIA----RYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA----------ILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcccHH----HHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHH----------HHHhcccccHHHHHHHH
Confidence 4667788655 6788899999999999998 677889999999 44477888999999999
Q ss_pred HHHHH
Q psy4339 115 NALVL 119 (303)
Q Consensus 115 ~al~~ 119 (303)
+++..
T Consensus 211 rsl~~ 215 (497)
T 1ya0_A 211 RSIAV 215 (497)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 88763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.72 Score=42.61 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=34.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...|++++|.+..+. .++ ...+..+|..+...++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~----------~~~---~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD----------ESA---EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT----------CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh----------hCc---HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 567777777776422 122 246889999999999999999999886
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.42 E-value=1 Score=42.73 Aligned_cols=103 Identities=5% Similarity=-0.039 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.....+|+.+-..|++.|+.++|..+|.+..+...+-. .|+ ..+|+.+-..|. +.|+.++|.++|++.....-
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~-- 196 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGL-- 196 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC--
Confidence 34556899999999999999999999987655433321 233 357888888997 99999999999998764322
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH-HHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF-EKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~ 262 (303)
.|+. .+|..+-..+.+.|+. ++|.++++.+
T Consensus 197 -----------------------~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 197 -----------------------TPDL-LSYAAALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp -----------------------CCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -----------------------CCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 2333 4466677778888874 5676655444
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.1 Score=45.31 Aligned_cols=141 Identities=12% Similarity=0.007 Sum_probs=62.8
Q ss_pred hhcccHHHHHHHHHHHH--HHHHhhCCcc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH----------HHHH
Q psy4339 49 YSSGRFTESRRHAEKAI--QTFKNLLPEN--HLLLTSAHRVKALILEEIALDSNELISVQFYKEAE----------LLHQ 114 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al--~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~----------~~~~ 114 (303)
...+++++|..+-...+ +..... ... ++-.+.+|+..+ .++...|+..... ..+.
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~-nrrtlD~l~ak~~fY~s----------~~~e~~~~~~~~~~~~~~~~~ir~~Ll 215 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYY-NLRSLNLINAKLWFYIY----------LSHETLARSSEEINSDNQNIILRSTMM 215 (523)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHH-hHHhHHHHHHHHHHHHH----------HHHHHhcccccccccccchhhHHHHHH
Confidence 57889999988887665 222111 111 222344444444 3334445444322 1222
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.++... .+..|....+..++.+-..|...+.++.|..+..++.-. .. ...+...+.-++.+|.++. -+++|.+|
T Consensus 216 ~~~rta--~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a-~q~~Y~eA 289 (523)
T 4b4t_S 216 KFLKIA--SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINA-IQLDYSTA 289 (523)
T ss_dssp HHHHHC--CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHH--hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 222221 122344456677888899999999999999999887410 00 0123455777889999998 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
.+++..|+..+|
T Consensus 290 ~~~L~~A~rkap 301 (523)
T 4b4t_S 290 NEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHTSSCS
T ss_pred HHHHHHHHHhCC
Confidence 999999998776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.62 E-value=1.5 Score=32.17 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=36.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...|+++.|.+..+.. + ....|..||......|+++-|+.+|+++-
T Consensus 16 L~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----------N---DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 7789999998876542 1 23468899999999999999999998864
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.57 E-value=2.5 Score=34.33 Aligned_cols=130 Identities=10% Similarity=-0.031 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|+|=+|.+.++.....+.+. .+...-...+..-+..+.+.|++..|.++..-.++.+++..-+ + .......+.
T Consensus 25 ~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~--~-~~~~~~rl~ 99 (312)
T 2wpv_A 25 KAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK--V-DDISVARLV 99 (312)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--C-SHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--C-CHHHHHHHH
Confidence 3445555555544444333221 1223333444444555555566666665555555555543111 1 122334455
Q ss_pred HHHHHhhcCHH-HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 182 SLYNYHMLEYH-KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 182 ~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++. ....-+ +=..+.+++++... + .+......+..+..+|..|...|++.+|..
T Consensus 100 ~l~~-~~p~~~~~r~~fi~~ai~WS~-------------------~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 100 RLIA-ELDPSEPNLKDVITGMNNWSI-------------------K-FSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHT-TCCTTCTTHHHHHHHHHHHHH-------------------H-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH-HCCCCCchHHHHHHHHHHHHh-------------------h-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 5543 322111 12345555555544 1 111111223346667777777777777666
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=3 Score=35.04 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchh--hhHHH-HHHHHHH----HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHL--LLTSA-HRVKALI----LEEIALDSNELISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~-~~~la~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 122 (303)
..|+.+.|...+.+|+.++.-.+-.+.+ .+... ...+... ..... ..+...|++.+|+..+..++..
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~---~~~l~~g~~~~a~~~l~~~~~~--- 200 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKA---EAEIACGRASAVIAELEALTFE--- 200 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHh---
Confidence 4578899999999999886432212111 11111 1111111 11111 5668899999999999988775
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 123 HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 123 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
+|..-..+..+-.++...|+..+|+..|+++......-+|-++.
T Consensus 201 -----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 201 -----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp -----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45555578888999999999999999999998887766665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=1.5 Score=36.82 Aligned_cols=93 Identities=12% Similarity=-0.098 Sum_probs=65.7
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCC---Cch-----------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 142 YQSMQKFDEAERMQLKAIAIKEKVLGK---DDY-----------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 142 ~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~-----------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
....|+.+.|...+.+|+.+++.-+-. ..+ ....+...++..+. ..|++++|+..+.+++...|
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P- 202 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHP- 202 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST-
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC-
Confidence 334578888888888888776321101 001 12234556778887 89999999999999887766
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..-..+..+-.++...|+..+|++.++.+
T Consensus 203 --------------------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 203 --------------------------YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp --------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33345778888999999999999965554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.45 E-value=1.9 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=30.3
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
..|++++|.+..+. .+++ ..+..+| ..+...|+++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~~----------~~~~---~~W~~la----------~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTD----------ESAE---MKWRALG----------DASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTT----------CCCH---HHHHHHH----------HHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh----------hCcH---hHHHHHH----------HHHHHcCCHHHHHHHHHHc
Confidence 57888888877532 1223 4555666 5558888888888888875
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=92.39 E-value=3 Score=32.17 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=52.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFK 69 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~ 69 (303)
++-+.+++...|+.|.++.+..+++.||-......+.+.-|| ...++.++|....++|.+-.-
T Consensus 145 r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyy---Eiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 145 KKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHY---EIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH---HTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH
Confidence 455788999999999999998899999988878888886666 688999999999888876543
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=3.4 Score=32.14 Aligned_cols=74 Identities=11% Similarity=-0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 133 ~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
..+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-+++.++|..+.++|+
T Consensus 122 FY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334456666655422 3678999999999998888899998888788888777424799999999998887
Q ss_pred Hhhh
Q psy4339 203 EIND 206 (303)
Q Consensus 203 ~~~~ 206 (303)
.-.-
T Consensus 202 d~Ai 205 (248)
T 3uzd_A 202 DDAI 205 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.89 E-value=2.8 Score=30.63 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=65.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--HH--------HHhcCCC
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA--IK--------EKVLGKD 169 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~--------~~~~~~~ 169 (303)
..-.|+|..|+-.+.+ .....+..--+.||...++|.+|+.++++.++ +. -+.+--+
T Consensus 43 LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 43 LYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 3667888877766532 12344556678899999999999999999872 11 1111112
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+.-..+..+|.++. ..|+.+||+.++.....+.+
T Consensus 110 ~~DkEfFy~l~a~llt-q~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 110 PGDEEFFESLLGDLCT-LSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp TTCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHH-HhcCHHHhhhHhhhhcCCcc
Confidence 2233345678899998 99999999999999887665
|
| >3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=1.4 Score=34.65 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=52.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLF--GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
++.+.+++...|+.|.++.+..+ ++.||-......|.+.-|| ...++.++|....++|.+-
T Consensus 164 rk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyY---EIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 164 KNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKY---DLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999998888 8899988778888886666 6899999999999998876
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.20 E-value=4.2 Score=29.71 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=60.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH--HH------
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL--SL------ 121 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~------ 121 (303)
..|.|..|+-++.. ...+.+.+--+ -+|...++|..|+..+++.++- -+
T Consensus 45 yngEY~R~Lf~L~~-------------lNT~Ts~YYk~----------LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 45 LNGEYTRALFHLHK-------------LNTCTSKYYES----------LCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp HTTCHHHHHHHHHT-------------CCBHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred hcchHhHHHHHHHh-------------cchHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 67888777655532 23445555556 5568999999999999998832 10
Q ss_pred --HhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 122 --KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 122 --~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+..--++.+.--.+..+|.++...|+.+||+.++......
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0000112233446788999999999999999999887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.92 E-value=7.6 Score=37.80 Aligned_cols=102 Identities=13% Similarity=-0.020 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC---------------CcchhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL---------------PENHLLLTSAHRVKALILEEIALDSNELI 101 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~~~~ 101 (303)
.+-+|.++ ...|++++|..+|++|-....... .........-|..+. ..+.
T Consensus 845 ~yl~g~~~----L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~----------~LFe 910 (1139)
T 4fhn_B 845 VYLKALIY----LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS----------KKLF 910 (1139)
T ss_dssp HHHHHHHH----HHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH----------HHHH
T ss_pred HHHHHHHH----HhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH----------HHHH
Confidence 47788777 699999999999988742211000 000001222334444 5557
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
..|.++.+++..+.|++.. +++++. ....+.++=..+...|+|++|...+.
T Consensus 911 ~~~~~~~vi~fa~lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 7788888888888888752 233333 33467777788888899988877664
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.76 Score=40.03 Aligned_cols=137 Identities=10% Similarity=0.010 Sum_probs=55.8
Q ss_pred HhhhhHHHHHHHHHHHHH--HHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH-------HHHHHHHHh-cCCC
Q psy4339 101 ISVQFYKEAELLHQNALV--LSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL-------KAIAIKEKV-LGKD 169 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~--~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------~al~~~~~~-~~~~ 169 (303)
...+++++|..+-...+. ..... ...-++..+.+|+..+.++...|+..+...... ..+...+.. ...+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 667889998888776652 22111 001133455667777777777777665432211 122222222 2344
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
....+..++.+-+.|. ..+.++.|..+..++. .| .. .......+.-++.+|.++.-+
T Consensus 227 ~~~qa~l~nllLRnYL-~~~~y~qA~~lvsk~~--fP-------------------~~-~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 227 NETKAMLINLILRDFL-NNGEVDSASDFISKLE--YP-------------------HT-DVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp SCHHHHHHHHHHHHHH-HSSCSTTHHHHHHHHC--SC-------------------TT-TSCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHH-ccCcHHHHHHHHhcCc--CC-------------------cc-cCCHHHHHHHHHHHHHHHHHh
Confidence 4556777888999998 9999999999999874 33 11 112234566678899999999
Q ss_pred hcHHHHHHHHH
Q psy4339 250 ENFEKMTEFTN 260 (303)
Q Consensus 250 g~~~~A~~~~~ 260 (303)
++|.+|.+++.
T Consensus 284 ~~Y~eA~~~L~ 294 (523)
T 4b4t_S 284 LDYSTANEYII 294 (523)
T ss_dssp TCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 99999998543
|
| >3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis} | Back alignment and structure |
|---|
Probab=89.52 E-value=7.8 Score=31.88 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++..|.+|+...+..++..| ...|.-+|.++++.+++.+|+..+-+|-...+.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 78999999999888765444 234677899999999999999999998777644
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=88.78 E-value=6.8 Score=30.20 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-.++.++|..+.++|+.
T Consensus 125 Y~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 125 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456776655422 46789999999999988888999988887788887774256999999999888876
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 205 ~Ai 207 (236)
T 3iqu_A 205 EAM 207 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.37 E-value=10 Score=31.82 Aligned_cols=103 Identities=6% Similarity=-0.107 Sum_probs=71.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCC---------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGE---------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
....+.++|.+.+.+......+.... .......+...++..|...|+.++|..+++++-.......+.+..
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 55678889998888765433222111 112344566788999999999999999999998887775444444
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..+..+...+..+. ..+++..+....-..+..
T Consensus 167 v~~~~y~~~~~~~~-~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 167 ITNSFYSTNSQYFK-FKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhh
Confidence 45566666777777 888988877666666543
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=7.9 Score=30.36 Aligned_cols=73 Identities=10% Similarity=-0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .+.|...|++|.++.....++.||.......|.+..|..-+++.++|..+.++|+.
T Consensus 127 Y~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 127 YLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455666655433 35789999999999988788999988877888888774247999999999998886
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 207 ~Ai 209 (260)
T 1o9d_A 207 EAI 209 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=88.26 E-value=7.4 Score=30.00 Aligned_cols=73 Identities=11% Similarity=-0.073 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .++|...|++|.++.+...++.||.......|.+..|..-.++.++|..+.++|+.
T Consensus 122 y~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 122 YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666654332 35789999999999988888999988877788887774247999999999998887
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 202 ~Ai 204 (234)
T 2br9_A 202 DAI 204 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.24 E-value=7.9 Score=30.29 Aligned_cols=72 Identities=11% Similarity=-0.064 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-+++.++|..+.++|+.-
T Consensus 149 ~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 149 YKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3356666655422 367899999999999888889999888888888887742479999999999888765
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.-
T Consensus 229 Ai 230 (261)
T 3ubw_A 229 AI 230 (261)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=87.12 E-value=9.4 Score=29.92 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+-..|..|...-. .++|...|++|.++. ...++.||-......|.+..|..-+++.++|..+.++|+.-
T Consensus 149 ~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 149 FKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666654432 357899999999999 77888899887777888887742479999999999998875
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.-
T Consensus 228 Ai 229 (260)
T 2npm_A 228 AI 229 (260)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=13 Score=31.32 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++..|.+|+...+..++..| ...|.-+|.++++.+++.+|+..+-+|-...+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 58899999999887765444 335677899999999999999999998777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.03 E-value=14 Score=29.93 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=53.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD-EAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
.+.|++..|.+...-.++.+.+...+ ........+..++.....-+ .=.++.++++.-..+. |.........+..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~---~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ 139 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVK---VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNT 139 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCC---CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHH
Confidence 45556666666555555555543111 11223344444443322111 2255667777765554 2222233456889
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q psy4339 180 LASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~ 199 (303)
+|..|. ..|++.+|..+|-
T Consensus 140 ~a~~~~-~e~~~~~A~~H~i 158 (312)
T 2wpv_A 140 IGSKLL-EGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHh-hcCCHHHHHHHHH
Confidence 999997 9999999999884
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.03 E-value=5.6 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=37.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
...|+++.|.+..++. + ....|..||..-. ..|+++-|+.+|.++-...
T Consensus 16 L~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----------N---DSITWERLIQEAL-AQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHH-HTTCHHHHHHHHHHTTCHH
T ss_pred HhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHH-HcCChHHHHHHHHHhCCHH
Confidence 5678888888876542 1 2346889999998 9999999999998865443
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=82.94 E-value=4.3 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
..+..+...|..+...|+|++|+++.++|.......
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999998765543
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=80.06 E-value=5.6 Score=25.43 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+..+...+..+. ..|+|++||++.+++.....
T Consensus 13 n~AH~~~RrAe~ll-~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 13 NLAHQQSRRADRLL-AAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHH-hcCCHHHHHHHHHHHHHHHH
Confidence 34556677889998 99999999999999987665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.75 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.57 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.57 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.38 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.76 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 96.19 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 95.91 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 95.87 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 95.28 | |
| d3efza1 | 223 | 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [ | 94.85 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 94.65 | |
| d3efza1 | 223 | 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [ | 92.55 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 91.27 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 89.61 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 82.2 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 80.47 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.6e-19 Score=148.61 Aligned_cols=191 Identities=14% Similarity=0.053 Sum_probs=129.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+..|+++++. +|..+.++..+|.++ ...|++++|+.+|.+++++ +|.....+.
T Consensus 32 ~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~ 91 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQ----AENEQELLAISALRRCLEL--------KPDNQTALM 91 (323)
T ss_dssp TTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCChHHHHHHHHhhhcc--------ccccccccc
Confidence 34566666777766654 566778999999877 5999999999999999987 455567788
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh-----------------------------------------
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKH----------------------------------------- 123 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------- 123 (303)
.+| .+|...|++++|++.+++++......
T Consensus 92 ~la----------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 92 ALA----------VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccc----------ccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 888 55678888888888888776542211
Q ss_pred ---hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 124 ---FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 124 ---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
..++. ....++..+|.++..+|++++|+.++++++... |....++..+|.++. .+|++++|+.+|++
T Consensus 162 al~~~p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 162 AVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGATLA-NGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHhhcc-cccccchhhHHHHHHHHHHhhhhcccccccccc--------cccccchhhhhhccc-ccccchhHHHHHHH
Confidence 00000 112344556666666666666666666665432 333445556666664 66666666666666
Q ss_pred HHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 201 SIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 201 al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++++.| ....++.++|.+|...|++++|++ +.+++
T Consensus 232 al~~~p---------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 232 ALELQP---------------------------GYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHCT---------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhh---------------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 665544 556789999999999999999999 44555
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.5e-18 Score=140.94 Aligned_cols=210 Identities=12% Similarity=-0.081 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHH-------HHHhCCCc---HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 11 LSLCSQLALKLK-------QVLFGSEN---LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 11 a~~~~~~al~~~-------~~~~~~~~---~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
+.+++.+|.+.. ..+.+.+. +..+..+...|++| ...|+|++|+.+|.+|+++.... .+.+..+
T Consensus 4 ~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y----~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a 77 (290)
T d1qqea_ 4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIY----RLRKELNLAGDSFLKAADYQKKA--GNEDEAG 77 (290)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHH----HHTTCTHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHH----HHCcCHHHHHHHHHHHHHHHHHc--CCCHHHH
Confidence 344555544443 33344444 34578899999877 69999999999999999998875 4566688
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAI 159 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 159 (303)
.++.++| .+|...|++++|+.++++++.+.... ++......++.++|.+|.. .|++++|+.++++|+
T Consensus 78 ~~~~~~g----------~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~ 145 (290)
T d1qqea_ 78 NTYVEAY----------KCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (290)
T ss_dssp HHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 9999999 77799999999999999999998875 4556667889999999865 699999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDY 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 239 (303)
++.... .+.+....++.++|.++. .+|+|++|+.+|++++...+ . ...........+
T Consensus 146 ~l~~~~--~~~~~~~~~~~~la~~~~-~~g~y~~A~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~ 202 (290)
T d1qqea_ 146 EWYAQD--QSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSM-------------------G-NRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTS-------------------S-CTTTGGGHHHHH
T ss_pred HHHHhc--CchhhhhhHHHHHHHHHH-HcChHHHHHHHHHHHHHhCc-------------------c-chhhhhhHHHHH
Confidence 998764 455667888999999997 99999999999999998877 2 111223445567
Q ss_pred HhHHHHHHhhhcHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~ 261 (303)
...+.++...|++..|...++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~ 224 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQE 224 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 7888888888888888874433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.7e-18 Score=143.68 Aligned_cols=193 Identities=16% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+.++..+|..+ ...|++++|...++++++. +|....++..+| .++...|++++|+
T Consensus 166 ~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~----------~~~~~~~~~~~A~ 223 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVF----NAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLG----------NVLKEARIFDRAV 223 (388)
T ss_dssp TTCHHHHHHHHHHH----HTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHTTTCTTHHH
T ss_pred cchhHHHHhhcccc----cccCcHHHHHHHHHHHHHh--------CcccHHHHHHHh----------hhhhccccHHHHH
Confidence 33445556666544 4666666666666666654 344445555666 4446666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..++++... .+.....+..+|.++...|++++|+.+|++++++. |....++.++|.++. ..|+
T Consensus 224 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~-~~~~ 286 (388)
T d1w3ba_ 224 AAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALK-EKGS 286 (388)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHH-HHSC
T ss_pred HHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCC
Confidence 666666553 12233445566666666666666666666666542 333445566666665 6666
Q ss_pred HHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++|+..+++++...+..+ ..+..+...+.+.+|+..+ -..+|....++.++|.++...|++++|+++++.+
T Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666555433 2333334444444444222 1234567788999999999999999999955443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.7e-17 Score=130.78 Aligned_cols=195 Identities=13% Similarity=-0.103 Sum_probs=140.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.++..+.+++.+|.+| ...|++++|+..|++++++ +|..+.+++++| .+|...|++++
T Consensus 32 ~~~~~a~~~~~~G~~y----~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg----------~~~~~~g~~~~ 89 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLY----DSLGLRALARNDFSQALAI--------RPDMPEVFNYLG----------IYLTQAGNFDA 89 (259)
T ss_dssp CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhc----------hHHHHHHHHHH
Confidence 4677899999999877 6999999999999999998 556678899999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..|++++++ +|....++.++|.++..+|++++|+..+++++++. |........++..+. ..
T Consensus 90 A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~-~~ 152 (259)
T d1xnfa_ 90 AYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYLAEQ-KL 152 (259)
T ss_dssp HHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HH
T ss_pred hhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHH-Hh
Confidence 99999999996 34455688999999999999999999999999863 222334455666665 66
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhh------hhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGL------EYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l------~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+..+.+...........+..+........+ +....+..... ...|....+++.+|.+|...|++++|+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (259)
T d1xnfa_ 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 232 (259)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 665555555444444333222222221111 11222222111 223456678899999999999999999966
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 233 ~~a 235 (259)
T d1xnfa_ 233 KLA 235 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.3e-18 Score=141.90 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=161.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|...+++++++ +|....++..+|.++ ...|++++|+..++++... .+.....+.
T Consensus 182 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 241 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVL----KEARIFDRAVAAYLRALSL--------SPNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HTTTCTTHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhh----hccccHHHHHHHHHHhHHH--------hhhHHHHHH
Confidence 45678899999999876 455667889999877 6999999999999998876 344567778
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+| .++...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++...
T Consensus 242 ~l~----------~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 301 (388)
T d1w3ba_ 242 NLA----------CVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-- 301 (388)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--
T ss_pred HHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--
Confidence 888 6668999999999999999985 34456678899999999999999999999987653
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhhc---cccccHHH
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLFS---ASYSGLEY 237 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~~---~~~~~~~~ 237 (303)
|.....+..+|.++. ..|++++|+.++++++++.|+++ .++.++..++.+.+|+..+. .-+|....
T Consensus 302 ------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 374 (388)
T d1w3ba_ 302 ------PTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp ------TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred ------CccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 445567889999997 99999999999999999888654 34556666666666653332 34677788
Q ss_pred HHHhHHHHHHhhhc
Q psy4339 238 DYRGLIHVYECLEN 251 (303)
Q Consensus 238 ~~~~la~~~~~~g~ 251 (303)
++.++|.+|..+||
T Consensus 375 a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC
Confidence 89999999999886
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.9e-16 Score=128.25 Aligned_cols=179 Identities=12% Similarity=-0.069 Sum_probs=146.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|.+.|.+|++++.+. .+++..+.++.++|.+| ..+|++++|+.+|++++++.... +.......++.+
T Consensus 51 ~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y----~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~ 122 (290)
T d1qqea_ 51 KELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCF----KSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFE 122 (290)
T ss_dssp TCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH----HHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHH
Confidence 34678889999999998874 45678899999999877 69999999999999999998875 344456777888
Q ss_pred HHHHHHHHhhhhHHHHh-hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELIS-VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+| .+|.. .|++++|+.+|++++++.... .+++....++.++|.++..+|+|++|+.+|++++.....
T Consensus 123 l~----------~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 123 LG----------EILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HH----------HHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HH----------HhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 88 55544 699999999999999998764 455667889999999999999999999999999886533
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. +.........+.+.|.++. ..|+++.|...+++++++.|
T Consensus 191 ~-~~~~~~~~~~~~~~~~~~l-~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 191 N-RLSQWSLKDYFLKKGLCQL-AATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp C-TTTGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHGGGCC--
T ss_pred c-hhhhhhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Confidence 2 1223445566788999997 99999999999999998877
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=9.5e-16 Score=126.55 Aligned_cols=242 Identities=12% Similarity=-0.039 Sum_probs=180.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+.+++++++... ..+.+..+.++..+|.++ ...|++++|+..|++++++.... ++.+....++.
T Consensus 25 ~g~~~~A~~~~~~aL~~~~---~~~~~~~~~a~~~lg~~~----~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~ 95 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVL----HCKGELTRSLALMQQTEQMARQH--DVWHYALWSLI 95 (366)
T ss_dssp TTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCc---CCCcHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHH
Confidence 4557788888888876521 123345567899999877 59999999999999999998764 45566778888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+++ ..+...|++..|...+.+++.+......+..+....++..+|.++...|++++|..++.+++.....
T Consensus 96 ~~~----------~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 96 QQS----------EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 888 6679999999999999999999887766666777778889999999999999999988887665321
Q ss_pred h--------------------------------------cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 V--------------------------------------LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~--------------------------------------~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. .+...+....++..+|.++. ..|++++|..++++++.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~ 244 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-MTGDKAAAANWLRHTAKPEF 244 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHSCCCCC
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhcc
Confidence 1 12223444556777888887 99999999999999998776
Q ss_pred hhh-h-------hhhhhhhhhhhHHHHhhh---------ccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHH
Q psy4339 207 NLK-L-------FSASYSGLEYHYRDLKLF---------SASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWK 266 (303)
Q Consensus 207 ~~~-~-------~~~~~~~l~~~~~a~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~ 266 (303)
.++ . ++.++..++.+.+|...+ ....|....++..+|.+|..+|++++|.+ +.+++....
T Consensus 245 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 432 1 233444444444443211 23456678889999999999999999999 556665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.9e-16 Score=129.74 Aligned_cols=193 Identities=9% Similarity=-0.030 Sum_probs=152.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKE 108 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~ 108 (303)
+|+...++..+|.++ ...+.+++|+..+.+++++ +|....++++.| .++...| ++++
T Consensus 39 ~p~~~~a~~~~~~~~----~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~----------~~l~~l~~~~~e 96 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVL----QRDERSERAFKLTRDAIEL--------NAANYTVWHFRR----------VLLKSLQKDLHE 96 (315)
T ss_dssp CHHHHHHHHHHHHHH----HHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHH--------CCCChHHHHHHH----------HHHHHhCcCHHH
Confidence 578899999999766 6899999999999999998 677789999999 5557766 5999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.++.+++++ +|....++.++|.++..+|++++|+.++.+++++. |....++.++|.++. ..
T Consensus 97 al~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--------p~n~~a~~~~~~~~~-~~ 159 (315)
T d2h6fa1 97 EMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQ-EF 159 (315)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--------hcchHHHHHHHHHHH-HH
Confidence 99999999996 56678899999999999999999999999999874 556788999999997 99
Q ss_pred cCHHHHHHHHHHHHHhhhhhhh----hhhhhhhh------hhhHHHHhh---hccccccHHHHHHhHHHHHHhhhcHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKL----FSASYSGL------EYHYRDLKL---FSASYSGLEYDYRGLIHVYECLENFEKM 255 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l------~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (303)
|++++|+.++++++++.|++.. .+.++..+ +.+.+|+.. .-...|....++..++.++...| ..++
T Consensus 160 ~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~ 238 (315)
T d2h6fa1 160 KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKY 238 (315)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGC
T ss_pred HhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHH
Confidence 9999999999999999885432 12222222 223344422 23347788888999998866554 5777
Q ss_pred HHHHHHH
Q psy4339 256 TEFTNKL 262 (303)
Q Consensus 256 ~~~~~~~ 262 (303)
.+..+.+
T Consensus 239 ~~~~~~~ 245 (315)
T d2h6fa1 239 PNLLNQL 245 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7754433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.2e-16 Score=126.12 Aligned_cols=198 Identities=10% Similarity=-0.059 Sum_probs=144.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC-----------
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP----------- 73 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~----------- 73 (303)
..-++.|...|.+++++ +|.....+..+|.++ ...|++++|+..+++++........
T Consensus 66 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (323)
T d1fcha_ 66 NEQELLAISALRRCLEL--------KPDNQTALMALAVSF----TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133 (323)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred cCChHHHHHHHHhhhcc--------ccccccccccccccc----cccccccccccchhhHHHhccchHHHHHhhhhhhhh
Confidence 34567788888888776 455567899999777 6999999999999998764221100
Q ss_pred ------------------------------cchh--hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q psy4339 74 ------------------------------ENHL--LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSL 121 (303)
Q Consensus 74 ------------------------------~~~~--~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 121 (303)
..+| ..+.++..+| .++...|++++|+.++++++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~~al~~-- 201 (323)
T d1fcha_ 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG----------VLFNLSGEYDKAVDCFTAALSV-- 201 (323)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH----------HHHHHHHHHhhhhccccccccc--
Confidence 0000 0123334444 6678999999999999999985
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy4339 122 KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 122 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~a 201 (303)
.|....++.++|.++..+|++++|+.+|++++++. |....++.++|.+|. .+|++++|+..|++|
T Consensus 202 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 202 ------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCI-NLGAHREAVEHFLEA 266 (323)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred ------ccccccchhhhhhcccccccchhHHHHHHHHHHHh--------hccHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 34456789999999999999999999999999863 445678999999997 999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 202 IEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 202 l~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++.|+++.. ..........++..++.++...|+.+.+..
T Consensus 267 l~l~p~~~~~----------------~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 267 LNMQRKSRGP----------------RGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHTC----------------------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHhCCcChhh----------------hhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998832211 011112233456678888888887776655
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.9e-16 Score=128.56 Aligned_cols=213 Identities=9% Similarity=-0.010 Sum_probs=157.8
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
.++.|+.++++|+++ +|....+++++|.++ ...| ++++|+.++.+++++ +|....++.+
T Consensus 58 ~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l----~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~ 117 (315)
T d2h6fa1 58 RSERAFKLTRDAIEL--------NAANYTVWHFRRVLL----KSLQKDLHEEMNYITAIIEE--------QPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred chHHHHHHHHHHHHH--------CCCChHHHHHHHHHH----HHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHH
Confidence 345666666666666 677888999999887 4655 699999999999988 6777899999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+..+.+++++ +|....++.++|.++...|++++|+.++++++++.
T Consensus 118 ~~----------~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--- 176 (315)
T d2h6fa1 118 RR----------VLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--- 176 (315)
T ss_dssp HH----------HHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---
T ss_pred Hh----------HHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---
Confidence 99 6668999999999999999996 45667889999999999999999999999999873
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHhhhhhhhh----hhhhhhh--hhhH----HHHhhhc
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLE------YHKAEKLYFRSIEINDNLKLF----SASYSGL--EYHY----RDLKLFS 229 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~----~~~~~~l--~~~~----~a~~~~~ 229 (303)
|....+++++|.++. ..|+ +++|+..+.+++.+.|+++.. +..+... .... ++++. .
T Consensus 177 -----p~n~~a~~~r~~~l~-~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l-~ 249 (315)
T d2h6fa1 177 -----VRNNSVWNQRYFVIS-NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 249 (315)
T ss_dssp -----TTCHHHHHHHHHHHH-HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred -----CccHHHHHHHHHHHH-HccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHh-C
Confidence 556678999999986 7765 689999999999998865532 1122111 1111 12222 1
Q ss_pred cccccHHHHHHhHHHHHHhh--hcHHHHHH-HHHHHHHHHHH
Q psy4339 230 ASYSGLEYDYRGLIHVYECL--ENFEKMTE-FTNKLSEWKIL 268 (303)
Q Consensus 230 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~-~~~~~~~~~~~ 268 (303)
+ .+....++..++.+|... ++.+.+.. +.+++.....+
T Consensus 250 ~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l 290 (315)
T d2h6fa1 250 P-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 290 (315)
T ss_dssp T-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred C-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 1 123445567778887654 66677877 55555444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4.3e-13 Score=110.25 Aligned_cols=185 Identities=14% Similarity=-0.046 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..++.....|.++ ...|++++|+.+++++++.... .+.+....++..+| .++...|++++|+.
T Consensus 10 ~~ae~~~lrA~~~----~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg----------~~~~~~g~~~~A~~ 72 (366)
T d1hz4a_ 10 MHAEFNALRAQVA----INDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLG----------EVLHCKGELTRSLA 72 (366)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHH----------HHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHH----------HHHHHCCCHHHHHH
Confidence 3456666678766 5999999999999999886322 23344567888899 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+++++++.... ++.+....++.+++.++...|++.+|...+.+++.+.....+...+..+.+...+|.++. ..|++
T Consensus 73 ~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~ 149 (366)
T d1hz4a_ 73 LMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARL 149 (366)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH-Hhcch
Confidence 999999988764 556777888999999999999999999999999999988777777788888999999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
+.|...+.+++...+ . ...+....++..++..+...|++.++...
T Consensus 150 ~~a~~~~~~~~~~~~-------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 194 (366)
T d1hz4a_ 150 DEAEASARSGIEVLS-------------------S---YQPQQQLQCLAMLIQCSLARGDLDNARSQ 194 (366)
T ss_dssp HHHHHHHHHHHHHTT-------------------T---SCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHHHhh-------------------h---hhhhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999998877 1 12223445566667777777777777663
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4e-14 Score=107.05 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
.+.+.|..+ ...|+|++|++.|.++ .+.+ +.+++++| .+|..+|++++|+..|++
T Consensus 7 ~l~~~g~~~----~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG----------~~~~~~g~~~~A~~~~~k 61 (192)
T d1hh8a_ 7 SLWNEGVLA----ADKKDWKGALDAFSAV--------QDPH---SRICFNIG----------CMYTILKNMTEAEKAFTR 61 (192)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHTS--------SSCC---HHHHHHHH----------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH----HHCCCHHHHHHHHHhc--------CCCC---HHHHHHHH----------HHHHHcCCchhHHHHHHH
Confidence 344568666 5999999999988652 1222 35788999 777999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-------cC-CCchHHHHHHHHHHHHHHHh
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV-------LG-KDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~ 187 (303)
|+++ +|..+.++.++|.++..+|++++|+..|++|+...+.. .| ........+++++|.++. .
T Consensus 62 Al~l--------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~-~ 132 (192)
T d1hh8a_ 62 SINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-K 132 (192)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-H
T ss_pred HHHH--------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH-H
Confidence 9996 45667899999999999999999999999999754221 00 111234578899999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
+|++++|++.+.+++.+.+
T Consensus 133 ~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 133 KEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp TTCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 9999999999999998876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=5e-14 Score=111.50 Aligned_cols=129 Identities=9% Similarity=-0.080 Sum_probs=107.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
...+.+.|+..+.+++.. ....++..+.+++++| .+|...|++++|+..|++++.+ +|
T Consensus 11 ~~~~~e~al~~~~e~l~~----~~~~~~~~a~~~~~~G----------~~y~~~g~~~~A~~~~~~al~l--------~p 68 (259)
T d1xnfa_ 11 PTLQQEVILARMEQILAS----RALTDDERAQLLYERG----------VLYDSLGLRALARNDFSQALAI--------RP 68 (259)
T ss_dssp CCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CC
T ss_pred ccHHHHHHHHHHHHHHHh----hhcCCHHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHhhcc--------CC
Confidence 455667777777776543 1234566888999999 7779999999999999999997 34
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....++.++|.+|..+|++++|+.+|++++++. |....++.++|.++. .+|++++|+..+++++++.|+++
T Consensus 69 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 139 (259)
T d1xnfa_ 69 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPNDP 139 (259)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--------hhhhhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhccccH
Confidence 556789999999999999999999999999874 445568999999997 99999999999999999988544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.57 E-value=2.5e-13 Score=99.08 Aligned_cols=108 Identities=16% Similarity=0.027 Sum_probs=91.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC---c
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGE----NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD---D 170 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~ 170 (303)
..+...|+|++|+..|++++++.+..... ..+..+.++.++|.+|..+|++++|+..+++++.+..+..... .
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 56688999999999999999998764221 1234567899999999999999999999999999987753322 3
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+....+++++|.+|. .+|++++|+..|++++++.+
T Consensus 97 ~~~~~a~~~~g~~~~-~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 97 KLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHhhH
Confidence 456678999999997 99999999999999999988
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.5e-14 Score=97.83 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=84.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..|.++++. .|....++.++|.+|..+|++++|+..+.+++.+. |....++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~ 74 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------PDWGKGY 74 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHhc--------cchhhHH
Confidence 7779999999999999999986 45567789999999999999999999999999874 5556789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.++|.++. .+|++++|+..|++++++.|+
T Consensus 75 ~~~g~~~~-~~~~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 75 SRKAAALE-FLNRFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHhCCC
Confidence 99999998 999999999999999998883
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.2e-13 Score=99.92 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN-------NVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.+..+...| ..++..|+|++|+..|++++.+.....+.. .+....++.++|.||..+|++++|
T Consensus 12 ~a~~l~~~G----------~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A 81 (170)
T d1p5qa1 12 QSTIVKERG----------TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 81 (170)
T ss_dssp HHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence 455666777 777999999999999999999865432222 123456788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
+.++++++.+. |....++..+|.+|. .+|++++|+..|++++++.|
T Consensus 82 ~~~~~~al~~~--------p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P------------------------- 127 (170)
T d1p5qa1 82 IESCNKALELD--------SNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYP------------------------- 127 (170)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCS-------------------------
T ss_pred cchhhhhhhcc--------ccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCC-------------------------
Confidence 99999999873 556778999999997 99999999999999999887
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....+...++.+....++..+...
T Consensus 128 --~n~~~~~~l~~~~~~~~~~~~~e~ 151 (170)
T d1p5qa1 128 --NNKAAKTQLAVCQQRIRRQLAREK 151 (170)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888777776666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.54 E-value=4e-13 Score=97.94 Aligned_cols=139 Identities=15% Similarity=0.038 Sum_probs=106.2
Q ss_pred HHHHHHHHH--HHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc----chhhhHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 32 QVAIAEDEL--AYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE----NHLLLTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 32 ~~~~~~~~l--a~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
+++.++..+ |+.+ +..|+|++|+..|++++++....... ..+..+.++.++| .+|..+|+
T Consensus 5 ~~a~a~~~l~~g~~~----~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg----------~~~~~lg~ 70 (156)
T d2hr2a1 5 EVVGAYLALSDAQRQ----LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA----------EALAGLRS 70 (156)
T ss_dssp HHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHH----------HHHHHTTC
T ss_pred HHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHH----------HHHHHcCc
Confidence 456666666 6566 48899999999999999998765321 1233567888899 77799999
Q ss_pred HHHHHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGE---NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
+++|+..+++++.+..+.... ..+....+++++|.+|..+|++++|+.+|++|+++..+..+ ..+........++.
T Consensus 71 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~ 149 (156)
T d2hr2a1 71 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAID 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHH
T ss_pred cchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHH
Confidence 999999999999998765322 23456678999999999999999999999999999887644 33444445555555
Q ss_pred HHH
Q psy4339 183 LYN 185 (303)
Q Consensus 183 ~~~ 185 (303)
.+.
T Consensus 150 ~l~ 152 (156)
T d2hr2a1 150 RIA 152 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=9.7e-14 Score=104.90 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=101.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|+|++|++.|.++ .+.+ ..+++++|.+|..+|++++|+.+|++|+++. |..+.++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------p~~~~a~ 73 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAY 73 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--------hhhhhhH
Confidence 6668999999999988652 1222 3578899999999999999999999999874 6667899
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc-ccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA-SYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
.++|.++. .+|++++|+..|++++...+.++.+.. . ..+. .......+++++|.++...|++++|.
T Consensus 74 ~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~--~----------~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~ 140 (192)
T d1hh8a_ 74 FQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDY--K----------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 140 (192)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEEC--G----------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHH--H----------HhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997 999999999999999987663221110 0 0111 12234677899999999999999999
Q ss_pred HHHH
Q psy4339 257 EFTN 260 (303)
Q Consensus 257 ~~~~ 260 (303)
+.++
T Consensus 141 ~~l~ 144 (192)
T d1hh8a_ 141 EQLA 144 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.5e-13 Score=98.63 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+...|+.+ +..|+|++|+.+|++++++ +|....++.++| .++...|++++|+.
T Consensus 8 ~~a~~l~~~gn~~----~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~~~~~~A~~ 65 (159)
T d1a17a_ 8 KRAEELKTQANDY----FKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRS----------LAYLRTECYGYALG 65 (159)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----HHcCCHHHHHHHhhhcccc--------chhhhhhhhhhH----------HHHHhccccchHHH
Confidence 4556777889888 4999999999999999987 567778899999 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HhhcC
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN-YHMLE 190 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~g~ 190 (303)
.|++++++ .|....++.++|.++..+|++++|+.++++++.+. ++++ .++..++.+.. ...+.
T Consensus 66 ~~~kal~~--------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-----p~~~---~~~~~l~~~~~~~~~~~ 129 (159)
T d1a17a_ 66 DATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK---DAKMKYQECNKIVKQKA 129 (159)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH---HHHHHHHHHHHHHHHHH
Confidence 99999997 45567789999999999999999999999999874 3333 33444444432 03455
Q ss_pred HHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRS 201 (303)
Q Consensus 191 ~~~A~~~~~~a 201 (303)
+++|+......
T Consensus 130 ~~~a~~~~~~~ 140 (159)
T d1a17a_ 130 FERAIAGDEHK 140 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhCcHHH
Confidence 66666544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.4e-13 Score=93.79 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+.++| ..++..|+|++|+.+|.+++++ +|....++.++|.+|..+|+|++|+..+++++
T Consensus 4 a~~~k~~G----------~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 4 ALKEKELG----------NDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34455677 7779999999999999999996 34556789999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.... ....+..+.++..+|.++. .++++++|+.+|++++...+
T Consensus 66 ~l~~~~-~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 66 EVGREN-REDYRQIAKAYARIGNSYF-KEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred HhCccc-HHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCC
Confidence 987664 3345667889999999997 99999999999999997655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.5e-13 Score=98.06 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+...| +.+...|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..|+++
T Consensus 9 ~a~~l~~~g----------n~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 70 (159)
T d1a17a_ 9 RAEELKTQA----------NDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRA 70 (159)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHH
Confidence 345556667 7779999999999999999996 4566788999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++. |....++.++|.++. .+|++++|+.++++++.+.|
T Consensus 71 l~~~--------p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 71 IELD--------KKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHc--------ccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 9874 666678999999997 99999999999999999887
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-12 Score=91.49 Aligned_cols=106 Identities=24% Similarity=0.274 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+.++|+.+ +..|+|++|+.+|.+++++ +|....++.++| .+|..+|+|++|+..
T Consensus 3 ~a~~~k~~G~~~----~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a----------~~~~~~~~~~~A~~~ 60 (128)
T d1elra_ 3 QALKEKELGNDA----YKKKDFDTALKHYDKAKEL--------DPTNMTYITNQA----------AVYFEKGDYNKCREL 60 (128)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHH----------HHHHHcCchHHHHHH
Confidence 355677899888 5999999999999999998 455678999999 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+++++++.... ....+..+.++.++|.++..++++++|+.+|++++..
T Consensus 61 ~~~al~l~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 61 CEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999987764 2345667889999999999999999999999999875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.50 E-value=6.9e-13 Score=97.92 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN-------NVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.+..+...| ..+...|+|.+|+..|.+|+.......... .+....++.|+|.||..+|++++|
T Consensus 14 ~a~~~~e~G----------~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~A 83 (168)
T d1kt1a1 14 QAAIVKEKG----------TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA 83 (168)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccc
Confidence 345566667 777999999999999999999865432221 233567788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
+.++++++.+. |....+++++|.++. .+|++++|+..|++++.+.|
T Consensus 84 i~~~~~al~l~--------p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P------------------------- 129 (168)
T d1kt1a1 84 VECCDKALGLD--------SANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNP------------------------- 129 (168)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCT-------------------------
T ss_pred hhhhhhhhhcc--------cchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-------------------------
Confidence 99999999873 566788999999997 99999999999999998887
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....+...++.+....+.+.+...
T Consensus 130 --~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 130 --QNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHhHHHHHH
Confidence 334556777777777776665444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-12 Score=97.04 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-------hhHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL-------LLTSAHRVKALILEEIALDSNELISVQ 104 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~~~~~~~ 104 (303)
..+..+...|+.+ +..|+|++|+..|++++++.....+..+. ....++.++| .+|...|
T Consensus 11 ~~a~~l~~~G~~~----~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~y~k~~ 76 (170)
T d1p5qa1 11 EQSTIVKERGTVY----FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA----------MCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH----------HHHHHTT
T ss_pred HHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHH----------HHHHhhh
Confidence 3567788899888 49999999999999999986654332222 2345566666 7779999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
++++|+.++++++.+ +|....++.++|.+|..+|++++|+..|++++++. |+++ .+...++.+.
T Consensus 77 ~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----P~n~---~~~~~l~~~~ 140 (170)
T d1p5qa1 77 AFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNK---AAKTQLAVCQ 140 (170)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCH---HHHHHHHHHH
T ss_pred hcccccchhhhhhhc--------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHH
Confidence 999999999999997 45567789999999999999999999999999874 3444 4566677777
Q ss_pred HHhhcCHHHHH-HHHHHHHH
Q psy4339 185 NYHMLEYHKAE-KLYFRSIE 203 (303)
Q Consensus 185 ~~~~g~~~~A~-~~~~~al~ 203 (303)
. ..+...+.. ..+.+.+.
T Consensus 141 ~-~~~~~~~~e~~~~~~~f~ 159 (170)
T d1p5qa1 141 Q-RIRRQLAREKKLYANMFE 159 (170)
T ss_dssp H-HHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHH
Confidence 5 666555443 23444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2e-13 Score=94.40 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.-+...|+.+ ...|+|++|+.+|.++++. +|..+.++.++| .+|...|++++|+..+.
T Consensus 4 ~~l~~~g~~~----~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a----------~~~~~~~~~~~A~~~~~ 61 (117)
T d1elwa_ 4 NELKEKGNKA----LSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRS----------AAYAKKGDYQKAYEDGC 61 (117)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CCcchhhhhccc----------ccccccccccccchhhh
Confidence 3456778877 5999999999999999987 566778999999 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+++.+ .|....++.++|.++..+|++++|+..|++++++. +++ ..++..++.+.
T Consensus 62 ~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----p~~---~~~~~~l~~l~ 115 (117)
T d1elwa_ 62 KTVDL--------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----ANN---PQLKEGLQNME 115 (117)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHH
T ss_pred hHHHh--------ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHh
Confidence 99996 34556789999999999999999999999999754 333 44555565543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1e-13 Score=114.14 Aligned_cols=181 Identities=8% Similarity=-0.096 Sum_probs=129.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|++++|+.++++++.. +|....++..+|.++ .+...+++++|+..+.+++.. +++
T Consensus 85 ~~~~~~~al~~~~~~l~~--------~pk~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~al~~-------~~~ 141 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLL--------SRLPEPNWARELELCARFLEA-------DER 141 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH--------HTCSSCCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCcHHHHHHhhHHH--------HHhccccHHHHHHHHHHHHhh-------Cch
Confidence 456678888888888876 566667778888443 112334589999999999996 222
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
.....+...|.++...+.+++|+.++++++.+ +|....+++++|.++. .+|++++|+..+++++.+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~ 212 (334)
T d1dcea1 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLP-QLHPQPDSGPQGRLPENVLLKEL 212 (334)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHH-HHSCCCCSSSCCSSCHHHHHHHH
T ss_pred hhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhHHHHH
Confidence 23334567889999999999999999998865 3566778999999997 99998888777766666665433
Q ss_pred hhhhh----------------------------------hhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 210 LFSAS----------------------------------YSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 210 ~~~~~----------------------------------~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
..... +..++...+++ ....+.+|....++..+|.++...|++
T Consensus 213 ~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH
Confidence 22111 11222223333 333456788889999999999999999
Q ss_pred HHHHHHHHHH
Q psy4339 253 EKMTEFTNKL 262 (303)
Q Consensus 253 ~~A~~~~~~~ 262 (303)
++|+++++.+
T Consensus 293 ~eA~~~~~~a 302 (334)
T d1dcea1 293 KETLQYFSTL 302 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999966554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=3.4e-13 Score=102.49 Aligned_cols=94 Identities=21% Similarity=0.115 Sum_probs=85.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|+|++|+.+|++|+.+ .|....++.++|.+|...|++++|+.+|++|+++. |....++
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--------p~~~~a~ 75 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAH 75 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--------CCcHHHH
Confidence 7779999999999999999997 35567789999999999999999999999998753 6667889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.++|.+|. .+|++++|+..|++++.+.|++
T Consensus 76 ~~lg~~~~-~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 76 FFLGQCQL-EMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 99999997 9999999999999999998843
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.47 E-value=6.7e-13 Score=96.35 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=85.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc--------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENN--------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 169 (303)
..++..|+|.+|+..|.+|+.+.......+. +....++.|+|.+|..+|++++|+.++++++++.
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~------- 97 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID------- 97 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-------
Confidence 7779999999999999999987654322221 1234678899999999999999999999999873
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|....+++++|.++. .+|++++|+.+|++++++.|
T Consensus 98 -p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 98 -KNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp -TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST
T ss_pred -chhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 666789999999997 99999999999999999988
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=1.1e-12 Score=96.97 Aligned_cols=100 Identities=18% Similarity=0.066 Sum_probs=86.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFG--------ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 169 (303)
..+...|+|++|+..|.+++........ ...|....++.++|.++..+|++++|+..+++|+++.
T Consensus 35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~------- 107 (169)
T d1ihga1 35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID------- 107 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-------
Confidence 6678999999999999999987543211 1246677889999999999999999999999999753
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|....+++++|.+|. .+|++++|+..|++++++.|
T Consensus 108 -p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 108 -PSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp -TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred -hhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCC
Confidence 666788999999997 99999999999999999988
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=1.4e-13 Score=104.63 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+...|+.+ +..|+|++|+.+|++|+++ +|..+.++.++| .+|...|++++|+..|
T Consensus 4 a~~l~~~Gn~~----~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg----------~~y~~~~~~~~Ai~~~ 61 (201)
T d2c2la1 4 AQELKEQGNRL----FVGRKYPEAAACYGRAITR--------NPLVAVYYTNRA----------LCYLKMQQPEQALADC 61 (201)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHH----------HHHhhhhhhhhhhHHH
Confidence 45677889888 5999999999999999998 566678999999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++|+++ .|....++.++|.+|..+|++++|+..|++|+++...
T Consensus 62 ~~al~l--------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 62 RRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999985 4566778999999999999999999999999998754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.45 E-value=4.7e-12 Score=93.36 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-------hhhHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-------LLLTSAHRVKALILEEIALDSNELISVQ 104 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~~~~~~~ 104 (303)
..+..+...|+.+ +..|+|.+|+..|.+|+........... +....++.|+| .+|..+|
T Consensus 13 ~~a~~~~e~G~~~----~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla----------~~~~~l~ 78 (168)
T d1kt1a1 13 EQAAIVKEKGTVY----FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA----------MCYLKLR 78 (168)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH----------HHHHHTT
T ss_pred HHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHH----------HHHHHhh
Confidence 4567888999888 5999999999999999998765433222 22455666777 7779999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
++++|+..+++++.+ +|....++.++|.++..+|++++|+..|++++.+. |....+...++.+.
T Consensus 79 ~~~~Ai~~~~~al~l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 79 EYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQIFMCQ 142 (168)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhc--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 999999999999986 45567889999999999999999999999999763 44445667777777
Q ss_pred HHhhcCHHH-HHHHHHHHHH
Q psy4339 185 NYHMLEYHK-AEKLYFRSIE 203 (303)
Q Consensus 185 ~~~~g~~~~-A~~~~~~al~ 203 (303)
. ..+.+.+ ....+.+.++
T Consensus 143 ~-~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 143 K-KAKEHNERDRRTYANMFK 161 (168)
T ss_dssp H-HHHHHHHHHHHHHHHHHH
T ss_pred H-HHHhHHHHHHHHHHHHHh
Confidence 6 6665543 4445554444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=9.2e-13 Score=91.42 Aligned_cols=94 Identities=17% Similarity=0.004 Sum_probs=79.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS---MQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+.+...+++++|++.|++++.+ .|....+++++|.++.. .+++++|+.++++++.. ...|...
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~~ 72 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchHH
Confidence 6668999999999999999996 45566789999999976 56777899999888753 2235556
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+++++|.+|. .+|++++|+.+|++++++.|
T Consensus 73 ~~~~~Lg~~y~-~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 73 DYVFYLAVGNY-RLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHhCc
Confidence 78999999997 99999999999999999988
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.42 E-value=2.1e-12 Score=93.70 Aligned_cols=124 Identities=15% Similarity=0.036 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh--------hhHHHHHHHHHHHHHHhhhhHHHHhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL--------LLTSAHRVKALILEEIALDSNELISV 103 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~~~~~~ 103 (303)
..+..+...|+.+ +..|+|.+|+..|.+++.+.......... ....++.|+| .+|..+
T Consensus 15 ~~a~~~~~~G~~~----f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla----------~~~~~l 80 (153)
T d2fbna1 15 QSAFDIKEEGNEF----FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA----------TCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH----------HHHHHT
T ss_pred HHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHH----------HHHHHh
Confidence 4566778899888 49999999999999999876543222211 1345667777 777999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
|++++|+..+++++++ +|....++.++|.++..+|++++|+.+|++++++. |....+...++.+
T Consensus 81 ~~~~~Al~~~~~al~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~ 144 (153)
T d2fbna1 81 KDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELC 144 (153)
T ss_dssp TCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHH
T ss_pred cccchhhhhhhccccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 9999999999999986 45667899999999999999999999999999885 3334455666666
Q ss_pred HH
Q psy4339 184 YN 185 (303)
Q Consensus 184 ~~ 185 (303)
..
T Consensus 145 ~~ 146 (153)
T d2fbna1 145 VN 146 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=5e-12 Score=93.30 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC--------cchhhhHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP--------ENHLLLTSAHRVKALILEEIALDSNELISVQ 104 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~ 104 (303)
.+..+...|..+ +..|+|++|+..|.++++....... ...|....++.++| .+|...|
T Consensus 26 ~a~~~~~~~~~~----~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~~~ 91 (169)
T d1ihga1 26 ISEDLKNIGNTF----FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG----------ACKLKMS 91 (169)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH----------HHHHHTT
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHH----------HHHHhhc
Confidence 344566778777 5899999999999999987543211 12455677788888 7779999
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
++++|+..+.+++++ +|....++.++|.+|..+|++++|+..|++++++. +++ ..+...++.+.
T Consensus 92 ~~~~Ai~~~~~al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-----p~n---~~~~~~l~~~~ 155 (169)
T d1ihga1 92 DWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PED---KAIQAELLKVK 155 (169)
T ss_dssp CHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhh--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHH
Confidence 999999999999985 45667889999999999999999999999999974 333 34566777777
Q ss_pred HHhhcCHHHH
Q psy4339 185 NYHMLEYHKA 194 (303)
Q Consensus 185 ~~~~g~~~~A 194 (303)
. ......++
T Consensus 156 ~-~l~~~~~~ 164 (169)
T d1ihga1 156 Q-KIKAQKDK 164 (169)
T ss_dssp H-HHHHHHHH
T ss_pred H-HHHHHHHH
Confidence 5 66655544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.7e-13 Score=116.05 Aligned_cols=191 Identities=12% Similarity=0.035 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH------
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH------ 83 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 83 (303)
+|+++|++|+++ .|+.+.++.++|.++ ..+|++++| |++++.. +|..+..+
T Consensus 4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~----~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~L 60 (497)
T d1ya0a1 4 QSAQYLRQAEVL--------KADMTDSKLGPAEVW----TSRQALQDL---YQKMLVT--------DLEYALDKKVEQDL 60 (497)
T ss_dssp HHHHHHHHHHHH--------HGGGTCSSSCSSSSH----HHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHhhHHHHH----HHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHH
Confidence 577899999988 566677888888777 578888876 6777654 22222211
Q ss_pred -----HHHHHHHHHHhhhh-------HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 84 -----RVKALILEEIALDS-------NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 84 -----~~la~~~~~~~~~~-------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.+....+....... ......+...+|...|..++..+.+..+. .|.....+.++|.++...|++++|
T Consensus 61 w~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A 139 (497)
T d1ya0a1 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAI 139 (497)
T ss_dssp HHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHH
Confidence 11111111100000 01112344556666666666655544322 355567788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
...+.+++... + ..++.++|.++. ..|++++|+.+|++|+.+.|
T Consensus 140 ~~~~~~al~~~--------~--~~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P------------------------- 183 (497)
T d1ya0a1 140 VKPQSSSCSYI--------C--QHCLVHLGDIAR-YRNQTSQAESYYRHAAQLVP------------------------- 183 (497)
T ss_dssp ---CCHHHHHH--------H--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------------
T ss_pred HHHHHHHhCCC--------H--HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCC-------------------------
Confidence 99999988653 2 357889999998 89999999999999999888
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
..+.++++||.++...|++.+|+. |.+++
T Consensus 184 --~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 184 --SNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp --TBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555668999999999999999998 44554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.38 E-value=1.5e-12 Score=89.19 Aligned_cols=93 Identities=9% Similarity=-0.198 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
...++|.++...|++++|+.++++++... |....++..+|.++. ..|++++|+.++++++++.|
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p------- 81 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------PEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDP------- 81 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc--------cccchhhhhhhhhhh-hhhhHHHhhccccccccccc-------
Confidence 35689999999999999999999999864 556788999999997 99999999999999999888
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+|.+|..+|++++|++.++..
T Consensus 82 --------------------~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 82 --------------------KDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55677999999999999999999966543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.38 E-value=2.1e-12 Score=88.38 Aligned_cols=88 Identities=11% Similarity=-0.060 Sum_probs=79.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++++. |....++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~ 87 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVH 87 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhcccccccccc--------cccccch
Confidence 6669999999999999999996 35567889999999999999999999999999874 5567789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
.++|.+|. .+|++++|++++++.+
T Consensus 88 ~~la~~y~-~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 88 AALAVSHT-NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHh
Confidence 99999998 9999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=2.1e-12 Score=106.17 Aligned_cols=114 Identities=5% Similarity=-0.072 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH-HHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS-AHRVKALILEEI 93 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 93 (303)
+.+|+..+++++. .+|....++..+|.++.. ...+++++|+..+.++++. +|.... .....|
T Consensus 89 ~~~al~~~~~~l~-~~pk~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~------ 151 (334)
T d1dcea1 89 VKAELGFLESCLR-VNPKSYGTWHHRCWLLSR--LPEPNWARELELCARFLEA--------DERNFHCWDYRRF------ 151 (334)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHT--CSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH------
T ss_pred HHHHHHHHHHHHH-hCCCcHHHHHHhhHHHHH--hccccHHHHHHHHHHHHhh--------CchhhhhhhhHHH------
Confidence 3344444444332 256677788888876631 2345689999999999987 333223 345667
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
.++...+.+++|+.++++++.. +|....++.++|.++..+|++++|...+++
T Consensus 152 ----~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 152 ----VAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp ----HHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred ----HHHHhccccHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5568899999999999988874 455667888899999888887765444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3.5e-12 Score=88.43 Aligned_cols=115 Identities=7% Similarity=-0.050 Sum_probs=87.1
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q psy4339 38 DELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNAL 117 (303)
Q Consensus 38 ~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 117 (303)
.++++.+ ...+++++|++.|++++.+ +|....+++++|+++ ......+++++|+..+++++
T Consensus 3 ~~l~n~~----~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L-------~~s~~~~d~~~Ai~~l~~~l 63 (122)
T d1nzna_ 3 EAVLNEL----VSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCL-------VRTRYNDDIRKGIVLLEELL 63 (122)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHH-------TTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHh----cCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH-------HHhcchHHHHHHHHHHHHHH
Confidence 3455556 5899999999999999998 566678999999444 11123667788999999888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 118 VLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
.. ...|....+++++|.+|..+|++++|+.+|++++++. |....+...++.+..
T Consensus 64 ~~------~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--------P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 64 PK------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--------PQNNQAKELERLIDK 117 (122)
T ss_dssp TT------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred hc------cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH
Confidence 73 2235556789999999999999999999999999974 444455556665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=1.9e-11 Score=87.53 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=75.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh----------hcHHHHHHHHHHHHHHHHHhcC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM----------QKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..+.+.+.|++|+..|++++++ +|..+.++.++|.++... +.+++|+..|++|+++.
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~----- 71 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----- 71 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-----
Confidence 4457889999999999999997 466778899999999855 55578899999888763
Q ss_pred CCchHHHHHHHHHHHHHHHhhcC-----------HHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLE-----------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~-----------~~~A~~~~~~al~~~~ 206 (303)
|....+++++|.+|. .+|+ +++|+.+|++++++.|
T Consensus 72 ---P~~~~a~~~lG~~y~-~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 72 ---PKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp ---TTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---chhhHHHhhHHHHHH-HcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 666778999999996 8764 6788888888888877
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=2.1e-11 Score=87.33 Aligned_cols=120 Identities=18% Similarity=0.079 Sum_probs=88.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
.+.+.|++|+..|++++++ +|..+.++.++|.++..++.........+.+++|+..|++|+++ +
T Consensus 8 ~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~ 71 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------c
Confidence 5788999999999999998 67778999999977654432222334567788999999999986 4
Q ss_pred HHHHHHHHHHHHHHHHhhc-----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQK-----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~ 193 (303)
|....++.++|.+|..+|+ |++|.++|++++++. |.....+..|+.+.. ..+.+.+
T Consensus 72 P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~L~~~~k-a~~~~~e 138 (145)
T d1zu2a1 72 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEMTAK-APQLHAE 138 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHT-HHHHHHH
T ss_pred chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHHHHHHHH-HHHHHHH
Confidence 6667789999999988764 688888888888764 444455566666554 3433333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1e-10 Score=77.10 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.+|.++..+|+|++|+.+|++|+++..... ...+..+.++.++|.++. .+|++++|+.++++++++.|
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCc
Confidence 4467999999999999999999999999876542 334567789999999996 99999999999999999988
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.5e-11 Score=106.36 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+|...|..++..+....+. +|.....+.++| ..+...|++++|...+.+++... ...+
T Consensus 96 ~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg----------~~~~~~~~~~~A~~~~~~al~~~----------~~~~ 154 (497)
T d1ya0a1 96 EAASGFYTQLLQELCTVFNV-DLPCRVKSSQLG----------IISNKQTHTSAIVKPQSSSCSYI----------CQHC 154 (497)
T ss_dssp HHHHHHHHHHHHHHTC------------------------------------------CCHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhH----------HHHHhCCCHHHHHHHHHHHhCCC----------HHHH
Confidence 44555555555544443322 355567778888 66689999999999999988752 2357
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
+.++|.++..+|++++|+.+|++|+++. |..+.+++++|.++. ..|++.+|+.+|.+++...+ .+..+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~---~~~~a 222 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKF---PFPAA 222 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSB---CCHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCC---CCHHH
Confidence 8899999999999999999999999874 777788999999998 99999999999999998877 34556
Q ss_pred hhhhhhhHHHHhhh------ccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 215 YSGLEYHYRDLKLF------SASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 215 ~~~l~~~~~a~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+.+|+..+...... ....+........+..++...+.+++..+..
T Consensus 223 ~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~ 273 (497)
T d1ya0a1 223 STNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLR 273 (497)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 66666554332111 1112234444555555666666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.6e-10 Score=75.18 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
++-.+.+|.++| .+|+|++|+.+|++|+++.... ....+..+.++.++| .++...|++++|+.++
T Consensus 5 addc~~lG~~~~----~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg----------~~~~~~g~~~~A~~~y 69 (95)
T d1tjca_ 5 AEDSFELGKVAY----TEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLS----------YAVYQQGDLDKALLLT 69 (95)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHh----------hHHHhcCChHHHHHHH
Confidence 345679998885 9999999999999999987764 223445788999999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
++++++ .|....++.|++.+...++
T Consensus 70 ~~aL~l--------~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 70 KKLLEL--------DPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CcCCHHHHHHHHHHHHHhC
Confidence 999997 3445567888877665443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.3e-08 Score=82.03 Aligned_cols=189 Identities=8% Similarity=-0.029 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEE 92 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 92 (303)
..++++.+++++.+....|.....+...+... ..+|++++|...|.++++. .+.++ ..++...+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~----~~~~~~~~a~~i~~~~l~~-----~~~~~--~~~w~~~~----- 141 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYE----ESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYM----- 141 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTS-----SSSCT--HHHHHHHH-----
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HhcccHHHHHHHHHHHHHH-----hcCCh--HHHHHHHH-----
Confidence 34455555555554333444555677777655 6899999999999998864 12222 23344445
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQ-SMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
......|+++.|...|.+++... |.....+...|.... ..|+.+.|..+|++++... |
T Consensus 142 -----~~~~~~~~~~~ar~i~~~al~~~--------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p 200 (308)
T d2onda1 142 -----KFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------G 200 (308)
T ss_dssp -----HHHHHHHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------T
T ss_pred -----HHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------h
Confidence 44578899999999999988742 222344556676543 4688999999999999865 4
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.....+...+.... ..|+++.|..+|++++...+ ..+. .....+......-...|+
T Consensus 201 ~~~~~w~~y~~~~~-~~g~~~~aR~~fe~ai~~~~---------------------~~~~--~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 201 DIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGS---------------------LPPE--KSGEIWARFLAFESNIGD 256 (308)
T ss_dssp TCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHSSS---------------------SCGG--GCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCC---------------------CChH--HHHHHHHHHHHHHHHcCC
Confidence 44566788889997 99999999999999998765 1111 223446666666677899
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
.+.+.+..+.+
T Consensus 257 ~~~~~~~~~r~ 267 (308)
T d2onda1 257 LASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998855443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=1.4e-07 Score=75.90 Aligned_cols=150 Identities=12% Similarity=-0.019 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 53 RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
..++|...|++|++. ..|.....+...+ .....+|+++.|...|.+++.. .+....
T Consensus 79 ~~~~a~~i~~ral~~-------~~p~~~~l~~~ya----------~~~~~~~~~~~a~~i~~~~l~~-------~~~~~~ 134 (308)
T d2onda1 79 FSDEAANIYERAIST-------LLKKNMLLYFAYA----------DYEESRMKYEKVHSIYNRLLAI-------EDIDPT 134 (308)
T ss_dssp HHHHHHHHHHHHHTT-------TTTTCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTS-------SSSCTH
T ss_pred chHHHHHHHHHHHHH-------cCCCCHHHHHHHH----------HHHHhcccHHHHHHHHHHHHHH-------hcCChH
Confidence 345566666665543 1233334555556 5558899999999999999874 122234
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFS 212 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 212 (303)
.++...+.+....|++++|...|++++... |.....+...|....+..|+.+.|..+|++++...|
T Consensus 135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p------ 200 (308)
T d2onda1 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------ 200 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh------
Confidence 467788999999999999999999997643 333345566676643256899999999999998877
Q ss_pred hhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 213 ASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 213 ~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
.....+...+......|+++.|..+++.
T Consensus 201 ---------------------~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 201 ---------------------DIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp ---------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---------------------hhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3345577788888888998888884433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=1.3e-07 Score=69.58 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch--------------hhhHHHHHHHHHHHHHHhhh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH--------------LLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~ 96 (303)
......+...|... ...|++++|...|.+|+++.......+. +....++.+++
T Consensus 8 ~~~f~~~~~~g~~~----~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la--------- 74 (179)
T d2ff4a2 8 LGRFVAEKTAGVHA----AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKA--------- 74 (179)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 45567888889777 6999999999999999987542211111 11234455556
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 170 (303)
.++...|++++|+.++++++.. +|....++..++.++...|++.+|+..|+++.....+..|.++
T Consensus 75 -~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 75 -EAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred -HHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7779999999999999999996 5666788999999999999999999999999988877666653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.73 E-value=2.9e-07 Score=72.08 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
+.++.+||..+ ...+++++|+.+|++|.+. ++ ..+..++|.++
T Consensus 2 p~~~~~lG~~~----~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y 44 (265)
T d1ouva_ 2 PKELVGLGAKS----YKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLY 44 (265)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 45889999766 5899999999999998654 12 35566677555
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=2.1e-07 Score=68.32 Aligned_cols=109 Identities=8% Similarity=-0.164 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC--------------cHHHHHHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN--------------NVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~ 144 (303)
....+...| ......|++++|...|.+|+.++.-....+ .+....++.++|.++..
T Consensus 10 ~f~~~~~~g----------~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 10 RFVAEKTAG----------VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677 666899999999999999999753211000 12345678899999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.|++++|+.++++++.+. |....++..++.++. ..|++.+|+..|+++.....
T Consensus 80 ~g~~~~Al~~~~~al~~~--------P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~ 132 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH--------PYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLA 132 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhC--------CccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999874 666678999999997 99999999999999988776
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.66 E-value=5.9e-08 Score=75.99 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=100.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+..++++++. +|.....+..+| .+++..|++++|+..+++++++ .
T Consensus 7 L~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La----------~lL~~~G~~e~A~~~l~~a~~l--------~ 60 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--------SPKDASLRSSFI----------ELLCIDGDFERADEQLMQSIKL--------F 60 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------C
Confidence 4789999999999999887 677788899999 7779999999999999999996 4
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|....++..++.++...+..+++.....+.. -..+|.....+...+.++. ..|++++|...++++.+..++.
T Consensus 61 P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~-~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSM-VSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCC
T ss_pred CCcHHHHHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCC
Confidence 5666677788888877777665544332211 1223555667778899997 9999999999999999998854
Q ss_pred h
Q psy4339 209 K 209 (303)
Q Consensus 209 ~ 209 (303)
+
T Consensus 133 ~ 133 (264)
T d1zbpa1 133 G 133 (264)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.48 E-value=1e-07 Score=74.60 Aligned_cols=119 Identities=12% Similarity=0.019 Sum_probs=89.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|++++|+..++++++. +|.....+.++|.+++..|++++|+..+++++++. |........+
T Consensus 7 L~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~~l 70 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGASQL 70 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Confidence 6789999999999999984 56777889999999999999999999999998864 6666677778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+.++. ..+..+++.....+. .....|.....+...+.++...|++++|.+..+
T Consensus 71 ~~ll~-a~~~~~~a~~~~~~~--------------------------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~ 123 (264)
T d1zbpa1 71 RHLVK-AAQARKDFAQGAATA--------------------------KVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123 (264)
T ss_dssp HHHHH-HHHHHHHHTTSCCCE--------------------------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH-hccccHHHHHHhhhh--------------------------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88876 665554433221111 112234555667788999999999999999665
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 124 ~a 125 (264)
T d1zbpa1 124 QI 125 (264)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=8.2e-06 Score=56.46 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=83.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
..|+++|+.+|+++.+. .++ .+..+++ . ....++++|+.+++++.+. ++
T Consensus 6 ~kd~~~A~~~~~kaa~~-------g~~---~a~~~l~----------~--~~~~~~~~a~~~~~~aa~~-------g~-- 54 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACEL-------NEM---FGCLSLV----------S--NSQINKQKLFQYLSKACEL-------NS-- 54 (133)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCT---THHHHHH----------T--CTTSCHHHHHHHHHHHHHT-------TC--
T ss_pred ccCHHHHHHHHHHHHHC-------CCh---hhhhhhc----------c--ccccCHHHHHHHHhhhhcc-------cc--
Confidence 45889999999998764 122 2334444 2 3456889999999998763 33
Q ss_pred HHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSI 202 (303)
Q Consensus 131 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al 202 (303)
..+...||.+|.. ..++++|+++|+++.+. .+ ..+..+||.+|. . ..++.+|..+|++|.
T Consensus 55 -~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~-~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 55 -GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQY-AGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp -HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHH
T ss_pred -hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHH-cCCccCCCHHHHHHHHHHHH
Confidence 3567889999986 56789999999999763 12 356789999986 4 358999999999998
Q ss_pred Hhhh
Q psy4339 203 EIND 206 (303)
Q Consensus 203 ~~~~ 206 (303)
+.-.
T Consensus 123 ~~G~ 126 (133)
T d1klxa_ 123 RLGS 126 (133)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.06 E-value=2.6e-05 Score=53.80 Aligned_cols=108 Identities=18% Similarity=0.090 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
..++++|+.+|+++.+. .++ .+..+||. ....++++|+++++++.+. . ...+.+.||.
T Consensus 6 ~kd~~~A~~~~~kaa~~-------g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g---~~~a~~~Lg~ 63 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACEL-------NEM---FGCLSLVS--NSQINKQKLFQYLSKACEL-------N---SGNGCRFLGD 63 (133)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCT---THHHHHHT--CTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHC-------CCh---hhhhhhcc--ccccCHHHHHHHHhhhhcc-------c---chhhhhhHHH
Confidence 46899999999999763 222 23445554 3467889999999998752 2 2356789999
Q ss_pred HHHHh----hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh----hhcHHH
Q psy4339 183 LYNYH----MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC----LENFEK 254 (303)
Q Consensus 183 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 254 (303)
+|. . ..++++|..+|+++.+... +.+...||.+|.. ..+.++
T Consensus 64 ~y~-~g~~~~~d~~~A~~~~~~aa~~g~-----------------------------~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 64 FYE-NGKYVKKDLRKAAQYYSKACGLND-----------------------------QDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHHHHHTTC-----------------------------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hhh-hccccchhhHHHHHHHhhhhccCc-----------------------------chHHHHHHHHHHcCCccCCCHHH
Confidence 985 4 3568999999999875432 3457889999886 568999
Q ss_pred HHHHHHHH
Q psy4339 255 MTEFTNKL 262 (303)
Q Consensus 255 A~~~~~~~ 262 (303)
|..+++..
T Consensus 114 A~~~~~~A 121 (133)
T d1klxa_ 114 AVKTFEKA 121 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99976554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=0.00015 Score=55.96 Aligned_cols=95 Identities=17% Similarity=0.160 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQL 156 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~ 156 (303)
..++++| ..+...+++++|+++|++|.+. ++ ..+..+||.+|.. ..++.+|..+++
T Consensus 3 ~~~~~lG----------~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~ 62 (265)
T d1ouva_ 3 KELVGLG----------AKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYA 62 (265)
T ss_dssp HHHHHHH----------HHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHH----------HHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhc
Confidence 5677888 6668999999999999999763 22 4578899999987 678999999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~~~ 206 (303)
.+... .++ .+...+|.++. . .++.+.|..+++++.....
T Consensus 63 ~a~~~-------~~~---~a~~~l~~~~~-~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 63 KACDL-------NYS---NGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHT-------TCH---HHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccccc-------ccc---chhhccccccc-cccccchhhHHHHHHHhhhhhhhh
Confidence 87652 222 34567777764 3 3577888888888876433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=3.1e-05 Score=51.83 Aligned_cols=70 Identities=11% Similarity=-0.091 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHh---hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 132 AKHYGNIGRLYQSM---QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 132 ~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
..+.++.|+++... .+.++|+.++++++.. ++.....++++||..|. ++|+|++|..++++++++.|++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCc
Confidence 57888999999854 5667888888877653 22345678999999995 9999999999999999999943
Q ss_pred h
Q psy4339 209 K 209 (303)
Q Consensus 209 ~ 209 (303)
.
T Consensus 107 ~ 107 (124)
T d2pqrb1 107 K 107 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.76 E-value=0.00024 Score=47.45 Aligned_cols=70 Identities=7% Similarity=-0.108 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...+.++.|+++ .-.....+.++|+..+++++.. ++.....++++||..|..+|+|++|..+++++
T Consensus 34 s~qt~F~YAw~L-------v~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 34 TIQSRFNYAWGL-------IKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp CHHHHHHHHHHH-------HHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHH-------HcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356777778555 2223557788899999888763 23344578999999999999999999999999
Q ss_pred HHHH
Q psy4339 159 IAIK 162 (303)
Q Consensus 159 l~~~ 162 (303)
+++.
T Consensus 100 L~ie 103 (124)
T d2pqrb1 100 FEHE 103 (124)
T ss_dssp HHHC
T ss_pred HccC
Confidence 9985
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.19 E-value=0.13 Score=37.96 Aligned_cols=108 Identities=13% Similarity=0.028 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhhCC---cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLP---ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
++=...+...+++....+- .+.......+...|..|.-++.....-.+..-.+.|...|++|+.+.+..+.+.+|..
T Consensus 88 ~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pir 167 (230)
T d2o02a1 88 TELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIR 167 (230)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 3444555666666543321 1122244555556655544432221112333456899999999999988778889988
Q ss_pred HHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQS-MQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 132 ~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~ 162 (303)
.....|.+.+++. +|+.++|.++.++|.+-.
T Consensus 168 LgL~LN~SVF~YEi~~~~~~A~~lak~afd~a 199 (230)
T d2o02a1 168 LGLALNFSVFYYEILNSPEKACSLAKTAFDEA 199 (230)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888887765 799999999999987654
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.91 E-value=0.2 Score=37.02 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhhCCc--chh-hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPE--NHL-LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+=...+...+++....+-+ .++ .....+...|..|.-++.....-....-.+.|...|++|..+......+.+|...
T Consensus 94 EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirL 173 (236)
T d1o9da_ 94 ELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRL 173 (236)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344555555555433211 122 2444455566555433321111122334678899999999998887888899988
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 133 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
....|.+.+|+. +|+.++|....++|.+-
T Consensus 174 gLaLN~SVF~yEi~~~~~~A~~lak~afd~ 203 (236)
T d1o9da_ 174 GLALNFSVFYYEILNSPDRACNLAKQAFDE 203 (236)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899988876 59999999988888754
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=95.87 E-value=0.2 Score=36.59 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+-...+...+++....+.+........+-..|..|.-++. ...|.-++|...|++|..+.....++.+|.....
T Consensus 93 ~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE-----~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGL 167 (220)
T d2o8pa1 93 KDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLE-----FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGF 167 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHH-----HhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 44555666777777666655333344445555655443331 2456778999999999999888777888888888
Q ss_pred HHHHHHHHHH-hhcHHHHHHHHHHHHHHHH
Q psy4339 135 YGNIGRLYQS-MQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 135 ~~~la~~~~~-~~~~~~A~~~~~~al~~~~ 163 (303)
..|.+.+++. +++.++|.++.+.|.+.+.
T Consensus 168 aLN~SVF~yEi~~~~~~A~~lAk~A~~~fd 197 (220)
T d2o8pa1 168 IQNLAYILSEKYGEKKQVFNMLNSLGKILE 197 (220)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8888887766 7999999999988855443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.28 E-value=0.35 Score=35.55 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhh----------cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQ----------KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 132 ~~~~~~la~~~~~~~----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~a 201 (303)
+..+-..|..|...- -.++|...|++|+++.++..++.+|.......|.+..+..-.|+.++|..+.++|
T Consensus 116 vFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~a 195 (230)
T d2o02a1 116 VFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTA 195 (230)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445566665542 2357999999999999887888889888888888877743679999999999999
Q ss_pred HHhhh
Q psy4339 202 IEIND 206 (303)
Q Consensus 202 l~~~~ 206 (303)
+...-
T Consensus 196 fd~ai 200 (230)
T d2o02a1 196 FDEAI 200 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
|
| >d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 protein cgd1 2980 species: Cryptosporidium parvum [TaxId: 5807]
Probab=94.85 E-value=0.46 Score=34.57 Aligned_cols=150 Identities=14% Similarity=-0.057 Sum_probs=87.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLF------GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH- 76 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~------~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 76 (303)
.+++++|.+.-.+.++.+...+- +..++....... -+ ...=-++=...+...+.+....+-+..
T Consensus 22 LsvayKn~ig~rR~s~R~i~sieqk~~~~~~~~~~~~~~i~----~y-----r~kie~EL~~~C~dii~lid~~Lip~~~ 92 (223)
T d3efza1 22 LAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQVIE----DI-----KRDFEESILLESEDVIRIIDDNLLMYSE 92 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HH-----HHHHHHHHHHHHHHHHHHHHHHTGGGCC
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHhHhhccccHHHHHHHH----HH-----HHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 35678888888887776653221 112222222111 11 122223444556667776665443221
Q ss_pred hh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHHHH-hhcHHHHH
Q psy4339 77 LL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKH--FGENNVQTAKHYGNIGRLYQS-MQKFDEAE 152 (303)
Q Consensus 77 ~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~-~~~~~~A~ 152 (303)
+. ....+...|..|.-++.....-.+..-.+.|...|++|+++.+.. ..|.+|.......|.+.+|+. +++.++|.
T Consensus 93 ~eskvFY~KmKgDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~ 172 (223)
T d3efza1 93 EGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM 172 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hHHHHHHHHHhchHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 333444556554433321111122334567999999999988763 346788888888888888876 89999999
Q ss_pred HHHHHHHHHH
Q psy4339 153 RMQLKAIAIK 162 (303)
Q Consensus 153 ~~~~~al~~~ 162 (303)
++.++|.+..
T Consensus 173 ~lAk~Afd~~ 182 (223)
T d3efza1 173 KFANRAIQAA 182 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888644
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=94.65 E-value=0.52 Score=34.27 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+...+.+....+.++.......+-..|..|.. .|.-++|...|++|.++.....++.+|.......|.+..+..-
T Consensus 99 c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi 178 (220)
T d2o8pa1 99 LQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEK 178 (220)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH
Confidence 33344444443433322233334455665544 4667899999999999988877788887777777777777436
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
.++.++|..+.++|.+.+.
T Consensus 179 ~~~~~~A~~lAk~A~~~fd 197 (220)
T d2o8pa1 179 YGEKKQVFNMLNSLGKILE 197 (220)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHH
Confidence 7999999999999865444
|
| >d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 protein cgd1 2980 species: Cryptosporidium parvum [TaxId: 5807]
Probab=92.55 E-value=1.2 Score=32.18 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=52.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHh
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLF--GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~ 70 (303)
++-+.+.|...|++|+++.+... .+.||-......|.+..+| ...++.++|....++|.+....
T Consensus 119 ~~~~~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~Y---Ei~~~~~~A~~lAk~Afd~~~~ 184 (223)
T d3efza1 119 KNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKY---DLLGNPEGAMKFANRAIQAAEN 184 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHh
Confidence 34577899999999999988743 5778888888888887776 6899999999999999876543
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.8 Score=27.01 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
-..+..+..-|.-+...|+|++|+++.++|........
T Consensus 5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~ 42 (83)
T d2crba1 5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 42 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999999999999988766543
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=1.2 Score=26.28 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+..+...|.-+. ..|+|++|+++.++|.....
T Consensus 6 N~AH~~~RrAer~l-~~~rydeAIech~kA~~yl~ 39 (83)
T d2crba1 6 NLAHQQSRRADRLL-AAGKYEEAISCHRKATTYLS 39 (83)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 45566777888897 99999999999999988766
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.20 E-value=7.2 Score=28.29 Aligned_cols=75 Identities=9% Similarity=-0.101 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhh----------cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQ----------KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 132 ~~~~~~la~~~~~~~----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~a 201 (303)
+..+-..|..|...- -.++|...|++|.++......+.+|.......|.+..|..-.|+.++|..+.+++
T Consensus 121 vFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~a 200 (236)
T d1o9da_ 121 VFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445566665532 2467899999999999887888899888888888888842459999999999998
Q ss_pred HHhhh
Q psy4339 202 IEIND 206 (303)
Q Consensus 202 l~~~~ 206 (303)
+...-
T Consensus 201 fd~ai 205 (236)
T d1o9da_ 201 FDEAI 205 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.47 E-value=4.3 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=19.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-..|+|++|+.+|.++++.+....
T Consensus 26 D~~g~y~eA~~~Y~~aie~l~~~~ 49 (93)
T d1wfda_ 26 DAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999998876643
|