Psyllid ID: psy4355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MESSGPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSEQ
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHEEEEEEcccHHccc
Coil and Loop (DISEMBL)
messgpdipnyklyfnYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLgavyelnakcfseq
Flexible Loop (DISEMBL)
messgpdipnykLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSEQ
Low Complexity Region (SEG)
MESSGPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSEQ
Disordered region (IsUnstruct)
********PNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF***
Disordered Region (DISOPRED)
******DIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE*
Disordered Region (DISEMBL)
MESSGPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSEQ
Disordered Region (DISPRO)
*****PDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESSGPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q25190	466	5-hydroxytryptamine recep	N/A	N/A	0.647	0.098	0.826	1e-15
P28285	834	5-hydroxytryptamine recep	yes	N/A	0.647	0.055	0.826	1e-15
P28286	617	5-hydroxytryptamine recep	no	N/A	0.647	0.074	0.826	2e-15
Q17239	446	5-hydroxytryptamine recep	N/A	N/A	0.633	0.100	0.822	2e-13
Q25414	509	5-hydroxytryptamine recep	N/A	N/A	0.704	0.098	0.66	3e-11
Q6XXY0	423	5-hydroxytryptamine recep	N/A	N/A	0.633	0.106	0.622	4e-09
Q6XXX9	423	5-hydroxytryptamine recep	yes	N/A	0.633	0.106	0.622	4e-09
O42384	416	5-hydroxytryptamine recep	N/A	N/A	0.661	0.112	0.595	5e-09
Q9N296	422	5-hydroxytryptamine recep	N/A	N/A	0.633	0.106	0.622	5e-09
Q9N297	422	5-hydroxytryptamine recep	N/A	N/A	0.633	0.106	0.622	6e-09

>sp|Q25190|5HTR_HELVI 5-hydroxytryptamine receptor OS=Heliothis virescens PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/46 (82%), Positives = 45/46 (97%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           NVFVIAAI++E+NLQ+VANYL+ SLAVADLMVACLVMPLGAVYE++
Sbjct: 80  NVFVIAAIIIERNLQNVANYLVASLAVADLMVACLVMPLGAVYEVS 125

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.
Heliothis virescens (taxid: 7102)

>sp|P28285|5HT2A_DROME 5-hydroxytryptamine receptor 2A OS=Drosophila melanogaster GN=5-HT1A PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/46 (82%), Positives = 44/46 (95%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           NVFVIAAI+LE+NLQ+VANYL+ SLAVADL VACLVMPLGAVYE++
Sbjct: 244 NVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEIS 289

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins which inhibit adenylate cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|P28286|5HT2B_DROME 5-hydroxytryptamine receptor 2B OS=Drosophila melanogaster GN=5-HT1B PE=2 SV=3

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/46 (82%), Positives = 44/46 (95%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           NVFVIAAI+LE+NLQ+VANYL+ SLAVADL VACLVMPLGAVYE++
Sbjct: 108 NVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEIS 153

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins which inhibit adenylate cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|Q17239|5HTR_BOMMO 5-hydroxytryptamine receptor OS=Bombyx mori PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 43/45 (95%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           NVFVIAAILLE++L+S AN LI+SLAVADL+VACLVMPLGAVYE+
Sbjct: 79  NVFVIAAILLERHLRSAANNLILSLAVADLLVACLVMPLGAVYEV 123

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.

Bombyx mori (taxid: 7091)

>sp|Q25414|5HTR_LYMST 5-hydroxytryptamine receptor OS=Lymnaea stagnalis PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF 68
           N FVIAA++LE++L +VANYLI+SLAVADLMVA LVMPL  V E++   F
Sbjct: 113 NCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLVMPLSVVSEISKVWF 162

This is a receptor for 5-hydroxytryptamine (serotonin), a biogenic hormone that function as a neurotransmitter, a hormone, and a mitogen.

Lymnaea stagnalis (taxid: 6523)

>sp|Q6XXY0|5HT1A_VULVU 5-hydroxytryptamine receptor 1A OS=Vulpes vulpes GN=HTR1A PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct: 54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Vulpes vulpes (taxid: 9627)

>sp|Q6XXX9|5HT1A_CANFA 5-hydroxytryptamine receptor 1A OS=Canis familiaris GN=HTR1A PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct: 54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Canis familiaris (taxid: 9615)

>sp|O42384|5H1AB_TAKRU 5-hydroxytryptamine receptor 1A-beta OS=Takifugu rubripes GN=htr1a-B PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          + N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct: 49 FGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 95

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Takifugu rubripes (taxid: 31033)

>sp|Q9N296|5HT1A_PONPY 5-hydroxytryptamine receptor 1A OS=Pongo pygmaeus GN=HTR1A PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct: 54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Pongo pygmaeus (taxid: 9600)

>sp|Q9N297|5HT1A_GORGO 5-hydroxytryptamine receptor 1A OS=Gorilla gorilla gorilla GN=HTR1A PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct: 54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Gorilla gorilla gorilla (taxid: 9595)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
350406053	399	PREDICTED: 5-hydroxytryptamine receptor	0.661	0.117	0.936	3e-16
383857481	399	PREDICTED: 5-hydroxytryptamine receptor	0.690	0.122	0.877	5e-16
283806662	402	serotonin receptor [Apis mellifera] gi|2	0.676	0.119	0.895	5e-16
380017427	401	PREDICTED: 5-hydroxytryptamine receptor	0.676	0.119	0.895	6e-16
340723850	399	PREDICTED: 5-hydroxytryptamine receptor	0.661	0.117	0.893	1e-15
226335535	683	serotonin 5-HT1 receptor [Periplaneta am	0.647	0.067	0.913	2e-15
170051859	239	5HT-dro2A receptor [Culex quinquefasciat	0.690	0.205	0.836	2e-15
160213432	540	type 1 serotonin receptor [Procambarus c	0.676	0.088	0.854	4e-15
242022993	483	class A rhodopsin-like G-protein coupled	0.676	0.099	0.875	5e-15
345487312	467	PREDICTED: 5-hydroxytryptamine receptor-	0.633	0.096	0.911	7e-15

>gi|350406053|ref|XP_003487639.1| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Bombus impatiens]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 47/47 (100%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNA 65
          N+FVIAAILLE+NLQSVANYLIVSLAVADLMVACLVMPLGAVYE+NA
Sbjct: 41 NLFVIAAILLERNLQSVANYLIVSLAVADLMVACLVMPLGAVYEINA 87

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857481|ref|XP_003704233.1| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Megachile rotundata]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNA 65
          + N+FVIAAILLE+NLQSVANYLIVSLAVADLMVACLVMPLGAVYE+N+
Sbjct: 39 FGNLFVIAAILLERNLQSVANYLIVSLAVADLMVACLVMPLGAVYEINS 87

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283806662|ref|NP_001164579.1| serotonin receptor [Apis mellifera] gi|283467327|emb|CBI75449.1| serotonin receptor [Apis mellifera]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 48/48 (100%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
          N+FVIAAILLE+NLQSVANYLIVSLAVADLMVACLVMPLGAVYE+N++
Sbjct: 42 NLFVIAAILLERNLQSVANYLIVSLAVADLMVACLVMPLGAVYEINSE 89

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017427|ref|XP_003692657.1| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Apis florea]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 48/48 (100%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
          N+FVIAAILLE+NLQSVANYLIVSLAVADLMVACLVMPLGAVYE+N++
Sbjct: 41 NLFVIAAILLERNLQSVANYLIVSLAVADLMVACLVMPLGAVYEINSE 88

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723850|ref|XP_003400301.1| PREDICTED: 5-hydroxytryptamine receptor 2B-like [Bombus terrestris]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/47 (89%), Positives = 47/47 (100%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNA 65
          N+FVIAAI+LE+NLQSVANYLIVSLAVADLMVACLVMPLGAVYE+N+
Sbjct: 41 NLFVIAAIMLERNLQSVANYLIVSLAVADLMVACLVMPLGAVYEINS 87

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226335535|emb|CAX65666.1| serotonin 5-HT1 receptor [Periplaneta americana]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/46 (91%), Positives = 46/46 (100%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           NVFVIAAILLE+NLQ+VANYLIVSLAVADLMVACLVMPLGAVYE++
Sbjct: 167 NVFVIAAILLERNLQNVANYLIVSLAVADLMVACLVMPLGAVYEIS 212

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051859|ref|XP_001861957.1| 5HT-dro2A receptor [Culex quinquefasciatus] gi|167872913|gb|EDS36296.1| 5HT-dro2A receptor [Culex quinquefasciatus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/49 (83%), Positives = 48/49 (97%)

Query: 18  RNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
           RNVFVIAAILLE+NLQSVAN+LI+SLAVADL+VACLVMPLGAVYE++ +
Sbjct: 71  RNVFVIAAILLERNLQSVANHLILSLAVADLLVACLVMPLGAVYEVSKE 119

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160213432|gb|ABX10973.1| type 1 serotonin receptor [Procambarus clarkii]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/48 (85%), Positives = 46/48 (95%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
           NVFVIAAILLE+NLQ VAN+LIVSLAVADLMVACLVMPLGAVYE++ +
Sbjct: 185 NVFVIAAILLERNLQQVANFLIVSLAVADLMVACLVMPLGAVYEISKE 232

Source: Procambarus clarkii

Species: Procambarus clarkii

Genus: Procambarus

Family: Cambaridae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022993|ref|XP_002431921.1| class A rhodopsin-like G-protein coupled receptor GPR5ht2, putative [Pediculus humanus corporis] gi|212517265|gb|EEB19183.1| class A rhodopsin-like G-protein coupled receptor GPR5ht2, putative [Pediculus humanus corporis]

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/48 (87%), Positives = 47/48 (97%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
           NVFVIAAILLEKNLQSVANYLI+SLAVADL+VACLVMPLGAVYE++ +
Sbjct: 92  NVFVIAAILLEKNLQSVANYLILSLAVADLLVACLVMPLGAVYEVSKQ 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487312|ref|XP_001603891.2| PREDICTED: 5-hydroxytryptamine receptor-like [Nasonia vitripennis]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/45 (91%), Positives = 45/45 (100%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           NVFVIAAILLE+NLQSVANYLI+SLAVADL+VACLVMPLGAVYE+
Sbjct: 94  NVFVIAAILLERNLQSVANYLILSLAVADLLVACLVMPLGAVYEV 138

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
FB|FBgn0263116	617	5-HT1B "Serotonin receptor 1B"	0.647	0.074	0.826	2.8e-14
FB|FBgn0004168	834	5-HT1A "Serotonin receptor 1A"	0.647	0.055	0.826	4.5e-14
ZFIN|ZDB-GENE-071203-1	398	htr1aa "5-hydroxytryptamine (s	0.633	0.113	0.644	6.7e-09
ZFIN|ZDB-GENE-090409-2	413	htr1ab "5-hydroxytryptamine (s	0.661	0.113	0.595	7.2e-09
UNIPROTKB|F1NAZ2	422	HTR1A "Uncharacterized protein	0.633	0.106	0.644	7.5e-09
MGI|MGI:96273	421	Htr1a "5-hydroxytryptamine (se	0.633	0.106	0.622	9.6e-09
UNIPROTKB|P08908	422	HTR1A "5-hydroxytryptamine rec	0.633	0.106	0.622	9.6e-09
UNIPROTKB|F1SKV3	422	HTR1A "Uncharacterized protein	0.633	0.106	0.622	9.6e-09
RGD|2845	422	Htr1a "5-hydroxytryptamine (se	0.633	0.106	0.622	9.6e-09
UNIPROTKB|P19327	422	Htr1a "5-hydroxytryptamine rec	0.633	0.106	0.622	9.6e-09

FB|FBgn0263116 5-HT1B "Serotonin receptor 1B" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 38/46 (82%), Positives = 44/46 (95%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
             NVFVIAAI+LE+NLQ+VANYL+ SLAVADL VACLVMPLGAVYE++
Sbjct:   108 NVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEIS 153

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=NAS;IDA;TAS

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=IDA;TAS

GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS

GO:0001586 "Gi/o-coupled serotonin receptor activity" evidence=NAS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0009649 "entrainment of circadian clock" evidence=IMP

FB|FBgn0004168 5-HT1A "Serotonin receptor 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 38/46 (82%), Positives = 44/46 (95%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
             NVFVIAAI+LE+NLQ+VANYL+ SLAVADL VACLVMPLGAVYE++
Sbjct:   244 NVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEIS 289

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=NAS;IDA;TAS

GO:0007208 "phospholipase C-activating serotonin receptor signaling pathway" evidence=IDA;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007210 "serotonin receptor signaling pathway" evidence=ISS

GO:0001586 "Gi/o-coupled serotonin receptor activity" evidence=NAS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

ZFIN|ZDB-GENE-071203-1 htr1aa "5-hydroxytryptamine (serotonin) receptor 1A a" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 29/45 (64%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  VIAAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    46 NACVIAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 90

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0097458 "neuron part" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-090409-2 htr1ab "5-hydroxytryptamine (serotonin) receptor 1A b" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             + N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    51 FGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 97

GO:0042310 "vasoconstriction" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0097458 "neuron part" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NAZ2 HTR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 29/45 (64%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  VIAAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    57 NACVIAAIALERSLQTVANYLIGSLAVTDLMVSVLVLPMAALYQV 101

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

MGI|MGI:96273 Htr1a "5-hydroxytryptamine (serotonin) receptor 1A" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

GO:0001965 "G-protein alpha-subunit binding" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO;IDA

GO:0007610 "behavior" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0031117 "positive regulation of microtubule depolymerization" evidence=ISO

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043203 "axon hillock" evidence=ISO

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0051378 "serotonin binding" evidence=ISO

GO:0060259 "regulation of feeding behavior" evidence=ISO

GO:0097114 "N-methyl-D-aspartate receptor clustering" evidence=ISO

GO:0097458 "neuron part" evidence=IEA

UNIPROTKB|P08908 HTR1A "5-hydroxytryptamine receptor 1A" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007610 "behavior" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007210 "serotonin receptor signaling pathway" evidence=TAS

UNIPROTKB|F1SKV3 HTR1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|2845 Htr1a "5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

GO:0001965 "G-protein alpha-subunit binding" evidence=IPI

GO:0004993 "serotonin receptor activity" evidence=IEA;ISO;IMP;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=IMP

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO;IMP

GO:0008144 "drug binding" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031117 "positive regulation of microtubule depolymerization" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043203 "axon hillock" evidence=IDA

GO:0051378 "serotonin binding" evidence=IDA

GO:0060259 "regulation of feeding behavior" evidence=IDA

GO:0097114 "N-methyl-D-aspartate receptor clustering" evidence=IDA

UNIPROTKB|P19327 Htr1a "5-hydroxytryptamine receptor 1A" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query:    19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
             N  V+AAI LE++LQ+VANYLI SLAV DLMV+ LV+P+ A+Y++
Sbjct:    54 NACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQV 98

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N298	5HT1A_PANTR	No assigned EC number	0.6222	0.6338	0.1066	yes	N/A
Q64264	5HT1A_MOUSE	No assigned EC number	0.6222	0.6338	0.1068	yes	N/A
P28285	5HT2A_DROME	No assigned EC number	0.8260	0.6478	0.0551	yes	N/A
P19327	5HT1A_RAT	No assigned EC number	0.6222	0.6338	0.1066	yes	N/A
P08908	5HT1A_HUMAN	No assigned EC number	0.6222	0.6338	0.1066	yes	N/A
Q6XXX9	5HT1A_CANFA	No assigned EC number	0.6222	0.6338	0.1063	yes	N/A
Q0EAB6	5HT1A_HORSE	No assigned EC number	0.6222	0.6338	0.1066	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	4e-07

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 24 AAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
            IL  K L++  N  +++LAVADL+    + P    Y + 
Sbjct: 1  LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVG 41

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG4219|consensus	423		99.43
PHA03234	338	DNA packaging protein UL33; Provisional	99.4
KOG4220|consensus	503		99.23
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.21
PHA02834	323	chemokine receptor-like protein; Provisional	99.17
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.99
PHA03235	409	DNA packaging protein UL33; Provisional	98.89
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.81
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.47
KOG2087|consensus	363		97.47
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	96.81
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	96.58
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	96.23
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	95.19
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	94.85
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	93.35
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	93.29

>KOG4219|consensus

Probab=99.43  E-value=6.8e-14  Score=89.05  Aligned_cols=59  Identities=25%  Similarity=0.400  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355          10 NYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus        10 ~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      +..+.+++||++|+|++..+|++|+.+|+|++|||+||+.++++..|+...+.+.+.|+
T Consensus        44 ~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~  102 (423)
T KOG4219|consen   44 LLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWY  102 (423)
T ss_pred             HHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence            34445689999999999999999999999999999999999999999988887777664

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.40  E-value=1.9e-12  Score=81.29  Aligned_cols=63  Identities=8%  Similarity=0.045  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHH--HhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q psy4355           7 DIPNYKLYFNYRNVFVIAAI--LLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE   70 (71)
Q Consensus         7 ~~~~~~l~~~~gN~~vi~~~--~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~~   70 (71)
                      ...+..++|++||.+++++.  .+++++|+++|+|+.|||+||++.+. ..|....+...+|.+|+
T Consensus        38 ~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~~~~w~fG~  102 (338)
T PHA03234         38 INGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNREALFNFNQ  102 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCccCch
Confidence            44556677899999999854  45566799999999999999999954 56766655433333443

>KOG4220|consensus

Probab=99.23  E-value=2.1e-13  Score=87.41  Aligned_cols=63  Identities=29%  Similarity=0.382  Sum_probs=58.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355           5 GPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC   67 (71)
Q Consensus         5 ~~~~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~   67 (71)
                      +.+...++++.++||++|+..+.-+|++||..|+|+++||+||++.+.+.+|+...+.+.++|
T Consensus        34 ~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W   96 (503)
T KOG4220|consen   34 VVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYW   96 (503)
T ss_pred             ehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHccc
Confidence            455667888889999999999999999999999999999999999999999999999988887

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.21  E-value=1.5e-10  Score=74.62  Aligned_cols=61  Identities=18%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE   70 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~~   70 (71)
                      ..+.+++|++||.+++++.. +|++|+++|+++.|||++|++. ....|+.+.+...+|.+|+
T Consensus       105 y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~~~~W~fg~  165 (417)
T PHA02638        105 YIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNEFDQWIFGD  165 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccc
Confidence            44566677999999997765 4788999999999999999998 5789998876644333443

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.17  E-value=1.9e-10  Score=71.62  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS   69 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~   69 (71)
                      ..+..+++++||+++++++.+++++ +++|+|+.|||++|++. ....|+.+.....++.+|
T Consensus        35 ~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~~~~w~~g   94 (323)
T PHA02834         35 YILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHNDLNEWIFG   94 (323)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHHcCCcCCc
Confidence            3445556799999999988776554 57899999999999986 678998876655443344

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.99  E-value=2.4e-09  Score=62.64  Aligned_cols=50  Identities=36%  Similarity=0.483  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355          18 RNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC   67 (71)
Q Consensus        18 gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~   67 (71)
                      ||.+++.++.++|++|++.++++.|||++|++.+....|........++|
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~   50 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDW   50 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSC
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccc
Confidence            89999999999999999999999999999999988888888777665444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.89  E-value=1.1e-08  Score=65.90  Aligned_cols=53  Identities=19%  Similarity=0.145  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cC-cccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLE-KN-LQSVANYLIVSLAVADLMVACLVMPLGAVY   61 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~-~~-l~~~~~~~l~nLa~aDll~~~~~~p~~~~~   61 (71)
                      ..+.+++|++||+++++++.++ |+ .++.+|+|+.|||++|++. ...+|+.+..
T Consensus        39 ~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~   93 (409)
T PHA03235         39 NLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS   93 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            3445566789999999875433 32 2356678999999999987 6788987653

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.81  E-value=9.8e-09  Score=63.87  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC   67 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~   67 (71)
                      ..+.+++|++||++++++..++ ++|++.|+++.|+|++|++.+ ...|........+.|
T Consensus        47 ~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~~~  104 (335)
T PHA03087         47 YSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQW  104 (335)
T ss_pred             HHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCCCC
Confidence            3345566799999999988777 889999999999999999874 467776645444444

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.47  E-value=8.1e-08  Score=58.53  Aligned_cols=48  Identities=27%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355          14 YFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY   61 (71)
Q Consensus        14 ~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~   61 (71)
                      +|+.||..++.++.++|++|+|+++++..+|++|++......|.....
T Consensus         3 ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~   50 (257)
T PF10320_consen    3 IGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL   50 (257)
T ss_pred             EEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            467899999999999999999999999999999999988888876633

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=97.47  E-value=6.3e-05  Score=48.12  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE   62 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~   62 (71)
                      .++...+++.||.+|++.....+...++..+++.|+|++|+++++...-....+.
T Consensus        31 vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~   85 (363)
T KOG2087|consen   31 VWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDA   85 (363)
T ss_pred             hhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhH
Confidence            3455667789999999888777777788899999999999999876655555443

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.81  E-value=0.011  Score=36.15  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHH
Q psy4355          12 KLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACL   53 (71)
Q Consensus        12 ~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~   53 (71)
                      +++|+..|.+++..+.+.+++|++-+.+-.+.|++|.+....
T Consensus         4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~   45 (274)
T PF10328_consen    4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLI   45 (274)
T ss_pred             eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999999998653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.58  E-value=0.0073  Score=37.54  Aligned_cols=50  Identities=18%  Similarity=0.384  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccc-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355          12 KLYFNYRNVFVIAAILLEKNLQS-VANYLIVSLAVADLMVACLVMPLGAVYE   62 (71)
Q Consensus        12 ~l~~~~gN~~vi~~~~~~~~l~~-~~~~~l~nLa~aDll~~~~~~p~~~~~~   62 (71)
                      +.+|+.+|.+-+.+. .+|++|+ +.|.++...|++|+.......+......
T Consensus         7 ~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~   57 (318)
T PF10324_consen    7 SIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFF   57 (318)
T ss_pred             eHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788998877766 5567786 8999999999999998888887776444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=96.23  E-value=0.08  Score=33.26  Aligned_cols=48  Identities=13%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHh---hcCcccHHHHHHHHHHHHHHHHHHHHhH
Q psy4355           9 PNYKLYFNYRNVFVIAAILL---EKNLQSVANYLIVSLAVADLMVACLVMP   56 (71)
Q Consensus         9 ~~~~l~~~~gN~~vi~~~~~---~~~l~~~~~~~l~nLa~aDll~~~~~~p   56 (71)
                      ..-.++|+.||+.++.+-..   +++.-.|.+..+.+||++.++.-....-
T Consensus        14 ~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~   64 (303)
T PF05296_consen   14 VVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILL   64 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34556789999998876542   3334478999999999999987554433

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=95.19  E-value=0.1  Score=33.04  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHH
Q psy4355          10 NYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLV   54 (71)
Q Consensus        10 ~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~   54 (71)
                      +-+.++++|-++++....+.|+.|++.+-++.-++++|++.....
T Consensus        15 ~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~   59 (303)
T PF05462_consen   15 VASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVAS   59 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence            345566899999999999999999999999999999999865443

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=94.85  E-value=0.44  Score=28.38  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=23.0

Q ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355          30 KNLQSVANYLIVSLAVADLMVACLVMPLGAVY   61 (71)
Q Consensus        30 ~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~   61 (71)
                      +++|...+-++.||.++|++.++..+.....+
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~   61 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRW   61 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677799999999999877655433333

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=93.35  E-value=1.3  Score=28.22  Aligned_cols=45  Identities=13%  Similarity=0.145  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVAC   52 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~   52 (71)
                      ..+++++...-....+.++.+++..|.+.|-...-||+.|+....
T Consensus        39 ~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~   83 (313)
T PF10321_consen   39 FLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLF   83 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence            344555555667777888888777789999999999999999754

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.29  E-value=0.61  Score=28.95  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CcccHHHHHHHHHHHHHHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEK-NLQSVANYLIVSLAVADLMVACL   53 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~-~l~~~~~~~l~nLa~aDll~~~~   53 (71)
                      ..+++.+|+.-|.+.+..+.++. +.-+...+++.|-|+.|+..+..
T Consensus         5 ~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~   51 (292)
T PF10317_consen    5 HPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIIS   51 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577788899999998776554 32345678999999999997543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		7e-07
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		1e-05
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-05
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-05
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-05
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-05
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		2e-05
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		2e-05
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		2e-05
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		4e-05
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		4e-05
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		4e-05
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		4e-05
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		7e-05
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		1e-04
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		2e-04
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		2e-04
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		4e-04
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		8e-04

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMP 56
          + N  V  A+L E+ LQ+  NYL+VSLAVADL+VA LVMP
Sbjct: 54 FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
          N+ V+ A+  E+ L +V N  IVSL+VADL+V  +VMP+  +Y L +K
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK 73

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17  YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 198 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 244

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17  YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 57  FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 103

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17  YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 56  FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 102

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17  YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 57  FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 103

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 50 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 96

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 49 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 95

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 26 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 72

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 21 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 67

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
          NV VIAAI   + LQ++ N  I SLA ADL+V  LV+P GA
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
          NV VIAAI   + LQ++ N  I SLA ADL+V  LV+P GA
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
          + NV VI AI   + LQ+V NY I SLA ADL++   V+P GA
Sbjct: 25 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA 67

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
          NV V  A+ L  NLQ+V NY +VSLA AD+ V  L +P  
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 78

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
          NV V  A+ L  NLQ+V NY +VSLA AD++V  L +P  
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA 63

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
          NV V  A+ L  NLQ+V NY +VSLA AD+ V  L +P  
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
          NV V  A+ L  NLQ+V NY +VSLA AD+ V  L +P  
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 63

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
          NV V  A+ L  NLQ+V NY +VS A AD++V  L +P  
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA 63

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
          N+ VI A  + K L++V NY ++SLA ADL++  + M L   Y
Sbjct: 30 NILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTY 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-21
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-21
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	5e-21
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	8e-21
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-19
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	3e-19
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-19
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	5e-18
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	3e-16
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-09
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-08
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	9e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-06
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	5e-06
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	7e-06

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 85.1 bits (210), Expect = 1e-21
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 58  NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 102

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 84.4 bits (208), Expect = 2e-21
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           N  V  A+L E+ LQ+  NYL+VSLAVADL+VA LVMP     E+ 
Sbjct: 56  NGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT 101

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 83.2 bits (205), Expect = 5e-21
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
          N+ V+ A+  E+ L +V N  IVSL+VADL+V  +VMP+  +Y L 
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 82.8 bits (204), Expect = 8e-21
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          N+ V+ +I + ++LQ+V NY + SLA ADL++    M L  +Y +
Sbjct: 41 NILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV 85

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 78.9 bits (194), Expect = 2e-19
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
          NV V  A+ L  NLQ+V NY +VSLA AD+ V  L +P        
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTG 94

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
           NV VI AI   + LQ+V NY I SLA ADL++   V+P GA + L
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 244

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 78.6 bits (193), Expect = 3e-19
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE 62
          NV V  A+ L  NLQ+V NY +VSLA AD+ V  L +P      
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS 82

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 74.4 bits (183), Expect = 5e-18
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
          NV VIAAI   + LQ++ N  I SLA ADL+V  LV+P GA   +
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 69.9 bits (170), Expect = 3e-16
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS 69
           N+FV+  I   K       Y I +LA++DL+          +        +
Sbjct: 81  NIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLT 131

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
          NV V+  IL  K +++V NY +V+LA A+  +A     +   Y ++
Sbjct: 50 NVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH 95

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 47.0 bits (112), Expect = 4e-08
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           N   +   +  K L++  NY++++LAVADL +            L+
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 101

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVM 55
          N  VI      K+LQ+ AN  I++LA +D   + +  
Sbjct: 52 NGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNG 88

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
          N  V+  I+    +++  N  I +LA+AD +     +P  +V 
Sbjct: 35 NFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPFQSVN 76

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 19  NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
           N  VI  +  +K L+S+ +   + L+VADL+   + +P  AV  + 
Sbjct: 66  NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVA 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.54
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.43
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.42
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.42
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.41
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.41
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.4
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.38
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.38
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.38
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.37
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.35
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.34
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.32
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.31
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.31
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.3
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.28
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	95.66

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.54  E-value=4.7e-14  Score=84.39  Aligned_cols=59  Identities=31%  Similarity=0.377  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q psy4355          10 NYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS   69 (71)
Q Consensus        10 ~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~   69 (71)
                      +..++|++||.++++++.++|++|+++|+|+.|||++|++.+ ...|....+...++.+|
T Consensus        20 ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~-l~~p~~~~~~~~~~~~~   78 (296)
T 2lnl_A           20 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFA-LTLPIWAASKVNGWIFG   78 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHH-HhhhHHHhhccCCCccc
Confidence            445567899999999999999999999999999999999985 46787777766654444

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.43  E-value=4.6e-13  Score=85.35  Aligned_cols=61  Identities=39%  Similarity=0.472  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      +.+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++..+|..+.+...+.|.
T Consensus        47 ~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~  107 (500)
T 2rh1_A           47 MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT  107 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3445566799999999999999999999999999999999999999999998888777664

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.42  E-value=9.6e-13  Score=80.27  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           9 PNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         9 ~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      .+.+++|++||.++++++.++|++|+++|+++.|||++|++.+....|..+.....+.|.
T Consensus        40 ~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~   99 (364)
T 2ks9_A           40 TVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWY   99 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            345566799999999999999999999999999999999999888999988877777664

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.42  E-value=6.3e-13  Score=82.79  Aligned_cols=62  Identities=37%  Similarity=0.477  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           7 DIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         7 ~~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ++.+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++..+|..+.+...+.|.
T Consensus        14 ~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~   75 (452)
T 3rze_A           14 VLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWS   75 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            44556677899999999999999999999999999999999999999999999888877764

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.41  E-value=8.3e-13  Score=84.67  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY   61 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~   61 (71)
                      +.+.+++|++||+++++++.+++++|+++|+|+.|||++|+++++...|..+..
T Consensus        70 ~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~  123 (520)
T 3v2y_A           70 FILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS  123 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344566679999999999999999999999999999999999999888888766

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.41  E-value=1.1e-12  Score=82.06  Aligned_cols=61  Identities=30%  Similarity=0.438  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ..+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++...|..+.....+.|.
T Consensus        30 ~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~   90 (467)
T 3uon_A           30 AGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWP   90 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3345566799999999999999999999999999999999999999999999888877764

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.40  E-value=2.2e-12  Score=80.40  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ..+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++. +|..+.....+.|.
T Consensus        24 ~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~   83 (464)
T 4dkl_A           24 YSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWP   83 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcc
Confidence            3445666799999999999999999999999999999999998665 99988888777764

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.38  E-value=1.9e-12  Score=78.29  Aligned_cols=61  Identities=20%  Similarity=0.171  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ..+.+++|++||.+++.++.+++++|+++|+++.|||++|++.+....|..+.....+.|.
T Consensus        45 ~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~  105 (349)
T 1u19_A           45 MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV  105 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeee
Confidence            3445667799999999999999999999999999999999999888899988777766663

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.38  E-value=2.7e-12  Score=80.56  Aligned_cols=62  Identities=42%  Similarity=0.508  Sum_probs=53.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-ccc
Q psy4355           6 PDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN-AKC   67 (71)
Q Consensus         6 ~~~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~-~~~   67 (71)
                      ..+.+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++..+|..+..... +.|
T Consensus        43 ~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~  105 (481)
T 3pbl_A           43 LSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW  105 (481)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            34556677789999999999999999999999999999999999999999998877665 445

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.38  E-value=7e-13  Score=78.98  Aligned_cols=61  Identities=39%  Similarity=0.496  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ..+.+++|++||.+++.++.+++++|+++|+++.|||++|++.+....|..+.....+.|.
T Consensus        18 ~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~   78 (315)
T 4amj_A           18 MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWL   78 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCee
Confidence            3445667799999999999999999999999999999999999888999988887777764

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.37  E-value=8.8e-13  Score=84.47  Aligned_cols=56  Identities=25%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy4355           9 PNYKLYFNYRNVFVIAAILLEKN---LQSVANYLIVSLAVADLMVACLVMPLGAVYELN   64 (71)
Q Consensus         9 ~~~~l~~~~gN~~vi~~~~~~~~---l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~   64 (71)
                      .+.+++|++||+++++++.++|+   +|+++|+|+.|||++|++++++.+|+.+.+...
T Consensus        40 ~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~   98 (510)
T 4grv_A           40 LALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIW   98 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678999999999887764   458999999999999999999999999887653

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=80.04  Aligned_cols=60  Identities=17%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL-NAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~-~~~~~   68 (71)
                      +.+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++. .|....... .+.|.
T Consensus        27 ~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~   87 (484)
T 3vw7_A           27 YTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQ   87 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcc
Confidence            3445666799999999999999999999999999999999999654 565555444 43553

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.34  E-value=3.2e-12  Score=81.61  Aligned_cols=61  Identities=39%  Similarity=0.495  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      ..+.+++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+.....+.|.
T Consensus       189 ~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~  249 (514)
T 3sn6_R          189 MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWT  249 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCee
Confidence            3445667799999999999999999999999999999999999888999998888777664

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.32  E-value=3.7e-12  Score=80.28  Aligned_cols=58  Identities=26%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK   66 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~   66 (71)
                      +.+.+++|++||+++++++.+++++|+++|+|+.|||++|++. .+.+|..+.....++
T Consensus        55 ~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~-~~~~p~~~~~~~~~~  112 (502)
T 3odu_A           55 YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVANW  112 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Confidence            3445566799999999999999999999999999999999999 578999888776643

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.31  E-value=7.7e-12  Score=77.77  Aligned_cols=55  Identities=36%  Similarity=0.484  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE   62 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~   62 (71)
                      ..+.+++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+...
T Consensus        38 ~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~   92 (447)
T 4eiy_A           38 ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS   92 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445667799999999999999999999999999999999999899999887644

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.31  E-value=6.1e-12  Score=78.86  Aligned_cols=56  Identities=36%  Similarity=0.468  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL   63 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~   63 (71)
                      ..+.+++|++||+++++++.+++++|+++|+|+.|||++|++.++..+|..+....
T Consensus        28 ~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~   83 (488)
T 3eml_A           28 ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST   83 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34456677999999999999999999999999999999999999999998876543

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.28  E-value=1.3e-11  Score=77.34  Aligned_cols=60  Identities=25%  Similarity=0.207  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhhcccC
Q psy4355           9 PNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLV-MPLGAVYELNAKCF   68 (71)
Q Consensus         9 ~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~-~p~~~~~~~~~~~~   68 (71)
                      .+.+++|++||+++++++.++|++|+++|+++.|||++|++.++.. +|..+.....+.|.
T Consensus        42 ~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~  102 (448)
T 2z73_A           42 GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWI  102 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCC
T ss_pred             HHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCcc
Confidence            3455677999999999999999999999999999999999987764 88888777666663

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=95.66  E-value=0.00066  Score=32.92  Aligned_cols=24  Identities=17%  Similarity=-0.024  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCc
Q psy4355           9 PNYKLYFNYRNVFVIAAILLEKNL   32 (71)
Q Consensus         9 ~~~~l~~~~gN~~vi~~~~~~~~l   32 (71)
                      .+.+++|++||+++++++.++|.-
T Consensus        36 ~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           36 MLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             HHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHhhhhhheeeeeEeccc
Confidence            334455689999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-08

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.9 bits (110), Expect = 1e-08
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPL 57
          N   +   +  K L++  NY++++LAVADL +       
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.41

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=4.5e-13  Score=79.75  Aligned_cols=61  Identities=20%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355           8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF   68 (71)
Q Consensus         8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~   68 (71)
                      +.+.+++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....++|.
T Consensus        44 ~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~  104 (348)
T d1u19a_          44 MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV  104 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Confidence            3445667799999999999999999999999999999999999888899888887776664