Psyllid ID: psy4370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MPLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNADPV
Secondary Structure (PSIPRED)
ccccHHcccccHHHHccccccccEEccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHccHccccccccccEEEEEEccccccccccccccccHcccccHHHHcccccccccccHHHcccccccccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHcccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mpltwevyeewpfsrkhmskqrvmspfkpglSLLWACyrghnqgksvsgkssskrkadeiwsdglvplsrspldpylsdtlppsvtitdaclPVLTLLRVLNAVNrnwggsswdMKTLMECcridhgynhnSKAIKYLFHVLScysspeqrdflqfvtgsprlpvgaktkcqpKAITLGLIERLTKNADPV
Flexible Loop (DISEMBL)
mpltwevyeewpfsrkhmskqrVMSPFKPGLSLLWACYRGHnqgksvsgkssskrkaDEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRnwggsswdMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVtgsprlpvgaktkcqpkaitlglierltknadpv
Low Complexity Region (SEG)
MPLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYRGHNQgksvsgkssskrkADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNADPV
Disordered region (IsUnstruct)
***TWEVYEEWPFS*********MSPFKPGLSLLWACYRG***********************GLV*******DPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIER********
Disordered Region (DISOPRED)
*PLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWAC********SVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGL***********
Disordered Region (DISEMBL)
MPLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYRGHN****************EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNADPV
Disordered Region (DISPRO)
MPLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYR*****************ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIE*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLTWEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNADPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
F1RCR6	2026	E3 ubiquitin-protein liga	yes	N/A	0.408	0.038	0.551	1e-19
B4F6W9	2056	E3 ubiquitin-protein liga	yes	N/A	0.392	0.036	0.545	3e-19
E1B7Q7	1992	E3 ubiquitin-protein liga	yes	N/A	0.418	0.040	0.525	3e-19
F1LP64	2025	E3 ubiquitin-protein liga	yes	N/A	0.418	0.039	0.525	3e-19
Q14669	1992	E3 ubiquitin-protein liga	yes	N/A	0.418	0.040	0.525	3e-19
G5E870	2025	E3 ubiquitin-protein liga	yes	N/A	0.418	0.039	0.525	4e-19
Q6WWW4	1888	E3 ubiquitin-protein liga	yes	N/A	0.324	0.032	0.451	8e-10
Q9LYZ7	1502	E3 ubiquitin-protein liga	no	N/A	0.324	0.041	0.419	5e-09
Q10435	1647	Probable ubiquitin fusion	yes	N/A	0.371	0.043	0.405	1e-08
P33202	1483	Ubiquitin fusion degradat	yes	N/A	0.324	0.041	0.403	5e-08

>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            SWD+KTLMECCR DHGY H+S+A+++LF VLS + + +QR FLQFVTGSPRLPVG     
Sbjct: 1907 SWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSL 1966

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1967 NPPLTIVRKTFESTENPD 1984

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 52/77 (67%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            WD+KTLMECCR DHGY H+S+A+K+LF +LS +   +QR FLQFVTGSPRLPVG      
Sbjct: 1938 WDVKTLMECCRPDHGYTHDSRAVKFLFEILSSFDKEQQRLFLQFVTGSPRLPVGGFRSLN 1997

Query: 173  PKAITLGLIERLTKNAD 189
            P    +      T+N D
Sbjct: 1998 PPLTIVRKTFEATENPD 2014

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 110  GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
              +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG   
Sbjct: 1871 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1930

Query: 170  KCQPKAITLGLIERLTKNAD 189
               P    +      T+N D
Sbjct: 1931 SLNPPLTIVRKTFESTENPD 1950

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 110  GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
              +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG   
Sbjct: 1904 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1963

Query: 170  KCQPKAITLGLIERLTKNAD 189
               P    +      T+N D
Sbjct: 1964 SLNPPLTIVRKTFESTENPD 1983

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 110  GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
              +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG   
Sbjct: 1871 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1930

Query: 170  KCQPKAITLGLIERLTKNAD 189
               P    +      T+N D
Sbjct: 1931 SLNPPLTIVRKTFESTENPD 1950

Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 110  GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
              +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG   
Sbjct: 1904 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1963

Query: 170  KCQPKAITLGLIERLTKNAD 189
               P    +      T+N D
Sbjct: 1964 SLNPPLTIVRKTFESTENPD 1983

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            W+++TL E  + DHGYN  S AI  L  ++   ++ +QR F QFVTG+PRLP G      
Sbjct: 1760 WEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLN 1819

Query: 173  PK 174
            PK
Sbjct: 1820 PK 1821

Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            + M  +++  + DHGY  +S  ++YL  +L  +   +QR FLQFVTGSPRLP G      
Sbjct: 1386 FSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLS 1445

Query: 173  PK 174
            PK
Sbjct: 1446 PK 1447

Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            W   TLM+    DHGY   S  I+ L  ++S  +  EQRDFLQF+TGS +LP+G      
Sbjct: 1529 WSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLN 1588

Query: 173  PKAITLGLIERLTK 186
            P    L ++ RL +
Sbjct: 1589 PP---LTVVRRLNE 1599

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            W M TL      +HGY  +S  I     ++S +   E+R FLQF+TGSP+LP+G      
Sbjct: 1365 WSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLN 1424

Query: 173  PK 174
            PK
Sbjct: 1425 PK 1426

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
405954644	1942	Putative E3 ubiquitin-protein ligase TRI	0.319	0.031	0.672	1e-18
326925872	1941	PREDICTED: probable E3 ubiquitin-protein	0.408	0.040	0.564	3e-18
449509621	2047	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.408	0.038	0.564	3e-18
118095059	1995	PREDICTED: probable E3 ubiquitin-protein	0.408	0.039	0.564	3e-18
449278559	2034	putative E3 ubiquitin-protein ligase TRI	0.408	0.038	0.564	3e-18
291235604	2140	PREDICTED: thyroid hormone receptor inte	0.287	0.025	0.709	3e-18
326676216	2022	PREDICTED: probable E3 ubiquitin-protein	0.408	0.038	0.551	6e-18
149636580	2026	PREDICTED: probable E3 ubiquitin-protein	0.408	0.038	0.551	6e-18
408407543	2026	RecName: Full=E3 ubiquitin-protein ligas	0.408	0.038	0.551	7e-18
149636582	1999	PREDICTED: probable E3 ubiquitin-protein	0.408	0.039	0.551	7e-18

>gi|405954644|gb|EKC22028.1| Putative E3 ubiquitin-protein ligase TRIP12 [Crassostrea gigas]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 46/61 (75%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
            WD+K LMECCR DHGY H+S+A+ +LF VLSCY   EQR FLQFVTGSPRLPVG      
Sbjct: 1824 WDVKMLMECCRPDHGYTHDSRAVNFLFEVLSCYDDVEQRQFLQFVTGSPRLPVGGFRSLN 1883

Query: 173  P 173
            P
Sbjct: 1884 P 1884

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|326925872|ref|XP_003209132.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like [Meleagris gallopavo]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + S +QR FLQFVTGSPRLPVG     
Sbjct: 1822 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSL 1881

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1882 NPPLTIVRKTFESTENPD 1899

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449509621|ref|XP_004176494.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12 [Taeniopygia guttata]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + S +QR FLQFVTGSPRLPVG     
Sbjct: 1928 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSL 1987

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1988 NPPLTIVRKTFESTENPD 2005

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118095059|ref|XP_422603.2| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12 [Gallus gallus]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + S +QR FLQFVTGSPRLPVG     
Sbjct: 1876 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSL 1935

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1936 NPPLTIVRKTFESTENPD 1953

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449278559|gb|EMC86370.1| putative E3 ubiquitin-protein ligase TRIP12 [Columba livia]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + S +QR FLQFVTGSPRLPVG     
Sbjct: 1915 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSL 1974

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1975 NPPLTIVRKTFESTENPD 1992

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291235604|ref|XP_002737735.1| PREDICTED: thyroid hormone receptor interactor 12-like [Saccoglossus kowalevskii]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 113  WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
            W+MKTLM+CCR DHGYNH+S+A+K LF +L+ Y+S +QR FLQFVTGSPRLPVG 
Sbjct: 2022 WEMKTLMDCCRPDHGYNHDSRAVKLLFEILTFYNSEQQRQFLQFVTGSPRLPVGG 2076

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|326676216|ref|XP_001919036.3| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12 [Danio rerio]

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            SWD+KTLMECCR DHGY H+S+A+++LF VLS + + +QR FLQFVTGSPRLPVG     
Sbjct: 1903 SWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSL 1962

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1963 NPPLTIVRKTFESTENPD 1980

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149636580|ref|XP_001505268.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12 isoform 1 [Ornithorhynchus anatinus]

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct: 1907 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1966

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1967 NPPLTIVRKTFESTENPD 1984

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|408407543|sp|F1RCR6.1|TRIPC_DANRE RecName: Full=E3 ubiquitin-protein ligase TRIP12; AltName: Full=Thyroid receptor-interacting protein 12; Short=TR-interacting protein 12; Short=TRIP-12

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            SWD+KTLMECCR DHGY H+S+A+++LF VLS + + +QR FLQFVTGSPRLPVG     
Sbjct: 1907 SWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSL 1966

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1967 NPPLTIVRKTFESTENPD 1984

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149636582|ref|XP_001505299.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12 isoform 2 [Ornithorhynchus anatinus]

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 53/78 (67%)

Query: 112  SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
            +WD KTLMECCR DHGY H+S+A+KYLF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct: 1880 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1939

Query: 172  QPKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct: 1940 NPPLTIVRKTFESTENPD 1957

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
UNIPROTKB|E1BZV7	2035	TRIP12 "Uncharacterized protei	0.408	0.038	0.564	1e-28
UNIPROTKB|E1B7Q7	1992	TRIP12 "E3 ubiquitin-protein l	0.408	0.039	0.538	1.6e-28
UNIPROTKB|Q14669	1992	TRIP12 "E3 ubiquitin-protein l	0.408	0.039	0.538	5.4e-28
MGI|MGI:1309481	2025	Trip12 "thyroid hormone recept	0.408	0.038	0.538	5.6e-28
RGD|1306607	2025	Trip12 "thyroid hormone recept	0.408	0.038	0.538	5.6e-28
UNIPROTKB|F6X7F9	1980	TRIP12 "Uncharacterized protei	0.408	0.039	0.538	1.1e-27
UNIPROTKB|E2R657	1993	TRIP12 "Uncharacterized protei	0.408	0.039	0.538	1.1e-27
UNIPROTKB|J9NRQ4	2011	TRIP12 "Uncharacterized protei	0.408	0.038	0.538	1.1e-27
ZFIN|ZDB-GENE-041111-262	2095	trip12 "thyroid hormone recept	0.408	0.037	0.551	1.4e-26
UNIPROTKB|B4F6W9	2056	trip12 "E3 ubiquitin-protein l	0.403	0.037	0.545	3.5e-26

UNIPROTKB|E1BZV7 TRIP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+KYLF +LS + S +QR FLQFVTGSPRLPVG     
Sbjct:  1916 TWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSL 1975

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1976 NPPLTIVRKTFESTENPD 1993

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1873 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1932

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1933 NPPLTIVRKTFESTENPD 1950

GO:0009790 "embryo development" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1873 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1932

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1933 NPPLTIVRKTFESTENPD 1950

GO:0006281 "DNA repair" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA;IMP;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

MGI|MGI:1309481 Trip12 "thyroid hormone receptor interactor 12" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1906 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1965

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1966 NPPLTIVRKTFESTENPD 1983

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009790 "embryo development" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

RGD|1306607 Trip12 "thyroid hormone receptor interactor 12" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1906 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1965

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1966 NPPLTIVRKTFESTENPD 1983

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0009790 "embryo development" evidence=ISO;ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO;ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO;ISS

UNIPROTKB|F6X7F9 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1861 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1920

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1921 NPPLTIVRKTFESTENPD 1938

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1874 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1933

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1934 NPPLTIVRKTFESTENPD 1951

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             +WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1892 TWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSL 1951

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  1952 NPPLTIVRKTFESTENPD 1969

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query:   112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
             SWD+KTLMECCR DHGY H+S+A+++LF VLS + + +QR FLQFVTGSPRLPVG     
Sbjct:  1976 SWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSL 2035

Query:   172 QPKAITLGLIERLTKNAD 189
              P    +      T+N D
Sbjct:  2036 NPPLTIVRKTFESTENPD 2053

GO:0005622 "intracellular" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISS

GO:0006974 "response to DNA damage stimulus" evidence=IEA;ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B4F6W9 trip12 "E3 ubiquitin-protein ligase TRIP12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 229 (85.7 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
 Identities = 42/77 (54%), Positives = 52/77 (67%)

Query:   113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
             WD+KTLMECCR DHGY H+S+A+K+LF +LS +   +QR FLQFVTGSPRLPVG      
Sbjct:  1938 WDVKTLMECCRPDHGYTHDSRAVKFLFEILSSFDKEQQRLFLQFVTGSPRLPVGGFRSLN 1997

Query:   173 PKAITLGLIERLTKNAD 189
             P    +      T+N D
Sbjct:  1998 PPLTIVRKTFEATENPD 2014

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5E870	TRIPC_MOUSE	6, ., 3, ., 2, ., -	0.525	0.4188	0.0395	yes	N/A
F1LP64	TRIPC_RAT	6, ., 3, ., 2, ., -	0.525	0.4188	0.0395	yes	N/A
E1B7Q7	TRIPC_BOVIN	6, ., 3, ., 2, ., -	0.525	0.4188	0.0401	yes	N/A
F1RCR6	TRIPC_DANRE	6, ., 3, ., 2, ., -	0.5512	0.4083	0.0384	yes	N/A
Q14669	TRIPC_HUMAN	6, ., 3, ., 2, ., -	0.525	0.4188	0.0401	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
smart00119	328	smart00119, HECTc, Domain Homologous to E6-AP Carb	3e-17
cd00078	352	cd00078, HECTc, HECT domain; C-terminal catalytic	3e-16
pfam00632	298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	5e-15
COG5021	872	COG5021, HUL4, Ubiquitin-protein ligase [Posttrans	1e-10

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAK 168
           G    D+  L        GY+ NS+ IK+ + V+  +++ E+R  LQFVTGS RLPVG  
Sbjct: 215 GSPEIDVDDLKSNTEYKGGYSANSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGF 274

Query: 169 TKCQPK 174
               PK
Sbjct: 275 AALSPK 280

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328

>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D++ L +      GY+ +S  I++ + VL  +++ E++ FLQFVTGS RLPVG
Sbjct: 238 GSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVG 295

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D++ L +    D GY+ NS  IK+ + VL  ++  E+R FL+FVTGS RLP+G
Sbjct: 184 GSPEIDVEDLKKNTEYDGGYSKNSPTIKWFWEVLEEFTQEERRKFLKFVTGSSRLPLG 241

The name HECT comes from Homologous to the E6-AP Carboxyl Terminus. Length = 298

>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 125 DHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
            HGY  +S  I + + ++S +   E+   LQFVTG+ R+P+ 
Sbjct: 767 YHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPIN 808

Length = 872

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
COG5021	872	HUL4 Ubiquitin-protein ligase [Posttranslational m	99.95
smart00119	336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	99.94
cd00078	352	HECTc HECT domain; C-terminal catalytic domain of	99.94
KOG0939|consensus	720		99.92
KOG0941|consensus	850		99.92
KOG0942|consensus	1001		99.92
PF00632	317	HECT: HECT-domain (ubiquitin-transferase); InterPr	99.9
KOG4427|consensus	1096		99.87
KOG0170|consensus	621		99.85
KOG0940|consensus	358		99.57
KOG0943|consensus	3015		98.12

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-29  Score=248.12  Aligned_cols=143  Identities=18%  Similarity=0.199  Sum_probs=121.6

Q ss_pred             eeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHHh
Q psy4370          25 SPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAV  104 (191)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~L  104 (191)
                      +++||||++|.++-.|++.+..        +..|+....+|.+|..++..+|.+.+.++.++++|+.+.++.        
T Consensus       685 VeLipnG~ni~VT~~Nk~eYV~--------~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~L--------  748 (872)
T COG5021         685 VELIPNGRNISVTNENKKEYVK--------KVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELL--------  748 (872)
T ss_pred             EEeccCCccccccchHHHHHHH--------HHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHH--------
Confidence            8899999999333333322221        455667888999999999999999999999999999887764        


Q ss_pred             hhccCCCC-cChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcce----EEEcC
Q psy4370         105 NRNWGGSS-WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPK----AITLG  179 (191)
Q Consensus       105 srlcG~~~-idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~----~~~i~  179 (191)
                        +||.++ ||++|||+||.|. ||+.++|+|.|||++|++|+.|+|++|||||||++|+|++||++|+|+    .++|+
T Consensus       749 --I~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~  825 (872)
T COG5021         749 --IGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIE  825 (872)
T ss_pred             --HCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeee
Confidence              689888 9999999999997 699999999999999999999999999999999999999999999984    55554


Q ss_pred             ----cCCCCCC
Q psy4370         180 ----LIERLTK  186 (191)
Q Consensus       180 ----~~~~l~~  186 (191)
                          ..++||+
T Consensus       826 ~~g~~~~rLP~  836 (872)
T COG5021         826 KGGTDDDRLPS  836 (872)
T ss_pred             cCCCccccCCc
Confidence                5777986

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with

Probab=99.94  E-value=3e-28  Score=216.94  Aligned_cols=145  Identities=25%  Similarity=0.298  Sum_probs=118.4

Q ss_pred             ccceeeeeccCCcccceeecCCCCCcccCCCCCchhhhh----HhhhccccccccccccchhcccCCCceeeccCchhHH
Q psy4370          20 KQRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD----EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVL   95 (191)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d----~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L   95 (191)
                      .++.-.+++|||+.+.            ++..+++.+++    +....++..++.+..++|..+.+.+.+.++++.+.++
T Consensus       149 g~~~~~eL~~~G~~~~------------Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~  216 (336)
T smart00119      149 GQVKVVELKPGGSNIP------------VTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELEL  216 (336)
T ss_pred             CCcceEecCCCCCCCc------------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHH
Confidence            3456678999998873            33333333333    3455777788888888998888777667766655443


Q ss_pred             HHHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceE
Q psy4370          96 TLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKA  175 (191)
Q Consensus        96 ~LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~  175 (191)
                                .+||.++||+++|++||+|++||++++++|+|||++|++||+++|++||+|+|||+|+|++||+.++|++
T Consensus       217 ----------licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~  286 (336)
T smart00119      217 ----------LICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKF  286 (336)
T ss_pred             ----------HhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCce
Confidence                      3699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC---cCCCCCC
Q psy4370         176 ITLG---LIERLTK  186 (191)
Q Consensus       176 ~~i~---~~~~l~~  186 (191)
                      .+..   ..++||.
T Consensus       287 ~i~~~~~~~~~LP~  300 (336)
T smart00119      287 TIRKAGSDDDRLPT  300 (336)
T ss_pred             EEEECCCCCCCCCc
Confidence            8875   4777775

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)

Probab=99.94  E-value=1.4e-27  Score=212.90  Aligned_cols=144  Identities=24%  Similarity=0.332  Sum_probs=117.4

Q ss_pred             cceeeeeccCCcccceeecCCCCCcccCCCCCchhhhhH----hhhccccccccccccchhcccCCCceeeccCchhHHH
Q psy4370          21 QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADE----IWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLT   96 (191)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~----l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~   96 (191)
                      ++.-.+++|||+++            ++|..+.+++++.    ....++..++++..++|..+.+...+.++++.+.++ 
T Consensus       168 ~~~~veL~~~G~~~------------~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~-  234 (352)
T cd00078         168 GAVTVELKPGGRDI------------PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELEL-  234 (352)
T ss_pred             CcceEecCCCCCCC------------cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHH-
Confidence            45566889999887            3444444444443    345577788888888888888777777776665443 


Q ss_pred             HHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370          97 LLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI  176 (191)
Q Consensus        97 LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~  176 (191)
                               .+||.++||+++|++|++|++||+.++++|+|||++|++||+++|++||+|+|||+|+|++||+.++|++.
T Consensus       235 ---------lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~  305 (352)
T cd00078         235 ---------LICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFT  305 (352)
T ss_pred             ---------HhCCCCCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeE
Confidence                     36999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcC---cCCCCCC
Q psy4370         177 TLG---LIERLTK  186 (191)
Q Consensus       177 ~i~---~~~~l~~  186 (191)
                      +..   ..++||.
T Consensus       306 i~~~~~~~~~LP~  318 (352)
T cd00078         306 IRRVGSPDDRLPT  318 (352)
T ss_pred             EEECCCCCCCCCc
Confidence            875   2667775

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.

>KOG0939|consensus

Probab=99.92  E-value=1.5e-26  Score=219.11  Aligned_cols=142  Identities=18%  Similarity=0.223  Sum_probs=119.0

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchhhhhH----hhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADE----IWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL   98 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~----l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL   98 (191)
                      ..+++||||-.+            .++..++.++++.    +...++.+++.+++++|.+..+...+.|+|.++.+|.  
T Consensus       531 ~~~eL~p~G~~i------------~Vt~~nK~~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELL--  596 (720)
T KOG0939|consen  531 SVVELKPGGAKI------------YVTEANKQEYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELL--  596 (720)
T ss_pred             ceeecccCCCce------------eeccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHH--
Confidence            556799999998            4555666666665    4566667777777777777777778888888887764  


Q ss_pred             HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----
Q psy4370          99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP-----  173 (191)
Q Consensus        99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p-----  173 (191)
                              +||.++||++|||+||+|. ||+..+++|+|||++|.+|++++|++|||||||||++|++||++|.+     
T Consensus       597 --------isGlpeidvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q  667 (720)
T KOG0939|consen  597 --------ISGLPEIDVDDLKANTEYL-GYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQ  667 (720)
T ss_pred             --------HcCCCcccHHHHHhhhhhh-cccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCCcccccccccCCcce
Confidence                    6999999999999999997 69999999999999999999999999999999999999999999997     


Q ss_pred             eEEEcCc---CCCCCCC
Q psy4370         174 KAITLGL---IERLTKN  187 (191)
Q Consensus       174 ~~~~i~~---~~~l~~~  187 (191)
                      +|++..+   .|+||..
T Consensus       668 ~fqi~~~~~s~d~LP~a  684 (720)
T KOG0939|consen  668 KFQIHADPGSTDRLPTA  684 (720)
T ss_pred             eEEEEeCCCCCCCCcch
Confidence            6666654   5888864

>KOG0941|consensus

Probab=99.92  E-value=5e-26  Score=218.90  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=126.1

Q ss_pred             eeeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHH
Q psy4370          24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNA  103 (191)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~  103 (191)
                      ..+++|||+.|++|-.|++.+..        .++|.+.+..|.++..++..+|..++--+.+.+++|++.+.        
T Consensus       669 ~~~L~~nG~~i~vt~~Nr~efV~--------~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~--------  732 (850)
T KOG0941|consen  669 TYELKPNGDEIPVTNENRREFVN--------LYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEK--------  732 (850)
T ss_pred             eeeccCCCcccccccccHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHH--------
Confidence            67899999999554444443322        67777899999999999999999998887777777776443        


Q ss_pred             hhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEcC-cCC
Q psy4370         104 VNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLG-LIE  182 (191)
Q Consensus       104 LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i~-~~~  182 (191)
                        .+||+.++|++.++++|+|++||+.+||+|+|||++++.|+.++|++||+|+|||+|+|++|.+.|+..+.+-+ +.+
T Consensus       733 --li~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l~~~i~~~~~~~~  810 (850)
T KOG0941|consen  733 --LICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKLKLVIQKNGPDED  810 (850)
T ss_pred             --HHhCCCccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhceEEEecCCCCcc
Confidence              36999999999999999999999999999999999999999999999999999999999999999999999887 688


Q ss_pred             CCCC
Q psy4370         183 RLTK  186 (191)
Q Consensus       183 ~l~~  186 (191)
                      +||.
T Consensus       811 ~lP~  814 (850)
T KOG0941|consen  811 RLPV  814 (850)
T ss_pred             cCcc
Confidence            8885

>KOG0942|consensus

Probab=99.92  E-value=3.7e-26  Score=221.05  Aligned_cols=147  Identities=19%  Similarity=0.217  Sum_probs=114.7

Q ss_pred             cceeeeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHH
Q psy4370          21 QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRV  100 (191)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl  100 (191)
                      +++.+.+|||||.+.++-.|+=.+.+.++.+...        -.+..+..++..++-..+.|+             .|+|
T Consensus       814 ~~~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN--------~rir~~c~AFr~Gls~II~~e-------------Wl~M  872 (1001)
T KOG0942|consen  814 ERQVVELKPNGSKIRVTNENVIEYIHLVSNYKLN--------QRIRRQCSAFRKGLSQIISPE-------------WLRM  872 (1001)
T ss_pred             cceeEEeccCCccceeechhhhhhhHHhhhhHHH--------HHHHHHHHHHhcchhhcCCHH-------------HHHh
Confidence            6778999999999977777777666655554443        222233333334444334443             5667


Q ss_pred             HHHhh---hccCCC-CcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370         101 LNAVN---RNWGGS-SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI  176 (191)
Q Consensus       101 ~~~Ls---rlcG~~-~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~  176 (191)
                      |+..+   .+.|.+ .||++|||+||+|.|||+++||+|..||+|+++|+.|+|++||+|||||+|.|+.|||+|.|+|+
T Consensus       873 F~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~Fc  952 (1001)
T KOG0942|consen  873 FNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPAFC  952 (1001)
T ss_pred             hChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCccce
Confidence            77643   245754 69999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcC---cCCCCCCCC
Q psy4370         177 TLG---LIERLTKNA  188 (191)
Q Consensus       177 ~i~---~~~~l~~~~  188 (191)
                      |..   +.+|||+-+
T Consensus       953 I~n~gsd~~RLPTAS  967 (1001)
T KOG0942|consen  953 IRNAGSDDDRLPTAS  967 (1001)
T ss_pred             eeeCCCccccCCcHH
Confidence            773   899999754

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []

Probab=99.90  E-value=1.8e-24  Score=188.69  Aligned_cols=141  Identities=23%  Similarity=0.270  Sum_probs=102.3

Q ss_pred             eeeeccCCcccceeecCCCCCcccCCCCCchhhhh----HhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370          24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD----EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR   99 (191)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d----~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr   99 (191)
                      -.+++|||+.+            +++..++..+..    ++..+++..++.+..++|..+.+...+.++++.+...    
T Consensus       131 ~~eL~~~G~~~------------~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~----  194 (317)
T PF00632_consen  131 EVELIPGGSNI------------PVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPEELER----  194 (317)
T ss_dssp             EEESSTTGGGS------------B-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHH----
T ss_pred             EeeecCCCccc------------ccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHHHHHH----
Confidence            35677777665            344444443333    3455667777778888888877765555554444222    


Q ss_pred             HHHHhhhccCCCC-cChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEc
Q psy4370         100 VLNAVNRNWGGSS-WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITL  178 (191)
Q Consensus       100 l~~~LsrlcG~~~-idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i  178 (191)
                            .+||.++ ||+++|+++++|++||+.++++|+|||++|++||+++|++||+|+||++|+|++||+.|+|++.+.
T Consensus       195 ------l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~  268 (317)
T PF00632_consen  195 ------LLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQ  268 (317)
T ss_dssp             ------HHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEE
T ss_pred             ------HhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEe
Confidence                  3699999 999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             Cc----CCCCCC
Q psy4370         179 GL----IERLTK  186 (191)
Q Consensus       179 ~~----~~~l~~  186 (191)
                      ..    .++||.
T Consensus       269 ~~~~~~~~~LP~  280 (317)
T PF00632_consen  269 FSDDSPDDRLPT  280 (317)
T ss_dssp             EESC-STTS--E
T ss_pred             ecCCCccccCce
Confidence            52    457774

Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....

>KOG4427|consensus

Probab=99.87  E-value=3.7e-23  Score=197.74  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=111.5

Q ss_pred             ceeee--eccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370          22 RVMSP--FKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR   99 (191)
Q Consensus        22 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr   99 (191)
                      |+||-  ++|||.-++++-.|+=.+.        +.+.+..++..++++..++..+|-.-.-|+.+..+.+.+       
T Consensus       883 Gkis~~eL~PgGkt~sVtneNKi~YI--------H~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~e-------  947 (1096)
T KOG4427|consen  883 GKISTIELKPGGKTISVTNENKIQYI--------HAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPE-------  947 (1096)
T ss_pred             cceeEEEeccCCcceeccccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHH-------
Confidence            55664  9999999833332222222        266677788888888888888888878887776665544       


Q ss_pred             HHHHhhh-ccC-CCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhc-CCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370         100 VLNAVNR-NWG-GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSC-YSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI  176 (191)
Q Consensus       100 l~~~Lsr-lcG-~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~-fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~  176 (191)
                          +++ +.| +.+||++|||+||.|-|||+.+|++|+|||+|++. |++|||+.||+|||.|||.|+-||+.|+|+|.
T Consensus       948 ----lq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLePpFs 1023 (1096)
T KOG4427|consen  948 ----LQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFS 1023 (1096)
T ss_pred             ----HHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCCCce
Confidence                222 345 67999999999999999999999999999999997 99999999999999999999999999999988


Q ss_pred             Ec
Q psy4370         177 TL  178 (191)
Q Consensus       177 ~i  178 (191)
                      +-
T Consensus      1024 Ir 1025 (1096)
T KOG4427|consen 1024 IR 1025 (1096)
T ss_pred             EE
Confidence            54

>KOG0170|consensus

Probab=99.85  E-value=5.7e-22  Score=183.53  Aligned_cols=123  Identities=32%  Similarity=0.420  Sum_probs=106.6

Q ss_pred             hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHHhhhccCC-CCcChhhhhcceEeCCCCCCCCHHH
Q psy4370          57 ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGG-SSWDMKTLMECCRIDHGYNHNSKAI  135 (191)
Q Consensus        57 ~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~LsrlcG~-~~idv~dlk~~t~y~~Gy~~~~~~I  135 (191)
                      +|+....||..|+.++..+|-.+..-+.+.|+.+++..-    +      +||. ++|+++.|.+|++++|||+.+||.|
T Consensus       456 Id~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~----l------lcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i  525 (621)
T KOG0170|consen  456 IDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVT----L------LCGVEEDWSMATLMEHIKADHGYTMDSPII  525 (621)
T ss_pred             HHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHH----H------hccchhhccHHHHHHhcccccCccCCCcHH
Confidence            455677888888888888888888888899998877542    2      4885 5799999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEcCcCCCCCCCCC
Q psy4370         136 KYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNAD  189 (191)
Q Consensus       136 ~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i~~~~~l~~~~~  189 (191)
                      +.|.+++..|+.+|||.||||||||+|||+|||+.|+|+++||..-.--+.+||
T Consensus       526 ~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~D  579 (621)
T KOG0170|consen  526 HDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPD  579 (621)
T ss_pred             HHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcc
Confidence            999999999999999999999999999999999999999999975443355554

>KOG0940|consensus

Probab=99.57  E-value=2.5e-15  Score=135.76  Aligned_cols=131  Identities=18%  Similarity=0.252  Sum_probs=105.7

Q ss_pred             eccCCcccceeecCCCCCcccCCCCCchhhhhHhhh---ccccccccccccchhcccCCCceeeccCchhHHHHHHHHHH
Q psy4370          27 FKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWS---DGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNA  103 (191)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~---dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~  103 (191)
                      ++|||.++            +++..+++.+++.+.+   .++..+....+.+|.+........+++..+.++        
T Consensus       184 l~p~g~~~------------~v~~~n~~~yi~~l~~r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~--------  243 (358)
T KOG0940|consen  184 LKPNGANI------------QVTEENKKEYIMLLQNRFERGIQEQLKALLQGFNELLPQSLLRIFDEMELEL--------  243 (358)
T ss_pred             ecCCCccc------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccchhhHHH--------
Confidence            77887776            3555556666666644   666666667777777777555566665554443        


Q ss_pred             hhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ceEEEcC
Q psy4370         104 VNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITLG  179 (191)
Q Consensus       104 LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~~~~i~  179 (191)
                        .+||..++|++||++++.|. +|..++++|.|||+.+.+|++++|.+.++|+||++++|..||+.|.    |+.++|.
T Consensus       244 --~~~~~~~~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie  320 (358)
T KOG0940|consen  244 --ALSGDPEIDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIE  320 (358)
T ss_pred             --HhcCCcccchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeec
Confidence              25999999999999999999 7999999999999999999999999999999999999999999998    6788887


Q ss_pred             c
Q psy4370         180 L  180 (191)
Q Consensus       180 ~  180 (191)
                      .
T Consensus       321 ~  321 (358)
T KOG0940|consen  321 K  321 (358)
T ss_pred             C
Confidence            4

>KOG0943|consensus

Probab=98.12  E-value=2.4e-06  Score=86.87  Aligned_cols=124  Identities=19%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             ceeeeeccCCcccceeecCCCCCcccCCCCCch---hhhhHhhhccccccccccccchhcccCCCce-eeccCchhHHHH
Q psy4370          22 RVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSK---RKADEIWSDGLVPLSRSPLDPYLSDTLPPSV-TITDACLPVLTL   97 (191)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~---rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v-~I~D~s~~~L~L   97 (191)
                      +.-+.+||.|-.|            +++|-+--   +|+-+.-+-|+..+..+.+..-+..++|++. .=.++..     
T Consensus      2828 a~qVeL~PNGdei------------lVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~ED----- 2890 (3015)
T KOG0943|consen 2828 AGQVELIPNGDEI------------LVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAED----- 2890 (3015)
T ss_pred             ceeEEEecCCcee------------eecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhH-----
Confidence            3556777777776            23333221   4555555555555444444444444555542 1111111     


Q ss_pred             HHHHHHhhhccCCCCcChhhhhcceEeCCCCCCC----CHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCc
Q psy4370          98 LRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHN----SKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA  167 (191)
Q Consensus        98 Lrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~----~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gG  167 (191)
                      +|+     .+||-.++++.-|.++|-+.+....+    -+.-+|||+|++.|+..+|+.+..|+|||+.||..|
T Consensus      2891 fRL-----iicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~ 2959 (3015)
T KOG0943|consen 2891 FRL-----IICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE 2959 (3015)
T ss_pred             hee-----eeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc
Confidence            112     27999999999999999775432222    246789999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
1c4z_A	358	Structure Of E6ap: Insights Into Ubiquitination Pat		3e-06

>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAK 168
           G  + D + L E    D GY  +S  I+  + ++  ++  ++R FLQF TG+ R PVG  
Sbjct: 244 GSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 303
Query: 169 TKCQ 172
            K +
Sbjct: 304 GKLK 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	1e-09
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	1e-09
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	2e-09
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	1e-08
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	2e-08
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	4e-08
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	4e-08

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D+    +     +GY  N   I++ +  +    + ++   LQFVTG+ R+P+ 
Sbjct: 279 GLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMN 336

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 114 DMKTLMECCRIDHGYNHNS----KAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAK 168
            ++ L+     +     N+    +  ++ + ++   S  E++D + F T SP LP   +
Sbjct: 5   SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEE 63

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G  + D + L E    D GY  +S  I+  + ++  ++  ++R FLQF TG+ R PVG
Sbjct: 244 GSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG 301

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D+       R+      +S  +K+ +  +  +    +   LQFVTGS R+P+ 
Sbjct: 260 GLGKIDVNDWKVNTRL-KHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQ 316

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
             Y  NSK I + +  +    +  +   LQFVTG+ RLP+G
Sbjct: 276 RHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLG 316

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
            GY  + + I++ +  +S + + ++   LQF TG+ R+PV 
Sbjct: 326 RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVN 366

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           H Y  NS  I++ +  L  +   ++  FLQFVTG+ ++P+ 
Sbjct: 300 HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQ 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
1c4z_A	358	E6AP, ubiquitin-protein ligase E3A; bilobal struct	99.96
2oni_A	392	E3 ubiquitin-protein ligase NEDD4-like protein; al	99.96
1nd7_A	374	WW domain-containing protein 1; HECT, ubiquitin, l	99.96
1zvd_A	380	SMAD ubiquitination regulatory factor 2; ubiquitin	99.95
3h1d_A	405	E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT,	99.95
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	99.95
3pt3_A	118	E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed	99.9

>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A

Probab=99.96  E-value=1.3e-30  Score=232.98  Aligned_cols=142  Identities=23%  Similarity=0.273  Sum_probs=119.5

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchh----hhhHhhhccccccccccccchhcccCCCcee-eccCchhHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKR----KADEIWSDGLVPLSRSPLDPYLSDTLPPSVT-ITDACLPVLTL   97 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~r----k~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~-I~D~s~~~L~L   97 (191)
                      .-.+++|||+.+            ++|..+++.    ..+++.+.++..++.++.++|..+.++..+. ++++.+.++. 
T Consensus       175 ~~~eL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~l-  241 (358)
T 1c4z_A          175 MMYDLKENGDKI------------PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL-  241 (358)
T ss_dssp             EEEESSTTTTTS------------BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHH-
T ss_pred             eeeecCCCCccc------------ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHH-
Confidence            456899999998            344444433    3445688889999999999999888877664 7888776543 


Q ss_pred             HHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEE
Q psy4370          98 LRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAIT  177 (191)
Q Consensus        98 Lrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~  177 (191)
                               +||.++||++||++||+|+|||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|++.+..
T Consensus       242 ---------i~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~~~I~~  312 (358)
T 1c4z_A          242 ---------ICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAK  312 (358)
T ss_dssp             ---------HHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGCCEEEE
T ss_pred             ---------hhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccceeeeec
Confidence                     59999999999999999999999999999999999999999999999999999999999999999866655


Q ss_pred             cC-cCCCCCC
Q psy4370         178 LG-LIERLTK  186 (191)
Q Consensus       178 i~-~~~~l~~  186 (191)
                      .+ +.++||+
T Consensus       313 ~~~~~~~LP~  322 (358)
T 1c4z_A          313 NGPDTERLPT  322 (358)
T ss_dssp             EEESCSCCCE
T ss_pred             CCCCCCCCeE
Confidence            54 5688885

>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A

Probab=99.96  E-value=1.9e-30  Score=234.39  Aligned_cols=142  Identities=18%  Similarity=0.226  Sum_probs=118.1

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL   98 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL   98 (191)
                      ..++++|||+.+            ++|..++++++    +++.+.++..++.++.++|..+++.+.+.++++.+.++.  
T Consensus       211 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l--  276 (392)
T 2oni_A          211 YQVDLKPNGSEI------------MVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELL--  276 (392)
T ss_dssp             EEEESSTTGGGC------------BCCTTTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHH--
T ss_pred             eEEecCCCCccC------------ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHh--
Confidence            356799999998            34444443333    446778899999999999999988888888877765542  


Q ss_pred             HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ce
Q psy4370          99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PK  174 (191)
Q Consensus        99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~  174 (191)
                              +||.++||++||++||+|+|||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|.    |+
T Consensus       277 --------icG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~  348 (392)
T 2oni_A          277 --------MCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQ  348 (392)
T ss_dssp             --------HHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEEC
T ss_pred             --------hcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccCCCC
Confidence                    599999999999999999999999999999999999999999999999999999999999999996    44


Q ss_pred             EEEcC---cCCCCCC
Q psy4370         175 AITLG---LIERLTK  186 (191)
Q Consensus       175 ~~~i~---~~~~l~~  186 (191)
                      .++|+   ..++||+
T Consensus       349 ~f~I~~~~~~~~LP~  363 (392)
T 2oni_A          349 LFTIEQWGSPEKLPR  363 (392)
T ss_dssp             CCEEEECSCTTSCCE
T ss_pred             ceEEEeCCCCCcCcE
Confidence            44443   5677875

>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A

Probab=99.96  E-value=3.9e-30  Score=230.87  Aligned_cols=141  Identities=20%  Similarity=0.227  Sum_probs=117.7

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchhh----hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRK----ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL   98 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk----~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL   98 (191)
                      .-.+++|||+++            ++|..+++.+    .+++.+.++..++.++.++|..+++++.+.++++.+.++.  
T Consensus       192 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l--  257 (374)
T 1nd7_A          192 TSHDLKLGGSNI------------LVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVM--  257 (374)
T ss_dssp             CCEESSTTGGGC------------BCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHH--
T ss_pred             eeEecCCCCcCc------------eeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHH--
Confidence            446899999998            3444444433    3456788999999999999999999888888888776543  


Q ss_pred             HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ce
Q psy4370          99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PK  174 (191)
Q Consensus        99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~  174 (191)
                              +||.++||++||++||.|+| |+.+|++|+|||+||++||+|+|++||+|||||+|+|++||++|.    |+
T Consensus       258 --------i~G~~~id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~  328 (374)
T 1nd7_A          258 --------LCGMQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQ  328 (374)
T ss_dssp             --------HHCCCCCCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEEC
T ss_pred             --------hcCCCCCCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCCC
Confidence                    59999999999999999985 999999999999999999999999999999999999999999997    33


Q ss_pred             EEEcC---cCCCCCC
Q psy4370         175 AITLG---LIERLTK  186 (191)
Q Consensus       175 ~~~i~---~~~~l~~  186 (191)
                      .++|+   ..++||+
T Consensus       329 ~f~I~~~~~~~~LP~  343 (374)
T 1nd7_A          329 KFCIEKVGKDTWLPR  343 (374)
T ss_dssp             CEEEECCSCTTSCCE
T ss_pred             ceEEEeCCCCCcCCE
Confidence            34443   4677774

>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.7e-29  Score=225.90  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=117.3

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL   98 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL   98 (191)
                      ...+++|||+++            ++|..+++.++    +++.+.++..++.++.++|..+++++.+.++++.+.++.  
T Consensus       192 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l--  257 (380)
T 1zvd_A          192 IQHELKPNGKSI------------PVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELI--  257 (380)
T ss_dssp             EEEESSTTCCCC------------CCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHH--
T ss_pred             eEEecCCCCCCC------------ccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHh--
Confidence            346799999998            34444444333    456778899999999999999999888888888776542  


Q ss_pred             HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc----e
Q psy4370          99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP----K  174 (191)
Q Consensus        99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p----~  174 (191)
                              +||.++||++||++||.|. ||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|+|    +
T Consensus       258 --------i~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~  328 (380)
T 1zvd_A          258 --------ICGLGKIDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR  328 (380)
T ss_dssp             --------HHCBSSCCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEEC
T ss_pred             --------hCCCCCCChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCC
Confidence                    5999999999999999998 79999999999999999999999999999999999999999999973    3


Q ss_pred             -EEEc---CcCCCCCC
Q psy4370         175 -AITL---GLIERLTK  186 (191)
Q Consensus       175 -~~~i---~~~~~l~~  186 (191)
                       |+|.   +..++||+
T Consensus       329 ~f~I~~~~~~~~~LP~  344 (380)
T 1zvd_A          329 LFTIHQIDACTNNLPK  344 (380)
T ss_dssp             CEEEEECCCCTTSCCE
T ss_pred             ceEEEecCCCCCCCCE
Confidence             4443   14677774

>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A

Probab=99.95  E-value=1.1e-29  Score=230.55  Aligned_cols=140  Identities=18%  Similarity=0.237  Sum_probs=117.3

Q ss_pred             eeeeccCCcccceeecCCCCCcccCCCCCchhh----hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370          24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRK----ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR   99 (191)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk----~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr   99 (191)
                      .++++|||++|            ++|..+++.+    .+++.+.++..++.++.++|..+++.+.+.++++.+.++.   
T Consensus       217 ~veL~p~G~~i------------~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~L---  281 (405)
T 3h1d_A          217 VRDLKPNGANI------------LVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELL---  281 (405)
T ss_dssp             GGGGSSCSSEE------------ECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHH---
T ss_pred             eEeecCCCCCC------------ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHH---
Confidence            46899999998            3444444433    3456788899999999999999988888888887775543   


Q ss_pred             HHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----e
Q psy4370         100 VLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP-----K  174 (191)
Q Consensus       100 l~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p-----~  174 (191)
                             +||.++||++||++||.|. ||+.+|++|+|||++|++||+++|++||+|||||+|+|++||++|+|     +
T Consensus       282 -------i~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~  353 (405)
T 3h1d_A          282 -------ISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQK  353 (405)
T ss_dssp             -------HHCCCCCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCC
T ss_pred             -------hCCCCCCCHHHHHhhCccc-CCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCce
Confidence                   5999999999999999997 79999999999999999999999999999999999999999999984     5


Q ss_pred             EEEcC---cCCCCCC
Q psy4370         175 AITLG---LIERLTK  186 (191)
Q Consensus       175 ~~~i~---~~~~l~~  186 (191)
                      |.+..   ..++||+
T Consensus       354 f~i~~~~~~~~~LP~  368 (405)
T 3h1d_A          354 FQIHRDDRSTDRLPS  368 (405)
T ss_dssp             EEEEEECSCTTSCCE
T ss_pred             EEEeeCCCCCCCCcc
Confidence            55542   4678885

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.9e-29  Score=228.11  Aligned_cols=141  Identities=19%  Similarity=0.221  Sum_probs=117.2

Q ss_pred             eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370          23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL   98 (191)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL   98 (191)
                      ...+++|||+++            ++|..+++.++    +++.+.++..++.++.++|..+++.+.+.++++.+.++.  
T Consensus       242 ~~veL~p~G~~i------------~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~L--  307 (429)
T 3olm_A          242 VTVDLKPDGRNI------------EVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELL--  307 (429)
T ss_dssp             EEEESSTTGGGS------------BCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHH--
T ss_pred             eeEeccCCCccc------------ccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHH--
Confidence            456899999998            34444444333    456788888999999999999988887888887765542  


Q ss_pred             HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----
Q psy4370          99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP-----  173 (191)
Q Consensus        99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p-----  173 (191)
                              +||.++||++||++||.|. ||+.+|++|+|||+||++||+|+|++||+|||||+|+|++||++|+|     
T Consensus       308 --------i~G~~~id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~  378 (429)
T 3olm_A          308 --------IGGIAEIDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPR  378 (429)
T ss_dssp             --------HTCBCCCCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEEC
T ss_pred             --------hcCCCCCCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCCc
Confidence                    5999999999999999997 79999999999999999999999999999999999999999999985     


Q ss_pred             eEEEcC--cCCCCCC
Q psy4370         174 KAITLG--LIERLTK  186 (191)
Q Consensus       174 ~~~~i~--~~~~l~~  186 (191)
                      +|.+..  ..++||+
T Consensus       379 ~f~I~~~~~~~~LP~  393 (429)
T 3olm_A          379 RFTIEKAGEVQQLPK  393 (429)
T ss_dssp             CEEEECCSCTTSCCE
T ss_pred             eEEEeeCCCCCCCCc
Confidence            455443  4677774

>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}

Probab=99.90  E-value=9.6e-25  Score=168.48  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             CCcChhhhhcceEeCCCCCCCC----HHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCC--CccccCcceEEEcC-cCCC
Q psy4370         111 SSWDMKTLMECCRIDHGYNHNS----KAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV--GAKTKCQPKAITLG-LIER  183 (191)
Q Consensus       111 ~~idv~dlk~~t~y~~Gy~~~~----~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~--gGf~~L~p~~~~i~-~~~~  183 (191)
                      +.|||+|||+||+|.++|+.++    ++|+|||+||++|++|+|++||+|+|||+|+|+  +||+.| |++.+.. +.++
T Consensus         2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~~~~~~   80 (118)
T 3pt3_A            2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPDDQH   80 (118)
T ss_dssp             ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEESCCTTS
T ss_pred             CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC-CcEEEECCCCCC
Confidence            5689999999999999898887    999999999999999999999999999999999  899999 6777664 6778


Q ss_pred             CCC
Q psy4370         184 LTK  186 (191)
Q Consensus       184 l~~  186 (191)
                      ||.
T Consensus        81 LP~   83 (118)
T 3pt3_A           81 LPT   83 (118)
T ss_dssp             CCE
T ss_pred             Ccc
Confidence            874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1c4za_	350	d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap)	1e-12
d1nd7a_	374	d.148.1.1 (A:) WW domain-containing protein 1, WWP	1e-09

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G  + D + L E    D GY  +S  I+  + ++  ++  ++R FLQF TG+ R PVG
Sbjct: 242 GSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG 299

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D+          H Y  NSK I + +  +    +  +   LQFVTG+ RLP+G
Sbjct: 260 GMQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLG 316

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1c4za_	350	Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s	99.93
d1nd7a_	374	WW domain-containing protein 1, WWP1 {Human (Homo	99.91

>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-27  Score=203.98  Aligned_cols=149  Identities=21%  Similarity=0.243  Sum_probs=121.2

Q ss_pred             ccccccceeeeeccCCcccceeecCCCCCcccCCCCCchhhhhH----hhhccccccccccccchhcccCCCce-eeccC
Q psy4370          16 KHMSKQRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADE----IWSDGLVPLSRSPLDPYLSDTLPPSV-TITDA   90 (191)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~----l~~dgv~p~v~~~L~~FL~~~lp~~v-~I~D~   90 (191)
                      .+...++...+++|||+.+            +++..+++++...    +..+++..++.+..++|..+..+..+ .++++
T Consensus       166 ~~~~g~~~~~eL~p~G~~~------------~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~  233 (350)
T d1c4za_         166 TDLFGNPMMYDLKENGDKI------------PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRP  233 (350)
T ss_dssp             CCTTTCCEEEESSTTTTTS------------BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSST
T ss_pred             ccCCCCeEEEEccCCCCcc------------cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCH
Confidence            3445567788999999998            3444444444443    45566777888888888888777666 46777


Q ss_pred             chhHHHHHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCcccc
Q psy4370          91 CLPVLTLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTK  170 (191)
Q Consensus        91 s~~~L~LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~  170 (191)
                      .+.++.          +||.++||+++|+++|+|.+||+.+|++|+|||+||++||+++|++||+|+|||+|+|++||+.
T Consensus       234 ~eL~~l----------i~G~~~i~~~~L~~~~~y~~g~~~~~~~i~~fw~vl~~~t~eer~~fL~F~TG~~rlP~~G~~~  303 (350)
T d1c4za_         234 EEIELL----------ICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGK  303 (350)
T ss_dssp             HHHHHH----------HHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGG
T ss_pred             HHHHHh----------hCCCCcccHHHHHhhCcccCCCCCccHHHHHHHHHHHhCCHHHHHHhhEEeCCCCCCCCCCccc
Confidence            664432          5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEcC-cCCCCCC
Q psy4370         171 CQPKAITLG-LIERLTK  186 (191)
Q Consensus       171 L~p~~~~i~-~~~~l~~  186 (191)
                      +++.+...+ +.++||.
T Consensus       304 l~~~i~~~~~~~~~LP~  320 (350)
T d1c4za_         304 LKMIIAKNGPDTERLPT  320 (350)
T ss_dssp             GCCEEEEEEESCSCCCE
T ss_pred             ceeEEEeCCCCCCCCCh
Confidence            988877765 6788884

>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-26  Score=200.53  Aligned_cols=143  Identities=19%  Similarity=0.153  Sum_probs=113.2

Q ss_pred             cceeeeeccCCcccceeecCCCCCcccCCCCCchhhhh----HhhhccccccccccccchhcccCCCceeeccCchhHHH
Q psy4370          21 QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD----EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLT   96 (191)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d----~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~   96 (191)
                      +..-.+++|||+.+            ++|..+..++++    ....+++..++.+..++|..+.+...+.++++.+.+. 
T Consensus       190 ~~~~~eL~~~G~~~------------~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~-  256 (374)
T d1nd7a_         190 KVTSHDLKLGGSNI------------LVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEV-  256 (374)
T ss_dssp             TCCCEESSTTGGGC------------BCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHH-
T ss_pred             CcceeecCCCCCcc------------cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHH-
Confidence            34456789999887            344444444444    3466777888888899999998887777777665443 


Q ss_pred             HHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc---
Q psy4370          97 LLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP---  173 (191)
Q Consensus        97 LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p---  173 (191)
                               .+||.++||+++|+++|.|. ||+.+|++|+|||++|++||+|+|++||+|+|||+|+|++||++|.+   
T Consensus       257 ---------licG~~~id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~  326 (374)
T d1nd7a_         257 ---------MLCGMQEVDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNG  326 (374)
T ss_dssp             ---------HHHCCCCCCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTE
T ss_pred             ---------hhCCCCCCCHHHHhhheeec-cCCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCcchhhhcccCC
Confidence                     25999999999999999998 79999999999999999999999999999999999999999999963   


Q ss_pred             --eEEEcC--cCCCCCC
Q psy4370         174 --KAITLG--LIERLTK  186 (191)
Q Consensus       174 --~~~~i~--~~~~l~~  186 (191)
                        ++.+..  ..++||.
T Consensus       327 ~~~~~i~~~~~~~~LP~  343 (374)
T d1nd7a_         327 PQKFCIEKVGKDTWLPR  343 (374)
T ss_dssp             ECCEEEECCSCTTSCCE
T ss_pred             CCceeeccCCCCCCCCc
Confidence              333332  4556764