Psyllid ID: psy4385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MAYGLMQSAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccEEccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEcccccccccHHHHHcccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccccccccccEEEEEEEEEEccEEEEcccEEEEEcccccccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccccccHHcEEEEEEEccccccccccccEEEEEEEEEEccccEEEEHHHccccEEEEcccccccHHHHHHHHccccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccEEEEEEEEEEcccEEccccEEEEEccccccccHHHHHHHHHHcccccEEEEEEccHcccccccccccccccccEEEEEEEEEEEccccccEEEcccccHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHHcccccccHHHHccccEEEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHccccccHHcccccccHcccccccHHHccccccEEEEccccccccc
Coil and Loop (DISEMBL)
MAYGLMQSAVIDSKRIRMVESKAidltddggvlkeiktpgvgdttpsagckvkvhytgtlldgtvfdssktrgepfefdlgkgqVIKAWDRGIatmkkdevavftckpeyaygkqgspptippdstlVFEVEMIsweaedispthdggirreileegasfstpkdganveITLKgecegkvfqegTFSFvlgegseydipENLEKALEKFKYkeksrlfvqpqhlwsgkgndklgvpsnkpatytITMNNFEKIKDTWQLNSDEKLEQGKLLKErgttyfkqdKFELACRNYkkaipyldfdggfegeqETERKKTLTACHLNAAMCLLKlkqakpakdqcdkaielepnnekaffrrgnayldlnepelaeKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFakhdtekeeeekkkePDVMKTLGEwgaeergrestnfekenpnifmldgtgdfknm
Flexible Loop (DISEMBL)
mayglmqsavidskrirmveskaidltddggvlkeiktpgvgdttpsagcKVKVHYTGTLLDGTVFDSSKTRGepfefdlgkgqvIKAWDRGIATMKKDEVAVFTCKPEyaygkqgspptiPPDSTLVFEVEMISWEaedispthdgGIRREILeegasfstpkdgaNVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVqpqhlwsgkgndklgvpsNKPATYTITMNNFEKIKDTWQLNSDEKLEQGkllkergttyfkqdkfELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIelepnnekafFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKfakhdtekeeeekkkepdvmktlgewgaeergrestnfekenpnifmldgtgdfknm
Low Complexity Region (SEG)
MAYGLMQSAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTekeeeekkkePDVMKTLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM
Disordered region (IsUnstruct)
***************IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGK**********STLVFEVEMISWEAEDI*************************ANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGK***********PATYTITMNNFEKIKDTWQLNS***L*QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE****RKKTLTACHLNAAMCLLKLKQA*******************AFFRRGNAYLDLN***********************************************************************************************************
Disordered Region (DISOPRED)
*AYG***SAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG**********KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE**IKEKQVYANM************************************************FMLDG***FK**
Disordered Region (DISEMBL)
MAYGLMQSAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE********KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKH**************VMKTLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM
Disordered Region (DISPRO)
*****MQSAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKH**************************************PNI****GT******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYGLMQSAVIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNxxxxxxxxxxxxxxxxxxxxxxxxxYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q02790	459	Peptidyl-prolyl cis-trans	yes	N/A	0.854	0.880	0.470	1e-107
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	N/A	0.854	0.880	0.472	1e-106
P30416	458	Peptidyl-prolyl cis-trans	yes	N/A	0.860	0.888	0.462	1e-105
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	N/A	0.860	0.888	0.462	1e-104
Q9VL78	439	FK506-binding protein 59	yes	N/A	0.928	1.0	0.456	1e-104
P27124	458	Peptidyl-prolyl cis-trans	yes	N/A	0.864	0.893	0.459	1e-102
Q13451	457	Peptidyl-prolyl cis-trans	no	N/A	0.904	0.936	0.437	1e-98
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.835	0.864	0.445	2e-96
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.835	0.864	0.445	3e-96
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.835	0.864	0.445	3e-96

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/404 (47%), Positives = 266/404 (65%)

Query: 24  IDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKG 83
           I    D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FDLGKG
Sbjct: 25  ISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKG 84

Query: 84  QVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
           +VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ ED++ 
Sbjct: 85  EVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTE 144

Query: 144 THDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENL 203
             DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+P  L
Sbjct: 145 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGL 204

Query: 204 EKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSD 263
           E+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W++NS+
Sbjct: 205 ERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSE 264

Query: 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
           EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    A HLN
Sbjct: 265 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 324

Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
            AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ ELA  DFQKVLQ+ P
Sbjct: 325 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYP 384

Query: 384 NNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEE 427
           NNKAA  +L   +Q++R Q  +EK++YANMF++ A+ + + + E
Sbjct: 385 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 428

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/404 (47%), Positives = 267/404 (66%)

Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 20  LEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSF 79

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 80  DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPPKIPPNATLVFEVELFEFKG 139

Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
           ED++   DGGI R I   G  ++ P +GA VE+ L+G  + +VF      F +GEG   D
Sbjct: 140 EDLTEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKDQVFDRRELRFEVGEGESMD 199

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
           +P  LEKA+++ +  E S ++++P++ +   G +K  +P N    Y I + +FEK K++W
Sbjct: 200 LPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQIPPNAELKYEIHLKSFEKAKESW 259

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
           +++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E   + +    
Sbjct: 260 EMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRL 319

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
           A HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKV
Sbjct: 320 ASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKV 379

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
           LQ+ P+NKAA  +L   +Q++R+Q  KEK++YANMF++ A+ +T
Sbjct: 380 LQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEET 423

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/413 (46%), Positives = 267/413 (64%), Gaps = 6/413 (1%)

Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 20  LEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 79

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 80  DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEFKG 139

Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
           ED++   DGGI R I   G  ++ P DGA VE+ L+G  + ++F +    F +GEG   D
Sbjct: 140 EDLTEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLFDQRELCFEVGEGESLD 199

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
           +P  LE+A+++ +  E S ++++P + +   G ++  +P +    Y + + +FEK K++W
Sbjct: 200 LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQIPPHAELRYEVRLKSFEKAKESW 259

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
           +++S EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F GE+  +      
Sbjct: 260 EMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRL 319

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
           A HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKV
Sbjct: 320 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKV 379

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKK 431
           LQ+ P+NKAA  +L   +Q+ R Q  +EK++YANMF++ A      EEE K K
Sbjct: 380 LQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLA------EEEHKVK 426

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/413 (46%), Positives = 265/413 (64%), Gaps = 6/413 (1%)

Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G  T   G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 20  LEGVDISPKQDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 79

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 80  DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 139

Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
           ED++   DGGI R I   G  ++ P DGA VE+ L+G    ++F +    F +GEG   D
Sbjct: 140 EDLTEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLFDQRELCFEVGEGESLD 199

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
           +P  LE+A+++ +  E S ++++P + +   G ++  +P +    Y + + +FEK K +W
Sbjct: 200 LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQIPPHAELRYEVHLKSFEKAKASW 259

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
           ++NS+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F GE+  +      
Sbjct: 260 EMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRL 319

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
           A HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKV
Sbjct: 320 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKV 379

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKK 431
           LQ+ P+NKAA  +L   +Q+ R Q  +EK++YANMF++ A      EEE K K
Sbjct: 380 LQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLA------EEEHKAK 426

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 271/447 (60%), Gaps = 8/447 (1%)

Query: 18  MVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFE 77
           M E   IDL+ DGGVLKEI   G G  TP +GC V +HYTG L+DGT FDSS +R EPFE
Sbjct: 1   MPEGNKIDLSGDGGVLKEILKEGTGTETPHSGCTVSLHYTGRLVDGTEFDSSLSRNEPFE 60

Query: 78  FDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           F LGKG VIKA+D G+ATMK  E    TC P YAYG  GSPP IPPD+TL+FE+EM+ W+
Sbjct: 61  FSLGKGNVIKAFDMGVATMKLGERCFLTCAPNYAYGAAGSPPAIPPDATLIFELEMLGWK 120

Query: 138 AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEY 197
            ED+SP  DG I R ILE      TP DGA V+  + G  EG+VF++    F  GEG   
Sbjct: 121 GEDLSPNQDGSIDRTILEASDKKRTPSDGAFVKAHISGSFEGRVFEDRDVEFDYGEGKAI 180

Query: 198 DIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDT 257
            I + +E ALEK    E SR+ +Q ++ +  KGN++  +P N    YT+ + +  K  + 
Sbjct: 181 GIIDGVEIALEKMNVGETSRIKIQAKYAFGAKGNEEFKIPPNATVEYTVKLVDCGKGLEE 240

Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
           W+L+ +E+L + K+ KE+GT YFK++ + LA + Y K    L            E KK  
Sbjct: 241 WKLSDEERLAEAKVYKEKGTNYFKKENWALAIKMYTKCKNILPTT----VHTNEEVKKIK 296

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
            A H N A+C  K      AK +C++ + L+ NN KA +RRG   L +NE E A +DFQK
Sbjct: 297 VATHSNIALCHQKSNDHFEAKQECNEVLALDKNNVKALYRRGQCNLTINELEDALEDFQK 356

Query: 378 VLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK 437
           V+Q++P NKAA  ++   KQKL+E K KEK++YANMF K A +D   +E E  +E DV+ 
Sbjct: 357 VIQLEPGNKAAANQVIICKQKLKESKNKEKKLYANMFTKLAAND---KETEPPRETDVLS 413

Query: 438 TLGEWGAEERGRESTNFEKENPNIFML 464
             GEW  E+  RE+     E  NI M+
Sbjct: 414 KCGEWSEEDAKREA-ELTLERDNIIMI 439

May have a role in phototransduction; inhibits or prevents Ca(2+) induced stimulation of the trpl ion channel.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/409 (45%), Positives = 269/409 (65%)

Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 20  LEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 79

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  +ATMK  E+   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 80  DLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 139

Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
           ED++   DGGI R I   G  ++ P DGA VE+ L+G  + ++F +    F +GEG   D
Sbjct: 140 EDLTDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLFDQRELRFEVGEGESLD 199

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
           +P  LEKA+++ +  E S L+++P + +   G +K  +P      Y + + +FEK K++W
Sbjct: 200 LPCGLEKAIQRMEKGEHSILYLKPSYAFGNAGKEKFQIPPYAELKYEVHLKSFEKAKESW 259

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
           +++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    
Sbjct: 260 EMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRL 319

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
           A HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKV
Sbjct: 320 ASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKV 379

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEE 427
           LQ+ P+NKAA  +L   +Q++R+Q  +EK++YANMF++ A+ + + + E
Sbjct: 380 LQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERLAEEENKAKAE 428

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score =  360 bits (924), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 274/437 (62%), Gaps = 9/437 (2%)

Query: 25  DLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
           D+T   D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F LGK
Sbjct: 24  DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGK 83

Query: 83  GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDIS 142
           GQVIKAWD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ ED+ 
Sbjct: 84  GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDL- 142

Query: 143 PTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPEN 202
              DGGI R    +G  +S P +GA VEI L+G C G++F     +F +GEG ++DIP  
Sbjct: 143 -FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIG 201

Query: 203 LEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNS 262
           ++KALEK + +E+  L++ P++ +   G  K G+  N    Y +T+ +FEK K++W++++
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
            EKLEQ  ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  L A  L
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
           N AMC LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL+++
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

Query: 383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEW 442
           P NKAA  +++  ++K +E   +++++YANMF KFA+ D  KEE  K     + K   E 
Sbjct: 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA-KEEANKA----MGKKTSEG 436

Query: 443 GAEERGRESTNFEKENP 459
              E+G +S   E+E P
Sbjct: 437 VTNEKGTDSQAMEEEKP 453

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 255/397 (64%), Gaps = 2/397 (0%)

Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F +GKGQVIKA
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGG 148
           WD G++TMKK E+    CKPEYAYG  GS P IP ++TL FEVE+++++ ED+    DGG
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNFKGEDL--LEDGG 147

Query: 149 IRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALE 208
           I R     G  +S P +GA V+I L+G C G+VF     +F +GEG ++DIP  ++KALE
Sbjct: 148 IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALE 207

Query: 209 KFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQ 268
           K + +E+  L + P++ +   G  K G+  N    Y +T+ +FEK K++W++++ EKLEQ
Sbjct: 208 KMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267

Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
             ++KE GT YFK  K+  A   Y K + +L+ + G   ++    +  L A  LN AMC 
Sbjct: 268 AAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327

Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL+++P NKAA
Sbjct: 328 LKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387

Query: 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
             ++   ++K +E   +++++YANMF KFA+ D ++E
Sbjct: 388 RLQIVVCQKKAKEHNERDRRIYANMFKKFAEQDAKEE 424

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  352 bits (904), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 255/397 (64%), Gaps = 2/397 (0%)

Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F +GKGQVIKA
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGG 148
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ ED+    DGG
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEIELLDFKGEDL--LEDGG 147

Query: 149 IRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALE 208
           I R     G  +S P +GA V+I L+G C G+VF     +F +GEG ++DIP  ++KALE
Sbjct: 148 IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALE 207

Query: 209 KFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQ 268
           K + +E+  L + P++ +   G  K G+  N    Y +T+ +FEK K++W++++ EKLEQ
Sbjct: 208 KMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267

Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
             ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  L A  LN AMC 
Sbjct: 268 AAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327

Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL+++P NKAA
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387

Query: 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
             ++   ++K +E   +++++YANMF KFA+ D ++E
Sbjct: 388 RLQIFMCQKKAKEHNERDRRIYANMFKKFAEQDAKEE 424

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 254/397 (63%), Gaps = 2/397 (0%)

Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G +V VHY G L +G  FDSS  R EPF F +GKGQVIKA
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGG 148
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FEVE++ ++ ED+    DGG
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGEDL--LEDGG 147

Query: 149 IRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALE 208
           I R     G  +S P +GA V+I L+G C G+VF     +F +GEG ++DIP  ++KALE
Sbjct: 148 IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALE 207

Query: 209 KFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQ 268
           K + +E+  L + P++ +   G  K G+  N    Y +T+ +FEK K++W++++ EKLEQ
Sbjct: 208 KMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267

Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
             ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  L A  LN AMC 
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327

Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL+++P NKAA
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387

Query: 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
             ++   ++K +E   ++++ YANMF KFA+ D ++E
Sbjct: 388 RLQIFMCQKKAKEHNERDRRTYANMFKKFAEQDAKEE 424

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
380013237	459	PREDICTED: FK506-binding protein 59-like	0.951	0.980	0.515	1e-131
66499186	459	PREDICTED: FK506-binding protein 59 [Api	0.951	0.980	0.513	1e-130
383858335	460	PREDICTED: peptidyl-prolyl cis-trans iso	0.953	0.980	0.532	1e-130
307187115	460	FK506-binding protein 4 [Camponotus flor	0.951	0.978	0.522	1e-128
350412241	459	PREDICTED: peptidyl-prolyl cis-trans iso	0.953	0.982	0.524	1e-128
340728871	459	PREDICTED: peptidyl-prolyl cis-trans iso	0.953	0.982	0.519	1e-128
270006236	454	hypothetical protein TcasGA2_TC008405 [T	0.959	1.0	0.515	1e-127
189236792	784	PREDICTED: similar to protein phosphatas	0.947	0.571	0.513	1e-126
307211368	460	FK506-binding protein 4 [Harpegnathos sa	0.953	0.980	0.517	1e-126
322797825	465	hypothetical protein SINV_08536 [Solenop	0.959	0.976	0.502	1e-125

>gi|380013237|ref|XP_003690671.1| PREDICTED: FK506-binding protein 59-like [Apis florea]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/458 (51%), Positives = 319/458 (69%), Gaps = 8/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           AID++   DGGV+KEI   G+GD  PS+G  V VHYTGTLLDGT FDSSK R EPF+F+L
Sbjct: 3   AIDISPNKDGGVMKEIIKEGIGDEIPSSGSNVTVHYTGTLLDGTKFDSSKDRNEPFQFEL 62

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
            KG VIKAWD G+ATMKK E+A+ TC PEYAYGK GSPP IPP++TL FE+EMISW+ ED
Sbjct: 63  KKGSVIKAWDIGVATMKKGEIALLTCAPEYAYGKNGSPPKIPPNATLKFEIEMISWKGED 122

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  +G I R  + +G  + TP++GA V + L G   GKVF++    F LGEG +  + 
Sbjct: 123 LSPEKNGSIERHQIIQGKDYITPQEGALVNVHLMGMYNGKVFEDRDVQFNLGEGEDCGVI 182

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +EKALE FK  EKS+L ++ ++ +   G  +  +P N    Y + + NFEK+ + W L
Sbjct: 183 EGIEKALESFKSGEKSKLIIKSKYAFKNIGKPEFDIPPNATVEYIVELKNFEKV-EVWSL 241

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
            + E+++  K+ KE+GT YFK +K+ LA + YKK    L++   FEG+ + ER   + + 
Sbjct: 242 KNHEQIDLAKMYKEKGTNYFKANKYNLAIKMYKKITSVLEYGEDFEGDLKIERNNLILSA 301

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+C LKL     AKD C++A++L P NEKA FRRG AYL L  PE+A KDFQ+VL+
Sbjct: 302 HLNLALCYLKLDHNVEAKDSCNEALKLSPQNEKALFRRGQAYLALASPEIAIKDFQEVLK 361

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM-KTL 439
           ++P N AAV+++      +++Q  KEK++YANMFDKFA+ D +KEEE+ +++PDVM   L
Sbjct: 362 VEPKNTAAVKQIGVCNNLIKKQLAKEKKLYANMFDKFAQEDKQKEEEKLREQPDVMCGAL 421

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GT +F+NM
Sbjct: 422 GEWGQEERPGGRDATAFEKENPNILMLNANGTDEFQNM 459

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66499186|ref|XP_395748.2| PREDICTED: FK506-binding protein 59 [Apis mellifera]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/458 (51%), Positives = 318/458 (69%), Gaps = 8/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           AID++   DGGV+KEI   G+GD  PS G  V VHYTGTLLDGT FDSSK R EPF+F+L
Sbjct: 3   AIDISPNKDGGVMKEIIKEGIGDEIPSPGSNVTVHYTGTLLDGTKFDSSKDRNEPFQFEL 62

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
            KG VIKAWD G+ATMKK E+A+ TC PEYAYGK GSPP IPP++TL FE+EMISW+ ED
Sbjct: 63  KKGSVIKAWDIGVATMKKGEIALLTCAPEYAYGKNGSPPKIPPNATLKFEIEMISWKGED 122

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  +G I R  + +G  + TP++GA V + L G   GK+F++    F LGEG +  + 
Sbjct: 123 LSPEKNGSIERHQIIQGKDYITPQEGALVNVHLMGMYNGKIFEDRDVQFNLGEGEDCGVI 182

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +EKALE FK  EKS+L ++ ++ +   G  +  +P N    Y + + NFEK+ + W L
Sbjct: 183 EGIEKALESFKSGEKSKLIIKSKYAFKNVGKPEFDIPPNATVEYIVELKNFEKV-EVWSL 241

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
            + E+++  K+ KE+GT YFK +K+ LA + YKK    L++   FEG+ + ER   + + 
Sbjct: 242 KNHEQIDLAKMYKEKGTNYFKANKYSLAIKMYKKITSVLEYGEDFEGDLKIERNNLILSA 301

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+C LKL     AKD C++A++L P NEKA FRRG AYL L  PE+A KDFQ+VL+
Sbjct: 302 HLNLALCYLKLDNNVEAKDSCNEALKLSPQNEKALFRRGQAYLALASPEIAIKDFQEVLK 361

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM-KTL 439
           ++P N AAV+++      +++Q  KEK++YANMFDKFA+ D +KEEE+ +++PDVM   L
Sbjct: 362 VEPKNTAAVKQIGICNNLIKKQLAKEKKLYANMFDKFAQEDKQKEEEKLREQPDVMCGAL 421

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GT +F+NM
Sbjct: 422 GEWGQEERPGGRDATAFEKENPNILMLNANGTDEFQNM 459

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858335|ref|XP_003704657.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP4-like [Megachile rotundata]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/458 (53%), Positives = 321/458 (70%), Gaps = 7/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           A+D++   DGGVLKEI   GVGD TP+ G  V VHYTGTLLDGT FDSSK R EPF+F+L
Sbjct: 3   AVDISPNKDGGVLKEIIKEGVGDETPAPGSNVIVHYTGTLLDGTKFDSSKDRNEPFKFEL 62

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
            KG VIKAWD G+ATMKK EVA+ TC PEYAYGK GSPP IPP+STL FE+EMI W+ ED
Sbjct: 63  KKGSVIKAWDIGVATMKKGEVAMLTCAPEYAYGKNGSPPKIPPNSTLKFEIEMIDWKGED 122

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  DG I R  + +G  + TP+DGA V + L G    +VF++    F LGEG +  + 
Sbjct: 123 LSPDKDGSIERFQMIQGKDYITPQDGALVNVHLTGTYNDRVFEDRDVQFSLGEGEDCGVI 182

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +EKALE FK  EKSRL ++ ++ +   G  +  +P N    Y + + +FEK  + W L
Sbjct: 183 EGVEKALESFKSGEKSRLKIKSKYAFKNVGKSEFDIPPNATVEYIVELKSFEKAVEVWSL 242

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
              EK+EQ K+ KE+GTTYFK +K+ LA + YKK   +L++   FE + +TER   L + 
Sbjct: 243 QPQEKIEQAKIFKEKGTTYFKANKYTLAIKMYKKVTSFLEYGDDFEADLKTERNNLLLSS 302

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+C LK+ Q   AKD C++A++L P NEKA FRRG AYL L  PE+A KDFQ+V++
Sbjct: 303 HLNLALCHLKIDQNVEAKDACNEALKLSPQNEKALFRRGQAYLALASPEIAIKDFQEVIK 362

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK-TL 439
           I+P N AAV+++      +++Q  KEK++YANMFDKFA+ D +KEEE+ +++PDVM+  L
Sbjct: 363 IEPKNTAAVKQIGVCNNLIKKQLAKEKKLYANMFDKFAQEDKQKEEEKLREQPDVMRGAL 422

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GTG+F+NM
Sbjct: 423 GEWGQEERPGGRDATAFEKENPNILMLNANGTGEFQNM 460

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187115|gb|EFN72359.1| FK506-binding protein 4 [Camponotus floridanus]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/457 (52%), Positives = 310/457 (67%), Gaps = 7/457 (1%)

Query: 24  IDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLG 81
           IDL+   D GVLKEI   G GD TP+ GCKVKVHYTGTLLDGT FDSSK R +PF+FDLG
Sbjct: 4   IDLSPAKDKGVLKEIIKEGEGDETPTTGCKVKVHYTGTLLDGTKFDSSKDRDKPFKFDLG 63

Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDI 141
           +G VIKAWD GIA+MKK EVA+ TC PEYAYGK GSPP+IPPD+TL FEVE++ W+ ED+
Sbjct: 64  RGSVIKAWDIGIASMKKGEVAILTCAPEYAYGKDGSPPSIPPDATLKFEVELLDWQGEDL 123

Query: 142 SPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPE 201
           SP  D  I R  +  G  ++ P+DGA V I L G+  G+VF+E    F LGEG    I E
Sbjct: 124 SPNKDKSIERFQIVAGKPYANPEDGAQVNIHLVGKYNGQVFEERDVEFTLGEGEVVGIVE 183

Query: 202 NLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLN 261
            +E AL++F   EKSRL ++ ++ +  +GN +  +P N    Y + + +FEK    W + 
Sbjct: 184 GVEIALQRFLNGEKSRLLIKSKYAFKEQGNAEFNIPPNADVEYEVELKSFEKETGIWSMK 243

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
             EK+EQ K+ KE+GT YF  DK  LA + Y+K   YL+    FE +   ER       H
Sbjct: 244 PIEKIEQAKIQKEKGTKYFTSDKINLAIKVYQKVFKYLETKSDFEDDLAKERDNLALTTH 303

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           LN A+C LK  +    K+QC KA+EL+P NEKA FRRG A+L L  PE A  DFQ+VL++
Sbjct: 304 LNLALCYLKTDENLLVKEQCTKALELDPENEKALFRRGQAHLKLASPEDAIIDFQQVLKV 363

Query: 382 DPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK-TLG 440
            P N AA ++++     +++Q  KEK++YANMFDKFA+ D +KEE++ K++PDVM  TLG
Sbjct: 364 QPKNTAASKQISVCNYLIKKQLAKEKKLYANMFDKFAQEDKQKEEQKLKEQPDVMHGTLG 423

Query: 441 EWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           EWG EER  GR++T FEKENPNI ML  +G+G+FKNM
Sbjct: 424 EWGQEERPGGRDATAFEKENPNILMLNANGSGEFKNM 460

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412241|ref|XP_003489581.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP4-like [Bombus impatiens]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/458 (52%), Positives = 319/458 (69%), Gaps = 7/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           AID++   DGGV KEI   G+GD TPS G  V VHYTGTL+DGT FDSSK R EPF+F+L
Sbjct: 2   AIDISPNKDGGVQKEIIKEGIGDETPSPGSNVIVHYTGTLMDGTKFDSSKDRNEPFQFEL 61

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
            KG VIKAWD G+ATMKK EVA+ TC PEYAYGK GSPP IP ++TL FE+EMI W+ ED
Sbjct: 62  KKGSVIKAWDIGVATMKKGEVALLTCAPEYAYGKNGSPPKIPSNATLKFEIEMIDWKGED 121

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  +G I R  + +G  + TP++GA V + L G   GKVF++    F LGEG +  + 
Sbjct: 122 LSPEKNGSIERYQIVQGKDYITPQEGALVNVHLTGIHNGKVFEDRDVQFSLGEGEDCGVI 181

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +EKALE FK  EKSRL ++ ++ +   G  +  +P N    YT+ + +FEK  + W L
Sbjct: 182 EGVEKALESFKSGEKSRLKIKSKYAYKNVGKPEFDIPPNATVEYTVELKSFEKAVEPWSL 241

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
           NS +++EQ K+ KE+GT YFK +K+ LA + YKK   +L ++ GFE + +TER   + + 
Sbjct: 242 NSHQQIEQAKVYKEKGTNYFKMNKYNLAIKMYKKVTSFLKYEDGFEADLKTERNNLILSA 301

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+  LK++Q   AKD C++A++L P NEKA FRRG AYL L  PE+A KDFQ+VL+
Sbjct: 302 HLNLALSYLKIEQNVEAKDACNEALKLSPQNEKALFRRGQAYLALASPEIAIKDFQEVLK 361

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM-KTL 439
           I+P N AA++++      ++ Q  KEK++YANMFDKFA+ D +KEEEE + +PDVM   L
Sbjct: 362 IEPKNTAAIKQIGVCNSLIKRQLAKEKKLYANMFDKFAQEDKQKEEEELRDQPDVMCGAL 421

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GT +F+NM
Sbjct: 422 GEWGQEERPGGRDATAFEKENPNILMLNANGTDEFQNM 459

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728871|ref|XP_003402736.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP4-like [Bombus terrestris]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/458 (51%), Positives = 320/458 (69%), Gaps = 7/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           A+D++   DGGV KEI   G+GD TPS G  V VHYTGTL+DGT FDSSK R EPF+F+L
Sbjct: 2   AVDISPNKDGGVQKEIIKEGIGDETPSPGSNVIVHYTGTLMDGTKFDSSKDRNEPFQFEL 61

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
            KG VIKAWD G+ATMKK EVA+ TC PEYAYGK GSPP IP ++TL FE+EMI W+ ED
Sbjct: 62  KKGSVIKAWDIGVATMKKGEVALLTCAPEYAYGKNGSPPKIPSNATLKFEIEMIDWKGED 121

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  +G I R  + +G  + TP++GA V + L G   GKVF++    F LGEG +  + 
Sbjct: 122 LSPEKNGSIERYQIVQGKDYITPQEGALVNVHLTGMYNGKVFEDRDVQFSLGEGEDCGVI 181

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +EKALE FK  EKS+L ++ ++ +   G  +  +P N    YT+ + +FEK  + W L
Sbjct: 182 EGVEKALESFKSGEKSKLKIKSKYAYKNVGKPEFDIPPNATVEYTVELKSFEKAVEAWSL 241

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
            S +++EQ K+ KE+GT YFK +K+ LA + YKK   +L ++ GFEG+ +TER   + + 
Sbjct: 242 KSHQQIEQAKVYKEKGTNYFKINKYNLAIKMYKKVTSFLKYEDGFEGDLKTERNNLILSA 301

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+  LK++Q   AKD C++A++L P NEKA FRRG AYL L  PE+A KDFQ+VL+
Sbjct: 302 HLNLALSYLKIEQNVEAKDACNEALKLSPQNEKALFRRGQAYLALASPEIAIKDFQEVLK 361

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM-KTL 439
           I+P N AA++++      ++ Q +KEK++YANMFDKFA+ D +KEEEE + +PDVM   L
Sbjct: 362 IEPKNTAAIKQIGVCNNLIKRQLVKEKKLYANMFDKFAQEDKQKEEEELRDQPDVMCGAL 421

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GT +F+NM
Sbjct: 422 GEWGQEERPGGRDATAFEKENPNILMLNANGTDEFQNM 459

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006236|gb|EFA02684.1| hypothetical protein TcasGA2_TC008405 [Tribolium castaneum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/456 (51%), Positives = 315/456 (69%), Gaps = 2/456 (0%)

Query: 18  MVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFE 77
           M+E   I    D GVLKEI   G  D  P  G KV+VHYTGTL DGT FDSS+ R EPFE
Sbjct: 1   MLEPIDISPNQDKGVLKEILREGTSDECPPPGSKVRVHYTGTLTDGTKFDSSRDRNEPFE 60

Query: 78  FDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           FDLGKG VIKAWD G+ATMKK E A+ TC PEYAYGK GSPPTIPPD+TL F+VE+ISW+
Sbjct: 61  FDLGKGSVIKAWDIGVATMKKGEQAMLTCAPEYAYGKSGSPPTIPPDATLKFDVEVISWK 120

Query: 138 AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEY 197
            ED+SP  DGGI R  ++ G  ++ P DGA VE+ L G+ E K F     +F +GE SE 
Sbjct: 121 CEDLSPKKDGGIERAQIKAGEGYTYPNDGATVEVHLIGKYENKEFDVRDVTFTVGEASEQ 180

Query: 198 DIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDT 257
           ++   ++ A+EKFK  E S+L ++PQ+ +  +G  +  +P N    YT+T+ NFE++K++
Sbjct: 181 NVISGIDIAIEKFKKGETSKLIIKPQYAFGTEGCSEFNIPPNATVEYTVTLKNFERVKES 240

Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
           W L++ E++EQ K+ KE+GT YFK +KF+LA + YKK I YL+     E ++E E     
Sbjct: 241 WALDTKERVEQSKIFKEKGTNYFKANKFQLAIKMYKKIIEYLESQKDPELDKEIESLN-- 298

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
            A HLN ++C LK+     AK     A++++P+N KA FRRG A L L EP+LA +DFQ+
Sbjct: 299 LAAHLNLSLCYLKIDDNFEAKASATAALKMDPDNVKALFRRGQALLKLGEPKLASEDFQQ 358

Query: 378 VLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK 437
            L++DP N AA  +     + L+EQ  KEK+V+ANMFD+FAK D ++EE+EKKKEP+VM 
Sbjct: 359 CLKLDPGNTAAQSQKALCVKTLKEQLEKEKKVFANMFDRFAKVDAQREEKEKKKEPNVMS 418

Query: 438 TLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM 473
           ++GEWG E+R RE + FEKENPNI +L G+G+FK+M
Sbjct: 419 SVGEWGKEDREREPSEFEKENPNILLLSGSGEFKDM 454

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236792|ref|XP_966417.2| PREDICTED: similar to protein phosphatase 1, catalytic subunit, beta isoform 1 [Tribolium castaneum]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/456 (51%), Positives = 313/456 (68%), Gaps = 8/456 (1%)

Query: 18  MVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFE 77
           M+E   I    D GVLKEI   G  D  P  G KV+VHYTGTL DGT FDSS+ R EPFE
Sbjct: 1   MLEPIDISPNQDKGVLKEILREGTSDECPPPGSKVRVHYTGTLTDGTKFDSSRDRNEPFE 60

Query: 78  FDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           FDLGKG VIKAWD G+ATMKK E A+ TC PEYAYGK GSPPTIPPD+TL F+VE+ISW+
Sbjct: 61  FDLGKGSVIKAWDIGVATMKKGEQAMLTCAPEYAYGKSGSPPTIPPDATLKFDVEVISWK 120

Query: 138 AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEY 197
            ED+SP  DGGI R  ++ G  ++ P DGA VE+ L G+ E K F     +F +GE SE 
Sbjct: 121 CEDLSPKKDGGIERAQIKAGEGYTYPNDGATVEVHLIGKYENKEFDVRDVTFTVGEASEQ 180

Query: 198 DIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDT 257
           ++   ++ A+EKFK  E S+L ++PQ+ +  +G  +  +P N    YT+T+ NFE++K++
Sbjct: 181 NVISGIDIAIEKFKKGETSKLIIKPQYAFGTEGCSEFNIPPNATVEYTVTLKNFERVKES 240

Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
           W L++ E++EQ K+ KE+GT YFK +KF+LA + YKK I YL        E + E +   
Sbjct: 241 WALDTKERVEQSKIFKEKGTNYFKANKFQLAIKMYKKIIEYL--------ESQKEIESLN 292

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
            A HLN ++C LK+     AK     A++++P+N KA FRRG A L L EP+LA +DFQ+
Sbjct: 293 LAAHLNLSLCYLKIDDNFEAKASATAALKMDPDNVKALFRRGQALLKLGEPKLASEDFQQ 352

Query: 378 VLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK 437
            L++DP N AA  +     + L+EQ  KEK+V+ANMFD+FAK D ++EE+EKKKEP+VM 
Sbjct: 353 CLKLDPGNTAAQSQKALCVKTLKEQLEKEKKVFANMFDRFAKVDAQREEKEKKKEPNVMS 412

Query: 438 TLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKNM 473
           ++GEWG E+R RE + FEKENPNI +L G+G+FK+M
Sbjct: 413 SVGEWGKEDREREPSEFEKENPNILLLSGSGEFKDM 448

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211368|gb|EFN87500.1| FK506-binding protein 4 [Harpegnathos saltator]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/458 (51%), Positives = 313/458 (68%), Gaps = 7/458 (1%)

Query: 23  AIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDL 80
           A+DL+   D GVLKEI   G GD TP+ GCKVKVHYTGTLLDGT FDSSK RG+PF+FDL
Sbjct: 3   AVDLSPAKDNGVLKEITQEGQGDDTPTVGCKVKVHYTGTLLDGTKFDSSKDRGKPFKFDL 62

Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
           G+G VIK WD G+A+MKK E+A  TC PEYAYGK GSPP IPPD+TL FEVE++SW  ED
Sbjct: 63  GRGSVIKGWDIGVASMKKGEIATLTCAPEYAYGKNGSPPLIPPDATLKFEVELLSWSGED 122

Query: 141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIP 200
           +SP  D  I R  +  G S++ P +GA V I L G+  G+VF++    F LGEG    I 
Sbjct: 123 LSPNKDKSIERYQIVAGKSYANPDNGAQVNIHLIGKYNGQVFEDKDIEFCLGEGEVVGIV 182

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
           E +E AL+ F   EKSRL ++ ++ +  +GN +  +P N    Y + + NFEK  + W +
Sbjct: 183 EGVEIALKHFLSGEKSRLLIKSKYAYKEQGNAEFNIPPNADVEYEVELKNFEKETEMWSM 242

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
            + EK+EQ K+ KE+ T YFK  K  LA + Y+K + YL  +  FEG+ + E+       
Sbjct: 243 KAAEKIEQAKIHKEKATNYFKSSKISLAIKVYQKVLKYLSVEADFEGDLKPEKNNLELTT 302

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           HLN A+C LK  +    K+ CDKA+EL+  NEKA FRRG A++ L  PE+A KDFQ+V++
Sbjct: 303 HLNLALCYLKTDEHLLVKESCDKALELDSQNEKALFRRGLAHIGLASPEIAVKDFQEVVK 362

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMK-TL 439
           I+P N AA +++      +++Q  KEK++YANMFDKFA+ D +KEEE+ K++PDVM  TL
Sbjct: 363 IEPKNTAASKQIFICNGLIKKQLAKEKKLYANMFDKFAQEDKQKEEEKLKEQPDVMHGTL 422

Query: 440 GEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           GEWG EER  GR++T FEKENPNI ML  +GTG+F+NM
Sbjct: 423 GEWGQEERPGGRDATAFEKENPNILMLNANGTGEFQNM 460

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797825|gb|EFZ19736.1| hypothetical protein SINV_08536 [Solenopsis invicta]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/464 (50%), Positives = 313/464 (67%), Gaps = 10/464 (2%)

Query: 17  RMVESKAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGE 74
           RM E   IDL+   D GVLKEI   G GD+TP+ GCKVKVHYTGTLLDGT FDSS+ R +
Sbjct: 5   RMAE---IDLSPAQDRGVLKEIIKEGTGDSTPTNGCKVKVHYTGTLLDGTKFDSSRDRDK 61

Query: 75  PFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           PF+F+LG G VIK WD G+A+MKK E+A+ TC PEYAYG  GS P IP D+TL FE+E++
Sbjct: 62  PFKFNLGNGSVIKGWDIGVASMKKGEIAMLTCAPEYAYGSNGSAPLIPADATLKFEIELL 121

Query: 135 SWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEG 194
            W  ED+SP +D  I R  +  G S+  P++ +NV+I L G+   +VF++    FVLGEG
Sbjct: 122 DWCGEDLSPGNDKSIERFQIVPGQSYVNPEEDSNVKIHLVGKYNDQVFEDRDVEFVLGEG 181

Query: 195 SEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI 254
               I E +E AL +F   EKSRL ++ ++ +  +GN +  +P N    Y + + NFEK 
Sbjct: 182 EVAGIVEGVEIALRRFLKGEKSRLLIKSKYAFKDQGNPQYNIPPNADVEYEVELQNFEKE 241

Query: 255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314
              W +   EK+EQ K+ K++GT YF  DK  LA + Y+K   YL+ D GFE + + E+ 
Sbjct: 242 TSVWSMKPSEKIEQAKMQKDKGTKYFLTDKLNLAIKAYQKIFKYLNADSGFEDDLKKEKD 301

Query: 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD 374
             + A HLN A+C LK  +   A+D+C KA+EL+P NEKA FRRG A L L+ PE+A  D
Sbjct: 302 SLVIAAHLNLALCYLKTNENLLARDECTKALELDPQNEKALFRRGQANLGLSSPEIAIND 361

Query: 375 FQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPD 434
           FQ+VL+  P N AA +++      +++Q  KEK++YANMFDKFA+ D +KEE++ K++PD
Sbjct: 362 FQEVLKAWPKNTAASKQILICNALIKKQLAKEKKLYANMFDKFAQEDKQKEEQKLKEQPD 421

Query: 435 VMK-TLGEWGAEER--GRESTNFEKENPNIFML--DGTGDFKNM 473
           VM  TLGEWG EER  GR++T FEKENPNI ML  +G+G+FKNM
Sbjct: 422 VMHGTLGEWGQEERPGGRDATAFEKENPNILMLNANGSGEFKNM 465

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.832	0.891	0.477	2.3e-101
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.832	0.849	0.477	2.3e-101
ZFIN|ZDB-GENE-030131-514	450	fkbp4 "FK506 binding protein 4	0.852	0.895	0.464	1.7e-100
UNIPROTKB|Q02790	459	FKBP4 "Peptidyl-prolyl cis-tra	0.845	0.871	0.470	2.1e-100
UNIPROTKB|F1SK86	456	FKBP4 "Uncharacterized protein	0.847	0.879	0.461	7.1e-100
UNIPROTKB|Q9TRY0	459	FKBP4 "Peptidyl-prolyl cis-tra	0.847	0.873	0.471	9.1e-100
UNIPROTKB|F1MU79	459	FKBP4 "Peptidyl-prolyl cis-tra	0.847	0.873	0.471	1.5e-99
UNIPROTKB|E2QWF5	459	FKBP4 "Uncharacterized protein	0.847	0.873	0.466	1.9e-99
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.845	0.873	0.462	5e-99
MGI|MGI:95543	458	Fkbp4 "FK506 binding protein 4	0.845	0.873	0.460	5.8e-98

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 189/396 (47%), Positives = 265/396 (66%)

Query:    25 DLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
             D+T   D GVLK +K  G G  +P  G KV VHYTG LLDGT FDSS  R + F FDLGK
Sbjct:    17 DITPKRDEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGK 76

Query:    83 GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDIS 142
             G+VIKAWD  +ATMK  E+   TCKPEYAYG  GSPP IPP++TL+FE+E+  ++ ED++
Sbjct:    77 GEVIKAWDIAVATMKVGEICQITCKPEYAYGLAGSPPKIPPNATLIFEIELFEFKGEDLT 136

Query:   143 PTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPEN 202
                DGGI R I ++G  +  P +GA VEI  +G    + F +    F +GEG  YD+P  
Sbjct:   137 DDEDGGIIRRIRKKGEGYLKPNEGALVEIQFEGRYRDRAFDKRELRFEIGEGDNYDLPHG 196

Query:   203 LEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNS 262
             LEKA++K +  E+S  +++P + +   G +K  +P +    Y + + +FEK K++W++N+
Sbjct:   197 LEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNT 256

Query:   263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
             +EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+ + G   E++T+ K    A HL
Sbjct:   257 EEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHL 316

Query:   323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
             N AMC LKLK+   A + C+KA+EL+ +NEK  FRRG A+L +N+ ELA  DFQKV+Q+ 
Sbjct:   317 NLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLY 376

Query:   383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418
             P+NKAA  +L   +QK+REQ  KEK++YANMF + A
Sbjct:   377 PSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLA 412

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 189/396 (47%), Positives = 265/396 (66%)

Query:    25 DLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
             D+T   D GVLK +K  G G  +P  G KV VHYTG LLDGT FDSS  R + F FDLGK
Sbjct:    17 DITPKRDEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGK 76

Query:    83 GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDIS 142
             G+VIKAWD  +ATMK  E+   TCKPEYAYG  GSPP IPP++TL+FE+E+  ++ ED++
Sbjct:    77 GEVIKAWDIAVATMKVGEICQITCKPEYAYGLAGSPPKIPPNATLIFEIELFEFKGEDLT 136

Query:   143 PTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPEN 202
                DGGI R I ++G  +  P +GA VEI  +G    + F +    F +GEG  YD+P  
Sbjct:   137 DDEDGGIIRRIRKKGEGYLKPNEGALVEIQFEGRYRDRAFDKRELRFEIGEGDNYDLPHG 196

Query:   203 LEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNS 262
             LEKA++K +  E+S  +++P + +   G +K  +P +    Y + + +FEK K++W++N+
Sbjct:   197 LEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNT 256

Query:   263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
             +EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+ + G   E++T+ K    A HL
Sbjct:   257 EEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHL 316

Query:   323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
             N AMC LKLK+   A + C+KA+EL+ +NEK  FRRG A+L +N+ ELA  DFQKV+Q+ 
Sbjct:   317 NLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLY 376

Query:   383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA 418
             P+NKAA  +L   +QK+REQ  KEK++YANMF + A
Sbjct:   377 PSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLA 412

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

ZFIN|ZDB-GENE-030131-514 fkbp4 "FK506 binding protein 4" [Danio rerio (taxid:7955)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 187/403 (46%), Positives = 269/403 (66%)

Query:    19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
             +E + I    DGGVLK +K  G G   P  G KV VHY GTLLDG+ FDSS+ RGE F F
Sbjct:    15 IEGEDITPKKDGGVLKLVKKEGTGTELPMIGDKVFVHYVGTLLDGSQFDSSRDRGEKFSF 74

Query:    79 DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
             +LGKGQVIKAWD G+ATMK  E+   TCKPEYAYG  GSPP IPP++TL+F+VE+  +  
Sbjct:    75 ELGKGQVIKAWDIGVATMKIGEICRLTCKPEYAYGAAGSPPKIPPNATLLFQVELFDFRG 134

Query:   139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
             EDI+   DGGI R I+ +G  ++ P +GA VE+ L+G  E +VF E    F +G+G    
Sbjct:   135 EDITDDEDGGITRRIITKGEGYTKPNEGATVEVWLEGSHEDRVFDERELKFEVGDGENLG 194

Query:   199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
             +P  +EKAL+  +  E++   ++P++ +   G++K  +P N    Y I M  FEK K++W
Sbjct:   195 LPLGVEKALQAMEQGEEALFTIKPKYGFGTAGSEKYNIPPNATLQYKIKMKAFEKAKESW 254

Query:   259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
             ++N+ EKLEQ  ++KE+GT YFK+ K++ A   YK+ + +L+ +   + + E + K    
Sbjct:   255 EMNTIEKLEQSVIVKEKGTQYFKEGKYKQAIVQYKRIVSWLEHESSMQPDDEEKAKALRL 314

Query:   319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
             A +LN AMC LKL+ A PA + CDKA+EL+ NNEKA FRRG A + + E ++A+ DFQ+V
Sbjct:   315 AAYLNLAMCYLKLQDANPALENCDKALELDANNEKALFRRGEALVVMKEFDMAKVDFQRV 374

Query:   379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
             +++ P NKAA  +++  ++ +REQ  K+K++YANMF KFA+ D
Sbjct:   375 IELYPANKAAKSQISICQKHMREQHEKDKRLYANMFQKFAERD 417

GO:0006457 "protein folding" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

UNIPROTKB|Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Homo sapiens (taxid:9606)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 189/402 (47%), Positives = 267/402 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LE+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W+
Sbjct:   201 PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             +NS+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    A
Sbjct:   261 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ ELA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
             Q+ PNNKAA  +L   +Q++R Q  +EK++YANMF++ A+ +
Sbjct:   381 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 422

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0032767 "copper-dependent protein binding" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA;IBA

GO:0005528 "FK506 binding" evidence=IBA;TAS

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005622 "intracellular" evidence=NAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0044295 "axonal growth cone" evidence=ISS

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA;IBA

UNIPROTKB|F1SK86 FKBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 186/403 (46%), Positives = 268/403 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P DGA VE+ L+G  + ++F +    F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKDQIFDQREIRFEVGEGETMDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LEKA+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W+
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             ++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E   + +    A
Sbjct:   261 MSSEEKLEQSSIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSNEDAQKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
             Q+ P+NKAA  +L   +Q++R+Q  +EK++YANMF++ A+ ++
Sbjct:   381 QLYPSNKAAKAQLALCQQRIRKQLAREKKLYANMFERLAEEES 423

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9TRY0 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Bos taurus (taxid:9913)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 190/403 (47%), Positives = 269/403 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P +GA VE+ L+G  + +VF      F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKDQVFDRRELRFEVGEGESMDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LEKA+++ +  E S ++++P++ +   G +K  +P N    Y I + +FEK K++W+
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQIPPNAELKYEIHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             ++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E   + +    A
Sbjct:   261 MSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
             Q+ P+NKAA  +L   +Q++R+Q  KEK++YANMF++ A+ +T
Sbjct:   381 QLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEET 423

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0044295 "axonal growth cone" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

UNIPROTKB|F1MU79 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 190/403 (47%), Positives = 269/403 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGMETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P +GA VE+ L+G  + +VF      F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKDQVFDRRELRFEVGEGESMDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LEKA+++ +  E S ++++P++ +   G +K  +P N    Y I + +FEK K++W+
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQIPPNAELKYEIHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             ++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E   + +    A
Sbjct:   261 MSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
             Q+ P+NKAA  +L   +Q++R+Q  KEK++YANMF++ A+ +T
Sbjct:   381 QLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEET 423

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E2QWF5 FKBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 188/403 (46%), Positives = 267/403 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDVSPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  + TMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  +  E
Sbjct:    81 LGKGEVIKAWDIAVGTMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFRGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P +GA V++TL+G  + ++F +    F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIRTRGEGYARPNEGAIVDVTLEGYYKDQMFDQRELRFEVGEGESLDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LEKA+++ +  E S ++++P + +   G DK  +P N    Y I + +FEK K++W+
Sbjct:   201 PCGLEKAIQRMEKGEHSIVYLKPSYAFGSVGKDKFQIPPNAELKYEIHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             +NS+EKLEQ  ++KERGT YFK+ K++ A   YKK I +L+++  F  E   + +    A
Sbjct:   261 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIISWLEYESSFSNEDAQKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
             Q+ P+NKAA  +L   +Q++R+Q  +EK++YANMF++ A+ ++
Sbjct:   381 QLYPSNKAAKAQLAVCQQRIRKQLAREKKLYANMFERLAEEES 423

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 186/402 (46%), Positives = 268/402 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  +ATMK  E+   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P DGA VE+ L+G  + ++F +    F +GEG   D+
Sbjct:   141 DLTDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLFDQRELRFEVGEGESLDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LEKA+++ +  E S L+++P + +   G +K  +P      Y + + +FEK K++W+
Sbjct:   201 PCGLEKAIQRMEKGEHSILYLKPSYAFGNAGKEKFQIPPYAELKYEVHLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             ++S+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    A
Sbjct:   261 MSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
             Q+ P+NKAA  +L   +Q++R+Q  +EK++YANMF++ A+ +
Sbjct:   381 QLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERLAEEE 422

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

MGI|MGI:95543 Fkbp4 "FK506 binding protein 4" [Mus musculus (taxid:10090)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 185/402 (46%), Positives = 266/402 (66%)

Query:    22 KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
             + +D++   D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct:    21 EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 80

Query:    80 LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
             LGKG+VIKAWD  +ATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct:    81 LGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEFKGE 140

Query:   140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
             D++   DGGI R I   G  ++ P DGA VE+ L+G  + ++F +    F +GEG   D+
Sbjct:   141 DLTEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLFDQRELCFEVGEGESLDL 200

Query:   200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
             P  LE+A+++ +  E S ++++P + +   G ++  +P +    Y + + +FEK K++W+
Sbjct:   201 PCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQIPPHAELRYEVRLKSFEKAKESWE 260

Query:   260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
             ++S EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F GE+  +      A
Sbjct:   261 MSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLA 320

Query:   320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              HLN AMC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ +LA  DFQKVL
Sbjct:   321 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query:   380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
             Q+ P+NKAA  +L   +Q+ R Q  +EK++YANMF++ A+ +
Sbjct:   381 QLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAEEE 422

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005528 "FK506 binding" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IDA

GO:0006825 "copper ion transport" evidence=ISO

GO:0007566 "embryo implantation" evidence=IMP

GO:0016020 "membrane" evidence=IBA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0030521 "androgen receptor signaling pathway" evidence=IMP

GO:0030850 "prostate gland development" evidence=IMP

GO:0031072 "heat shock protein binding" evidence=ISO;IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISO

GO:0031503 "protein complex localization" evidence=IDA

GO:0032767 "copper-dependent protein binding" evidence=ISO

GO:0035259 "glucocorticoid receptor binding" evidence=IDA

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0044295 "axonal growth cone" evidence=ISO

GO:0046661 "male sex differentiation" evidence=IMP

GO:0048156 "tau protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048608 "reproductive structure development" evidence=IMP

GO:0051219 "phosphoprotein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TRY0	FKBP4_BOVIN	5, ., 2, ., 1, ., 8	0.4727	0.8541	0.8801	yes	N/A
Q4WLV6	FKB1A_ASPFU	5, ., 2, ., 1, ., 8	0.5238	0.2219	0.9375	yes	N/A
Q6CGG3	FKBP2_YARLI	5, ., 2, ., 1, ., 8	0.5142	0.2198	0.7222	yes	N/A
Q02790	FKBP4_HUMAN	5, ., 2, ., 1, ., 8	0.4702	0.8541	0.8801	yes	N/A
P27124	FKBP4_RABIT	5, ., 2, ., 1, ., 8	0.4596	0.8646	0.8930	yes	N/A
Q9VL78	FKB59_DROME	5, ., 2, ., 1, ., 8	0.4563	0.9281	1.0	yes	N/A
Q9QVC8	FKBP4_RAT	5, ., 2, ., 1, ., 8	0.4624	0.8604	0.8886	yes	N/A
P30416	FKBP4_MOUSE	5, ., 2, ., 1, ., 8	0.4624	0.8604	0.8886	yes	N/A
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.3365	0.8160	0.7005	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	473
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-39
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-36
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	1e-18
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	2e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-11
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	8e-10
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-08
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	6e-07
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	9e-07
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	5e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-06
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	9e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	1e-05
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-05
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	1e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	1e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-04
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004
TIGR03302	235	TIGR03302, OM_YfiO, outer membrane assembly lipopr	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  136 bits (346), Expect = 3e-39
 Identities = 53/94 (56%), Positives = 61/94 (64%), Gaps = 1/94 (1%)

Query: 42  GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEV 101
           G      G  V VHYTG L DGTVFDSSK RG+PFEF LG GQVI  WD G+  MK  E 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 102 AVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEMI 134
              T  PE AYG++G     IPP++TLVFEVE++
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  132 bits (333), Expect = 4e-36
 Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 30  GGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAW 89
            G+  ++   G G   P  G  V VHYTGTL+DGTVFDSS  RG+P EF LG   VI  W
Sbjct: 101 SGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGW 157

Query: 90  DRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           D G+  MK       T  PE AYG++G P  IPP+STLVFEVE++ 
Sbjct: 158 DEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 83.7 bits (207), Expect = 1e-18
 Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 46  PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFT 105
           P+   +V+VHYTG L+DGTVFDSS  RGEP EF +    VI  W   +  M        T
Sbjct: 117 PARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGWIEALTLMPVGSKWELT 174

Query: 106 CKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
              E AYG++G+  +IPP STLVFEVE++
Sbjct: 175 IPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 48/113 (42%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           G+L +++  G G+  P     V V+Y GTL+DG  FD+S TRGEP  F L    VI  W 
Sbjct: 147 GLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 203

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
            G+  +KK         PE AYGK G  P IP +STLVF+VE++     D+ P
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELL-----DVKP 250

Length = 269

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.1 bits (185), Expect = 9e-17
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 15/115 (13%)

Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
           + L   G  Y+K   ++ A   Y+KA+               E        + N A    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKAL---------------ELDPDNADAYYNLAAAYY 45

Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
           KL + + A +  +KA+EL+P+N KA++  G AY  L + E A + ++K L++DPN
Sbjct: 46  KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE-PELAEKDFQKV 378
              N    L KL     A +  +KA+EL+P+N +A++    AYL L +  E A +D +K 
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 379 LQIDP 383
           L++DP
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           LN      KL     A +  +KA+EL+P+N  A++    AY  L + E A +D++K L++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 382 DPNNKAAVQKLTQTKQKLREQK 403
           DP+N  A   L     KL + +
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYE 85

Length = 100

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 57.6 bits (140), Expect = 8e-10
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 49  GCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKP 108
           G  V +HYT  + DG V D++     P  F +G GQ+I   +  +   +  E       P
Sbjct: 6   GDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPP 65

Query: 109 EYAYG 113
           E A+G
Sbjct: 66  EDAFG 70

Length = 174

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           KA +  GNAYL L + + A + ++K L+++PNN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           +A +  GNAYL L + + A + ++K L++DPNN
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
            +  A+  L+    + AK+  DKA+E +P++  A+      Y  L E E AE  F++ L 
Sbjct: 34  RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93

Query: 381 IDPNN 385
           ++PNN
Sbjct: 94  LNPNN 98

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396
           A +  D  +EL+P    A   RG A       +LA+ D     Q DPN+      L    
Sbjct: 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174

Query: 397 QKLREQKIKEKQVYANMFDKFAKHDTE 423
             L EQK+  KQ   N+  +  K D E
Sbjct: 175 --LNEQKLDPKQAKTNLKQRAEKSDKE 199

Length = 297

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 248 MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG 307
           + ++E+  + ++    + LE    L E             A   Y++A+  L+       
Sbjct: 143 LGDYEEALELYE----KALELDPELNELAEALLALGALLEALGRYEEALELLE------- 191

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
           +             LN  +  LKL + + A +  +KA+EL+P+N +A +      L+L  
Sbjct: 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251

Query: 368 PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407
            E A +  +K L++DP+       L     +  E   K  
Sbjct: 252 YEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           +L  A+ L K   AK A++  +KA+ +EP+   A        +    P+ A + F+KVL 
Sbjct: 469 NLLGAIYLGKGDLAK-AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527

Query: 381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
           IDP N  A+  L      L  +   E++  A +      +  E E
Sbjct: 528 IDPKNLRAILALA----GLYLRTGNEEEAVAWLEKAAELNPQEIE 568

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 30/171 (17%)

Query: 236 VPSNKPATYTITM-----NNFEKIKDTWQ--LNSDEKLEQGKLLKERGTTYFKQDKFELA 288
            P++  A Y   +      N+E  ++T Q  L S  +     LL   G + ++    E A
Sbjct: 257 APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA--GASEYQLGNLEQA 314

Query: 289 ---CRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI 345
                   K  P               R+          A   L+L +   A      A+
Sbjct: 315 YQYLNQILKYAP----------NSHQARRLL--------ASIQLRLGRVDEAIATLSPAL 356

Query: 346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396
            L+P++  A    G AYL L + E A +   K  ++DP N AA  +L  +K
Sbjct: 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 17/196 (8%)

Query: 213 KEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLL 272
           K++ R   Q +    GK  +K                          L+ +E+ +    L
Sbjct: 71  KKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKL 130

Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
           KE+G   ++   F  A + Y KAI                  K     + N A C   L 
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKAIEC----------------KPDPVYYSNRAACHNALG 174

Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP-NNKAAVQK 391
             +   +    A+EL+P+  KA  RR NAY  L +   A  D      ID   N+ + Q 
Sbjct: 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234

Query: 392 LTQTKQKLREQKIKEK 407
           + +  +K  E K KE 
Sbjct: 235 VERLLKKFAESKAKEI 250

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 21/64 (32%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           L  A   L+      A    + A+   P   +A    G A L       A    +  L  
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 382 DPNN 385
           DP++
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           +A +  G AY  L + E A + ++K L++DPNN
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 233 KLGVPSNKPATY----TITMNNFEK-IKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFEL 287
            LG P N+         +    F++ + +       +     +LL  RG  Y    + EL
Sbjct: 84  SLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLEL 143

Query: 288 ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL 347
           A ++Y++A   L  D      +    K       L  A   L   +   A+   D+ +  
Sbjct: 144 AQKSYEQA---LAID-----PRSLYAK-------LGLAQLALAENRFDEARALIDEVLTA 188

Query: 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK 407
           +P N  A   +G+  L L   ELA   ++K + + PNN A +  L      +   + +E 
Sbjct: 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL--LALATILIEAGEFEEA 246

Query: 408 QVYANMFDKFAK 419
           + +A+   K A 
Sbjct: 247 EKHADALLKKAP 258

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
            L  A C   LK+ + A D    A  L+P++ + +F      L L EPE A K     ++
Sbjct: 54  WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113

Query: 381 IDPNN 385
           I   N
Sbjct: 114 ICGEN 118

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 52  VKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYA 111
           V VH+T  L DG+  +S++  G+P  F LG G + +  ++ +  +K  +   F+ +PE A
Sbjct: 11  VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAA 70

Query: 112 YGK 114
           +G 
Sbjct: 71  FGV 73

Length = 156

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.6 bits (106), Expect = 3e-05
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 11/192 (5%)

Query: 233 KLGVPSNKPATYTITMNNFEKIKDTWQ-LNSDEKLEQGKLLKERGTTYFKQDKFELACRN 291
           +L   S+      +      K+    + L   EK  + +LL               A   
Sbjct: 51  ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110

Query: 292 YKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN 351
           Y++A+  L+       +          A  L A   L +L   + A +  +KA+EL+P  
Sbjct: 111 YEEALELLE-------KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPEL 163

Query: 352 EK---AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408
            +   A    G     L   E A +  +K L+++P++ A              +  +  +
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Query: 409 VYANMFDKFAKH 420
            Y    +    +
Sbjct: 224 YYEKALELDPDN 235

Length = 291

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 29/110 (26%)

Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---------------- 385
           D  +EL+P    A+  RG A       ELA+ D     Q DPN+                
Sbjct: 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDP 181

Query: 386 KAAVQKLTQTKQKLREQ------------KIKEKQVYANMFDKFAKHDTE 423
           K A + L Q  +KL ++            KI E+ +   +    A  +TE
Sbjct: 182 KQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERL-KAGATDNTE 230

Length = 296

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402
           +N +A    GNA   L + + A + ++K L++DP+N  A   L     KL + 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD 53

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 228 GKGNDKLGV--PSNKPAT-YTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDK 284
           G G  +LG+  P +K    Y      FEK  D  +L   E +     L  RGT    + K
Sbjct: 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA----LNLRGTFKCLKGK 346

Query: 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344
              A  +  K+I               E    +T  ++  A   L+L     A++  DKA
Sbjct: 347 HLEALADLSKSI---------------ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           ++L   +   ++ R   +    E   A KD+QK + +DP+ 
Sbjct: 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           +A++  G  YL L + E A++ ++K L++DPNN
Sbjct: 2   RAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373
            +KA+EL+PNN +A++      L+L + + A +
Sbjct: 2   YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           AK   +KA+E +P+   A   R + Y  L E +LA++ ++K L + PNN
Sbjct: 54  AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102

Length = 250

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 161 STPKDGANVEITLKGECE-GKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKE 214
              K G  V +   G+ E G VF         F F LG G    +    ++ L   K  E
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSG---QVIPGWDEGLLGMKVGE 59

Query: 215 KSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITM 248
           K +L + P+  +  +G     +P N    + + +
Sbjct: 60  KRKLTIPPELAYGEEGLAGGVIPPNATLVFEVEL 93

Length = 94

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 19/65 (29%), Positives = 27/65 (41%)

Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
                L L   + A +   KA EL+P N  A  + G + L   +P  A  D +   Q+DP
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428

Query: 384 NNKAA 388
               A
Sbjct: 429 ELGRA 433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 21/147 (14%)

Query: 276 GTTYFKQDKFELACRNYKKAI--------PYLDFDGGFEGEQETER-----KKTLTACHL 322
              Y +Q   E+A  N  KA+         YL     ++   E E+     ++ LT    
Sbjct: 38  ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97

Query: 323 NAAMC------LLKLKQAKPAKDQCDKAIE--LEPNNEKAFFRRGNAYLDLNEPELAEKD 374
           N  +       L +  + + A  Q ++AIE  L P   ++    G   L   + + AEK 
Sbjct: 98  NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157

Query: 375 FQKVLQIDPNNKAAVQKLTQTKQKLRE 401
             + LQIDP    ++ +L +      +
Sbjct: 158 LTRALQIDPQRPESLLELAELYYLRGQ 184

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 32/166 (19%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT-LTACHLNAAMCLLKLKQA 334
           G  Y +Q  +  A + Y+KA+               +R  +   A  L+ A  LL     
Sbjct: 710 GDLYLRQKDYPAAIQAYRKAL---------------KRAPSSQNAIKLHRA--LLASGNT 752

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
             A    +  ++  PN+          YL   + + A K +Q V++  P+N   +  L  
Sbjct: 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW 812

Query: 395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLG 440
                 E K      YA           E+  +     P ++ TLG
Sbjct: 813 L---YLELKDPRALEYA-----------ERALKLAPNIPAILDTLG 844

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
           +A    GN Y  L + + A + ++K L++DP+N  A   L
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL 40

Length = 100

>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 21/137 (15%)

Query: 278 TYFKQDKFELACRNYKKAIPYLDF-DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP 336
             +++ K  L   +Y +AI Y +  +  +      E+ +      L+ A    K      
Sbjct: 35  ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQ------LDLAYAYYKSGDYAE 88

Query: 337 AKDQCDKAIELEPNNEK---AFFRRGNAYL--------DLNEPELAEKDFQKVLQIDPNN 385
           A    D+ I L PN+     A++ RG +          D      A + FQ++++  PN+
Sbjct: 89  AIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148

Query: 386 K---AAVQKLTQTKQKL 399
           +    A +++   + +L
Sbjct: 149 EYAPDAKKRMDYLRNRL 165

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG0543|consensus	397		100.0
KOG0545|consensus	329		100.0
KOG0544|consensus	108		99.97
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.95
KOG0543|consensus	397		99.95
KOG0549|consensus	188		99.93
KOG0549|consensus	188		99.92
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.92
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.89
KOG0552|consensus	226		99.88
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.86
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.84
KOG0553|consensus	304		99.84
KOG0544|consensus	108		99.81
KOG4234|consensus	271		99.8
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.7
KOG0548|consensus	539		99.66
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.65
KOG4648|consensus	536		99.62
KOG0547|consensus	606		99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.58
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.55
KOG0548|consensus	539		99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.52
KOG0550|consensus	486		99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
KOG0551|consensus	390		99.49
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.48
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.48
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.48
KOG4626|consensus	966		99.46
KOG4626|consensus	966		99.45
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.44
KOG0552|consensus	226		99.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.42
KOG4642|consensus	284		99.39
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.36
KOG1126|consensus	638		99.36
KOG0545|consensus	329		99.3
KOG0376|consensus	476		99.3
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.29
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
KOG0546|consensus	372		99.27
KOG1126|consensus	638		99.23
KOG0547|consensus	606		99.22
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.19
KOG1155|consensus	559		99.19
KOG0624|consensus	504		99.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.17
KOG1155|consensus	559		99.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.17
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.15
PRK15331	165	chaperone protein SicA; Provisional	99.14
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.13
PRK12370	553	invasion protein regulator; Provisional	99.13
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.12
PRK12370	553	invasion protein regulator; Provisional	99.11
KOG0553|consensus	304		99.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.09
KOG1125|consensus	579		99.08
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.07
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.07
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.05
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.05
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.03
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.02
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.01
KOG0624|consensus	504		99.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.01
PRK11189	296	lipoprotein NlpI; Provisional	99.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.0
PLN02789	320	farnesyltranstransferase	99.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.98
KOG1125|consensus	579		98.97
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.94
KOG1173|consensus	611		98.92
KOG4555|consensus	175		98.92
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.9
PF13371	73	TPR_9: Tetratricopeptide repeat	98.89
KOG1308|consensus	377		98.88
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.87
KOG0550|consensus	486		98.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.84
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.84
PLN02789	320	farnesyltranstransferase	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.82
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.79
KOG1129|consensus	478		98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.77
KOG1840|consensus	508		98.76
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.76
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.74
PRK01490	435	tig trigger factor; Provisional	98.74
KOG2076|consensus	895		98.72
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.72
KOG2003|consensus	840		98.71
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.69
KOG2002|consensus	1018		98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.65
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
KOG1128|consensus	777		98.64
KOG4162|consensus	799		98.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.6
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.59
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.58
KOG1310|consensus	758		98.58
KOG4234|consensus	271		98.55
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.51
KOG1840|consensus	508		98.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.49
PF13371	73	TPR_9: Tetratricopeptide repeat	98.46
PRK14574	822	hmsH outer membrane protein; Provisional	98.46
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.46
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	98.43
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.41
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.38
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.35
KOG1130|consensus	639		98.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.34
PRK14574	822	hmsH outer membrane protein; Provisional	98.33
KOG2002|consensus	1018		98.33
PRK10803	263	tol-pal system protein YbgF; Provisional	98.3
KOG2076|consensus	895		98.29
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.28
KOG4648|consensus	536		98.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.23
KOG4162|consensus	799		98.21
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.21
PF12688	120	TPR_5: Tetratrico peptide repeat	98.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.2
KOG3060|consensus	289		98.18
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.17
KOG1128|consensus	777		98.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.14
PF13431	34	TPR_17: Tetratricopeptide repeat	98.14
KOG1174|consensus	564		98.14
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.13
KOG1173|consensus	611		98.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.11
KOG1156|consensus	700		98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.1
PRK15331	165	chaperone protein SicA; Provisional	98.1
KOG3060|consensus	289		98.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.05
PRK11906	458	transcriptional regulator; Provisional	98.05
PF13428	44	TPR_14: Tetratricopeptide repeat	98.05
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.03
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.03
KOG4642|consensus	284		98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.02
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
KOG1129|consensus	478		97.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.94
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.89
KOG1174|consensus	564		97.88
KOG1127|consensus	1238		97.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.86
KOG2003|consensus	840		97.86
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.84
PF13512	142	TPR_18: Tetratricopeptide repeat	97.84
KOG4555|consensus	175		97.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.8
PRK11906	458	transcriptional regulator; Provisional	97.8
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.79
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.78
KOG0551|consensus	390		97.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.77
KOG4151|consensus	748		97.73
KOG1156|consensus	700		97.67
KOG1586|consensus	288		97.64
PRK10941	269	hypothetical protein; Provisional	97.63
KOG1130|consensus	639		97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.58
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.57
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.55
KOG4814|consensus	872		97.52
KOG0376|consensus	476		97.51
KOG1127|consensus	1238		97.47
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.46
KOG0495|consensus	913		97.44
KOG0495|consensus	913		97.42
KOG3785|consensus	557		97.35
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.27
KOG3364|consensus	149		97.27
KOG3824|consensus	472		97.27
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.26
KOG4507|consensus	886		97.25
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	97.22
PF13431	34	TPR_17: Tetratricopeptide repeat	97.14
KOG2796|consensus	366		97.13
PRK01490	435	tig trigger factor; Provisional	97.05
KOG3785|consensus	557		97.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.0
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.98
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.97
KOG1308|consensus	377		96.95
KOG4340|consensus	459		96.89
KOG2376|consensus	652		96.83
KOG2396|consensus	568		96.81
KOG4340|consensus	459		96.78
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.71
KOG2376|consensus	652		96.68
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.66
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.64
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.59
KOG3081|consensus	299		96.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.56
KOG2471|consensus	696		96.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.53
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.47
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.45
KOG1941|consensus	518		96.41
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.4
COG2912	269	Uncharacterized conserved protein [Function unknow	96.38
KOG2053|consensus	932		96.27
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.17
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.17
KOG1941|consensus	518		96.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.14
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	96.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.09
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.08
PRK04841	903	transcriptional regulator MalT; Provisional	95.86
KOG1915|consensus	677		95.82
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.71
KOG1585|consensus	308		95.7
KOG2796|consensus	366		95.66
KOG1585|consensus	308		95.63
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.58
KOG1915|consensus	677		95.52
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.51
PRK04841	903	transcriptional regulator MalT; Provisional	95.46
KOG1586|consensus	288		95.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.31
PLN03218	1060	maturation of RBCL 1; Provisional	95.26
PLN03218	1060	maturation of RBCL 1; Provisional	95.1
KOG2610|consensus	491		95.06
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.0
COG3947	361	Response regulator containing CheY-like receiver a	94.98
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.95
KOG3824|consensus	472		94.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.91
KOG3081|consensus	299		94.78
KOG2471|consensus	696		94.59
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.44
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.39
PLN03077	857	Protein ECB2; Provisional	94.33
PLN03077	857	Protein ECB2; Provisional	94.31
KOG1070|consensus	1710		94.07
PRK10941	269	hypothetical protein; Provisional	93.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.92
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.86
KOG1070|consensus	1710		93.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.79
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.76
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.54
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.53
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.44
KOG1310|consensus	758		93.43
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.41
KOG4507|consensus	886		93.29
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.24
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.24
KOG4814|consensus	872		93.07
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.04
KOG2610|consensus	491		92.95
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.68
KOG3364|consensus	149		92.44
KOG2053|consensus	932		92.39
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.33
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.19
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.47
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.34
KOG1550|consensus	552		91.0
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.76
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.49
KOG2300|consensus	629		90.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.35
KOG0686|consensus	466		90.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.96
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.73
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.61
KOG0530|consensus	318		89.09
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.0
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.93
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.75
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.33
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.33
KOG1550|consensus	552		88.22
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.97
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.91
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.83
KOG2300|consensus	629		87.65
KOG2047|consensus	835		87.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.36
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.08
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.99
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.03
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	84.67
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.62
KOG0529|consensus	421		84.54
KOG0530|consensus	318		84.26
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.62
KOG3617|consensus	1416		83.6
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.58
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.49
KOG2047|consensus	835		83.27
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.16
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.99
KOG2422|consensus	665		82.88
KOG1839|consensus	1236		82.74
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	82.66
KOG3617|consensus	1416		82.56
COG2912	269	Uncharacterized conserved protein [Function unknow	82.29
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.1
KOG0292|consensus	1202		81.81
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	81.79
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.55
KOG1839|consensus	1236		81.31
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.11
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.86
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.08

>KOG0543|consensus

Probab=100.00  E-value=1.2e-67  Score=496.26  Aligned_cols=365  Identities=47%  Similarity=0.820  Sum_probs=348.3

Q ss_pred             eCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCC
Q psy4385          38 TPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS  117 (473)
Q Consensus        38 ~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~  117 (473)
                      ++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++.+|+.              |+.+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999988 88999999999999999999999998              88899


Q ss_pred             CCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCC-cCCCCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcc
Q psy4385         118 PPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGAS-FSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE  196 (473)
Q Consensus       118 ~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~  196 (473)
                      ||.||++++|.|+|+|+           |++|+|+|+++|.| ..+|.++..|+|||.|.+.+.+|+++...|.++.|.+
T Consensus        66 pp~ip~~a~l~fe~el~-----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL-----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc-----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCc
Confidence            99999999999999998           78999999999999 9999999999999999997779999877788777777


Q ss_pred             cCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc-ccccccccCchhHHHhhHHHHhh
Q psy4385         197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE-KIKDTWQLNSDEKLEQGKLLKER  275 (473)
Q Consensus       197 ~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~-~~~~~~~~~~~~~~~~a~~~~~~  275 (473)
                      ..||.||+.||++|++||++.|.++|.|+||..+...+.|||++.+.|+++|.+|+ .....|.+...+++..|...++.
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~  214 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKER  214 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHh
Confidence            78999999999999999999999999999998888888999999999999999999 88899999999999999999999


Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF  355 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~  355 (473)
                      ||.+|+.|+|..|+..|++|++++++....++++..........+|+|+|.||+|+++|..|+..|+++|.++|+|+||+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Q psy4385         356 FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEE  428 (473)
Q Consensus       356 ~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~  428 (473)
                      ||+|+||+.+++|+.|+.+|++|++++|+|+.+..+|..|.++++++.++++++|++||.++...+.+.+...
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s~~  367 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKSEA  367 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccch
Confidence            9999999999999999999999999999999999999999999999999999999999999987765554443

>KOG0545|consensus

Probab=100.00  E-value=1e-33  Score=247.53  Aligned_cols=311  Identities=27%  Similarity=0.417  Sum_probs=244.7

Q ss_pred             cCCCCEEEEEEeCCCCCC-CCCCCCEEEEEEEEEec--CCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEE
Q psy4385          27 TDDGGVLKEIKTPGVGDT-TPSAGCKVKVHYTGTLL--DGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAV  103 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~-~~~~gd~V~v~y~~~~~--dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  103 (473)
                      +...||.|+|+..|+|.. -..+|..|+|||.....  .++++|+|+..|+|+.+++|...-+|-|+..|.+|+++|.+.
T Consensus         7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            456799999999999973 23689999999999885  467999999999999999999999999999999999999999


Q ss_pred             EEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEE
Q psy4385         104 FTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQ  183 (473)
Q Consensus       104 v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~  183 (473)
                      |+|.-...               +.|-  +++=.-.++.             .|   ..|.++   +.|..|.       
T Consensus        87 F~~d~~~~---------------vqYP--fvsksLRdia-------------~G---K~p~e~---~~H~Cg~-------  123 (329)
T KOG0545|consen   87 FWCDTIHT---------------VQYP--FVSKSLRDIA-------------QG---KDPTEW---HRHCCGL-------  123 (329)
T ss_pred             hhhhhhhe---------------eech--hHHHHHHHHh-------------cC---CCcchh---hhhhhhh-------
Confidence            98863221               1111  1100000110             02   233333   1122221       


Q ss_pred             eceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc----cccccc
Q psy4385         184 EGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK----IKDTWQ  259 (473)
Q Consensus       184 ~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~----~~~~~~  259 (473)
                                              ..|...        ...+|.  ..+.+ ..+..++.|.++|..++.    ..+.|.
T Consensus       124 ------------------------a~m~~~--------~glGye--dLDeL-~knPqpL~FviellqVe~P~qYq~e~Wq  168 (329)
T KOG0545|consen  124 ------------------------ANMFAY--------HGLGYE--DLDEL-QKNPQPLVFVIELLQVEAPSQYQRETWQ  168 (329)
T ss_pred             ------------------------HHHHHh--------cCCChh--hHHHH-hhCCCceEeehhhhhccCchhhcccccc
Confidence                                    111000        001111  11100 233467889998887765    468999


Q ss_pred             cCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385         260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF---DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP  336 (473)
Q Consensus       260 ~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  336 (473)
                      |+.++++.....+.+.||.+|+.|+|.+|...|..||-++..   ...+.+.+|.+++.....+++|.++|+++.++|.+
T Consensus       169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye  248 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE  248 (329)
T ss_pred             CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999988766   33456789999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA-VQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~-~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++++|+.+|..+|.|+||||+||.|+....+.++|.++|.++|+++|.-..+ ..+|..+..++.+..+.++-.|++||+
T Consensus       249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs  328 (329)
T KOG0545|consen  249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFS  328 (329)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999987654 689999999999999999999999996

>KOG0544|consensus

Probab=99.97  E-value=5e-30  Score=188.52  Aligned_cols=106  Identities=55%  Similarity=0.989  Sum_probs=103.4

Q ss_pred             CEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCC
Q psy4385          31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEY  110 (473)
Q Consensus        31 gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~  110 (473)
                      |+.+.++.+|+|...|+.||.|++||++.+.||+.||||.+++.|+.|.+|.+.+|.||++++..|.+||++++.|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68899999999987999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         111 AYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       111 ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |||..|.|..||||++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.4e-28  Score=209.02  Aligned_cols=107  Identities=51%  Similarity=0.842  Sum_probs=103.0

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      +.++|+.|++++.|.|. .|..++.|++||++++.||++||||+.++.|+.|.+|  .+|+||.+||.+|++|++++++|
T Consensus        98 ~~~sgl~y~~~~~G~G~-~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I  174 (205)
T COG0545          98 TLPSGLQYKVLKAGDGA-APKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI  174 (205)
T ss_pred             ECCCCcEEEEEeccCCC-CCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence            36789999999999997 7999999999999999999999999999999999997  89999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      ||++|||.+|.+..||||++|+|+|+|+++
T Consensus       175 P~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         175 PPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            999999999988889999999999999986

>KOG0543|consensus

Probab=99.95  E-value=1.1e-26  Score=219.47  Aligned_cols=262  Identities=31%  Similarity=0.441  Sum_probs=189.4

Q ss_pred             CCCEEEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCC-CccchhHHHHhccCCCCcEEEEEe
Q psy4385          29 DGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK-GQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        29 ~~gv~~~i~~~g~g-~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~-~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      |++|.++|+++|.| ...|..|..|+|||.+++.++ +|+++   ...+.|.+|. ..++.||+.+|..|++||.+.|+|
T Consensus        83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i  158 (397)
T KOG0543|consen   83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI  158 (397)
T ss_pred             CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence            99999999999999 558999999999999999777 77765   2347888888 479999999999999999999999


Q ss_pred             cCCCCcC-CCCCCCCCCCCCceEEEEEEEeee-eccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEEe
Q psy4385         107 KPEYAYG-KQGSPPTIPPDSTLVFEVEMISWE-AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQE  184 (473)
Q Consensus       107 ~~~~ayg-~~g~~~~ip~~~~l~~~v~l~~~~-~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~~  184 (473)
                      +|+|||| ..+++|.||||++|.|+|+|++|. ..+.++.....                                    
T Consensus       159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~------------------------------------  202 (397)
T KOG0543|consen  159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE------------------------------------  202 (397)
T ss_pred             CcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH------------------------------------
Confidence            9999999 566899999999999999999998 44443221111                                    


Q ss_pred             ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccc---cC
Q psy4385         185 GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ---LN  261 (473)
Q Consensus       185 ~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~---~~  261 (473)
                                      +.++.|-..-..|-   +.+                   ..-.|..+...|+++...+.   +.
T Consensus       203 ----------------e~l~~A~~~ke~Gn---~~f-------------------K~gk~~~A~~~Yerav~~l~~~~~~  244 (397)
T KOG0543|consen  203 ----------------ERLEAADRKKERGN---VLF-------------------KEGKFKLAKKRYERAVSFLEYRRSF  244 (397)
T ss_pred             ----------------HHHHHHHHHHHhhh---HHH-------------------hhchHHHHHHHHHHHHHHhhccccC
Confidence                            12222211110000   000                   00011222222222111111   01


Q ss_pred             chhHH-----HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385         262 SDEKL-----EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP  336 (473)
Q Consensus       262 ~~~~~-----~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  336 (473)
                      ..+..     -....+.+++.++.+.++|..|+....++|               .+++.+..+++.+|.+++.+++|+.
T Consensus       245 ~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL---------------e~~~~N~KALyRrG~A~l~~~e~~~  309 (397)
T KOG0543|consen  245 DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL---------------ELDPNNVKALYRRGQALLALGEYDL  309 (397)
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH---------------hcCCCchhHHHHHHHHHHhhccHHH
Confidence            11111     123457789999999999999999999999               7788899999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCC
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELA-EKDFQKVLQIDP  383 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~P  383 (473)
                      |+.++++|++++|+|-.+..-+..+..+..++.+. .+.|.+.+..-+
T Consensus       310 A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  310 ARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999977777777776666665544 555665555433

>KOG0549|consensus

Probab=99.93  E-value=9.2e-26  Score=189.30  Aligned_cols=111  Identities=41%  Similarity=0.730  Sum_probs=101.0

Q ss_pred             CCCCEEEEEEeC-CCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          28 DDGGVLKEIKTP-GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        28 ~~~gv~~~i~~~-g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      +++.+...+++. -.+..+.+.||.|.+||++.+.||+.|||||+++.|+.|.+|.+++|+||+.+|.+||+||++.++|
T Consensus        66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~I  145 (188)
T KOG0549|consen   66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLII  145 (188)
T ss_pred             CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEec
Confidence            345555555554 2377778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ||+++||+.|.++.||++++|+|+|||+++..
T Consensus       146 Pp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  146 PPHLGYGERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             CccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence            99999999999999999999999999999875

>KOG0549|consensus

Probab=99.92  E-value=1.3e-24  Score=182.44  Aligned_cols=169  Identities=21%  Similarity=0.378  Sum_probs=138.9

Q ss_pred             EEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeec--cCCCCCCCCceEEEEe
Q psy4385          78 FDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE--DISPTHDGGIRREILE  155 (473)
Q Consensus        78 ~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~--~~~~~~d~~i~k~i~~  155 (473)
                      |.+|.+.+++|.+.++.+|+.|+++.|++||+++||..+..    .-..+++.+.++.+...  ...+..+..+.-.+++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            35788999999999999999999999999999999965532    22346777777665431  1112233444444444


Q ss_pred             cC-CCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCC
Q psy4385         156 EG-ASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSG  228 (473)
Q Consensus       156 ~g-~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~  228 (473)
                      +- ....+...||.+++||+|.+ ||+.||++     |++|.||.++   |++||+++|..|++||++.+.|||+++||.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gq---VIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~  153 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQ---VIKGWDQGLLGMCVGEKRKLIIPPHLGYGE  153 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCc---eeccHhHHhhhhCcccceEEecCccccCcc
Confidence            42 25678889999999999988 99999983     8999999998   999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceeeeeecccccc
Q psy4385         229 KGNDKLGVPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       229 ~g~~~~~ip~~~~~~y~i~L~~~~~~  254 (473)
                      .|.+.. ||+++.+.|+++|......
T Consensus       154 ~G~~~~-IP~~A~LiFdiELv~i~~~  178 (188)
T KOG0549|consen  154 RGAPPK-IPGDAVLIFDIELVKIERG  178 (188)
T ss_pred             CCCCCC-CCCCeeEEEEEEEEEeecC
Confidence            998776 9999999999999988764

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.92  E-value=2.8e-24  Score=192.35  Aligned_cols=115  Identities=42%  Similarity=0.640  Sum_probs=106.0

Q ss_pred             hhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhcc
Q psy4385          16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIAT   95 (473)
Q Consensus        16 ~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~   95 (473)
                      +..++|+..   +++|+.|+|+++|+|. .|..||.|+|||++++.||++|++|+.++.|+.|.+|  .+++||+++|.+
T Consensus        91 ~~k~~gv~~---t~sGl~y~vi~~G~G~-~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~  164 (206)
T PRK11570         91 NAKKEGVNS---TESGLQFRVLTQGEGA-IPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTL  164 (206)
T ss_pred             hhhcCCcEE---CCCCcEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcC
Confidence            444456655   4569999999999997 7999999999999999999999999998899999995  699999999999


Q ss_pred             CCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385          96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus        96 m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |++|++++|+|||++|||+.|.++.|||+++|+|+|+|++|
T Consensus       165 M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        165 MPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            99999999999999999999999999999999999999987

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.89  E-value=1.1e-22  Score=177.61  Aligned_cols=110  Identities=25%  Similarity=0.392  Sum_probs=102.1

Q ss_pred             ecCCCCEEEEEEeC--CCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEE
Q psy4385          26 LTDDGGVLKEIKTP--GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAV  103 (473)
Q Consensus        26 ~~~~~gv~~~i~~~--g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  103 (473)
                      ..+++|++|.++..  |+|. .|+.||.|++||++++.||++|++++.. .|+.|.+|.+.+++||+++|.+|++||+++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g~-~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEGT-TPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCCC-cCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            56788999999976  6665 7999999999999999999999999864 599999999999999999999999999999


Q ss_pred             EEecCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         104 FTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       104 v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |+|||++|||..|.+..||||++|+|+|+|++|.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552|consensus

Probab=99.88  E-value=2.7e-22  Score=177.37  Aligned_cols=107  Identities=47%  Similarity=0.790  Sum_probs=101.1

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCCEEeccCCCCccEE-EEeCCCccchhHHHHhccCCCCcEEEE
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLL-DGTVFDSSKTRGEPFE-FDLGKGQVIKAWDRGIATMKKDEVAVF  104 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~-~~~g~~~~~~g~~~~l~~m~~Ge~~~v  104 (473)
                      +..+||.|+.++.|.|+ .+..|+.|.+||.+++. +|++||+++. +.|+. |.+|.+.+|+||+.+|.+|++|.+++|
T Consensus       117 tl~~Gl~y~D~~vG~G~-~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  117 TLPGGLRYEDLRVGSGP-SAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             ecCCCcEEEEEEecCCC-CCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            56899999999999998 79999999999999998 9999999975 46888 999999999999999999999999999


Q ss_pred             EecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       105 ~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      +|||++|||..|.+ .||||++|+|+|+|+.+
T Consensus       195 iIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            99999999999976 89999999999999986

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.86  E-value=3.2e-21  Score=178.93  Aligned_cols=118  Identities=39%  Similarity=0.712  Sum_probs=106.2

Q ss_pred             HhhhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHh
Q psy4385          14 KRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGI   93 (473)
Q Consensus        14 ~~~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l   93 (473)
                      ..+..++|+..   .++|++|+|+++|+|. .|..||.|+|||++++.||++|++++.++.|+.|.++  .++|||+++|
T Consensus       133 ~~~~k~~gv~~---t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL  206 (269)
T PRK10902        133 EKFAKEKGVKT---TSTGLLYKVEKEGTGE-APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGL  206 (269)
T ss_pred             HHhccCCCcEE---CCCccEEEEEeCCCCC-CCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHH
Confidence            34445556643   5779999999999997 7999999999999999999999999988899999995  5999999999


Q ss_pred             ccCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385          94 ATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus        94 ~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      .+|++|+++.|+||++++||..|.+ .||||++|+|+|+|+++..
T Consensus       207 ~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        207 KNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             hcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence            9999999999999999999999865 7999999999999999864

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.84  E-value=1.1e-20  Score=149.66  Aligned_cols=93  Identities=55%  Similarity=0.938  Sum_probs=88.1

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCC-CCC
Q psy4385          42 GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPT  120 (473)
Q Consensus        42 g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~-~~~  120 (473)
                      |+++|+.||.|+|||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++||+++|+|||+++||..+. ++.
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            5567999999999999999999999999888899999999999999999999999999999999999999999987 557


Q ss_pred             CCCCCceEEEEEEE
Q psy4385         121 IPPDSTLVFEVEMI  134 (473)
Q Consensus       121 ip~~~~l~~~v~l~  134 (473)
                      |||+++|+|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0553|consensus

Probab=99.84  E-value=1.1e-20  Score=172.21  Aligned_cols=125  Identities=32%  Similarity=0.461  Sum_probs=119.1

Q ss_pred             hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      +....|+.+|..||.+.+.++|.+|+..|.+||               +++|.++.+|.|+|.+|.++|+|+.|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI---------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI---------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            677889999999999999999999999999999               67777899999999999999999999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      ||.+||+..|+|-|+|.||+.+|+|++|++.|++||++||+|...+..|..+..++++..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999988876654

>KOG0544|consensus

Probab=99.81  E-value=1.2e-19  Score=133.84  Aligned_cols=99  Identities=21%  Similarity=0.544  Sum_probs=92.6

Q ss_pred             ceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecC
Q psy4385         149 IRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQP  222 (473)
Q Consensus       149 i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~  222 (473)
                      +.+.++..|+|...|..|++|++||+|.+ ||+.||++     |+.|.||.|.   |+.||+.++..|.+||++.+.|+|
T Consensus         3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkge---VIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGE---VIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcc---eeechhhcchhccccccceeeecc
Confidence            56889999999999999999999999999 99999983     8999999998   999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         223 QHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       223 ~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      .|+||..|. ...||||+.+.|+++|..+
T Consensus        80 d~aYG~~G~-p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGH-PGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCC-CCccCCCcEEEEEEEEEec
Confidence            999999994 4579999999999999764

>KOG4234|consensus

Probab=99.80  E-value=7.9e-19  Score=149.99  Aligned_cols=133  Identities=32%  Similarity=0.479  Sum_probs=121.6

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..++..||.+|+.|+|.+|...|..||.+++..          .......+|.|+|.|++|++.++.||..|.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST----------STEERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc----------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            46778999999999999999999999999999988863          33567889999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      |+++|.+.+|+.||+.+|.++..|++|+.+|+++++++|....++..+.++-..+....++.+
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888887766665554

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=8e-17  Score=139.01  Aligned_cols=100  Identities=22%  Similarity=0.506  Sum_probs=92.0

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      -.+++..++++.|.| ..|..+++|++||.|++ +|++||++     |+.|.+|  .   ||+||..+|..|++|++..+
T Consensus        99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~---vI~Gw~egl~~M~vG~k~~l  172 (205)
T COG0545          99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--G---VIPGWDEGLQGMKVGGKRKL  172 (205)
T ss_pred             CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--C---eeehHHHHHhhCCCCceEEE
Confidence            356789999999988 88999999999999999 99999983     8999999  2   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      +|||.++||..|.++. |||++.++|++.|.++
T Consensus       173 ~IP~~laYG~~g~~g~-Ippns~LvFeVeLl~v  204 (205)
T COG0545         173 TIPPELAYGERGVPGV-IPPNSTLVFEVELLDV  204 (205)
T ss_pred             EeCchhccCcCCCCCC-CCCCCeEEEEEEEEec
Confidence            9999999999997766 9999999999999764

>KOG0548|consensus

Probab=99.66  E-value=3.7e-16  Score=152.20  Aligned_cols=118  Identities=31%  Similarity=0.475  Sum_probs=112.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +.+...++.||.+|+.|+|..|+.+|.+||               ..+|.++.+|.|+|.||++++++..|+.+|+.+++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAI---------------kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAI---------------KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHH---------------hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            447778889999999999999999999999               77788999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++|+++++|+|.|.|+..+.+|+.|++.|+.++++||++.++...+.+|...+
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998765

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.65  E-value=5.9e-16  Score=132.75  Aligned_cols=85  Identities=26%  Similarity=0.465  Sum_probs=78.3

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.|+.|++||++++.||++|+||+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+        .+
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~--------~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV--------PS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC--------CC
Confidence            5788999999999999999999999877889999999999999999999999999999999999999998        56


Q ss_pred             CceEEEEEEEeee
Q psy4385         125 STLVFEVEMISWE  137 (473)
Q Consensus       125 ~~l~~~v~l~~~~  137 (473)
                      ..++..+....|.
T Consensus        76 ~~~v~~vp~~~f~   88 (156)
T PRK15095         76 PDLIQYFSRRDFM   88 (156)
T ss_pred             hHHEEEecHHHCC
Confidence            7778887777664

>KOG4648|consensus

Probab=99.62  E-value=7.1e-16  Score=142.11  Aligned_cols=120  Identities=34%  Similarity=0.468  Sum_probs=110.7

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ++.+..+..+++.||.||++|+|++||.+|.+++               .+.|.++..+.|+|.+|++++.|..|..+|+
T Consensus        91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~i---------------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen   91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAI---------------AVYPHNPVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhh---------------ccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence            5667788889999999999999999999999999               5566678899999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      .|+.+|...+|||.||+.|...+|...+|.++++.+|+|.|++.+....++.+..
T Consensus       156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998887777666654

>KOG0547|consensus

Probab=99.61  E-value=3.9e-15  Score=143.16  Aligned_cols=127  Identities=24%  Similarity=0.335  Sum_probs=107.9

Q ss_pred             ccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385         259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK  338 (473)
Q Consensus       259 ~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  338 (473)
                      .++.++++..|..++.+||.+|+.|+|++||.+|.+||.+++.               -+..|.|+|.||..+|+|++.+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vi  169 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVI  169 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHH
Confidence            4567888999999999999999999999999999999966654               3779999999999999999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-PNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~  400 (473)
                      ++|++||+++|+.+|||+||+.|+..+|++++|+.|+.-..-++ =+|..+--.+.+++.++.
T Consensus       170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987544333 244455445555554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=2.3e-14  Score=122.65  Aligned_cols=113  Identities=14%  Similarity=0.218  Sum_probs=105.9

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +...|..++..|+|.+|+..|++++               .++|.+..+++++|.++.++|+|++|+..|++++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLV---------------MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            5678999999999999999999999               6677789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +.+++++|.++..+|++++|+..|.+++.++|++...+..++.+...+
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988877776554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.58  E-value=1.6e-14  Score=142.26  Aligned_cols=117  Identities=27%  Similarity=0.412  Sum_probs=110.0

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+...|+.+|..++|..|+..|.+||               .++|.+..+|+++|.||+++|+|+.|+.++++|+.++|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al---------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAI---------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            457788999999999999999999999               66667788999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      +++.+|+++|.+|+.+|+|++|+..|+++++++|++..++..+..|..++..
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999877743

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2e-14  Score=122.21  Aligned_cols=87  Identities=28%  Similarity=0.388  Sum_probs=79.3

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .+..|+.|++||++++.||++||+|....+|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||+        ++
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe--------~~   73 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE--------YD   73 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC--------CC
Confidence            4788999999999999999999999775779999999999999999999999999999999999999999        67


Q ss_pred             CceEEEEEEEeeeec
Q psy4385         125 STLVFEVEMISWEAE  139 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~  139 (473)
                      ..++-.+..-.|...
T Consensus        74 ~~lvq~vp~~~F~~~   88 (174)
T COG1047          74 PDLVQRVPRDEFQGV   88 (174)
T ss_pred             hHHeEEecHHHhCcC
Confidence            788888877777653

>KOG0548|consensus

Probab=99.53  E-value=3.2e-14  Score=138.85  Aligned_cols=113  Identities=28%  Similarity=0.330  Sum_probs=107.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..++..||+.|..|+|+.|+.+|..||               .++|.+..+|.|++.||.++++|.+|+.+..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai---------------~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAI---------------MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHH---------------ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999999               6666789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      |+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999988887

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.52  E-value=2.8e-13  Score=144.14  Aligned_cols=136  Identities=26%  Similarity=0.332  Sum_probs=118.7

Q ss_pred             CCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHH
Q psy4385         235 GVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK  314 (473)
Q Consensus       235 ~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~  314 (473)
                      ..|+...+.+...+..++. ...|.++.+++...+..+++.|+.+|+.|+|.+|+..|+++|.+.+              
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--------------  158 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP--------------  158 (615)
T ss_pred             CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------
Confidence            3566666677766655543 5678999999999999999999999999999999999999995543              


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                       . ...|+|+|.||+++|+|++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|..++.+++.+..
T Consensus       159 -~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~  229 (615)
T TIGR00990       159 -D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE  229 (615)
T ss_pred             -c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence             2 4579999999999999999999999999999999999999999999999999999999999888775543

>KOG0550|consensus

Probab=99.52  E-value=5.1e-14  Score=133.12  Aligned_cols=127  Identities=26%  Similarity=0.375  Sum_probs=112.9

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .++....+++.||.+|++|+|..|...|..||.+.+.           -...++.+|.|+|.+..++|+..+|+.+|+.|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----------n~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----------NKKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----------ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            4466778899999999999999999999999988774           23457889999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      +.+||..++||.++|.||+.+++|++|+++|++|++++.+ ..++..|.++...+++.+
T Consensus       314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK  371 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999876 777777777776665433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=2.8e-13  Score=114.14  Aligned_cols=104  Identities=14%  Similarity=0.098  Sum_probs=97.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +..+.++..|..++..|+++.|.+.|+..+               .++|.+...|+|||.|+..+|+|.+|+..|.+|+.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~---------------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~   97 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLT---------------IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ   97 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            346688999999999999999999999999               77888999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      ++|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus        98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999998443

>KOG0551|consensus

Probab=99.49  E-value=1.2e-13  Score=127.30  Aligned_cols=112  Identities=28%  Similarity=0.384  Sum_probs=99.8

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .|..+++.||.||+.++|..|+..|.++|.--..+           ..+++.+|+|+|.|++.+|+|..|+.+|.+|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999543321           3467899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      +|.+.||+||-++|++.+.++++|...++..+.++-+...+..
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~  191 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE  191 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999988888766555433

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.48  E-value=3e-13  Score=121.39  Aligned_cols=99  Identities=16%  Similarity=0.354  Sum_probs=89.7

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++..+++++|.| ..|..+++|++||.|++ +|++|++.     |..|.+|.     +++||+.+|..|++|++..|.
T Consensus       101 ~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~~-----vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570        101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG-----VIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             CCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEeec-----hhhHHHHHHcCCCCCCEEEEE
Confidence            45789999999999 68999999999999999 99999973     78999863     899999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      |||.++||..+.. ..|||++.++|+++|.++
T Consensus       175 IP~~lAYG~~g~~-~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAG-ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCC-CCcCCCCeEEEEEEEEEE
Confidence            9999999999864 579999999999999764

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.48  E-value=3.3e-13  Score=106.65  Aligned_cols=87  Identities=34%  Similarity=0.596  Sum_probs=80.8

Q ss_pred             cCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCC
Q psy4385         160 FSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDK  233 (473)
Q Consensus       160 ~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~  233 (473)
                      ..+|..+++|++||.++. +|++|++.     +.+|.+|.+.   +++||+.||..|+.||++.|.+++.++||..+...
T Consensus         2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~---~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQ---VIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSS---SSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCc---cccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            357999999999999999 99999986     8999999987   99999999999999999999999999999999877


Q ss_pred             CCCCCCCCceeeeeec
Q psy4385         234 LGVPSNKPATYTITMN  249 (473)
Q Consensus       234 ~~ip~~~~~~y~i~L~  249 (473)
                      ..+|+++.+.|+++|.
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence            6799999999999873

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.48  E-value=3.4e-13  Score=118.61  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      +++.++.|+++|++++.||++|++|+. ..|+.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+        .+
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe--------~d   72 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ--------YD   72 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC--------CC
Confidence            367899999999999999999999965 579999999999999999999999999999999999999999        56


Q ss_pred             CceEEEEEEEeee
Q psy4385         125 STLVFEVEMISWE  137 (473)
Q Consensus       125 ~~l~~~v~l~~~~  137 (473)
                      ..++.+|....|.
T Consensus        73 ~~lV~~vpr~~F~   85 (196)
T PRK10737         73 ENLVQRVPKDVFM   85 (196)
T ss_pred             hHHEEEecHHHCC
Confidence            7777777776664

>KOG4626|consensus

Probab=99.46  E-value=6e-14  Score=138.34  Aligned_cols=137  Identities=21%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------------------CChhHHHHHHHHHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------------------FEGEQETERKKTLTACHLN  323 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~n  323 (473)
                      ...+..+.++.++||+|-..+.|++|+.+|.+|+.+-+....                   .......+++|....+|+|
T Consensus       246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~N  325 (966)
T KOG4626|consen  246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNN  325 (966)
T ss_pred             cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhH
Confidence            334455667777777777777777777777777732221000                   0000111344444555555


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +|+++-..|+..+|.++|++||.+.|+.+.+.+++|.+|.+.|.+++|...|.+|+++.|+...+..+|+.+++.+
T Consensus       326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555554443

>KOG4626|consensus

Probab=99.45  E-value=1.2e-13  Score=136.35  Aligned_cols=156  Identities=14%  Similarity=0.125  Sum_probs=122.3

Q ss_pred             ccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC--------------Chh-----HHH
Q psy4385         251 FEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF--------------EGE-----QET  311 (473)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~--------------~~~-----~~~  311 (473)
                      |+++...+......++..|..+-++|-.|+.+|..+.||..|++||..-+.....              .+.     ..-
T Consensus       268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            3334444444455556666677777777777777777777777777665542210              000     112


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .+.|..+.+.+|+|..+..++.++.|...|.++++..|..+.|+.++|.+|.++|++++|+.+|+.|++++|...+++.+
T Consensus       348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN  427 (966)
T ss_pred             HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4385         392 LTQTKQKLREQKIKE  406 (473)
Q Consensus       392 l~~~~~~~~~~~~~~  406 (473)
                      ++..++.+++-..+-
T Consensus       428 mGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAI  442 (966)
T ss_pred             cchHHHHhhhHHHHH
Confidence            999998887665443

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.44  E-value=8.7e-13  Score=115.43  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=88.5

Q ss_pred             CCCceEEEEecCCC-cCCCCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGAS-FSTPKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      ..++...++..+.| ...|..|+.|++||.+++ +|++|++.    |..|.+|.+.   +++||+.+|..|+.||++.|.
T Consensus        68 ~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~---vi~Gl~e~L~~Mk~Ge~~~~~  144 (177)
T TIGR03516        68 QNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQD---LFSGLRDGLKLMKEGETATFL  144 (177)
T ss_pred             CCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcc---hhHHHHHHHcCCCCCCEEEEE
Confidence            44556666665433 268999999999999998 99999874    7899999876   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      +||.++||..|.. ..||+++.+.|+++|.++.
T Consensus       145 iP~~~AYG~~g~~-~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       145 FPSHKAYGYYGDQ-NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             ECHHHcCCCCCCC-CCcCcCCcEEEEEEEEEec
Confidence            9999999998865 4699999999999998764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552|consensus

Probab=99.43  E-value=1e-12  Score=116.85  Aligned_cols=100  Identities=28%  Similarity=0.540  Sum_probs=91.2

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee--CCeEEEec----eee-EEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC--EGKVFQEG----TFS-FVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~--~g~~~~~~----~~~-~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      .++++..=++.|.| ..|..|..|.+||.|++  +|++||+.    ++. |.+|.+.   ||+||+.++.+|++|-++.+
T Consensus       119 ~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~---VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  119 PGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGE---VIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             CCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCC---CCchHHHhhhhhccCCeeEE
Confidence            46677777788886 89999999999999999  89999984    777 9999997   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      .|||.++||..+.+  .||+++.+.|+++|..+
T Consensus       195 iIPp~lgYg~~g~~--~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP--EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC--cCCCCCcEEEEEEEEec
Confidence            99999999999987  79999999999999764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.42  E-value=2.6e-12  Score=108.76  Aligned_cols=116  Identities=20%  Similarity=0.273  Sum_probs=105.1

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|++.+|+..|++++               ..+|.+..++.++|.|+++++++++|+..+++++.+
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLA---------------AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45668889999999999999999999999               556667899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      +|.++..++.+|.+|...|++++|+..|+++++++|++.........+...
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876665555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4642|consensus

Probab=99.39  E-value=8.4e-13  Score=116.45  Aligned_cols=117  Identities=29%  Similarity=0.424  Sum_probs=104.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+++.||.+|..++|..|+.+|.+||               .++|..+..|.|+|.||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI---------------~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAI---------------CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHH---------------hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            468899999999999999999999999999               77888899999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP-----NNKAAVQKLTQTKQK  398 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P-----~~~~~~~~l~~~~~~  398 (473)
                      ++|+.++++|.+|++.+....|++|+..+++|+.+--     .-..+...|..+..+
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            9999999999999999999999999999999976632     123566666666543

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.37  E-value=4.7e-12  Score=117.92  Aligned_cols=100  Identities=24%  Similarity=0.484  Sum_probs=90.0

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++..+|+++|+| ..|..++.|+|||.|++ +|++|++.     +..|.++.     +++||+.+|..|+.|++..++
T Consensus       145 ~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~~-----vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        145 STGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG-----VIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             CCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecCC-----cchHHHHHHhcCCCCcEEEEE
Confidence            56789999999999 58999999999999997 99999973     67777752     899999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      ||+.++||..+..  ++|+++.+.|+++|.++..
T Consensus       219 IP~~laYG~~g~~--gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        219 IPPELAYGKAGVP--GIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             ECchhhCCCCCCC--CCCCCCcEEEEEEEEEecc
Confidence            9999999999864  6999999999999988764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=5.5e-12  Score=121.56  Aligned_cols=128  Identities=23%  Similarity=0.314  Sum_probs=110.7

Q ss_pred             ceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHH
Q psy4385         242 ATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH  321 (473)
Q Consensus       242 ~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      ...++.+..+.+......+++.   ..+..+.++|..+...|++..|+..|++++               .++|.++.+|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al---------------~l~P~~~~a~  101 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGLRALARNDFSQAL---------------ALRPDMADAY  101 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HcCCCCHHHH
Confidence            3445555555554443333333   346789999999999999999999999999               6667789999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      +++|.++..+|+|+.|+..++++++++|++..+++++|.++...|++++|+.+|+++++++|+++.
T Consensus       102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999974

>KOG1126|consensus

Probab=99.36  E-value=2.4e-12  Score=128.78  Aligned_cols=179  Identities=18%  Similarity=0.271  Sum_probs=151.2

Q ss_pred             CcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcch
Q psy4385         199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTT  278 (473)
Q Consensus       199 ~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~  278 (473)
                      +..--+.||..|++    .+.++|.++|...-+....          +....|+++...|..+..-....-.+|+-+|..
T Consensus       433 LQkdh~~Aik~f~R----AiQldp~faYayTLlGhE~----------~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKR----AIQLDPRFAYAYTLLGHES----------IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             hhhHHHHHHHHHHH----hhccCCccchhhhhcCChh----------hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            34455778888854    4778898877765443211          223445556666666666677788999999999


Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      |.++++|+.|.-+|++|+               +++|.+..+..-+|..+.++|+.++|++.+++|+.+||.|+-..|.+
T Consensus       499 y~Kqek~e~Ae~~fqkA~---------------~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAV---------------EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             eeccchhhHHHHHHHhhh---------------cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            999999999999999999               77888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       359 g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      |.++..+++|++|+..|++.-++-|++..++..++++.+++++...+-
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence            999999999999999999999999999999999999999887655444

>KOG0545|consensus

Probab=99.30  E-value=1.7e-11  Score=108.60  Aligned_cols=232  Identities=16%  Similarity=0.210  Sum_probs=146.0

Q ss_pred             CCceEEEEecCCC-cCCCCCCCeEEEEEEeee---CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEE
Q psy4385         147 GGIRREILEEGAS-FSTPKDGANVEITLKGEC---EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSR  217 (473)
Q Consensus       147 ~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~---~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~  217 (473)
                      .+|.|+|+..|+| ...-.+|..|++||....   .++++|+     .|.++++|...   -.+.||..+.+|.++|.+.
T Consensus        10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkF---kL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen   10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKF---KLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecccc---ccHHHHHHHHHHhhhhHHH
Confidence            4688999999997 455668999999999877   3568886     38999999987   7899999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCceeeee---eccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHH
Q psy4385         218 LFVQPQHLWSGKGNDKLGVPSNKPATYTIT---MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKK  294 (473)
Q Consensus       218 ~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~---L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~  294 (473)
                      |++.....                +.|-..   |.++-..+++.... ....-.+..+...|.-|-......+--+-..-
T Consensus        87 F~~d~~~~----------------vqYPfvsksLRdia~GK~p~e~~-~H~Cg~a~m~~~~glGyedLDeL~knPqpL~F  149 (329)
T KOG0545|consen   87 FWCDTIHT----------------VQYPFVSKSLRDIAQGKDPTEWH-RHCCGLANMFAYHGLGYEDLDELQKNPQPLVF  149 (329)
T ss_pred             hhhhhhhe----------------eechhHHHHHHHHhcCCCcchhh-hhhhhhHHHHHhcCCChhhHHHHhhCCCceEe
Confidence            99875431                112111   11111111111100 00111111111222222111111000000111


Q ss_pred             HhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------------------CC
Q psy4385         295 AIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------------------EP  349 (473)
Q Consensus       295 al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------~p  349 (473)
                      .+.++....+       +.-.+.+  .-....++...|+-++++|+|.+|...|..|+..                  +.
T Consensus       150 viellqVe~P~qYq~e~Wqlsdde--Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk  227 (329)
T KOG0545|consen  150 VIELLQVEAPSQYQRETWQLSDDE--KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDK  227 (329)
T ss_pred             ehhhhhccCchhhccccccCCchH--hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            1111111111       0001111  1233567778999999999999999999998722                  22


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      .+...+.|.++|++..++|-++++.+..+|..+|.|..++...+++....-
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W  278 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW  278 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc
Confidence            344678999999999999999999999999999999999888877765543

>KOG0376|consensus

Probab=99.30  E-value=2.2e-12  Score=125.17  Aligned_cols=119  Identities=32%  Similarity=0.421  Sum_probs=112.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+++.++.+|+.+.|+.|+..|.+||               +++|..+..+.|+|.++++.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI---------------~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAI---------------ELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHH---------------hcCCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            36678899999999999999999999999               777778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      +|...|+|+|+|.+++.+++|.+|+.+|+....+.|+++.+...+..|.....+
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999877654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.29  E-value=3.8e-11  Score=127.91  Aligned_cols=119  Identities=24%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|++++|+..|++++...+               .....|+++|.++..+|++++|+.++++++
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al  392 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---------------RVTQSYIKRASMNLELGDPDKAEEDFDKAL  392 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45567788999999999999999999999995443               334445555555555555555555555555


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++|+++.+|+++|.+++.+|+|++|+.+|++++.++|++..++..++.+...+
T Consensus       393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence            555555555555555555555555555555555555555544444444444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.29  E-value=2.8e-11  Score=109.19  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-HHcCC--hhHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-LKLKQ--AKPA  337 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~kl~~--~~~A  337 (473)
                      .....+..+..+..+|..+...|+++.|+..|.+|+               .+.|.+..++.++|.++ ...|+  +.+|
T Consensus        65 ~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---------------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         65 KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL---------------QLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344455667788999999999999999999999999               66667788999999875 67777  5899


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       338 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      +..++++++++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+..-..
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            99999999999999999999999999999999999999999999987654433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=8.4e-12  Score=92.41  Aligned_cols=66  Identities=35%  Similarity=0.565  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN-EPELAEKDFQKVLQIDP  383 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~P  383 (473)
                      +..|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0546|consensus

Probab=99.27  E-value=8.4e-12  Score=116.53  Aligned_cols=153  Identities=29%  Similarity=0.375  Sum_probs=135.3

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh---hH-HHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG---EQ-ETERKKTLTACHLNAAMCLLKLKQAKPAK  338 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~  338 (473)
                      ...+..+...++.|+..|+.++|..|...|.++++++........   ++ ...+......++.|++.|-++++.+..|+
T Consensus       216 ~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~  295 (372)
T KOG0546|consen  216 DKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGAR  295 (372)
T ss_pred             chhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcce
Confidence            445566778899999999999999999999999999875222111   11 23466778889999999999999999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ..+..+++.++...+++||++++++.+.++++|++++..+....|++..+...+..+.....++...+++.+.+||+
T Consensus       296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999884

>KOG1126|consensus

Probab=99.23  E-value=1.4e-11  Score=123.47  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC----------CChhHHH---------HHHHHHHHHHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG----------FEGEQET---------ERKKTLTACHLNAAMC  327 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----------~~~~~~~---------~~~~~~~~~~~nla~~  327 (473)
                      ...+.|...||.|--+++++.|+.+|++|+.+.+...-          ..++.+.         .+++.+..+|+-+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            45678999999999999999999999999966553110          1111111         2344455566666666


Q ss_pred             HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      |+|+++++.|.-++++|++++|.|.......|..+.++|+.++|+..|++|+.+||.|+-.....+.++..+.++.++-
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666655554444433

>KOG0547|consensus

Probab=99.22  E-value=1.1e-10  Score=112.79  Aligned_cols=137  Identities=23%  Similarity=0.279  Sum_probs=117.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      -..+.++...|..+|-.|++-.|...++++|               .+++....+|..+|..|+..++..+-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I---------------~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAI---------------KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHH---------------hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            3458889999999999999999999999999               5566667779999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      .+||.|+..||.||+.++-+++|++|+.+|++++.++|+|.-++.++.-+..++.+..+.++ .|...-.+++
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP  459 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFP  459 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCC
Confidence            99999999999999999999999999999999999999998888888877776665554443 4444433433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.19  E-value=3.5e-10  Score=102.05  Aligned_cols=128  Identities=12%  Similarity=0.080  Sum_probs=111.1

Q ss_pred             hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy4385         281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGN  360 (473)
Q Consensus       281 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  360 (473)
                      ..++..+++..+++++               ..+|.+...|.++|.+|+.+|+++.|+..|+++++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L---------------~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKI---------------RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4677788888899888               7778889999999999999999999999999999999999999999999


Q ss_pred             HH-HhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchH
Q psy4385         361 AY-LDLNE--PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEK  424 (473)
Q Consensus       361 a~-~~lg~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~  424 (473)
                      ++ ...|+  +++|...|+++++++|++..++..++.+....++..++. ..|+++++.....+++.
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCccHH
Confidence            85 67787  599999999999999999999999999998877666544 47777777666655443

>KOG1155|consensus

Probab=99.19  E-value=1.4e-10  Score=111.64  Aligned_cols=119  Identities=20%  Similarity=0.263  Sum_probs=104.6

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      -.||-|--+++.++|+.+|++|+               .++|....+|.-+|.-|+.+++-..|+..|++|+.++|.+.+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRAL---------------kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRAL---------------KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHH---------------hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            37889999999999999999999               677778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      |||.+|++|.-++-..=|+-+|++|+.+-|+++.++..|+.|+.++.+..++.+
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            999999999988888889999999999999999899999999888866655543

>KOG0624|consensus

Probab=99.18  E-value=1.8e-10  Score=106.86  Aligned_cols=115  Identities=27%  Similarity=0.337  Sum_probs=105.1

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.++|+.++.+|+|..|+..|..|+               +.+|.+..+++.+|.+|+.+|+-..|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAv---------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAV---------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            457789999999999999999999999999               77888999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA---AVQKLTQTK  396 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~  396 (473)
                      +.|+..-|...||.+++++|++++|.++|.++|.-+|++..   ++..|..+.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            99999999999999999999999999999999999997644   444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.17  E-value=1.5e-10  Score=126.92  Aligned_cols=116  Identities=11%  Similarity=0.103  Sum_probs=90.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+.++|..+.+.|++++|+..|.+++               .++|.++.++.++|.++..+|++++|+..++++++++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL---------------~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAAL---------------ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4566677777777777777777777777               5566677788888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      |+++.+++++|.++..+|++++|+..|++|+.++|++..+....+.+....
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            888888888888888888888888888888888888877777666665544

>KOG1155|consensus

Probab=99.17  E-value=2e-10  Score=110.50  Aligned_cols=149  Identities=18%  Similarity=0.215  Sum_probs=131.7

Q ss_pred             cccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385         252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL  331 (473)
Q Consensus       252 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl  331 (473)
                      +++...|..+....+....++.-.|..|...++-..|+..|++|+               .++|.+.++|+.+|++|--+
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---------------di~p~DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---------------DINPRDYRAWYGLGQAYEIM  411 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---------------hcCchhHHHHhhhhHHHHHh
Confidence            345555566666667788889999999999999999999999999               67778899999999999999


Q ss_pred             CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYA  411 (473)
Q Consensus       332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  411 (473)
                      +-+.=|+-+|++|+++.|++...|-.+|.||.++++.++|+++|.+|+...-.+..++..|+.+.+++....++. +.|.
T Consensus       412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~ye  490 (559)
T KOG1155|consen  412 KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYE  490 (559)
T ss_pred             cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999998888999999999999997766554 3555


Q ss_pred             HHhhh
Q psy4385         412 NMFDK  416 (473)
Q Consensus       412 ~~f~~  416 (473)
                      +....
T Consensus       491 k~v~~  495 (559)
T KOG1155|consen  491 KYVEV  495 (559)
T ss_pred             HHHHH
Confidence            55553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.17  E-value=2.8e-10  Score=93.67  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=96.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ++.+...|..++..|+|.+|+..|.+++...+.            .+....+++++|.++++.++|+.|+..+.+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   69 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY   69 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence            346788999999999999999999999954332            12235688999999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         349 PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       349 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      |++   ..+++.+|.++..++++++|+..|.+++...|++..+...+
T Consensus        70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            885   57899999999999999999999999999999998765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=2.7e-10  Score=97.43  Aligned_cols=94  Identities=11%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +.++|.++..+|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|.+++.++|++..++..++.+...++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4385         401 EQKIKEKQVYANMFD  415 (473)
Q Consensus       401 ~~~~~~k~~~~~~f~  415 (473)
                      +..++. ..|.....
T Consensus       107 ~~~eAi-~~~~~Al~  120 (144)
T PRK15359        107 EPGLAR-EAFQTAIK  120 (144)
T ss_pred             CHHHHH-HHHHHHHH
Confidence            666544 34555444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.15  E-value=8.7e-10  Score=97.49  Aligned_cols=111  Identities=17%  Similarity=0.237  Sum_probs=96.4

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ......+..+..+|..+...|+|++|+.+|++++...+..            +....++.++|.++.++|+|++|+..+.
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4456678889999999999999999999999999543210            1135689999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCC
Q psy4385         343 KAIELEPNNEKAFFRRGNAYLDLNE--------------PELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~a~~~lg~--------------~~~A~~~~~~al~l~P~~  385 (473)
                      +++.++|.+..+++.+|.+|..+|+              +++|++.+++++.++|++
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999999999999988              677888888888888887

>PRK15331 chaperone protein SicA; Provisional

Probab=99.14  E-value=4.7e-10  Score=95.10  Aligned_cols=106  Identities=16%  Similarity=0.101  Sum_probs=96.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ..+..+..|..+|..|+|.+|...|+-..               ..++.+...++.||.|+..+++|++|+..|..|..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~---------------~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLC---------------IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45678889999999999999999999888               556677889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      +++++...|+.|+||+.+|+.+.|+.+|..++. .|.+..++
T Consensus       101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR  141 (165)
T ss_pred             ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence            999999999999999999999999999999998 46655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.13  E-value=5.8e-10  Score=117.92  Aligned_cols=140  Identities=6%  Similarity=0.041  Sum_probs=126.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      +..+..+..+|......|.|++|...+..++               ++.|.+..++.++|.++.+++++++|+..+++++
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---------------QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---------------hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            3457788999999999999999999999999               7788899999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD  421 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~  421 (473)
                      ..+|++..+++.+|.++.++|+|++|+..|++++..+|++..++..++.+.+.+++..++. ..|++.+.....-.
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~~~  222 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGDGA  222 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCcch
Confidence            9999999999999999999999999999999999999999999999999998887666544 46666665555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=2.4e-10  Score=119.81  Aligned_cols=120  Identities=15%  Similarity=-0.004  Sum_probs=99.3

Q ss_pred             HhhHHHHhhcchhh---------hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385         267 EQGKLLKERGTTYF---------KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA  337 (473)
Q Consensus       267 ~~a~~~~~~G~~~~---------~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  337 (473)
                      ..+..+..+|..++         ..+++.+|+..+++|+               +++|.++.++..+|.++..+|++++|
T Consensus       293 ~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---------------~ldP~~~~a~~~lg~~~~~~g~~~~A  357 (553)
T PRK12370        293 NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---------------ELDHNNPQALGLLGLINTIHSEYIVG  357 (553)
T ss_pred             ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHccCHHHH
Confidence            34455555555443         3456899999999999               66777889999999999999999999


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       338 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      +..|++|++++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....++
T Consensus       358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG  421 (553)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999988765554444333433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.12  E-value=1.7e-09  Score=95.66  Aligned_cols=144  Identities=20%  Similarity=0.215  Sum_probs=116.9

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      -..+.+..++|..|+..|++..|...+++||               +.+|....+|.-+|..|.++|+.+.|-+.|++|+
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL---------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl   96 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKAL---------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL   96 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence            3557788899999999999999999999999               6677788999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI--DPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTE  423 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~  423 (473)
                      .++|++...+.|.|--++.+|+|++|...|++|+..  .|.-...+.+++.|..+.++... .+..+++.+....+.+..
T Consensus        97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~-A~~~l~raL~~dp~~~~~  175 (250)
T COG3063          97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ-AEEYLKRALELDPQFPPA  175 (250)
T ss_pred             hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh-HHHHHHHHHHhCcCCChH
Confidence            999999999999999999999999999999999873  23445678888888876655443 334556665555554443


Q ss_pred             HH
Q psy4385         424 KE  425 (473)
Q Consensus       424 ~~  425 (473)
                      ..
T Consensus       176 ~l  177 (250)
T COG3063         176 LL  177 (250)
T ss_pred             HH
Confidence            33

>PRK12370 invasion protein regulator; Provisional

Probab=99.11  E-value=3.1e-10  Score=119.05  Aligned_cols=130  Identities=10%  Similarity=-0.006  Sum_probs=113.7

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ...+..+..+..+|..+...|++++|+..|++|+               .++|.++.+++++|.++..+|++++|+..++
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---------------~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN---------------LLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3344556778889999999999999999999999               6777788999999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-PNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      ++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.++..+++..++..
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~  462 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK  462 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999888888888888999999999999999885 7888888889988877766555443

>KOG0553|consensus

Probab=99.09  E-value=5.1e-10  Score=102.85  Aligned_cols=97  Identities=30%  Similarity=0.353  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +.-+-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+|+.||.++|+|+.|+++++.|+.+||+...++..|+.++.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy4385         398 KLREQKIKEKQVYANMFD  415 (473)
Q Consensus       398 ~~~~~~~~~k~~~~~~f~  415 (473)
                      .+.+..++... |++.+.
T Consensus       161 ~~gk~~~A~~a-ykKaLe  177 (304)
T KOG0553|consen  161 ALGKYEEAIEA-YKKALE  177 (304)
T ss_pred             ccCcHHHHHHH-HHhhhc
Confidence            99888877765 666553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.09  E-value=3.6e-10  Score=82.48  Aligned_cols=65  Identities=20%  Similarity=0.351  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>KOG1125|consensus

Probab=99.08  E-value=2.3e-10  Score=113.06  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=102.4

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ++.+.-+|..|+-.++|++|+.+|+.||               ..+|.+..+|+.||..+..-.+..+||..|++||++.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL---------------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq  494 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAAL---------------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ  494 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHH---------------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence            3455568999999999999999999999               7788889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN----------KAAVQKLTQTKQKL  399 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~----------~~~~~~l~~~~~~~  399 (473)
                      |..+.++|++|.+++.+|.|++|...|-.||.+.+.+          ..++..|+.+...+
T Consensus       495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~  555 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM  555 (579)
T ss_pred             CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999998762          23566666554443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.07  E-value=7.8e-10  Score=121.36  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .++|. ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|.++...|++++|+..|.+|++++|++..++..
T Consensus       604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n  682 (987)
T PRK09782        604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ  682 (987)
T ss_pred             HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44564 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      ++.+...+++..++.. .|++.+...
T Consensus       683 LA~al~~lGd~~eA~~-~l~~Al~l~  707 (987)
T PRK09782        683 LAYVNQRLDDMAATQH-YARLVIDDI  707 (987)
T ss_pred             HHHHHHHCCCHHHHHH-HHHHHHhcC
Confidence            9999988877665554 555555433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.07  E-value=5.1e-10  Score=86.31  Aligned_cols=83  Identities=24%  Similarity=0.318  Sum_probs=71.4

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      +++|+.|+..|++++...+.            ++ ....++++|.|++++|+|++|+..+++ +..++.++..++.+|.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            68999999999999943331            11 566888899999999999999999999 99999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHH
Q psy4385         362 YLDLNEPELAEKDFQKV  378 (473)
Q Consensus       362 ~~~lg~~~~A~~~~~~a  378 (473)
                      +..+|+|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.05  E-value=1e-09  Score=100.89  Aligned_cols=122  Identities=20%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|++++|+..|++++..               .+....++.++|.++..+|++++|+..+.+++..
T Consensus        64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  128 (234)
T TIGR02521        64 DYLAYLALALYYQQLGELEKAEDSFRRALTL---------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED  128 (234)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            3456666777777777777777777777743               3334556777777777777777777777777764


Q ss_pred             C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         348 E--PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       348 ~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      .  +.....++++|.++...|++++|...|.+++..+|++..++..++.+....++..+
T Consensus       129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            3  44556777777777777777777777777777777777777777777665544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.05  E-value=3.4e-09  Score=89.55  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      ..+|.+...+..+|.++++.+++++|+..+++++.++|.++.+++++|.++..+|++++|+..|.+++.++|.+...+..
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            55667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++.+....++..++.+ .+++.+..
T Consensus        91 la~~~~~~g~~~~A~~-~~~~al~~  114 (135)
T TIGR02552        91 AAECLLALGEPESALK-ALDLAIEI  114 (135)
T ss_pred             HHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            9999888765554433 45555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.04  E-value=4e-10  Score=83.29  Aligned_cols=67  Identities=27%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~  346 (473)
                      .+..+..+|..++..++|.+|+..|++++               .++|.++.+++++|.|+.+++ ++.+|+.+++++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai---------------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI---------------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHH---------------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46789999999999999999999999999               777788999999999999999 79999999999999


Q ss_pred             hCC
Q psy4385         347 LEP  349 (473)
Q Consensus       347 ~~p  349 (473)
                      ++|
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.03  E-value=1.1e-09  Score=85.01  Aligned_cols=99  Identities=32%  Similarity=0.503  Sum_probs=84.7

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+..+|..++..|++.+|+..+.++++..               +....++.++|.++...+++++|+..+++++.+.|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD---------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            35677888888999999999999998443               333467889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +..+++.+|.++...|++++|...+.+++.++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            8889999999999999999999999999888774

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.02  E-value=4.9e-09  Score=96.41  Aligned_cols=132  Identities=20%  Similarity=0.257  Sum_probs=110.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++++               ...|....++..+|.++..+|++++|+..+++++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKAL---------------EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46788889999999999999999999999               445556789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +|.+..+++++|.++...|++++|+..|.+++...  |....++..++.+....++..+.. ..+.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  163 (234)
T TIGR02521        95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE-KYLTRALQ  163 (234)
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            99999999999999999999999999999999864  445566777777776665544433 34444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.01  E-value=9.6e-09  Score=95.69  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=99.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|..++..|+|..|+..|++++...+.            .+....+++++|.++++++++++|+..++++++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~   98 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR   98 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999955443            123446889999999999999999999999999


Q ss_pred             hCCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         347 LEPNNEK---AFFRRGNAYLDL--------NEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       347 ~~p~~~k---a~~~~g~a~~~l--------g~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      ..|+++.   ++|.+|.++...        +++++|+..|++++..+|++..+...+.
T Consensus        99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            9998886   799999999987        8899999999999999999976654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624|consensus

Probab=99.01  E-value=1.8e-09  Score=100.36  Aligned_cols=124  Identities=16%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ................++|.+++..+++.++.-+..           -+.....+..++.|+..-+++.+||+.|+++|.
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~-----------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~  335 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE-----------TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD  335 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc-----------cceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence            334444456667788899999999999998654431           223344566788999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      ++|+++.+|..|+.||+.-..|++|+.+|++|++++|+|..++..+..+.+..++
T Consensus       336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ  390 (504)
T ss_pred             cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888877655433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.01  E-value=7.8e-09  Score=87.39  Aligned_cols=104  Identities=12%  Similarity=0.004  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      +......+.+|..++..|+++.|...|+.++.+||.+...||++|.|+..+|+|++|+..|.+|+.++|+++.....++.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385         395 TKQKLREQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       395 ~~~~~~~~~~~~k~~~~~~f~~~~~  419 (473)
                      |...+++... .++.|+........
T Consensus       112 c~L~lG~~~~-A~~aF~~Ai~~~~~  135 (157)
T PRK15363        112 CYLACDNVCY-AIKALKAVVRICGE  135 (157)
T ss_pred             HHHHcCCHHH-HHHHHHHHHHHhcc
Confidence            9988866554 44566666666643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.00  E-value=6e-09  Score=100.48  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=98.1

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      .++.+.++..+.++|...+.           ..+..+..|+++|.++..+|++..|+..|+++++++|+++.+|+++|.+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~-----------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILASRDL-----------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHccccC-----------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35678899999998843221           1224577899999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       362 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      +..+|++++|+..|.++++++|++..++..++.+....++..++.
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999999887666555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.00  E-value=1.9e-09  Score=115.14  Aligned_cols=133  Identities=11%  Similarity=0.103  Sum_probs=95.3

Q ss_pred             hhHHHHhhcchhhhcccHHH----HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFEL----ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      .+..+..+|..++..|++.+    |+..|++++               .++|....++.++|.++.++|++++|+..+++
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---------------~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---------------QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34555666777777777764    667777777               55566677888888888888888888888888


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +++++|+++.+++.+|.+|..+|++++|+..|++++..+|++..+...++.+....++..++ .+.|++....
T Consensus       310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA-~~~l~~al~~  381 (656)
T PRK15174        310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA-ESVFEHYIQA  381 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH-HHHHHHHHHh
Confidence            88888888888888888888888888888888888888888766555555555544433332 2344444433

>PLN02789 farnesyltranstransferase

Probab=99.00  E-value=4.3e-09  Score=101.69  Aligned_cols=123  Identities=14%  Similarity=-0.007  Sum_probs=109.0

Q ss_pred             chhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh--hHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA--KPAK  338 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~--~~A~  338 (473)
                      ....+....++..+|..+...+ ++.+|+..+.+++               ..+|.+..+|.+++.++.+++.+  +.++
T Consensus        64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i---------------~~npknyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA---------------EDNPKNYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH---------------HHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence            3445566778888899998888 6899999999999               67777888999999999999874  7889


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ..++++|+++|.|..||+.|+.++..+++|++|++++.++++++|.|..++..+..+...+
T Consensus       129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999998888776544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=1.1e-09  Score=96.96  Aligned_cols=131  Identities=18%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             cccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385         258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA  337 (473)
Q Consensus       258 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  337 (473)
                      ++...+..+....++.-++..|.+.|+.+.|-+.|++|+               .++|.+..+++|.|..++.+|+|++|
T Consensus        58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---------------sl~p~~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---------------SLAPNNGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---------------hcCCCccchhhhhhHHHHhCCChHHH
Confidence            333445555667788888889999999999999999999               66777788999999999999999999


Q ss_pred             HHHHHHHhhhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         338 KDQCDKAIELE--PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       338 ~~~~~~al~~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      ...+++|+..-  +.-+..|-|+|.|-++.|+++.|..+|+++|+++|+++.....+.......+++-
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            99999998752  4566888999999999999999999999999999999888777777765554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.98  E-value=9.5e-09  Score=90.47  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+...|..++..|+|++|+..|.+++.+.+.            ....+.+++|+|.++..+|++++|+..|.+++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346788899999999999999999999999965331            11235689999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCCH
Q psy4385         346 ELEPNNEKAFFRRGNAYL-------DLNEPE-------LAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~-------~lg~~~-------~A~~~~~~al~l~P~~~  386 (473)
                      .++|.+..+++++|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999999999998       777876       55566667788888764

>KOG1125|consensus

Probab=98.97  E-value=4.4e-09  Score=104.18  Aligned_cols=155  Identities=13%  Similarity=0.134  Sum_probs=129.6

Q ss_pred             ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--------------------------------
Q psy4385         257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG--------------------------------  304 (473)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------------------------  304 (473)
                      .++.+..+.+..+++|.-+|..+...++=..|+..+++++++.+....                                
T Consensus       307 afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y  386 (579)
T KOG1125|consen  307 AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY  386 (579)
T ss_pred             HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence            334466777888999999999999999999999999999887755100                                


Q ss_pred             ------------------CChh----------HHHHHHH--HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         305 ------------------FEGE----------QETERKK--TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       305 ------------------~~~~----------~~~~~~~--~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                                        .+..          +.....+  ..+.++.-||..|.-.++|++|+++|+.||..+|++...
T Consensus       387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l  466 (579)
T KOG1125|consen  387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL  466 (579)
T ss_pred             hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence                              0000          1112233  467788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYA  411 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  411 (473)
                      |.|+|.++..-.+.++|+..|.+||+|.|....++++|+.....++.++++.+....
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888775444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.95  E-value=6.2e-09  Score=94.01  Aligned_cols=123  Identities=20%  Similarity=0.129  Sum_probs=111.4

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+...|..++..|+|..|+..+.++.               .+.|.+..+|+-+|.+|.++|+++.|...|.+++++.|
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~---------------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAA---------------RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHh---------------ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            355558999999999999999999999               56667789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      +++.++.|+|..|+-.|+++.|...+..+...-+.+..+..+|..+....+...+.++
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            9999999999999999999999999999999888899999999998877766665554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.94  E-value=6.7e-09  Score=110.95  Aligned_cols=125  Identities=12%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH----HHHHHHHHhhhCCC
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP----AKDQCDKAIELEPN  350 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~----A~~~~~~al~~~p~  350 (473)
                      .|..++..|++++|+..|.+++               ...|....+++++|.++..+|++++    |+..|+++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al---------------~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESAL---------------ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            4566777888888888888888               4456678899999999999999996    89999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++.++..+|.++..+|++++|+..|++++.++|++..++..++.+....++..++.. .|.++..
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~-~l~~al~  346 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD-EFVQLAR  346 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
Confidence            999999999999999999999999999999999999999999999887766654433 4454443

>KOG1173|consensus

Probab=98.92  E-value=2.9e-09  Score=105.06  Aligned_cols=124  Identities=22%  Similarity=0.248  Sum_probs=106.1

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ...-.+.++|...|..+.|.+|..+|+.++...+....       + .+.....+.|+|.++.+++.|.+||..++++|.
T Consensus       412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34456788999999999999999999999944432111       0 114567899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      +.|.++.++-..|.+|..+|+++.|+..|.+||-++|+|.-+...|+.+.+.
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998888888876654

>KOG4555|consensus

Probab=98.92  E-value=4.7e-08  Score=78.62  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=95.9

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      -++....+--.|..+...|+.+.|+..|.+++               .+-|.++++|+|+|+++.-.|+.++|+++.++|
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal---------------~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQAL---------------CLAPERASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------------HhcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            44556677778999999999999999999999               556668999999999999999999999999999


Q ss_pred             hhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         345 IELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       345 l~~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      +++.....    .+|..||..|..+|+-+.|..+|..|.++...  -++.+|-
T Consensus       104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~--FAr~QLV  154 (175)
T KOG4555|consen  104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK--FAREQLV  154 (175)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH--HHHHHHH
Confidence            99965433    67889999999999999999999999998643  3444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.90  E-value=4.3e-09  Score=100.83  Aligned_cols=133  Identities=15%  Similarity=0.230  Sum_probs=102.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|..+.+.|++++|+..|++|+               .++|.+..+...++.+++..|+++++...+.....
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---------------~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~  208 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKAL---------------ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK  208 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---------------HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            345677889999999999999999999999               77888899999999999999999999999999888


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ..|.++..+..+|.+|..+|++++|+..|++++..+|+|+.+...++.+....++..++.. .+++.+.
T Consensus       209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~  276 (280)
T PF13429_consen  209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALR  276 (280)
T ss_dssp             H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            8899999999999999999999999999999999999999999999999988776665443 4444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.89  E-value=8.3e-09  Score=77.08  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=64.7

Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       325 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      ...|++.++|+.|+.++++++.++|+++.+++.+|.++..+|+|.+|+.+|+++++.+|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999999999999999999999887655443

>KOG1308|consensus

Probab=98.88  E-value=1.2e-09  Score=101.86  Aligned_cols=124  Identities=26%  Similarity=0.315  Sum_probs=109.7

Q ss_pred             CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ  340 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  340 (473)
                      ..++.++.+...+-.+..++..|.++.|+..|..||               .++|..+.+|-++|.++++++.+..|+.+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai---------------~lnp~~a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAI---------------ELNPPLAILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccc---------------ccCCchhhhcccccceeeeccCCchhhhh
Confidence            457778888899999999999999999999999999               77778899999999999999999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      |..|+.++|+..+.|-.+|.++..+|+|++|..+|..|++++-+ ..+-..|..+....+
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~  229 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAG  229 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchh
Confidence            99999999999999999999999999999999999999999843 444555555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.87  E-value=1.1e-08  Score=108.41  Aligned_cols=133  Identities=10%  Similarity=0.013  Sum_probs=114.8

Q ss_pred             ccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy4385         249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL  328 (473)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  328 (473)
                      ..++.+...|.-..+..++.+.++.+.+..+++.+++++|...+++++               ...|.++..++++|.|+
T Consensus       100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---------------~~~p~~~~~~~~~a~~l  164 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---------------SGGSSSAREILLEAKSW  164 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---------------hcCCCCHHHHHHHHHHH
Confidence            444555556666667777889999999999999999999999999999               66777899999999999


Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA-VQKLTQTK  396 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~-~~~l~~~~  396 (473)
                      .++|+|++|+..|++++..+|++..++..+|.++..+|+.++|...|++|+.....-... ...+..+.
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN  233 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987655443 33444443

>KOG0550|consensus

Probab=98.86  E-value=3.5e-08  Score=94.13  Aligned_cols=146  Identities=15%  Similarity=0.159  Sum_probs=120.0

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+.+++-+|.+++...+.+.|+.+|++++++.+.-.   ..-.....+.....+.+.|.-.++.|+|..|.+.|..+|.
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~---~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ---KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhh---hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            4577888999999999999999999999998765411   1112234566677888999999999999999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         347 LEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       347 ~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +||+|    ++.|++||.++..+|+..+|+.++..|+.|||.--.++...+.|...+.+..+.-+ -|.++.+.
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~q~  350 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAMQL  350 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence            99985    47899999999999999999999999999999988888888888888766655443 34444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.84  E-value=2.2e-08  Score=114.05  Aligned_cols=147  Identities=18%  Similarity=0.181  Sum_probs=114.9

Q ss_pred             cccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy4385         250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL  329 (473)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~  329 (473)
                      +++.+...+.......+..+..+..+|..+++.|++++|+..|+++++..+..... ......+......+..++|.+++
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~-~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR-DKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch-hHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444444444444455567888999999999999999999999999776542211 00011122223344567799999


Q ss_pred             HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +.|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+..+..
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988887777653

>TIGR00115 tig trigger factor

Probab=98.84  E-value=1.8e-08  Score=101.62  Aligned_cols=99  Identities=22%  Similarity=0.431  Sum_probs=84.0

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+++|+++. ||..|+++.  ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+.     ++
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~g  217 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----AG  217 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----CC
Confidence            4788999999999987 899988863  468999999999999999999999999999999998888887654     68


Q ss_pred             CceEEEEEEEeeeeccCCCCCCCCceEE
Q psy4385         125 STLVFEVEMISWEAEDISPTHDGGIRRE  152 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k~  152 (473)
                      .++.|.|+|.++....++ .-+..++++
T Consensus       218 k~~~f~v~i~~I~~~~~p-eldDefak~  244 (408)
T TIGR00115       218 KEATFKVTVKEVKEKELP-ELDDEFAKE  244 (408)
T ss_pred             CeEEEEEEEEEeccCCCC-CCCHHHHHh
Confidence            999999999999876554 344555554

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PLN02789 farnesyltranstransferase

Probab=98.84  E-value=8.7e-08  Score=92.68  Aligned_cols=121  Identities=16%  Similarity=0.107  Sum_probs=106.2

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIELEPNNEKAFF  356 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~  356 (473)
                      .+...+++++|+..+.++|               .++|.+..+|.+++.++.+++ .+++|+..++++++.+|++..+|+
T Consensus        46 ~l~~~e~serAL~lt~~aI---------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~  110 (320)
T PLN02789         46 VYASDERSPRALDLTADVI---------------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH  110 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHH---------------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence            3566788999999999999               888899999999999999999 689999999999999999999999


Q ss_pred             HHHHHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         357 RRGNAYLDLNEP--ELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       357 ~~g~a~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +|+.++..+++.  ++++..+.++++++|.|-.++...+.+...++...+ +-+.+.+++
T Consensus       111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I  169 (320)
T PLN02789        111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL  169 (320)
T ss_pred             HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence            999999999874  788999999999999999999999998888866543 444445444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.83  E-value=1e-08  Score=75.42  Aligned_cols=67  Identities=30%  Similarity=0.389  Sum_probs=61.4

Q ss_pred             HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      +++.|+|++|+..+++++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3678999999999999999999999999999999999999999999999999999998887766654

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.83  E-value=1.5e-08  Score=112.38  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +..++..+...|++.+|+..+++++..               .|.+..+++++|.++.++|++++|+..|+++++.+|++
T Consensus       739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  803 (899)
T TIGR02917       739 AIKLHRALLASGNTAEAVKTLEAWLKT---------------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN  803 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            344555555556666666666555522               22234444455555555555555555555555555554


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +.++.++|.++...|+ .+|+..+++++.+.|++..+...++.+...+
T Consensus       804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK  850 (899)
T ss_pred             HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            4444444444444444 4444444444444444444444444444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=1.1e-08  Score=89.52  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=114.6

Q ss_pred             CceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHH
Q psy4385         241 PATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC  320 (473)
Q Consensus       241 ~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~  320 (473)
                      .+.-++-+..+.+....-.++.+++   |..+.++|+.|-..|-+..|...|.+++               .++|..+.+
T Consensus        40 ~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaL---------------ai~P~m~~v  101 (297)
T COG4785          40 TLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQAL---------------AIRPDMPEV  101 (297)
T ss_pred             cHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhh---------------hcCCCcHHH
Confidence            3555555555555555556666654   7899999999999999999999999999               777888999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ++.+|.-+...|+|+.|.+.++.++++||.+-.|+.|||.+++--|+|.-|.+++.+..+-||+++--
T Consensus       102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999743

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.82  E-value=1.7e-08  Score=110.01  Aligned_cols=116  Identities=9%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..+...|++.+|+..|++++               .+.|.+..++.++|.++...+++++|+..++++++
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~  111 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKAL---------------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS  111 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345568889999999999999999999999               66667788899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      .+|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.+...
T Consensus       112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999 99999999999999999999999999999999998888777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=6.1e-08  Score=90.96  Aligned_cols=112  Identities=12%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             HHHHhhcchh-hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         270 KLLKERGTTY-FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       270 ~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ...+..+..+ ++.|+|.+|+..|+..+...+..            +....+++.+|.+|+..|+|+.|+..|.+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4556666666 66799999999999999665542            1235688999999999999999999999999988


Q ss_pred             CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         349 PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       349 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      |++   +.+++.+|.++..+|++++|+..|+++++..|++..+.....
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~  258 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK  258 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            874   688999999999999999999999999999999886654433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.79  E-value=5.6e-08  Score=90.52  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=105.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--------CChhHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--------KQAKPAKDQ  340 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~  340 (473)
                      ...+..+|..++..+++++|+..|+++++..+...            ....+++++|.|+.++        +++++|+..
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~  137 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA  137 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence            35678899999999999999999999996655321            1234688999999887        889999999


Q ss_pred             HHHHhhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAF-----------------FRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKLTQTKQKLR  400 (473)
Q Consensus       341 ~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~  400 (473)
                      +++++..+|++..++                 +.+|.+|+..|++.+|+..|.+++...|++   ..++..++.+...++
T Consensus       138 ~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg  217 (235)
T TIGR03302       138 FQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG  217 (235)
T ss_pred             HHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence            999999999986442                 467889999999999999999999998765   578889999988887


Q ss_pred             HHHHHHH
Q psy4385         401 EQKIKEK  407 (473)
Q Consensus       401 ~~~~~~k  407 (473)
                      +..+...
T Consensus       218 ~~~~A~~  224 (235)
T TIGR03302       218 LKDLAQD  224 (235)
T ss_pred             CHHHHHH
Confidence            7665543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.79  E-value=4.7e-08  Score=98.18  Aligned_cols=120  Identities=17%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+..++..+.+.|+|++|+..|.+++...+..          ........+.++|.++++.+++++|+..++++++.+|
T Consensus       142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS----------LRVEIAHFYCELAQQALARGDLDAARALLKKALAADP  211 (389)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc----------chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence            344455555666666666666666555332210          0001233456667677777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-AAVQKLTQTKQKL  399 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~  399 (473)
                      ++..+++.+|.+|...|++++|+..|++++..+|.+. .++..+..+....
T Consensus       212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            7777777777777777777777777777776666552 3344444444433

>KOG1129|consensus

Probab=98.79  E-value=2.9e-09  Score=98.36  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=100.2

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--  349 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--  349 (473)
                      .--.|..||..++.+.|+++|++.+               ++--.++.+++|+|.|++-.++|+-++..+.+|+..-.  
T Consensus       327 iAcia~~yfY~~~PE~AlryYRRiL---------------qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~  391 (478)
T KOG1129|consen  327 IACIAVGYFYDNNPEMALRYYRRIL---------------QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP  391 (478)
T ss_pred             eeeeeeccccCCChHHHHHHHHHHH---------------HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence            3346777888888888888888888               55556788999999999999999999999999997743  


Q ss_pred             -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         350 -NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       350 -~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                       .-...|||+|.+....|++..|.++|+.||.-||++.+++.+|+.+..+.++-
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence             34688999999999999999999999999999999999999999987665443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.77  E-value=6.7e-08  Score=110.16  Aligned_cols=127  Identities=18%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      ..|..++..|++++|+..|++++               ..+|.+..++.++|.+++++|++++|+.+++++++++|++..
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL---------------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAV---------------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence            45888999999999999999999               556667889999999999999999999999999999998753


Q ss_pred             H--------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         354 A--------------FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       354 a--------------~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      .              +..+|.++...|++++|+..|++++.++|++..++..|+.+....++..++. +.|++++..
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~-~~y~~aL~~  414 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE-RYYQQALRM  414 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence            1              2356889999999999999999999999999999999999988776665544 355655543

>KOG1840|consensus

Probab=98.76  E-value=3.4e-08  Score=99.99  Aligned_cols=147  Identities=22%  Similarity=0.262  Sum_probs=120.7

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+...|..|...++|.+|+..|++|+.+......       ..+|..+..+.|||..|.+.|+|.+|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            4566777778999999999999999999999987764332       335677889999999999999999999999999


Q ss_pred             hhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELE--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-----PNN---KAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       345 l~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-----P~~---~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      +++-        |.-...+.+.+.++..++++++|+..|++++++-     ++|   ..++.+|+.++..++++.+++. 
T Consensus       310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-  388 (508)
T KOG1840|consen  310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-  388 (508)
T ss_pred             HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-
Confidence            9773        3344678899999999999999999999998873     333   4568899999999988887764 


Q ss_pred             HHHHHhhhhcC
Q psy4385         409 VYANMFDKFAK  419 (473)
Q Consensus       409 ~~~~~f~~~~~  419 (473)
                      +|+++..+...
T Consensus       389 ~~k~ai~~~~~  399 (508)
T KOG1840|consen  389 LYKKAIQILRE  399 (508)
T ss_pred             HHHHHHHHHHh
Confidence            67777766643

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.76  E-value=2.1e-08  Score=86.13  Aligned_cols=66  Identities=21%  Similarity=0.354  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG  230 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g  230 (473)
                      .+..++.|++||++++ +|++|++     .|..|.+|.+.   +++||+.||..|+.|++..|.|||..+||...
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~---vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGS---LSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCC---ccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4678899999999999 8999996     37899999887   99999999999999999999999999999753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.76  E-value=9.9e-08  Score=105.74  Aligned_cols=124  Identities=25%  Similarity=0.350  Sum_probs=102.2

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+...|..++..|+|++|+..|++++..               .|....+++.+|.+++..|+|++|+..+++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  186 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAI---------------DPRSLYAKLGLAQLALAENRFDEARALIDEVL  186 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445678888999999999999999999999944               44456678888888888888888888888888


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      ..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..+..+....++..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            88888888888888888888888888888888888888888887777777665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=1.1e-07  Score=79.17  Aligned_cols=110  Identities=21%  Similarity=0.329  Sum_probs=95.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..++..|...++.|+|..|+..++....-.+..            +....+.+.++.+|++.++|..|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            5578889999999999999999999887655542            2345688899999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         349 PNNE---KAFFRRGNAYLDLNE---------------PELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       349 p~~~---ka~~~~g~a~~~lg~---------------~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      |.++   -|+|.+|.+++.+..               ...|..+|++.++.-|++.-+..
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9876   589999999999987               88999999999999999876543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.76  E-value=1.5e-07  Score=94.60  Aligned_cols=131  Identities=11%  Similarity=0.112  Sum_probs=105.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..+++++|+..|+++++               ..|....+++.+|.++.+.|++++|+..+++++..+
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALA---------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            34466788899999999999999999994               444556788999999999999999999999999999


Q ss_pred             CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         349 PNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       349 p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      |.+. .++..++.+|...|++++|+..++++++.+|++..+ ..+..+..+.++..+ ....+.+++..
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~-A~~~l~~~l~~  311 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEA-AQALLREQLRR  311 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHH-HHHHHHHHHHh
Confidence            8874 567889999999999999999999999999987554 666666665544443 33455555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.74  E-value=9.2e-08  Score=94.51  Aligned_cols=94  Identities=22%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +...|..++..++|..|+..|++||+++|+++.+|+++|.+|..+|+|++|+.++++|+.++|++..++..++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4385         401 EQKIKEKQVYANMFD  415 (473)
Q Consensus       401 ~~~~~~k~~~~~~f~  415 (473)
                      ++.++.. .|+++..
T Consensus        85 ~~~eA~~-~~~~al~   98 (356)
T PLN03088         85 EYQTAKA-ALEKGAS   98 (356)
T ss_pred             CHHHHHH-HHHHHHH
Confidence            7665544 4444443

>PRK01490 tig trigger factor; Provisional

Probab=98.74  E-value=6.1e-08  Score=98.67  Aligned_cols=99  Identities=20%  Similarity=0.433  Sum_probs=82.4

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+++|+++. ||+.|+++.  ..++.|.+|.+.+++||+++|.||++|+++.|.+++...|+....     ++
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            4789999999999998 898888763  458999999999999999999999999999999988888876543     67


Q ss_pred             CceEEEEEEEeeeeccCCCCCCCCceEE
Q psy4385         125 STLVFEVEMISWEAEDISPTHDGGIRRE  152 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k~  152 (473)
                      .++.|.|+|.++....++ +-+..+.+.
T Consensus       229 k~~~f~v~v~~V~~~~~p-el~Defak~  255 (435)
T PRK01490        229 KEATFKVTVKEVKEKELP-ELDDEFAKK  255 (435)
T ss_pred             CeEEEEEEEEEeccCCCC-CCCHHHHHh
Confidence            899999999999876554 334444443

>KOG2076|consensus

Probab=98.72  E-value=2.4e-07  Score=96.27  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=71.9

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+...+|.+|.+|++++|...+.++|+.               +|.+..+|.-||.||-.+|+.++|+...-.|-.++
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~  203 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ---------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN  203 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            667888999999999999999999999954               44445555555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      |.+..-|.+++....++|.++.|+-+|.+|++.+|.|.........++++++
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G  255 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG  255 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence            5555555555555555555555555555555555555444444444444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.72  E-value=8.3e-08  Score=82.24  Aligned_cols=99  Identities=29%  Similarity=0.349  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhhhCCCCHHH
Q psy4385         285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ----------AKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~----------~~~A~~~~~~al~~~p~~~ka  354 (473)
                      |+.|.+.|+.+.               ..+|.++..++|-|.+++.+.+          +++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y---------------~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAY---------------AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHH---------------HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHH---------------HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            567778888777               7788889999999998887744          567899999999999999999


Q ss_pred             HHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNE-----------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       355 ~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      ++++|.||..++.           |++|..+|++|...+|+|...+..|..+.+.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            9999999988765           7889999999999999999888888777543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2003|consensus

Probab=98.71  E-value=8.8e-08  Score=92.16  Aligned_cols=123  Identities=20%  Similarity=0.245  Sum_probs=105.8

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+.++.+.||..|..|+|++|...|++|+               ..+.....+++|+|..+-++|+.++|+++|-+.-.+
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal---------------~ndasc~ealfniglt~e~~~~ldeald~f~klh~i  553 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEAL---------------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI  553 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHH---------------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence            35567789999999999999999999999               444556788999999999999999999999887776


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      --+++..++.++.+|..+.+...|++.|.++..+-|+++.++..|+.++.+.+...++
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            6788999999999999999999999999999999999999998888888766554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.70  E-value=2.1e-08  Score=73.01  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=57.4

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  352 (473)
                      .+|..++..|+|++|+..|++++               ...|.+..+++.+|.|+..+|++++|+..++++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l---------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQAL---------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHH---------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            47889999999999999999999               44567899999999999999999999999999999999975

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=2.3e-07  Score=90.75  Aligned_cols=132  Identities=18%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .....+..+..++..++++.|...+...+               ...|.++.++.-.+..+++.++..+|++.+++++.+
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~---------------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLI---------------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            34456667777788888888888888766               667778889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +|+..-..+++|++|++.|++.+|+..++..+.-+|+++..|..|++.+..++...+........+|
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998877766665544444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.69  E-value=7.3e-07  Score=83.06  Aligned_cols=122  Identities=18%  Similarity=0.256  Sum_probs=98.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..++..|..++..|+|..|+..|++.+...+..            +....+.+++|.+|+++++|..|+..+++.++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            5567788999999999999999999999766541            3445567899999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHhcCC------------------HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q psy4385         349 PNNE---KAFFRRGNAYLDLNE------------------PELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLREQ  402 (473)
Q Consensus       349 p~~~---ka~~~~g~a~~~lg~------------------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~  402 (473)
                      |+++   .++|.+|.++..++.                  -.+|+..|++.++..|+..   ++...+..+..++.+.
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            8865   679999999766641                  2578899999999999975   4555666666555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.69  E-value=3.8e-08  Score=96.46  Aligned_cols=70  Identities=21%  Similarity=0.279  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA---FFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      ..+|..+.+++|+|.+|+++|+|++|+..|++||+++|++..+   ||++|.||..+|++++|+.+|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4577889999999999999999999999999999999999865   999999999999999999999999998

>KOG2002|consensus

Probab=98.69  E-value=1.5e-07  Score=98.50  Aligned_cols=125  Identities=17%  Similarity=0.159  Sum_probs=109.9

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+....+..+..+++-+|-.|+|..+...+..|+...            ...+..+..++++|.+|..+|+|++|..+|-
T Consensus       264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3334455667778888899999999999998888432            3355678889999999999999999999999


Q ss_pred             HHhhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         343 KAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       343 ~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++++.++++ .-+++.+|+.|...|+++.|..+|++++...|++.+....|+.++...
T Consensus       332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            999999998 889999999999999999999999999999999999999999998776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=3e-07  Score=70.95  Aligned_cols=85  Identities=32%  Similarity=0.441  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++++|.++...+++++|+..+.++++..|.+..+++.+|.++...+++++|+..|.+++.+.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999998888888887776


Q ss_pred             HHHHH
Q psy4385         400 REQKI  404 (473)
Q Consensus       400 ~~~~~  404 (473)
                      ++..+
T Consensus        82 ~~~~~   86 (100)
T cd00189          82 GKYEE   86 (100)
T ss_pred             HhHHH
Confidence            55443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.67  E-value=4.6e-07  Score=74.31  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKL  392 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l  392 (473)
                      ..++++|..+++.++|++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467899999999999999999999999999877   5799999999999999999999999999999986   5677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         393 TQTKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       393 ~~~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      +.+...+++..+.. +.+..+....
T Consensus        83 ~~~~~~~~~~~~A~-~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAK-ATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHH-HHHHHHHHHC
Confidence            88877665544333 4555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.65  E-value=5.7e-08  Score=73.59  Aligned_cols=67  Identities=27%  Similarity=0.341  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE-------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      |..+.+++|+|.+|..+|+|++|+.+|++++++.       |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5678899999999999999999999999999662       223578999999999999999999999999976

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.65  E-value=6.3e-07  Score=81.38  Aligned_cols=123  Identities=20%  Similarity=0.296  Sum_probs=96.1

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..++..|..++..|+|.+|+..|++.+...+..            +....+.+.+|.++++.++|..|+..+++.+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            36688999999999999999999999999766542            345678899999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q psy4385         348 EPNNE---KAFFRRGNAYLDLN-----------EPELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLREQ  402 (473)
Q Consensus       348 ~p~~~---ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~  402 (473)
                      .|+++   .++|.+|.+++.+.           ...+|+..|+..+...|++.   .+...+..+...+.+.
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence            99876   58999999987654           24589999999999999985   4555666666555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=5.2e-07  Score=79.40  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=91.7

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---H
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---E  352 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~  352 (473)
                      .+.+|-...|..+...+...++..             -......+++++|.++..+++|++|+..|.+++.+.|+.   +
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   72 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTT-------------SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS   72 (168)
T ss_pred             ccccccccccccchhhhhHhccCC-------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence            445666667777777775554321             123467889999999999999999999999999997663   4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      .+|+++|.+|..+|++++|+..|++++.++|.+...+..++.+...+.
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999999998888888887444

>KOG1128|consensus

Probab=98.64  E-value=1.2e-07  Score=96.54  Aligned_cols=131  Identities=14%  Similarity=0.232  Sum_probs=115.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+.+.+..|+-.+.+++|.+|.++++.++               +++|+....|+++|.|.++++++..|.++|.+++.+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl---------------~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSL---------------EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHh---------------hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            45567788888899999999999999999               888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +|++..+|.|++.+|..+++-.+|...+++|++.+-++-.++.+...+.......+++- +.|.++.
T Consensus       549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~-~A~~rll  614 (777)
T KOG1128|consen  549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI-KAYHRLL  614 (777)
T ss_pred             CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH-HHHHHHH
Confidence            99999999999999999999999999999999999888888888877777776555443 3444444

>KOG4162|consensus

Probab=98.63  E-value=1.2e-07  Score=97.04  Aligned_cols=103  Identities=22%  Similarity=0.299  Sum_probs=57.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH--HHHHHhh
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKD--QCDKAIE  346 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~--~~~~al~  346 (473)
                      +..++..|..+..+|++.+|...|..|+               .++|..+.+...+|.|+++.|+...|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al---------------~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVAL---------------ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHH---------------hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            3344555555555555555555555555               4444455555555555555555555555  5555555


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +||.|.+|||.+|.++..+|+.++|..+|..|+++++.++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            5555555555555555555555555555555555555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=3.1e-07  Score=83.18  Aligned_cols=121  Identities=14%  Similarity=0.099  Sum_probs=97.3

Q ss_pred             HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385         273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  352 (473)
                      ..+.+.++..|+-+.+.....++..               ..+....++.-+|..++..|+|..|+..+.++..++|++.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~---------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~  134 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI---------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW  134 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc---------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence            4455556666666666655555442               2223344555589999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      ++|.-+|.+|.++|++++|...|.+++++.|+++.+..+|+..+...++.+.+++-
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999988776665555543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.62  E-value=5.4e-07  Score=98.33  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ..++..+|..+...|++++|+..+++++...|.++.+++.+|.++...|++++|+..|++++.++|++..++..++.+..
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCC
Q psy4385         398 KLREQKIKEKQVYANMFDKFAKH  420 (473)
Q Consensus       398 ~~~~~~~~~k~~~~~~f~~~~~~  420 (473)
                      .+++..+.+. .++.+....++.
T Consensus       439 ~~~~~~~A~~-~~~~ll~~~Pd~  460 (765)
T PRK10049        439 DLQEWRQMDV-LTDDVVAREPQD  460 (765)
T ss_pred             HhCCHHHHHH-HHHHHHHhCCCC
Confidence            7766555443 555655544443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.60  E-value=4.6e-07  Score=80.03  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      ++..+.+++++|.++...|++++|+.+|++++.+.|+.   ..+++++|.++..+|++++|+..|.+++.++|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            55677899999999999999999999999999987653   478999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q psy4385         391 KLTQTKQKLRE  401 (473)
Q Consensus       391 ~l~~~~~~~~~  401 (473)
                      .++.+...+.+
T Consensus       111 ~lg~~~~~~g~  121 (172)
T PRK02603        111 NIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHcCC
Confidence            88888766544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=4.1e-07  Score=83.44  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=98.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+++.+..+++.|+|..|...|..-|+-.+..            +..+.+++-||.|++.+|+|+.|...|..+.+-.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            3448889999999999999999999999877653            2346789999999999999999999999999998


Q ss_pred             CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         349 PNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       349 p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      |+++   .+++.+|.+...+|+.++|.+.|+++++-.|....+...
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            8765   569999999999999999999999999999998877544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.3e-07  Score=84.29  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=100.3

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKD  339 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~  339 (473)
                      ...+..++.+.-+|..|+..+++..|...|.+|+               .+.+.++..+.-+|.+++...   .-.++..
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---------------rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL---------------RLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            4445667788899999999999999999999999               556667888888888877765   3567899


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      .+++++.+||.|+.+++.+|..++..|+|.+|+..++..+.+.|.+..-...+...
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999876654444433

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.5e-07  Score=92.67  Aligned_cols=89  Identities=21%  Similarity=0.437  Sum_probs=74.1

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS  125 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~  125 (473)
                      ++.||.|+|.|.|+. ||..|.....  .-+.|.+|.+.+||||+.+|.||+.|++..|.+....-|.....     ++.
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK  229 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGK  229 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCC
Confidence            788999999999987 8998887633  45899999999999999999999999998865555455544333     678


Q ss_pred             ceEEEEEEEeeeeccCC
Q psy4385         126 TLVFEVEMISWEAEDIS  142 (473)
Q Consensus       126 ~l~~~v~l~~~~~~~~~  142 (473)
                      ...|.|+|..+....++
T Consensus       230 ~a~F~V~vkeVk~~elp  246 (441)
T COG0544         230 EATFKVKVKEVKKRELP  246 (441)
T ss_pred             ceEEEEEEEEEeecCCC
Confidence            99999999999876665

>KOG1310|consensus

Probab=98.58  E-value=3.7e-07  Score=89.58  Aligned_cols=115  Identities=23%  Similarity=0.170  Sum_probs=101.8

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKD  339 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~  339 (473)
                      .+.++.++..+..||..|..+....|+..|.+++               +.-+....+|.|+|.++++.+   +.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~---------------q~~~~~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAI---------------QYVPDAIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHh---------------hhccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence            4556778899999999999999999999999999               556678899999999999864   7788999


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      +|..|++++|...||+|+++.|+..++++.+|+.+...+....|.+.......
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v  485 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV  485 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence            99999999999999999999999999999999999998888888665544333

>KOG4234|consensus

Probab=98.55  E-value=2.1e-06  Score=74.49  Aligned_cols=140  Identities=18%  Similarity=0.271  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~-----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      -+-.-|+-+++.|+|..|...|..||.+.|..+     -.|.++|.|+++++.++.|+.++.+|++|+|.+..+....+.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            344567888999999999999999999998754     467799999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHh----------ccCchhhhhcCccchhhhccCcccccccCCceeec
Q psy4385         395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEK----------KKEPDVMKTLGEWGAEERGRESTNFEKENPNIFML  464 (473)
Q Consensus       395 ~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  464 (473)
                      ++.++.++. ..-.-|++++.......+..+...+          +...+.|..++..+..+    -..+.-..+|+.|.
T Consensus       177 ayek~ek~e-ealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~i----L~pFGlStdnFqmv  251 (271)
T KOG4234|consen  177 AYEKMEKYE-EALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFI----LSPFGLSTDNFQMV  251 (271)
T ss_pred             HHHhhhhHH-HHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhh----cccccccccceeee
Confidence            888884444 4445677777665554422222111          12334444455555444    22344556666666

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.51  E-value=3.9e-07  Score=68.95  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=61.8

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.++|..++..|+|++|+..|++++.+.....        ...+..+.++.|+|.|+..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--------DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4578899999999999999999999999997743221        23456688999999999999999999999999997


Q ss_pred             h
Q psy4385         347 L  347 (473)
Q Consensus       347 ~  347 (473)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.51  E-value=1.9e-07  Score=68.56  Aligned_cols=67  Identities=22%  Similarity=0.303  Sum_probs=59.3

Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      +++.|+|++|+..|++++               ...|.+..+++.+|.|+++.|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKAL---------------QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHH---------------HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            467899999999999999               67777899999999999999999999999999999999987777665


Q ss_pred             HH
Q psy4385         359 GN  360 (473)
Q Consensus       359 g~  360 (473)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

...

>KOG1840|consensus

Probab=98.50  E-value=1.2e-06  Score=88.88  Aligned_cols=145  Identities=16%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      +.....+..++..|+.+|+|+.|+..+++|++.+.....       ...+.......++|..|+.+++|.+|+..|++||
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344556667999999999999999999999976533211       1244555566679999999999999999999999


Q ss_pred             hh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy4385         346 EL--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID-----PNNKAAV---QKLTQTKQKLREQKIKEKQV  409 (473)
Q Consensus       346 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~-----P~~~~~~---~~l~~~~~~~~~~~~~~k~~  409 (473)
                      .+        +|.-+-++.++|.+|...|+|++|..++++|+++-     .+.+.+.   ..+..+...+.+.+++. ..
T Consensus       269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~-~l  347 (508)
T KOG1840|consen  269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK-KL  347 (508)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence            76        45556789999999999999999999999999874     2334443   34444455444444333 34


Q ss_pred             HHHHhhhhc
Q psy4385         410 YANMFDKFA  418 (473)
Q Consensus       410 ~~~~f~~~~  418 (473)
                      +++.++...
T Consensus       348 ~q~al~i~~  356 (508)
T KOG1840|consen  348 LQKALKIYL  356 (508)
T ss_pred             HHHHHHHHH
Confidence            555554443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.49  E-value=1.4e-06  Score=80.94  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN-KAAVQKLT  393 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~  393 (473)
                      -..+..|+.+|+.++...+++.|+....+|++.||+++.|-..+|.+++..|+|+.|++.++++++.||+- +.+...|.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999986 56778888


Q ss_pred             HHHHHHHHHHHHH
Q psy4385         394 QTKQKLREQKIKE  406 (473)
Q Consensus       394 ~~~~~~~~~~~~~  406 (473)
                      .|+..+++-.+..
T Consensus       257 ~~Y~~lg~~~~~~  269 (389)
T COG2956         257 ECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHhCCHHHHH
Confidence            8888876655444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.46  E-value=5.3e-07  Score=67.19  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=62.8

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF  355 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~  355 (473)
                      ...++..++|+.|+..+++++               .++|..+.++..+|.|+.++|+|..|+.+++++++.+|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l---------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERAL---------------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH---------------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            456889999999999999999               77778899999999999999999999999999999999998887


Q ss_pred             HHHH
Q psy4385         356 FRRG  359 (473)
Q Consensus       356 ~~~g  359 (473)
                      .-++
T Consensus        67 ~~~a   70 (73)
T PF13371_consen   67 ALRA   70 (73)
T ss_pred             HHHH
Confidence            6554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.46  E-value=1.6e-06  Score=93.74  Aligned_cols=151  Identities=9%  Similarity=-0.015  Sum_probs=108.1

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC------------ChhHH-----HHHH--HHHHHHHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF------------EGEQE-----TERK--KTLTACHLNAAMCL  328 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------~~~~~-----~~~~--~~~~~~~~nla~~~  328 (473)
                      .+...+..+...+++|+|..|+..|+++++..+.....            ..++.     ..+.  +.....+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45577788888999999999999999999877764211            01110     0112  22234444557789


Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      ..+|+|++|++.|+++++.+|+++.+++.++.+|...+++++|+..+.++...+|.+... ..+..+.....+.. .+-.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~  190 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQ  190 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHH
Confidence            999999999999999999999999999988899999999999999999999999986654 33444443322222 2556


Q ss_pred             HHHHHhhhhcCC
Q psy4385         409 VYANMFDKFAKH  420 (473)
Q Consensus       409 ~~~~~f~~~~~~  420 (473)
                      .|++++...+..
T Consensus       191 ~~ekll~~~P~n  202 (822)
T PRK14574        191 ASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhCCCC
Confidence            777777665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.46  E-value=1.8e-06  Score=73.97  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ......+|..++..|+|++|+..|+.++...+.            ..+...+.+++|.+++.+|+|++|+..++. +.-.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            344555666777777777777777777632211            123445666677777777777777777654 2223


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  379 (473)
                      +-.+.++..+|.+|...|++++|+..|++||
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            3344566667777777777777777776664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=3.4e-06  Score=68.98  Aligned_cols=99  Identities=19%  Similarity=0.065  Sum_probs=85.0

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+++.+..+-..|+.++|+..|++++..-..            .+....++.++|.++..+|++++|+..+++++...|
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            35678888999999999999999999953211            234567899999999999999999999999999888


Q ss_pred             C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         350 N---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       350 ~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      +   +......++.++..+|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7   778888899999999999999999988875

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.5e-07  Score=76.25  Aligned_cols=65  Identities=20%  Similarity=0.351  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG  230 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g  230 (473)
                      ...++.|++||.++. +|++||+.     |..|.+|.++   +++||+.||..|..|++..+.|+|..|||...
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~---li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQ---LIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCC---cchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            456889999999999 89999974     8999999998   99999999999999999999999999999743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.41  E-value=2.5e-06  Score=91.52  Aligned_cols=131  Identities=17%  Similarity=0.164  Sum_probs=104.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ...++..+...+...+++++|++....++               ...|....+|+.+|..+++.+++..|...  .++.+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l---------------~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHL---------------KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            45677778888889999999999999999               55666788888888888888777666555  55544


Q ss_pred             CCCC-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNN-------------------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       348 ~p~~-------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      -+.+                   -.|++.+|.||-++|++++|.+.|+++|+++|+|+.+.++++-.+...  ..++...
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~  170 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAIT  170 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHH
Confidence            4444                   489999999999999999999999999999999999999998887766  4455556


Q ss_pred             HHHHHhhhh
Q psy4385         409 VYANMFDKF  417 (473)
Q Consensus       409 ~~~~~f~~~  417 (473)
                      ++++...+.
T Consensus       171 m~~KAV~~~  179 (906)
T PRK14720        171 YLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHH
Confidence            666666553

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.38  E-value=1.3e-06  Score=83.63  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+......+...+++.++...+.++.....             .+.++.++..+|.++.+.|++++|+..+++|++++|+
T Consensus       112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  112 YLLSALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             ------H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            344455567788999999999888763211             2346788999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +..++..++.++...|++++|...+.......|.++..+..++.+...+++..++ ...|.+...
T Consensus       179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A-l~~~~~~~~  242 (280)
T PF13429_consen  179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA-LEYLEKALK  242 (280)
T ss_dssp             -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc-ccccccccc
Confidence            9999999999999999999999999999888899988999999999888765543 345555443

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.35  E-value=1.2e-06  Score=77.37  Aligned_cols=65  Identities=20%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKG  230 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g  230 (473)
                      ...++.|+++|+.+. +|++|++.    |++|.+|.+.   ++++|+.||..|..|++..|.|+|..+||...
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~---lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGS---LISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCc---chHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            456789999999999 89999974    8999999987   99999999999999999999999999998743

>KOG1130|consensus

Probab=98.34  E-value=9e-07  Score=84.54  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=91.7

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ..+.....++-++||.||-.|+|+.|+...+.-+.+....         .-....-.++.|+|+||+-+|+|+.|+++|.
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---------GDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---------hhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            4556677788899999999999999999999888664321         1123346789999999999999999999999


Q ss_pred             HHhhh----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         343 KAIEL----EPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       343 ~al~~----~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +++.+    ...  .+...|.+|.+|.-+.+|..|+.++.+-|.+..+
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87654    322  4567899999999999999999999998887543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.34  E-value=1e-06  Score=67.72  Aligned_cols=76  Identities=25%  Similarity=0.291  Sum_probs=66.7

Q ss_pred             cCChhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         331 LKQAKPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       331 l~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      .++|+.|+..++++++.+|.  +...++++|.||+++|+|++|+..+++ +..+|.+...+..++.|...+++..++.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58899999999999999995  567788999999999999999999999 88999998999999999999888776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.33  E-value=2.2e-06  Score=92.75  Aligned_cols=122  Identities=10%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ...+...|..+...|+|.+|+..|++++               +.+|.++.++..++..+..++++++|+..+.+++..+
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL---------------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSL---------------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence            3445556778889999999999999999               6677788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      |.+... ..++.++...+++.+|+..|+++++++|++.++...+-.+....+....+.
T Consensus       167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            985544 445666666788877999999999999999999888887777665554443

>KOG2002|consensus

Probab=98.33  E-value=3.4e-06  Score=88.62  Aligned_cols=136  Identities=20%  Similarity=0.211  Sum_probs=114.7

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ..-.++.++.+|..+..+|+|++|..+|.+++...+..              ..-.++.+|+.|++.|+++.|+.++.++
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--------------~~l~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--------------FVLPLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--------------ccccccchhHHHHHhchHHHHHHHHHHH
Confidence            34557789999999999999999999999999554431              2567889999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLN----EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +...|++.....-+|..|...+    .-+.|...+.++++..|.+..++-.++.++........  -..|.++...
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s--L~~~~~A~d~  442 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS--LDAYGNALDI  442 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH--HHHHHHHHHH
Confidence            9999999999999999999886    67899999999999999999999999988866533332  4455555433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.30  E-value=1.2e-05  Score=75.51  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHH-HHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy4385         318 TACHLNAAMCL-LKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQ  390 (473)
Q Consensus       318 ~~~~~nla~~~-~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~  390 (473)
                      ....++.|..+ ++.++|++|+..|+..+...|++   +.++|.+|.+|+..|+|++|+..|++++...|++   .+++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45677888876 66799999999999999999998   4799999999999999999999999999999986   45666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch
Q psy4385         391 KLTQTKQKLREQKIKEKQVYANMFDKFAKHDTE  423 (473)
Q Consensus       391 ~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~  423 (473)
                      .++.+...++ ..+..++.|+++.....+....
T Consensus       222 klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHH
Confidence            6677776553 3345555677666665554433

>KOG2076|consensus

Probab=98.29  E-value=9.5e-06  Score=84.73  Aligned_cols=103  Identities=19%  Similarity=0.187  Sum_probs=96.5

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      +....+++.+|..|-++|+..+|...+-.|.               .++|.+...|..+|....++|++.+|+-+|++||
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---------------HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI  234 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---------------HLNPKDYELWKRLADLSEQLGNINQARYCYSRAI  234 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHH---------------hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            3456789999999999999999999999988               6666677899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      +.+|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus       235 ~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  235 QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.29  E-value=4.4e-06  Score=82.23  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHH---HHHHHHHHHHHHcCChhHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT---ACHLNAAMCLLKLKQAKPAKD  339 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~kl~~~~~A~~  339 (473)
                      ...+..+..+.++|.+|++.|+|++|+..|++||               +++|.+.   .+|+|+|.||.++|++++|+.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---------------eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla  133 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL---------------ELNPNPDEAQAAYYNKACCHAYREEGKKAAD  133 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3456678899999999999999999999999999               5555555   459999999999999999999


Q ss_pred             HHHHHhhhC
Q psy4385         340 QCDKAIELE  348 (473)
Q Consensus       340 ~~~~al~~~  348 (473)
                      ++.+|+++.
T Consensus       134 ~LrrALels  142 (453)
T PLN03098        134 CLRTALRDY  142 (453)
T ss_pred             HHHHHHHhc
Confidence            999999983

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.28  E-value=5.8e-06  Score=81.10  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=99.3

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +--.|..+++.++..+|++.+++++               .++|....+..|+|.++++.|++.+|+...+..+.-+|++
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal---------------~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKAL---------------ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH---------------hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            3346778899999999999999999               5566678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +..|..++++|..+|+-.+|...+-..+.+.-.-..+...+....++.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999888888877667766666665444

>KOG4648|consensus

Probab=98.27  E-value=1.7e-06  Score=80.88  Aligned_cols=93  Identities=20%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +-..|+.|+++|.|++||++|.+++.++|.|+..+-+|+.||+++..|..|..++..|+.||-....++...+.++..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999999999999999999999999877777777777777665


Q ss_pred             HHHHHHHHHHHHHh
Q psy4385         401 EQKIKEKQVYANMF  414 (473)
Q Consensus       401 ~~~~~~k~~~~~~f  414 (473)
                      ...++ ++-|...+
T Consensus       180 ~~~EA-KkD~E~vL  192 (536)
T KOG4648|consen  180 NNMEA-KKDCETVL  192 (536)
T ss_pred             hHHHH-HHhHHHHH
Confidence            54433 33444444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.1e-05  Score=72.11  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE---PELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~---~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ..+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++...+   -.+|...|++++.+||+|..+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            66788899999999999999999999999999999999999999999998877643   578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Q psy4385         389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEK  429 (473)
Q Consensus       389 ~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~~  429 (473)
                      ...|+......+++.+ .-..++.|++.+...++...--++
T Consensus       230 l~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         230 LSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCchHHHHHH
Confidence            9999998877766554 445889999888877766655544

>KOG4162|consensus

Probab=98.21  E-value=1.1e-05  Score=82.84  Aligned_cols=118  Identities=21%  Similarity=0.189  Sum_probs=103.9

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +...+..+.+.++-++|..+..+|-               .+.+..+..|+.+|.++...|++.+|.+.|..|+.+||++
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~---------------~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEAS---------------KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHH---------------hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence            3344555566677777888888887               6678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEK--DFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      +.+.--+|.++.+.|+-.-|..  .+..|+++||.|.++|+.|+.+.++++...+
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            9999999999999998877777  9999999999999999999999988876653

>TIGR00540 hemY_coli hemY protein

Probab=98.21  E-value=1.1e-05  Score=81.54  Aligned_cols=144  Identities=10%  Similarity=0.036  Sum_probs=108.8

Q ss_pred             ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHH--HHHHHHHHHHcCCh
Q psy4385         257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC--HLNAAMCLLKLKQA  334 (473)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~kl~~~  334 (473)
                      .|...+....+....+...+..+...|+++.|....+++++..+..               ...  ..-+....+..++.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------------~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------------RAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------------ccchhHHHHHhhhcCCCCh
Confidence            3443444444466777888999999999999999999999654432               211  12233334456888


Q ss_pred             hHHHHHHHHHhhhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         335 KPAKDQCDKAIELEPNNE--KAFFRRGNAYLDLNEPELAEKDFQ--KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY  410 (473)
Q Consensus       335 ~~A~~~~~~al~~~p~~~--ka~~~~g~a~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  410 (473)
                      ..++..++++++.+|+++  ..+..+|.++++.|+|++|..+|+  ++++.+|++.. ...++.+..++++..+ .++.|
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~-A~~~~  393 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE-AAAMR  393 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH-HHHHH
Confidence            999999999999999999  888899999999999999999999  68889998766 5588999888866444 45577


Q ss_pred             HHHhhhh
Q psy4385         411 ANMFDKF  417 (473)
Q Consensus       411 ~~~f~~~  417 (473)
                      ++.+.-+
T Consensus       394 ~~~l~~~  400 (409)
T TIGR00540       394 QDSLGLM  400 (409)
T ss_pred             HHHHHHH
Confidence            7655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.20  E-value=2.4e-05  Score=64.01  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN---NKAAVQKL  392 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l  392 (473)
                      .+++++|.++-.+|+.++|+..|.+++......   ..++..+|.+|..+|++++|+..|++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999986544   579999999999999999999999999999888   77777777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4385         393 TQTKQKLREQKIKEKQV  409 (473)
Q Consensus       393 ~~~~~~~~~~~~~~k~~  409 (473)
                      ..+...+++.++.-...
T Consensus        82 Al~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHHCCCHHHHHHHH
Confidence            87777776666655443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.20  E-value=2.3e-06  Score=53.21  Aligned_cols=33  Identities=39%  Similarity=0.764  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      ++|+++|.+|..+++|++|+.+|++|++++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            566677777777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3060|consensus

Probab=98.18  E-value=6.1e-05  Score=68.07  Aligned_cols=131  Identities=16%  Similarity=0.107  Sum_probs=77.3

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------------CChhHHH------HHHHHHHHHHHHHHHHHHHc
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------------FEGEQET------ERKKTLTACHLNAAMCLLKL  331 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~------~~~~~~~~~~~nla~~~~kl  331 (473)
                      ..+-.|..+-..|+|++|+..|...+.-.+.+..             .+.+-..      +.-+.+..+|..+|..|+.+
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            4445566777889999999999998844332110             0001001      11223455666666666666


Q ss_pred             CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      ++|++|+-++++++-+.|.|+-.+-|+|.+++-+|   +++-|.++|.++++++|.+..++..+-.|...+.+
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666665554   34556666666666666555555555555554433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.17  E-value=1.5e-05  Score=76.37  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=88.6

Q ss_pred             HHhhHHHHhhcchhhhc-ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         266 LEQGKLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ...+..+.+.|..+... ++++.|+..|++|+.++...         ........++.++|.++.++++|++|+..|+++
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---------GSPHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34578888999999998 99999999999999887643         223345678899999999999999999999999


Q ss_pred             hhhCCC------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         345 IELEPN------NEK-AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       345 l~~~p~------~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      ....-+      +++ .+++.+.|++..|++..|...|++....+|.-.
T Consensus       182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            875322      233 456888999999999999999999999999653

>KOG1128|consensus

Probab=98.15  E-value=8.3e-06  Score=83.41  Aligned_cols=94  Identities=21%  Similarity=0.352  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      +..++.+...+|...+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.++..++|++..+++++.
T Consensus       481 n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls  560 (777)
T KOG1128|consen  481 NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS  560 (777)
T ss_pred             hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence            34455566667777777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4385         394 QTKQKLREQKIKEK  407 (473)
Q Consensus       394 ~~~~~~~~~~~~~k  407 (473)
                      ..+.++++..++-+
T Consensus       561 ~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  561 TAYIRLKKKKRAFR  574 (777)
T ss_pred             HHHHHHhhhHHHHH
Confidence            99888766554433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.14  E-value=7.9e-05  Score=63.69  Aligned_cols=132  Identities=15%  Similarity=0.079  Sum_probs=97.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+...+......+..+++..+...+.+.+.-.+.            .+....+.+.+|.+++..|+|++|+..++.++.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~   76 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALA   76 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34555666666666788888888878877754332            224467888999999999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYAN  412 (473)
Q Consensus       347 ~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  412 (473)
                      ..|+.   ..+.++++.+++..|+|++|+..+..+ .-.+-.+.+...++.+....++..+ .+..|++
T Consensus        77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~-A~~~y~~  143 (145)
T PF09976_consen   77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE-ARAAYQK  143 (145)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Confidence            87664   468899999999999999999999763 2233345667778888877655443 3334443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.14  E-value=2e-06  Score=53.41  Aligned_cols=34  Identities=41%  Similarity=0.493  Sum_probs=31.6

Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK  373 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~  373 (473)
                      .|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999963

>KOG1174|consensus

Probab=98.14  E-value=3e-05  Score=74.45  Aligned_cols=128  Identities=15%  Similarity=0.060  Sum_probs=95.9

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh-------
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA-------  334 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~-------  334 (473)
                      +........++.-.|+.+...++.++|+-.|+.|+.+.               |....+|-.+-.||+..+.+       
T Consensus       327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---------------p~rL~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---------------PYRLEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---------------hhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence            33344566778889999999999999999999999544               44455555555555544433       


Q ss_pred             -----------------------------hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         335 -----------------------------KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       335 -----------------------------~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                                                   ++|...++++|.++|...+|...++..+..-|.+.+++..++++|...|+.
T Consensus       392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~  471 (564)
T KOG1174|consen  392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV  471 (564)
T ss_pred             HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence                                         567777777788888889999999999999999999999999999988775


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy4385         386 KAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       386 ~~~~~~l~~~~~~~~~~~~~  405 (473)
                       ..+..|+.+........+.
T Consensus       472 -~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  472 -NLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             -HHHHHHHHHHHHhhhHHHH
Confidence             4677777776665444433

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=5.2e-05  Score=76.71  Aligned_cols=124  Identities=16%  Similarity=0.139  Sum_probs=95.1

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      +...+......|...+..|+|..|.+...++.+..+               .....+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~---------------~~~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAA---------------EPVLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445677777889999999999999999999885433               23445566677788888888888888888


Q ss_pred             hhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       345 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      .+..|++. .+...++..++..|+++.|+..+++.++..|+++.++..+..++...++..
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            88777764 344456888888888888888888888888888888777777776665554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=6.6e-05  Score=64.65  Aligned_cols=140  Identities=12%  Similarity=0.127  Sum_probs=109.8

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ......+|+.+...|+|.+|...|++++.-+              -......++.+|++++..+++..|....+++.+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~--------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGI--------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            3455678999999999999999999999422              22346788899999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchH
Q psy4385         349 PN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEK  424 (473)
Q Consensus       349 p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~  424 (473)
                      |.  .+....-.|.+|..+|.+++|...|+.++...|. ..+.........++.... ..+..|..+++.+.....--
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~-ea~aq~~~v~d~~~r~~~H~  230 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR-EANAQYVAVVDTAKRSRPHY  230 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHhcchhH
Confidence            85  5677888899999999999999999999999987 555555565555554333 44556677777665544333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.13  E-value=1.2e-05  Score=79.67  Aligned_cols=100  Identities=12%  Similarity=0.004  Sum_probs=86.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ...+...|..+...|++.+|+..|++++               .+.|.+..++..+|.+++..|++++|+..+.+++...
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al---------------~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRAL---------------ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            4455677888999999999999999999               5555667889999999999999999999999999988


Q ss_pred             CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         349 PNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       349 p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      |.++    ..|+.+|.++..+|++++|+..|++++...|
T Consensus       179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7433    4567899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173|consensus

Probab=98.12  E-value=1.2e-05  Score=80.01  Aligned_cols=134  Identities=20%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..|...|--|+-.+++.+|.++|.+|.               .+++....+|...|..+.-.++.++|+.+|..|
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat---------------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA  372 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKAT---------------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA  372 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh---------------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence            34556678888999999999999999999999               778888999999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      -++-|......+.+|.=|..+++++-|...|..|+.+.|+++-+..+++.+.-..+.+.++.+ .+++.+
T Consensus       373 arl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l  441 (611)
T KOG1173|consen  373 ARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK-YFQKAL  441 (611)
T ss_pred             HHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH-HHHHHH
Confidence            999999989999999999999999999999999999999999999999988776655554443 444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.11  E-value=8.4e-05  Score=74.89  Aligned_cols=124  Identities=14%  Similarity=0.135  Sum_probs=97.6

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHH-HHHHHHcCChhHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA-AMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~kl~~~~~A~~~~~~  343 (473)
                      +...+......|...+..|+|..|.+...++-...+                .+.+++.+ |....++|+++.|..++.+
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~----------------~p~l~~llaA~aA~~~g~~~~A~~~l~~  143 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE----------------QPVVNYLLAAEAAQQRGDEARANQHLER  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc----------------chHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            445677778889999999999999977776653211                13333444 5555999999999999999


Q ss_pred             HhhhCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         344 AIELEPNNEKA-FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       344 al~~~p~~~ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      +.+.+|++.-+ ....+..+...|+++.|+..++++++.+|+|+.+...+..++...++..+
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999988543 44668999999999999999999999999999999998888877654443

>KOG1156|consensus

Probab=98.11  E-value=1.5e-05  Score=80.45  Aligned_cols=118  Identities=12%  Similarity=0.140  Sum_probs=94.9

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+.......|..++|...+...+..+.               -.|.....+--.|..+..+|+-++|...+..++..|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~---------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK---------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH---------------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            444555667888888888888888873               34445556667788888889999999999999998888


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      ..-+|.-+|..+....+|++|+++|+.||.++|+|..+++-|+.+..+++...
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            88889999999988899999999999999999999888888888877776554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.10  E-value=0.00011  Score=62.83  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      .+...|......++...++..+.+++.+......       +.......+......+...++..+...|+++.|+..|.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3444566666778999999999999987654221       223455677888889999999999999999999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ++.++|.+..+|..+-.+|...|++.+|++.|.++.+
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.10  E-value=6.8e-05  Score=63.97  Aligned_cols=94  Identities=9%  Similarity=-0.081  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      +.+......+..|.-++..|++++|...|.-+..+||.|++.++.+|.|+..+++|++|+..|..|..++++|+......
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34445667778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4385         393 TQTKQKLREQKIKE  406 (473)
Q Consensus       393 ~~~~~~~~~~~~~~  406 (473)
                      +.|...+++...+.
T Consensus       112 gqC~l~l~~~~~A~  125 (165)
T PRK15331        112 GQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHHHHhCCHHHHH
Confidence            99998886555443

>KOG3060|consensus

Probab=98.09  E-value=3.8e-05  Score=69.34  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDK  343 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~  343 (473)
                      ...+++.+++..|+..++|.+|.-+|++.+               -++|.++.++..+|.+++-+|   ++.-|..+|.+
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~l---------------l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELL---------------LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH---------------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456677888888888888888888888888               667788888888888877766   67778888888


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcC
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLN  366 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg  366 (473)
                      +++++|.+..++|-+..|...+-
T Consensus       217 alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  217 ALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHhChHhHHHHHHHHHHHHHHH
Confidence            88888888888887766655443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.09  E-value=7.1e-06  Score=84.61  Aligned_cols=71  Identities=20%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      ..+.+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|++++|.++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            3456788889999999999999999999999999 5789999999999999999999999999999999874

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.05  E-value=5.7e-05  Score=78.03  Aligned_cols=130  Identities=10%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             hHHHHhhcchhhhc---ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHH
Q psy4385         269 GKLLKERGTTYFKQ---DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ--------AKPA  337 (473)
Q Consensus       269 a~~~~~~G~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--------~~~A  337 (473)
                      |-.++-+|..++.+   +++..|+.+|++|+               +++|.++.+|--++.||.....        ...|
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---------------~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a  403 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---------------KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAAL  403 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            34455566666544   44889999999999               7788888899888888866532        3455


Q ss_pred             HHHHHHHhhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         338 KDQCDKAIEL--EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       338 ~~~~~~al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      .....+++.+  +|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++.++...++..++. ..|.+.|.
T Consensus       404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~  481 (517)
T PRK10153        404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFN  481 (517)
T ss_pred             HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence            5666666664  788889999999999999999999999999999999 4788999999988877666554 35555553

>PRK11906 transcriptional regulator; Provisional

Probab=98.05  E-value=3.9e-05  Score=75.80  Aligned_cols=119  Identities=11%  Similarity=0.001  Sum_probs=94.2

Q ss_pred             Hhhcchhhhcc---cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc---------CChhHHHHH
Q psy4385         273 KERGTTYFKQD---KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL---------KQAKPAKDQ  340 (473)
Q Consensus       273 ~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl---------~~~~~A~~~  340 (473)
                      +.+|..++.++   ....|+..|.+|+..-            .++|..+.+|.-+|.||+.+         ..-.+|...
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~------------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~  326 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS------------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL  326 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcc------------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            34444443333   4577888899998321            44667788999999998765         134578889


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      ..+|+++||.++.|++.+|.++...++++.|...|++|+.++|+...++..++.+...-++..
T Consensus       327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999999998888765544433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.05  E-value=1e-05  Score=53.62  Aligned_cols=41  Identities=29%  Similarity=0.538  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555666666666666666666666666666666555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.03  E-value=1.1e-05  Score=50.09  Aligned_cols=34  Identities=41%  Similarity=0.669  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      +++|+.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.03  E-value=7.8e-06  Score=50.79  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +.+|+++|.+|+.+++|++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642|consensus

Probab=98.03  E-value=1.2e-05  Score=71.82  Aligned_cols=85  Identities=25%  Similarity=0.180  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      --|.+++.-+.|..|+.+|.+||.++|..+..|-+++.||+++.+|+.+..++.+|++++|+...+++.|+.+....+.+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            44677778889999999999999999999999999999999999999999999999999999999999999988777666


Q ss_pred             HHHHH
Q psy4385         403 KIKEK  407 (473)
Q Consensus       403 ~~~~k  407 (473)
                      .+.-+
T Consensus        95 ~eaI~   99 (284)
T KOG4642|consen   95 DEAIK   99 (284)
T ss_pred             cHHHH
Confidence            55433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.02  E-value=2.1e-05  Score=77.83  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      .++++.|+..+++....               +   +....-+|.+++..++..+|++...++|...|.+...+.--+..
T Consensus       182 t~~~~~ai~lle~L~~~---------------~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRER---------------D---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhc---------------C---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35577777777765522               1   22344567777777777777777777777777777777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       362 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      ++..++|+.|+...++|..+.|++-..|..|+.++..+++.+.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            777777777777777777777777777777777777776666554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.02  E-value=4.1e-05  Score=75.87  Aligned_cols=143  Identities=9%  Similarity=-0.065  Sum_probs=107.9

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC-------------C---hhHHH------HHHHHHHHHHHHHHHH
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF-------------E---GEQET------ERKKTLTACHLNAAMC  327 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~---~~~~~------~~~~~~~~~~~nla~~  327 (473)
                      +.....+..++..|++++|...+++++...+.+...             .   .....      ...+.....+.++|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            345567888999999999999999999776543210             0   00001      1234445677789999


Q ss_pred             HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHH
Q psy4385         328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA----VQKLTQTKQKLREQK  403 (473)
Q Consensus       328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~----~~~l~~~~~~~~~~~  403 (473)
                      +..+|++++|+..++++++++|+++.++..+|.++...|++++|+..+.+++...|.+...    +..++.+....++..
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999999999999999999999999999999999998864432    335677766665554


Q ss_pred             HHHHHHHHHH
Q psy4385         404 IKEKQVYANM  413 (473)
Q Consensus       404 ~~~k~~~~~~  413 (473)
                      +.. ..|.++
T Consensus       204 ~A~-~~~~~~  212 (355)
T cd05804         204 AAL-AIYDTH  212 (355)
T ss_pred             HHH-HHHHHH
Confidence            443 355554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.00  E-value=0.00012  Score=67.53  Aligned_cols=107  Identities=21%  Similarity=0.235  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLTQ  394 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~  394 (473)
                      .++.|.-+++.|+|..|...|..=++.-|+..   .|+|.+|.+++.+|+|++|...|..+.+-.|+++   ++...|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            78999999999999999999999999998864   7999999999999999999999999999998875   55667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Q psy4385         395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEE  428 (473)
Q Consensus       395 ~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~  428 (473)
                      +...+++ .+..+..++.+-++....+.....+.
T Consensus       224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            7766643 34555677777777666655544443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=1.8e-05  Score=52.44  Aligned_cols=43  Identities=23%  Similarity=0.307  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      .+++.+|.+|..+|++++|++.++++++.+|+|+.+++.+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4688999999999999999999999999999999999998863

>KOG1129|consensus

Probab=97.95  E-value=2.2e-05  Score=73.26  Aligned_cols=86  Identities=17%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      ..|.+...++..|.+|-.+++++.|++.|..+++++|.|+.+.-..|.-|+--++.+-|+.+|++.|++.-.+++...++
T Consensus       285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni  364 (478)
T KOG1129|consen  285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI  364 (478)
T ss_pred             cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence            34556778888888888889999999999999988888888887888888888888888888888888887888887777


Q ss_pred             HHHHHH
Q psy4385         393 TQTKQK  398 (473)
Q Consensus       393 ~~~~~~  398 (473)
                      +.|..-
T Consensus       365 gLCC~y  370 (478)
T KOG1129|consen  365 GLCCLY  370 (478)
T ss_pred             HHHHHh
Confidence            777543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.95  E-value=8.4e-05  Score=74.88  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=103.0

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      +.........+...+..+...|+++.|.....++++.-.                +..+..-.+  ++..+++++++..+
T Consensus       256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~----------------~~~l~~l~~--~l~~~~~~~al~~~  317 (398)
T PRK10747        256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY----------------DERLVLLIP--RLKTNNPEQLEKVL  317 (398)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------CHHHHHHHh--hccCCChHHHHHHH
Confidence            344445666777789999999999999999999984211                122222222  23559999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      ++.++.+|+++..++.+|.+++..++|++|...|++++++.|++.. +..+..+..++++..+. .+.|++.+
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l  388 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGL  388 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence            9999999999999999999999999999999999999999999754 45788888877665544 44565544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.94  E-value=5.8e-05  Score=81.32  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--  347 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--  347 (473)
                      .++..+|.+|-+.|++++|...|++++               +++|.++.+++|+|..|... +.++|+.++.+|+..  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L---------------~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLV---------------KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH---------------hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            478889999999999999999999999               55677888899999888888 888888888888743  


Q ss_pred             ------------------CCCCHHHHHH--------HH------------HHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         348 ------------------EPNNEKAFFR--------RG------------NAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       348 ------------------~p~~~ka~~~--------~g------------~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                                        +|++...+++        ++            .+|....+|++++..|+.+|+++|.|..++
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence                              5665544322        24            788889999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy4385         390 QKLTQTKQ  397 (473)
Q Consensus       390 ~~l~~~~~  397 (473)
                      ..|..|+.
T Consensus       261 ~~l~~~y~  268 (906)
T PRK14720        261 EELIRFYK  268 (906)
T ss_pred             HHHHHHHH
Confidence            99999986

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.91  E-value=6.4e-05  Score=51.51  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ..+|.+|.+++++|+|++|+.+++.+|+++|+|.++......+..++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999887777666554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.89  E-value=0.00057  Score=61.98  Aligned_cols=110  Identities=17%  Similarity=0.212  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA---AVQ  390 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~---~~~  390 (473)
                      ....++..|..++..|+|.+|+..+++++...|..   ..|.+.+|.+++..++|++|+..|++.++..|+++.   +..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            35678899999999999999999999999998764   489999999999999999999999999999999864   455


Q ss_pred             HHHHHHHHHHHHH----------HHHHHHHHHHhhhhcCCCchHHH
Q psy4385         391 KLTQTKQKLREQK----------IKEKQVYANMFDKFAKHDTEKEE  426 (473)
Q Consensus       391 ~l~~~~~~~~~~~----------~~~k~~~~~~f~~~~~~~~~~~~  426 (473)
                      .++.+...+....          ......++.+..+.++..-....
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A  129 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA  129 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence            5666544432221          23344666666666665544333

>KOG1174|consensus

Probab=97.88  E-value=0.00011  Score=70.63  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh------------hHHHHH-------HHHHHHHHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG------------EQETER-------KKTLTACHLNAAMCL  328 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~nla~~~  328 (473)
                      ....+..+|..+|..|++..|+..|+++..+.++.-..-+            +....+       ......-|+--+...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            3456778999999999999999999999877665222111            111110       111122344444556


Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      +..++|..|+.+..++|+.+|.++.+|.-.|.++..+++.++|+-.|+.|..+.|..-..+..|-.++-..+..+++
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            67889999999999999999999999999999999999999999999999999999988888887777665555443

>KOG1127|consensus

Probab=97.87  E-value=5.2e-05  Score=80.07  Aligned_cols=138  Identities=17%  Similarity=0.109  Sum_probs=107.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCC---------hhHHHH------------HHHHHHHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE---------GEQETE------------RKKTLTACHLNAAM  326 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~nla~  326 (473)
                      .+..+--+|..|..--+..+|..+|.+|..+...+....         .++++.            ........|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            344555677777666688899999999998776533211         011111            11122234556899


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      .|++.+++.+|+.+++.|++.+|.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-.+...+.+...++++.+.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988888777777777777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00027  Score=66.06  Aligned_cols=107  Identities=13%  Similarity=0.166  Sum_probs=93.4

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ..+.|.-+-+++..+....+.+.|.....+|+               +.+|..+.+-.-+|.+++..|+|..|++.++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl---------------qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKAL---------------QADKKCVRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---------------hhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence            44567777788888888888888888888888               667777888889999999999999999999999


Q ss_pred             hhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         345 IELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       345 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      ++.||... ..+-.+..||..+|+.++.+..+.++.+..+...
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            99999865 6778899999999999999999999999887654

>KOG2003|consensus

Probab=97.86  E-value=0.00027  Score=68.69  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=99.7

Q ss_pred             cccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy4385         250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL  329 (473)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~  329 (473)
                      +++++.+.+.-.......-.+++++.|..+-..|+.++|+.+|-+.-.+               -..++..+..+|..|-
T Consensus       505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i---------------l~nn~evl~qianiye  569 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------LLNNAEVLVQIANIYE  569 (840)
T ss_pred             cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHH
Confidence            3444444443333334455678999999999999999999999887733               3345667777777777


Q ss_pred             HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc----------------------------------CCHHHHHHHH
Q psy4385         330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL----------------------------------NEPELAEKDF  375 (473)
Q Consensus       330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----------------------------------g~~~~A~~~~  375 (473)
                      .+.+..+||+.+-++..+-|+++..+..+|..|-+-                                  .-++.|+.+|
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~  649 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF  649 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            777777777777777777666666555555555444                                  4446677777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         376 QKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       376 ~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      ++|.-+.|+...-..-++.|.++-+.+. +.-..|+.+-.++.
T Consensus       650 ekaaliqp~~~kwqlmiasc~rrsgnyq-ka~d~yk~~hrkfp  691 (840)
T KOG2003|consen  650 EKAALIQPNQSKWQLMIASCFRRSGNYQ-KAFDLYKDIHRKFP  691 (840)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhCc
Confidence            7777777766555555666665554443 33446666665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.86  E-value=0.00073  Score=61.80  Aligned_cols=120  Identities=20%  Similarity=0.268  Sum_probs=94.2

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      -+..+++.|...++.|+|.+|+..|+....-.+.            .|....+.+.++.++++.++|+.|+...++=+.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3678999999999999999999999998754443            2234567889999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHH
Q psy4385         348 EPNNE---KAFFRRGNAYLDLNE--------PELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKL  399 (473)
Q Consensus       348 ~p~~~---ka~~~~g~a~~~lg~--------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~  399 (473)
                      .|.++   -++|-+|.+++..=+        -.+|...|+..+..-|+.+   ++...+..+..++
T Consensus       101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L  166 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL  166 (254)
T ss_pred             CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence            98765   578899999876422        3578899999999999975   3444444444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.84  E-value=0.00013  Score=74.97  Aligned_cols=89  Identities=15%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ...+++.+|++|..+|++++|+.++++||+..|..+..|+.+|.+|...|++.+|...++.|-.+|+.|+-+........
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999887665555544


Q ss_pred             HHHHHHHHH
Q psy4385         397 QKLREQKIK  405 (473)
Q Consensus       397 ~~~~~~~~~  405 (473)
                      -+-++.+++
T Consensus       273 LRa~~~e~A  281 (517)
T PF12569_consen  273 LRAGRIEEA  281 (517)
T ss_pred             HHCCCHHHH
Confidence            443333333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.84  E-value=0.0002  Score=59.75  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ...+++.|...++.|+|..|++.++.+...-|-.   ..|.+.++.+|+..++|++|+..+++.++++|.++.+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            4567889999999999999999999999988764   5899999999999999999999999999999999765

>KOG4555|consensus

Probab=97.84  E-value=0.00023  Score=57.71  Aligned_cols=78  Identities=21%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHH
Q psy4385         323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK----AAVQKLTQTKQK  398 (473)
Q Consensus       323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~----~~~~~l~~~~~~  398 (473)
                      ..|......|+.+.|++.|.++|.+-|.++.+|.+|++++.-.|+.++|+.++.+|+++.....    .++.+.+.++..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999999999999999999999999999999999999975432    234455555555


Q ss_pred             HH
Q psy4385         399 LR  400 (473)
Q Consensus       399 ~~  400 (473)
                      +.
T Consensus       128 ~g  129 (175)
T KOG4555|consen  128 LG  129 (175)
T ss_pred             hC
Confidence            43

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.83  E-value=0.00058  Score=63.65  Aligned_cols=79  Identities=15%  Similarity=0.067  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA---VQK  391 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~---~~~  391 (473)
                      +..++..|..++..|+|++|+..+++++...|....   +.+.+|.+|+++++|++|+..+++.++++|+++.+   ...
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            455778899999999999999999999999998764   45999999999999999999999999999998654   455


Q ss_pred             HHHHH
Q psy4385         392 LTQTK  396 (473)
Q Consensus       392 l~~~~  396 (473)
                      ++.+.
T Consensus       112 ~g~~~  116 (243)
T PRK10866        112 RGLTN  116 (243)
T ss_pred             HHHhh
Confidence            55543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=8.6e-05  Score=71.04  Aligned_cols=111  Identities=18%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             chhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHhhhCCCCHHH
Q psy4385         277 TTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       277 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      ..+.+.++++.|.+.++..-++.+.               .....+-.|.+.+..|  .+..|.-.|++.....+.++..
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD---------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~  203 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDED---------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL  203 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCC---------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCc---------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH
Confidence            3566778888888887776644321               1222223333444445  6999999999988888889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      +..++.|++.+|+|++|...+..|+..+|+++++..++..+...+++.
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999988887776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.80  E-value=0.00072  Score=53.80  Aligned_cols=103  Identities=19%  Similarity=0.202  Sum_probs=78.7

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-------
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-------  347 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-------  347 (473)
                      .|...+..|-|.+|...|.+|.......+   .++.-.-....+-||--|+-++..+|+|++++...+++|..       
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            45566788999999999999997765432   22323445567889999999999999999999999999843       


Q ss_pred             CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         348 EPN----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       348 ~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      +.+    ++.+.|+++.++..+|+.++|+..|+.+-+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            433    567889999999999999999999998854

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK11906 transcriptional regulator; Provisional

Probab=97.80  E-value=9e-05  Score=73.25  Aligned_cols=91  Identities=13%  Similarity=0.007  Sum_probs=82.0

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      ...-.+|.+.-.+|+               ++++.++.++..+|.+....++++.|+..+++|+.++|+.+.+||.+|..
T Consensus       317 ~~~~~~a~~~A~rAv---------------eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        317 ELAAQKALELLDYVS---------------DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             hHHHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            344566777777777               67778899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         362 YLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       362 ~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      +...|+.++|++.+++|++++|.-..
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCchhhH
Confidence            99999999999999999999997543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=5.1e-05  Score=46.91  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +.+++++|.+++++|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.78  E-value=0.00016  Score=69.60  Aligned_cols=111  Identities=12%  Similarity=0.247  Sum_probs=90.4

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF---EGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ......+..+|++++|..|+-.|..|+.++......   .......+.....-+...+..||+++++.+.|+.+.-+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            344456778899999999999999999988763221   12223344555566778999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ++|.+..-+++.|.|...+.+|.+|.+.+-.|.-
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987766643

>KOG0551|consensus

Probab=97.78  E-value=0.00027  Score=66.34  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      .+.-|---|+-|++.++|..|+..|++.|...-.    |+..|.||+.|.+.+|+|..|+.++.+|+.++|.+..++..-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            3455667789999999999999999999987533    556788999999999999999999999999999999988888


Q ss_pred             HHHHHHHHH
Q psy4385         393 TQTKQKLRE  401 (473)
Q Consensus       393 ~~~~~~~~~  401 (473)
                      +.|.-.+..
T Consensus       160 Akc~~eLe~  168 (390)
T KOG0551|consen  160 AKCLLELER  168 (390)
T ss_pred             hHHHHHHHH
Confidence            888777765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.77  E-value=0.00037  Score=69.05  Aligned_cols=68  Identities=21%  Similarity=0.226  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .|....++...|..+++.++|+.|+..+++++.+.|++.++|+.++.+|..+|+|++|+..+..+--.
T Consensus       230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            44457788889999999999999999999999999999999999999999999999999777654433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4151|consensus

Probab=97.73  E-value=9.3e-05  Score=76.83  Aligned_cols=121  Identities=30%  Similarity=0.457  Sum_probs=106.6

Q ss_pred             CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--CChhHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--KQAKPAK  338 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--~~~~~A~  338 (473)
                      +....+..+...+..||.+|..++|..|.-.|..++.+++.+           +...+.++.|.+.|++.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence            446667788899999999999999999999999999888743           445678899999998775  5999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      ..|+-|+...|...+++++++.+|..++.++-|++++.-....+|.+..+....
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif  167 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIF  167 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence            999999999999999999999999999999999999999999999996655433

>KOG1156|consensus

Probab=97.67  E-value=0.00025  Score=71.92  Aligned_cols=124  Identities=18%  Similarity=0.145  Sum_probs=99.1

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ++..+.+-..|..+...|+-++|...-..+++               .++-...||.-+|..+..-++|++||.+|..||
T Consensus        38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl  102 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL  102 (700)
T ss_pred             CccchhHHhccchhhcccchHHHHHHHHHHhc---------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            45566777788888888999999988888884               344456788888998888889999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      .++|+|...|+-++....++++|+-....-.+.|++.|.+...|..++...-.+..+..
T Consensus       103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen  103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888899999888888888888888887766666555554444433

>KOG1586|consensus

Probab=97.64  E-value=0.0012  Score=59.20  Aligned_cols=121  Identities=22%  Similarity=0.280  Sum_probs=91.3

Q ss_pred             HHHHhhcchhhhc-ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         270 KLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       270 ~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ..+..+|..|-.. .+++.|+.+|++|-.++..+         +....-..+++..|...-.+++|.+|+..|+++....
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344555555444 78999999999999887653         4455566788888888889999999999999998766


Q ss_pred             CCCH------HH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHH
Q psy4385         349 PNNE------KA-FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV--QKLTQTKQKL  399 (473)
Q Consensus       349 p~~~------ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~--~~l~~~~~~~  399 (473)
                      -+|.      |- ++..|.||+...+.-.|...+++..+++|.....+  ..|..+...+
T Consensus       185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai  244 (288)
T KOG1586|consen  185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI  244 (288)
T ss_pred             ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            5543      44 45778999999999999999999999999876543  3444444444

>PRK10941 hypothetical protein; Provisional

Probab=97.63  E-value=0.00069  Score=63.67  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      ......+.|+=.+|++.++|+.|+.+++.++.++|+++.-+.-||.+|.++|.+..|+.+|+..++.+|+++.+..
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3456778899999999999999999999999999999999888999999999999999999999999999987644

>KOG1130|consensus

Probab=97.60  E-value=0.00025  Score=68.30  Aligned_cols=125  Identities=16%  Similarity=0.155  Sum_probs=94.3

Q ss_pred             eccccccccccccCc------hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHH
Q psy4385         248 MNNFEKIKDTWQLNS------DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH  321 (473)
Q Consensus       248 L~~~~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      |.+|+.++.....-.      -.+...-.++-++||++.-.|+|+.|+.+|++++.+....         .-...-+...
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel---------g~r~vEAQsc  278 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL---------GNRTVEAQSC  278 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh---------cchhHHHHHH
Confidence            566766554443322      1222333567789999999999999999999998654321         1123345667


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAIELE------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al~~~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      +.+|+.|.-+.+|.+||.+..+-|.+-      -....+++.+|.+|..+|+.+.|+....+.+++
T Consensus       279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            789999999999999999999877663      235689999999999999999999998888776

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.58  E-value=0.00025  Score=67.95  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=91.1

Q ss_pred             hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      ..-..+..+..-|+.|-..++|.+|...|.+|..+....         .....-...|.+.+.|+.+. ++.+|+.++++
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~   99 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---------GDKFEAAKAYEEAANCYKKG-DPDEAIECYEK   99 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence            334556777778888889999999999999998765431         11233456677777777665 88888888888


Q ss_pred             HhhhC--CC----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         344 AIELE--PN----NEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPN--N----KAAVQKLTQTKQKLREQKIKEKQVY  410 (473)
Q Consensus       344 al~~~--p~----~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~--~----~~~~~~l~~~~~~~~~~~~~~k~~~  410 (473)
                      |+.+-  ..    -.+++.++|.+|... +++++|+..|++|+.+...  .    ......++.+...++++.++ ...|
T Consensus       100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~  178 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIY  178 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence            88762  12    246788888888888 8899999999888887321  1    12344555555555544433 3345


Q ss_pred             HHHhh
Q psy4385         411 ANMFD  415 (473)
Q Consensus       411 ~~~f~  415 (473)
                      .++-.
T Consensus       179 e~~~~  183 (282)
T PF14938_consen  179 EEVAK  183 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.57  E-value=0.00042  Score=59.82  Aligned_cols=69  Identities=25%  Similarity=0.318  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE----------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      |+.|.+.++.+...+|.++.+++|.|-+++.+.+          +++|+.-|+.||.++|+...++..++.++..+...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999999998754          46789999999999999999999999887766553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.55  E-value=0.00012  Score=45.22  Aligned_cols=32  Identities=31%  Similarity=0.622  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      ++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46677777777777777777777777777764

...

>KOG4814|consensus

Probab=97.52  E-value=0.0033  Score=63.85  Aligned_cols=103  Identities=21%  Similarity=0.260  Sum_probs=90.8

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+.+.+..+|+..+|..|++.|...+++++.+         ..+...+....+++.||+++.+.+.|.+++.+|=+.||
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D---------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD---------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            456678999999999999999999999988764         45566799999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .++-.-+..-++...-+.-++|+..+.+....
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99988888888888889999999888777654

>KOG0376|consensus

Probab=97.51  E-value=0.00011  Score=72.40  Aligned_cols=87  Identities=31%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +-+-|..+++-+.|+.|+..|.+||+++|+++..+-+|++++.+.++|-.|+.|+.+|++++|....++...+....++.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34667788899999999999999999999999999999999999999999999999999999998888777777776666


Q ss_pred             HHHHHHH
Q psy4385         401 EQKIKEK  407 (473)
Q Consensus       401 ~~~~~~k  407 (473)
                      +..++-+
T Consensus        87 ~~~~A~~   93 (476)
T KOG0376|consen   87 EFKKALL   93 (476)
T ss_pred             HHHHHHH
Confidence            6555443

>KOG1127|consensus

Probab=97.47  E-value=0.00048  Score=73.06  Aligned_cols=114  Identities=13%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+..+|..+.+.+++..|+..|+-|+               ..+|....+|..+|.+|...|.|..|+..+++|..++|.
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsAL---------------R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSAL---------------RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHh---------------cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            34568999999999999999999999               556677899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +.-+.|..+.....+|+|.+|+..+...+..-..-.....-|+.+..+.
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999999887665556666666665544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.00041  Score=66.35  Aligned_cols=92  Identities=22%  Similarity=0.308  Sum_probs=75.9

Q ss_pred             ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy4385         283 DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAY  362 (473)
Q Consensus       283 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  362 (473)
                      .++..|...|++...-+               +..+.+++.+|.|++.+|+|++|...+.+|+..+|+++.++.++..+.
T Consensus       181 e~~~~A~y~f~El~~~~---------------~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKF---------------GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            46899999999965322               224677889999999999999999999999999999999999999999


Q ss_pred             HhcCCH-HHHHHHHHHHHhcCCCCHHHH
Q psy4385         363 LDLNEP-ELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       363 ~~lg~~-~~A~~~~~~al~l~P~~~~~~  389 (473)
                      ..+|+. +.+.+.+.+....+|+++-+.
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            999998 667788888888999987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495|consensus

Probab=97.44  E-value=0.0015  Score=66.53  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=99.0

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCC---------hhHHHHHHHH---------HHHHHHHHHHHHHHcCChh
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE---------GEQETERKKT---------LTACHLNAAMCLLKLKQAK  335 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~~~~---------~~~~~~nla~~~~kl~~~~  335 (473)
                      ..+..++..|+...|.....+|+...++....+         ..+-+....+         ...+|+.-+....-+++.+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence            345667788888888888888887766522110         0011111222         2345666677777789999


Q ss_pred             HHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       336 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +|++.|+++|+.-|+..|.|..+|+++..+++.+.|...|...++.+|+..-.+..|..+.++..
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999998887664

>KOG0495|consensus

Probab=97.42  E-value=0.0017  Score=66.24  Aligned_cols=130  Identities=11%  Similarity=0.039  Sum_probs=102.4

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      ...+.....++.++|++..++++               +..|....+|+.+|+.+-.+++.+.|...|..-++..|+.+.
T Consensus       656 Ks~~~er~ld~~eeA~rllEe~l---------------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip  720 (913)
T KOG0495|consen  656 KSANLERYLDNVEEALRLLEEAL---------------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP  720 (913)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHH---------------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence            34444455666677777777777               455678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~  419 (473)
                      .|.-++..-...|..-.|...|.++.-.+|.|...+-..-++..+.+..++++. +..+.++.+.+
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~-lmakALQecp~  785 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL-LMAKALQECPS  785 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCc
Confidence            999999999999999999999999999999998877666555555444443333 44455555543

>KOG3785|consensus

Probab=97.35  E-value=0.0012  Score=62.49  Aligned_cols=67  Identities=13%  Similarity=0.104  Sum_probs=36.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      +|-.++..-.|.+||+.|.++|.-+|+..-.-..++.||+++.-|+-+.+.+.-.|+..|+.+-+..
T Consensus       157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N  223 (557)
T KOG3785|consen  157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN  223 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence            3333344444555555555555555555444445555555555555555555555555555554433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.28  E-value=0.001  Score=45.58  Aligned_cols=40  Identities=30%  Similarity=0.479  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      .+++.+|..++++|+|..|..+++.+|+++|+|..|.--.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3678899999999999999999999999999999886443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.27  E-value=0.00083  Score=59.46  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      ..+.+++.+|..|-.+|-+.-|.-+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-++.+.
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            45678889999999999999999999999999999999999999999999999999999999999999987665444

>KOG3364|consensus

Probab=97.27  E-value=0.0024  Score=52.24  Aligned_cols=83  Identities=14%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHcCC---hhHHHHHHHHHhh-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQ---AKPAKDQCDKAIE-LEPN-NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~---~~~A~~~~~~al~-~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .....+|+|.|+.+..+   ..+-+..++..+. -.|. .-..+|.++..++++++|+.|+.++...|+.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45678899999988764   5667888888886 4443 44788999999999999999999999999999999999876


Q ss_pred             HHHHHHHH
Q psy4385         392 LTQTKQKL  399 (473)
Q Consensus       392 l~~~~~~~  399 (473)
                      -..+..++
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            66666554

>KOG3824|consensus

Probab=97.27  E-value=0.0023  Score=59.49  Aligned_cols=78  Identities=26%  Similarity=0.230  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +-.+.|.-..+.|+.++|...+..|+.++|.++.++...|+....-++.-+|-.+|-+||.++|.|.++..+..+..-
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP  195 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence            445666777899999999999999999999999999999999999999999999999999999999998877665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.26  E-value=0.00046  Score=42.58  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      .+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999964

...

>KOG4507|consensus

Probab=97.25  E-value=0.0011  Score=66.61  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=94.5

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      ..|..+.-.|+...|+++..+|+...+..              .-....|+|++.++-+-...|-....++|.+....+-
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~--------------~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl  677 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQ--------------QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL  677 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhh--------------hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence            34556667899999999999999544321              1234679999999999999999999999999988899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      .+|-.|.+|+.+.+.+.|++.|+.|+.++|++..+..-|..+..
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999888877765

>TIGR00115 tig trigger factor

Probab=97.22  E-value=0.0015  Score=66.10  Aligned_cols=83  Identities=24%  Similarity=0.410  Sum_probs=69.6

Q ss_pred             CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS  238 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~  238 (473)
                      .+..|+.|+++|.|..+|..|++   .+..|.+|.+.   +++||+.+|.+|+.|+...|.++....|+....      .
T Consensus       146 ~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~~~lg~~~---~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~------~  216 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFIDGEAFEGGKAENFSLELGSGQ---FIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL------A  216 (408)
T ss_pred             ccCCCCEEEEEEEEEECCEECcCCCCCCeEEEECCCC---cchhHHHHhCCCCCCCeeEEEecCccccCcccC------C
Confidence            46789999999999889999886   47899999887   999999999999999999999986666654433      3


Q ss_pred             CCCceeeeeeccccc
Q psy4385         239 NKPATYTITMNNFEK  253 (473)
Q Consensus       239 ~~~~~y~i~L~~~~~  253 (473)
                      +....|.+.+..+..
T Consensus       217 gk~~~f~v~i~~I~~  231 (408)
T TIGR00115       217 GKEATFKVTVKEVKE  231 (408)
T ss_pred             CCeEEEEEEEEEecc
Confidence            567889999888765

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.14  E-value=0.00022  Score=44.10  Aligned_cols=28  Identities=18%  Similarity=-0.024  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKD  339 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~  339 (473)
                      +++|.++.+|+|+|.+|...|++++|++
T Consensus         7 e~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    7 ELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            8888999999999999999999999863

>KOG2796|consensus

Probab=97.13  E-value=0.0077  Score=55.04  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLT  393 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~  393 (473)
                      +...+.|.+..|+-.++|..|...+++++..||.++.+-.+.|.|++-+|+..+|++.++.++..+|...   ....+|.
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~  330 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLT  330 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHH
Confidence            4557788899999999999999999999999999999999999999999999999999999999999743   3444555


Q ss_pred             HHHH
Q psy4385         394 QTKQ  397 (473)
Q Consensus       394 ~~~~  397 (473)
                      .+++
T Consensus       331 tmyE  334 (366)
T KOG2796|consen  331 TMYE  334 (366)
T ss_pred             HHHH
Confidence            5443

>PRK01490 tig trigger factor; Provisional

Probab=97.05  E-value=0.0027  Score=64.79  Aligned_cols=83  Identities=24%  Similarity=0.405  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS  238 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~  238 (473)
                      .+..|+.|+++|.|..+|..|++   .+..|.+|.+.   +++|++.+|.+|+.|+...+.++....|.....      .
T Consensus       157 ~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~~lg~~~---~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l------a  227 (435)
T PRK01490        157 PAENGDRVTIDFVGSIDGEEFEGGKAEDFSLELGSGR---FIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL------A  227 (435)
T ss_pred             cCCCCCEEEEEEEEEECCEECcCCCCCceEEEEcCCC---cchhHHHHhCCCCCCCeeEEEecCccccccccC------C
Confidence            46889999999999999999876   47899999987   999999999999999999998875555544332      3


Q ss_pred             CCCceeeeeeccccc
Q psy4385         239 NKPATYTITMNNFEK  253 (473)
Q Consensus       239 ~~~~~y~i~L~~~~~  253 (473)
                      +....|.+.+..+..
T Consensus       228 gk~~~f~v~v~~V~~  242 (435)
T PRK01490        228 GKEATFKVTVKEVKE  242 (435)
T ss_pred             CCeEEEEEEEEEecc
Confidence            456789999888765

>KOG3785|consensus

Probab=97.04  E-value=0.0034  Score=59.60  Aligned_cols=86  Identities=13%  Similarity=0.065  Sum_probs=68.6

Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      +..+.+|..|+...+-.+....       +++       ..+-.-+|.|++++|+|++|+..|+-+.+.+..+.+.+.++
T Consensus        32 fls~rDytGAislLefk~~~~~-------EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnL   97 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDR-------EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNL   97 (557)
T ss_pred             HHhcccchhHHHHHHHhhccch-------hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhH
Confidence            4567888889888777763211       111       33455689999999999999999999999888888999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q psy4385         359 GNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       359 g~a~~~lg~~~~A~~~~~~a  378 (473)
                      +.|++-+|.|.+|...-.+|
T Consensus        98 Acc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   98 ACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhhC
Confidence            99999999999998766554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.00  E-value=0.0054  Score=63.26  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ..+++-.+.++...|++++|+++..+.-..-.+....+-.+|.+++.+|++++|...|...+..+|+|..-+..|..+.
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3466677888899999999999999988888888999999999999999999999999999999999999888888876

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.00  E-value=0.0043  Score=56.81  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      -+.-+++-|+..++.|+|++|+..++.+....|..   .++.+.++.++++.++|++|+..+++.+++.|.++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            35678899999999999999999999999988765   4899999999999999999999999999999998765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.99  E-value=0.0011  Score=40.39  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      |+|++|.++..+|++++|+..|++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777776653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.98  E-value=0.024  Score=54.81  Aligned_cols=129  Identities=13%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ..+...+....+.|..-+..|+|.+|.+...++-+.               .+....+|.--|.+.-.+|+++.|-.+..
T Consensus        78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~---------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH---------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc---------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            345567778888899999999999999999987733               23345566667778889999999999999


Q ss_pred             HHhhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         343 KAIELEP-NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       343 ~al~~~p-~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      ++-+..+ ++.-.+..++..+...|++..|...+..+++..|.++.+.....+++...+...+-.
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL  207 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence            9999944 455677889999999999999999999999999999999888888887776665443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.97  E-value=0.023  Score=51.74  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC-------hhHHHHHHHHHhhhC
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ-------AKPAKDQCDKAIELE  348 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-------~~~A~~~~~~al~~~  348 (473)
                      +..+-....++.|+..|.-|+-......        .-....+.+++.+|.+|..+++       +..|++.|.+|++..
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~--------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e  155 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKK--------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE  155 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            3366677789999999999995543211        1122567889999999999988       455666666666554


Q ss_pred             CC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         349 PN------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       349 p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      ..      ....+|.+|..+.++|++++|+..|.+++..--.
T Consensus       156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            22      3578999999999999999999999999975433

>KOG1308|consensus

Probab=96.95  E-value=0.00036  Score=65.82  Aligned_cols=76  Identities=21%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      -.+..|.++.|+++|..++.++|.....|-.|+.++++++....|+++|..|++++|+...-+...+.+...+...
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            3456788999999999999999999999999999999999999999999999999999776555444444444433

>KOG4340|consensus

Probab=96.89  E-value=0.0066  Score=56.42  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=71.2

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG  359 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g  359 (473)
                      .+..+|..||+...--.               +..|.+...++-+|.||+...+|..|..+|++...+.|...+..+..+
T Consensus        21 I~d~ry~DaI~~l~s~~---------------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSEL---------------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHH---------------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            45566777776655444               445556778889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q psy4385         360 NAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       360 ~a~~~lg~~~~A~~~~~~al  379 (473)
                      +.+++.+.|.+|++......
T Consensus        86 QSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhc
Confidence            99999999999998876654

>KOG2376|consensus

Probab=96.83  E-value=0.013  Score=59.33  Aligned_cols=115  Identities=15%  Similarity=0.172  Sum_probs=77.4

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC----------Ch--hH---HHHHHH---HHHHHHHHHHHHHHHcC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF----------EG--EQ---ETERKK---TLTACHLNAAMCLLKLK  332 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~----------~~--~~---~~~~~~---~~~~~~~nla~~~~kl~  332 (473)
                      .+...-|.+-..++|++|.....+.+...+.+...          .+  ++   ..+.++   ......+..|.|+++++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence            44445566778888999998888888765542210          00  11   001111   12223367888999999


Q ss_pred             ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       333 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ..++|+..++   -+++...+.+.-+|+.++++++|++|+..|+..++-+-++.+.
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            9999888887   5666677888888999999999999998888887765554443

>KOG2396|consensus

Probab=96.81  E-value=0.03  Score=55.79  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh
Q psy4385         285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD  364 (473)
Q Consensus       285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  364 (473)
                      ..+-...|++|..-++               .+..+|++......+.+.|.+--..|.++|..+|+++..|...|.=.+.
T Consensus        87 ~~rIv~lyr~at~rf~---------------~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe  151 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFN---------------GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE  151 (568)
T ss_pred             HHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence            3445567888884333               3577888888777788889999999999999999999999999888888


Q ss_pred             cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         365 LNE-PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQV  409 (473)
Q Consensus       365 lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  409 (473)
                      .+. .+.|.+.|.++|+.+|+++.++...-++.-........+++.
T Consensus       152 ~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~  197 (568)
T KOG2396|consen  152 INLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREE  197 (568)
T ss_pred             hccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776 999999999999999999999887766655544444444443

>KOG4340|consensus

Probab=96.78  E-value=0.013  Score=54.60  Aligned_cols=133  Identities=20%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh--
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI--  345 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al--  345 (473)
                      .-..+.-+|.+|+...+|..|..+|++.-               .+.|......+.-|+.+++.+.|..|+.......  
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~---------------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~  107 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLG---------------QLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN  107 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            34456678999999999999999999988               4455555666666677777776666665543322  


Q ss_pred             ----------------------------hhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         346 ----------------------------ELEP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       346 ----------------------------~~~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                                                  +.-|  +.+....+.|-..++-|+|++|++-|+.|++...-++-..+.++.+
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa  187 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA  187 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence                                        1123  4456677888888899999999999999999888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q psy4385         396 KQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       396 ~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ..+.+++..+-+ ....+.++
T Consensus       188 Hy~~~qyasALk-~iSEIieR  207 (459)
T KOG4340|consen  188 HYSSRQYASALK-HISEIIER  207 (459)
T ss_pred             HHhhhhHHHHHH-HHHHHHHh
Confidence            766555544433 33344433

>smart00028 TPR Tetratricopeptide repeats

Probab=96.72  E-value=0.0024  Score=37.88  Aligned_cols=31  Identities=42%  Similarity=0.745  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +++++|.++..++++++|+..|.+++.++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666655554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.016  Score=50.70  Aligned_cols=104  Identities=18%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ......++..++..++++.|+...+.++..-.            -..+...+-.++|.+++.+++++.|+...+..-.-+
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence            34455678889999999999999999984321            123456677899999999999999998765543322


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      -. +-.--.+|.++...|+-++|+..|.+|+..++++
T Consensus       157 w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         157 WA-AIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            11 1224579999999999999999999999998554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.71  E-value=0.037  Score=49.39  Aligned_cols=95  Identities=26%  Similarity=0.382  Sum_probs=51.7

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC-CHHHHH
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN-NEKAFF  356 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-~~ka~~  356 (473)
                      .++..+++..|+..|.+++...+.            .......+..++..+...+++..|+..+.+++...+. ...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            455555566666666555431110            0012333334444455556666666666666666666 466666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         357 RRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      .++.++...+.++.|+..+..++...|.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            6666666666666666666666666655

>KOG2376|consensus

Probab=96.68  E-value=0.013  Score=59.31  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=68.5

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      +.+.++|+.+..++|+..++ .+                 +++...+..-+|+.++++++|++|++.|...++.+.++..
T Consensus        84 EKAYc~Yrlnk~Dealk~~~-~~-----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK-GL-----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh-cc-----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            55566667777777777666 22                 2233557778899999999999999999999998887776


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      ...+.... ...-.. .+ . +.+.....|. .-+..++.+-+....+++.++..
T Consensus       146 ~~~r~nl~-a~~a~l-~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e  196 (652)
T KOG2376|consen  146 EERRANLL-AVAAAL-QV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIE  196 (652)
T ss_pred             HHHHHHHH-HHHHhh-hH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence            65443322 111000 01 1 3344444454 33455666666655566665554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.66  E-value=0.02  Score=44.22  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHHHH
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      .+..+.++++.+|++..+.|.+|.++...|++++|++.|-.+++.+|+.  ..++..+-.+-..++.....-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv   78 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV   78 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence            4667888999999999999999999999999999999999999999865  567777777766666554433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.64  E-value=0.0032  Score=39.47  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al  379 (473)
                      |.++|.+|..+|+|++|+..|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.59  E-value=0.039  Score=49.22  Aligned_cols=118  Identities=24%  Similarity=0.232  Sum_probs=80.1

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHcCChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM-CLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~kl~~~~~A~~~~~~al~  346 (473)
                      ....+...|..+...+++..|+..+..++......               .......+. ++...++++.|+..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455566666667777777777777777433321               122223333 78888888888888888888


Q ss_pred             hCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Q psy4385         347 LEP---NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQKLTQTKQKLR  400 (473)
Q Consensus       347 ~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~~  400 (473)
                      .+|   .....++.++..+...++++.|+..+.+++...|. .......+..+.....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            776   45666777777778888888888888888888888 4666666666655443

>KOG3081|consensus

Probab=96.57  E-value=0.041  Score=50.61  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHc----CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKL----KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       320 ~~~nla~~~~kl----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      .++.||.++.++    .++..|.-.|+..-+.-|..+..+...+.|++.+++|++|...++.||.-++++++...++-.+
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            344566666654    3688899999998887778899999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHH
Q psy4385         396 KQKLREQKI  404 (473)
Q Consensus       396 ~~~~~~~~~  404 (473)
                      ...+++-.+
T Consensus       251 a~~~Gkd~~  259 (299)
T KOG3081|consen  251 ALHLGKDAE  259 (299)
T ss_pred             HHHhCCChH
Confidence            766655433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.56  E-value=0.0038  Score=39.12  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      +|.++|.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999996655

>KOG2471|consensus

Probab=96.53  E-value=0.0066  Score=59.98  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh-h--
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE-L--  347 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-~--  347 (473)
                      .+.-..+.+|-.|+|.+|.+.....-.........+.      +-....+++|+|..+++++.|..++.+|.+||+ .  
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~------q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP------QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc------hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence            3444455666677777776665443211111000011      112344568999999999999999999999996 1  


Q ss_pred             ------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         348 ------EP---------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       348 ------~p---------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                            .|         .....+|+.|..|+..|+.-.|.++|.++...-..|+.+|-.|+.|...-
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                  11         23468999999999999999999999999999999999999999886443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.53  E-value=0.014  Score=59.99  Aligned_cols=104  Identities=21%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +.+--+...|..+..+|+.+.|+..|++++..-           .+.......+++.+|.|++-+.+|++|..++.+.++
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            344456678888999999999999999998321           145667788999999999999999999999999998


Q ss_pred             hCCCCHHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHhcC
Q psy4385         347 LEPNNEKAFF--RRGNAYLDLNEP-------ELAEKDFQKVLQID  382 (473)
Q Consensus       347 ~~p~~~ka~~--~~g~a~~~lg~~-------~~A~~~~~~al~l~  382 (473)
                      .+ .+.+++|  -.|.|+..+++.       ++|...|.++-.+-
T Consensus       334 ~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  334 ES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            54 4566654  578999999999       88888888776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.042  Score=51.37  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH--------
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK--------  343 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~--------  343 (473)
                      ....+..+...+++..|...|..++               ...+.+..+..-+|.||+..|+.+.|...+..        
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al---------------~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQAL---------------QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHH---------------HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence            3446777889999999999999999               44455577788889999998888666554433        


Q ss_pred             --------------------------HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q psy4385         344 --------------------------AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQT  395 (473)
Q Consensus       344 --------------------------al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~  395 (473)
                                                .+..||++..+-+.++..|...|++++|+..|-..++.|-.  +..++..|-.+
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence                                      11336778888888888888888888888877777776542  34555555555


Q ss_pred             HHHHH
Q psy4385         396 KQKLR  400 (473)
Q Consensus       396 ~~~~~  400 (473)
                      ...+.
T Consensus       282 f~~~g  286 (304)
T COG3118         282 FEAFG  286 (304)
T ss_pred             HHhcC
Confidence            54444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.47  E-value=0.0049  Score=37.41  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +++++|.|+.++|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.45  E-value=0.0043  Score=55.46  Aligned_cols=61  Identities=26%  Similarity=0.447  Sum_probs=56.7

Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      ...+.++.+.|.+.|++++.+-|.+...|+|+|....+.|+++.|.+.|.+.|+++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3456789999999999999999999999999999999999999999999999999998753

>KOG1941|consensus

Probab=96.41  E-value=0.018  Score=55.08  Aligned_cols=136  Identities=23%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--------C-------Chh-------------HHHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG--------F-------EGE-------------QETERKKTLTAC  320 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------~-------~~~-------------~~~~~~~~~~~~  320 (473)
                      +..+.+.|..++...++.+|+..+.+.+..+.....        .       +.+             -..+-......+
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777788888888888888777765443100        0       000             001122345678


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA------AV  389 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~-----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~------~~  389 (473)
                      +.|++..+-++.+|.+++.++.-.+.+....+     .++..+|.|+..++.|+.+++.|+.|+++..++.+      +.
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            99999999999999999999999998754333     67788999999999999999999999998765543      34


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4385         390 QKLTQTKQKLREQKI  404 (473)
Q Consensus       390 ~~l~~~~~~~~~~~~  404 (473)
                      ..|+.+...++...+
T Consensus       166 v~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhHHHHHHHHHhhhH
Confidence            455666555554443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.40  E-value=0.0049  Score=36.47  Aligned_cols=33  Identities=36%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      .+++++|.++..+++++.|+..+.+++.++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.038  Score=51.27  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      ........|+=..++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.++...++..|+++.+.
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            345667778888899999999999999999999999999999999999999999999999999999999987653

>KOG2053|consensus

Probab=96.27  E-value=0.07  Score=56.75  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      ....++|..|++...+.+               ...|....+..--|..+.++|.+++|..+.+..-...+++...+--+
T Consensus        19 ~ld~~qfkkal~~~~kll---------------kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l   83 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLL---------------KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL   83 (932)
T ss_pred             HhhhHHHHHHHHHHHHHH---------------HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence            345688889999888888               44555566667778899999999999965555555567777888889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       359 g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      -.||..++++++|...|++++..+|+ ......+-.++.+...+.+.++
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 6666666666555554444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.17  E-value=0.25  Score=41.89  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhCC----------CC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         323 NAAMCLLKLKQAKPAKDQCDKAIELEP----------NN------------EKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       323 nla~~~~kl~~~~~A~~~~~~al~~~p----------~~------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ..|......++...++..+.+++.+-.          .+            ..++.+++.++...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            345555667888899999999987631          11            25667788889999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         381 IDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       381 l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      ++|-+..++..+-.++...++..++.+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999988877665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.17  E-value=0.032  Score=60.73  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ..|..+...+...|+++.|...+++++.++|+++..|..++.+|...|++++|.+.++...+
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34556666666677777777777777777777666677777777777777777776665543

>KOG1941|consensus

Probab=96.15  E-value=0.034  Score=53.19  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=78.2

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+..+|+++...+.|++++..|+.|+++.....+..         +-..++..++-.+-++.+|++|+-+..+|+++-.+
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            444588999999999999999999998876543322         22456778888888888899888888888766321


Q ss_pred             ------C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         351 ------N----EKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       351 ------~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                            +    .-++|+++.++..+|+.-+|.++++.|.++
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                  1    246788888888889888888888888665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.14  E-value=0.19  Score=47.93  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             ccCchhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385         259 QLNSDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA  337 (473)
Q Consensus       259 ~~~~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  337 (473)
                      .+++......+..+++.|..+++++ +|..|+...++|.++++... ...........+...++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            5577777889999999999999999 99999999999999975421 011111244567888999999999999887644


Q ss_pred             HHHHHHHh----hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         338 KDQCDKAI----ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       338 ~~~~~~al----~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      .. |..++    ..-|+.+..++-.=.++.+.++.+++.+.+.+.+.--+
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            33 44433    33566666664555555558889999999988887543

It is also involved in sporulation [].

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.017  Score=58.34  Aligned_cols=80  Identities=25%  Similarity=0.416  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEe--cCCCCCCCCCCCCCCCC
Q psy4385         163 PKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFV--QPQHLWSGKGNDKLGVP  237 (473)
Q Consensus       163 p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i--~~~~~~~~~g~~~~~ip  237 (473)
                      ...|+.|+|.|.|..+|..|.+   .++.+.||.+.   .+||++.+|-+|+.|+...|.+  |..|.-...        
T Consensus       158 a~~gD~v~IDf~g~iDg~~fegg~ae~~~l~lGs~~---fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L--------  226 (441)
T COG0544         158 AENGDRVTIDFEGSVDGEEFEGGKAENFSLELGSGR---FIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL--------  226 (441)
T ss_pred             cccCCEEEEEEEEEEcCeeccCccccCeEEEEcCCC---chhhHHhhhccCcCCCeeEEEEEcccccchhHh--------
Confidence            7789999999999999999987   47899999998   9999999999999999987544  444433321        


Q ss_pred             CCCCceeeeeeccccc
Q psy4385         238 SNKPATYTITMNNFEK  253 (473)
Q Consensus       238 ~~~~~~y~i~L~~~~~  253 (473)
                      .+....|.+.+..+..
T Consensus       227 aGK~a~F~V~vkeVk~  242 (441)
T COG0544         227 AGKEATFKVKVKEVKK  242 (441)
T ss_pred             CCCceEEEEEEEEEee
Confidence            2245788888877755

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.09  E-value=0.063  Score=53.73  Aligned_cols=107  Identities=19%  Similarity=0.081  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHHHhhhhcCCCCCC------hhHHHHH----HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC--C
Q psy4385         284 KFELACRNYKKAIPYLDFDGGFE------GEQETER----KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN--N  351 (473)
Q Consensus       284 ~~~~A~~~y~~al~~~~~~~~~~------~~~~~~~----~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~  351 (473)
                      -..+|...|++|++.-+..-..+      .......    -....-+...+|+|..++|+.++|++.+...++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            35788888888887654421110      0000111    1123456678999999999999999999999988775  5


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI-DPNNKAAVQ  390 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~P~~~~~~~  390 (473)
                      ...++++-.+++.++.|+++.+.+.+.=.+ -|....+-+
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence            678999999999999999999999886433 244444433

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.09  E-value=0.065  Score=51.96  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=89.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      .......+..+...|++++|......+++-.-.             +   .++.  =.-.++.+++..=++..++.+...
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-------------~---~L~~--~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-------------P---RLCR--LIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-------------h---hHHH--HHhhcCCCCchHHHHHHHHHHHhC
Confidence            444444556677888999999998888843221             1   1111  122357889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      |+++..++.+|..+++.+.|.+|...|+.|+...|+. ..+..++.+..++++-..++
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHH
Confidence            9999999999999999999999999999999998874 45677777777665554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.08  E-value=0.057  Score=51.58  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      .+...+.+..+.|...|.+|.+..               .....+|...|..-++ .++.+.|...|+.+++.-|.+...
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~---------------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~   72 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDK---------------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCC---------------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCC---------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            344445555888999999998321               1235578888888666 567777999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLTQTKQKLR  400 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~  400 (473)
                      |......+..+++.+.|...|++++..-|...   .++...-....+.+
T Consensus        73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999877765   34554444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.86  E-value=0.1  Score=58.66  Aligned_cols=65  Identities=18%  Similarity=0.082  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      ..++.++|.+++..|+++.|...+.+++.+-.        ...-.+..+|.++...|++++|...+.+++.+.
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            34667888899999999999999998887621        122345577888888999999999999988764

>KOG1915|consensus

Probab=95.82  E-value=0.17  Score=50.36  Aligned_cols=90  Identities=16%  Similarity=0.228  Sum_probs=55.6

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHH------------------------------
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL------------------------------  329 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~------------------------------  329 (473)
                      ....+.+.+...|+.+|++++....           ..+.+++-.|...+                              
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkF-----------tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe  445 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKF-----------TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE  445 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccc-----------hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence            3567888999999999998886322           22333333333333                              


Q ss_pred             ---HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         330 ---KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       330 ---kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                         ++++++.|...|++-|+..|.|..+|...|..-..+|+.+.|.+.|..|+.
T Consensus       446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence               455666666666666666666666666666666666666666666665554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.71  E-value=0.16  Score=44.25  Aligned_cols=86  Identities=12%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIE-LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQKLTQ  394 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~  394 (473)
                      ..-.+.+|.....+|++.+|..+|.+++. +-.+++..+..++++.+.++++.+|...++...+-+|.-  ++-.-.+++
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            44567899999999999999999999985 456788899999999999999999999999999998864  333445555


Q ss_pred             HHHHHHHHH
Q psy4385         395 TKQKLREQK  403 (473)
Q Consensus       395 ~~~~~~~~~  403 (473)
                      .+..+++..
T Consensus       169 ~laa~g~~a  177 (251)
T COG4700         169 TLAAQGKYA  177 (251)
T ss_pred             HHHhcCCch
Confidence            555554444

>KOG1585|consensus

Probab=95.70  E-value=0.1  Score=47.36  Aligned_cols=100  Identities=20%  Similarity=0.189  Sum_probs=61.7

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh----hhC-
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI----ELE-  348 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~~-  348 (473)
                      +.+....+.-+.+.|+..|++++.++..+         .....-..++...+..+.+++.|.+|-..+.+-.    +.+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~---------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEED---------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            34444556667777777777777665532         2233445566677777788888887776665532    223 


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         349 -PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       349 -p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                       +.-.+++...-.+|+...+|..|..+++...++.
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence             2333555555566666678888888887766653

>KOG2796|consensus

Probab=95.66  E-value=0.18  Score=46.40  Aligned_cols=122  Identities=16%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh----hh
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI----EL  347 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al----~~  347 (473)
                      .+...+.+...+.|.-....|.+.++..+              +..+.+...++...++.|+-+.|..+++++-    .+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~--------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL  245 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYP--------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL  245 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCC--------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence            44566777888999999999999985332              3457788889999999999999999998553    33


Q ss_pred             CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       348 ~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      +.  .+.-.+.+.+.+|...++|.+|...|.++++.||.++.+.+.-+.|..-+++..++-|
T Consensus       246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence            32  3445667788888889999999999999999999999887777777666655555444

>KOG1585|consensus

Probab=95.63  E-value=0.46  Score=43.34  Aligned_cols=129  Identities=19%  Similarity=0.186  Sum_probs=81.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  347 (473)
                      +..+..-++.+...++|++|..+..+|++..+....         --.-+..|-..|+....+..+.++...+++|..+ 
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---------lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344445566677788999999999999966554221         1123456666777777788888888888888766 


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHH---HHHHHHHHHHHHHHHHH
Q psy4385         348 ----EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAV---QKLTQTKQKLREQKIKE  406 (473)
Q Consensus       348 ----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~---~~l~~~~~~~~~~~~~~  406 (473)
                          .|+-+-.-.-++-=..+.-+.++|+..|++++.+-.++   ..+.   ...++++-++++..+..
T Consensus       102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence                24444333444444456677888888888888764433   2222   23344455555555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.58  E-value=0.046  Score=43.44  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-----------ChhHHHHHHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-----------QAKPAKDQCDK  343 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----------~~~~A~~~~~~  343 (473)
                      ++..+|.+|++.+|++..+..+..-.....            ...++.-.|..+.++.           -.-.|++.+.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~------------~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~   69 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES------------SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR   69 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc------------hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence            456789999999999999999844332110            0123333344433322           23457788888


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      +..+.|..+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus        70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            888888888888888877666777888888877777653

>KOG1915|consensus

Probab=95.52  E-value=0.31  Score=48.47  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +...|.---.++++..|...|++||               ..+..+..+++..|-+-++.++...|....++|+.+-|.-
T Consensus        76 WikYaqwEesq~e~~RARSv~ERAL---------------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERAL---------------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH---------------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            3444555567888999999999999               4455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      -+.||..-..-..+|+.+-|...|.+=+...|+..
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            99999999999999999999999999999999743

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.51  E-value=0.2  Score=44.14  Aligned_cols=103  Identities=18%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .....+..+|.-|++.|+++.|++.|.++......            .......++++-.+.+..++|..+..+.++|-.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34567889999999999999999999998865432            334567788888888999999999999999866


Q ss_pred             hCC--CCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         347 LEP--NNE--K--AFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       347 ~~p--~~~--k--a~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      +-.  .+.  +  .--..|.+++..++|..|...|-.+..-
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            532  222  2  2223477778889999999888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.46  E-value=0.1  Score=58.52  Aligned_cols=100  Identities=10%  Similarity=-0.034  Sum_probs=79.0

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC-
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN-  350 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-  350 (473)
                      ....|..++..|++..|...+.+++...+..          .......++.++|.++...|+++.|...+.+++..... 
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~  524 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLT----------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH  524 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            3346777889999999999999998653321          11223456788999999999999999999999976322 


Q ss_pred             -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         351 -----NEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       351 -----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                           ...++.++|.+++..|++++|...+.+++.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 1346778899999999999999999999886

>KOG1586|consensus

Probab=95.34  E-value=0.17  Score=45.75  Aligned_cols=110  Identities=17%  Similarity=0.133  Sum_probs=75.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHhhh
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-LKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~  347 (473)
                      +..+.+-+| .|+..+..+|+++.++||.++.....         -..-+..+..+|-.|-. +.++++||.+|++|-+.
T Consensus        74 at~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Gr---------f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   74 ATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGR---------FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhH---------HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            333333333 45667888999999999877653211         11223344455655543 47899999999999755


Q ss_pred             C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         348 E------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       348 ~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      -      ..--|++...+.--..+++|.+|+..|+++..-.-+|+-.
T Consensus       144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            3      2233778888888888999999999999998877666543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=0.65  Score=40.96  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             hcchhhhccc---HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHH------HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         275 RGTTYFKQDK---FELACRNYKKAIPYLDFDGGFEGEQETERKKTL------TACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       275 ~G~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      .|-.|++..+   ...|-..|.+++.......+......+.+...+      ...-+.+|..+...+++++|+...+.++
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4555655544   447888999999877654443333333333333      2234566777888999999999999999


Q ss_pred             hhCC-CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         346 ELEP-NNEKA--FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV-QKLTQTKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       346 ~~~p-~~~ka--~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~-~~l~~~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      ..-. .+.++  -.|++.++..++.+++|+..+....  +++-.... ...+.+...++ ..+..+..|++.....
T Consensus       117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg-~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKG-DKQEARAAYEKALESD  189 (207)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcC-chHHHHHHHHHHHHcc
Confidence            6543 34444  4699999999999999999887554  22222322 33445554443 3345566777776655

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.26  E-value=0.32  Score=54.98  Aligned_cols=26  Identities=4%  Similarity=-0.082  Sum_probs=14.0

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHh
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAI  296 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al  296 (473)
                      .+..+-..+.+.|++++|...|.+..
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44445555555555555555555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.10  E-value=0.61  Score=52.80  Aligned_cols=114  Identities=9%  Similarity=-0.076  Sum_probs=74.3

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhh--cCCC-----------CCChhHH----HHHH------HHHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYL--DFDG-----------GFEGEQE----TERK------KTLTACHLNA  324 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~~~-----------~~~~~~~----~~~~------~~~~~~~~nl  324 (473)
                      ....+..+-..|.+.|++++|+..|.+....-  +...           ....++.    .++.      ..+...|..+
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL  585 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL  585 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence            35567777888999999999999998875431  1100           0000110    1111      0123456667


Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         325 AMCLLKLKQAKPAKDQCDKAIELE-PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       325 a~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      -.+|.+.|++++|.+.++...+.+ +.+...|..+..+|.+.|++++|+..|....+.
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            777778888888888888877765 345667777777777888888888887777664

>KOG2610|consensus

Probab=95.06  E-value=0.31  Score=46.44  Aligned_cols=111  Identities=13%  Similarity=-0.005  Sum_probs=54.4

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-CC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-EP  349 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-~p  349 (473)
                      .....+..++.+|++.+|...+.+.++-.|.+               ..++..--.+|+-+|+...-...+.+++-. +|
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtD---------------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~  169 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTD---------------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA  169 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHhCchh---------------hhhhhhhhhHHHhccchhhhhhHHHHhccccCC
Confidence            33445566788899999999999988655542               111111222233344444444444444433 33


Q ss_pred             CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         350 NNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       350 ~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      +-+   ...=.++.++...|-|++|.+..++|++++|.+.-+...+..+.
T Consensus       170 dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  170 DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            321   11112334444455555555555555555555444444443333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.00  E-value=0.26  Score=53.60  Aligned_cols=145  Identities=13%  Similarity=-0.042  Sum_probs=98.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhh--cCC-----------CCCChhHHHHH-HH--------HHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYL--DFD-----------GGFEGEQETER-KK--------TLTACHLNAAM  326 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~~-----------~~~~~~~~~~~-~~--------~~~~~~~nla~  326 (473)
                      ...+..+...|.+.|++++|+..|++.+..-  +..           ....-++...+ +.        .+...|..+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            4467777888889999999999998876421  110           00001111111 11        11235777888


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      ++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++...+..|..++.+.++..++.
T Consensus       471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            888999999999888764 2333 45678888889999999999999999999999998888888888777765554443


Q ss_pred             HHHHHHHhhh
Q psy4385         407 KQVYANMFDK  416 (473)
Q Consensus       407 k~~~~~~f~~  416 (473)
                       +.++.|-++
T Consensus       549 -~v~~~m~~~  557 (697)
T PLN03081        549 -KVVETLKRK  557 (697)
T ss_pred             -HHHHHHHHc
Confidence             344555433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.98  E-value=0.28  Score=45.86  Aligned_cols=75  Identities=13%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385         304 GFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a  378 (473)
                      ++.+.+.+.+......++...|..|+..|.|.+|++.|++++.+||-+...+.-+-..+..+|+--+|...|.+.
T Consensus       265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344556667778888888889999999999999999999999999999999999999999999977777766554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.95  E-value=0.13  Score=41.32  Aligned_cols=115  Identities=13%  Similarity=0.014  Sum_probs=79.3

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH----Hhh
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK----AIE  346 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----al~  346 (473)
                      .+..+|+..++.+++-.|+-+|++|+.+.+.....++.+..++-...+...-|+|..+..+|+.+-.+.+.+-    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999999988776544444555566667777888999999999999999988754    566


Q ss_pred             hCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNA-YLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      +-|.-+..   ...+ .-.+|--..|+-+|   ++..|+ +.+.+.+
T Consensus        83 LiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~v  122 (140)
T PF10952_consen   83 LIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN-PEIARLV  122 (140)
T ss_pred             hccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHH
Confidence            66664421   1111 12344445555554   455775 5544433

>KOG3824|consensus

Probab=94.95  E-value=0.044  Score=51.26  Aligned_cols=80  Identities=18%  Similarity=0.145  Sum_probs=68.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .|....+.+....+.|+.++|...|.-|+               .+.|.++.++...|...-.-++.-+|-.+|-+||.+
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAl---------------alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHAL---------------ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHH---------------hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            34444445666778999999999999999               667778999999999988888999999999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAY  362 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~  362 (473)
                      +|.|.+|+-+|+...
T Consensus       180 sP~nseALvnR~RT~  194 (472)
T KOG3824|consen  180 SPGNSEALVNRARTT  194 (472)
T ss_pred             CCCchHHHhhhhccc
Confidence            999999999987543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.91  E-value=0.054  Score=34.65  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .++.|+|.+|..+|+|++|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46677777777777777777777777655

>KOG3081|consensus

Probab=94.78  E-value=0.43  Score=44.10  Aligned_cols=103  Identities=12%  Similarity=0.134  Sum_probs=78.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .|.+|..++.   ..+++..|.-.|+.--.               --+..+.+.+..|.|++.+++|++|......||.-
T Consensus       175 LA~awv~la~---ggek~qdAfyifeE~s~---------------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  175 LAQAWVKLAT---GGEKIQDAFYIFEELSE---------------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHhc---cchhhhhHHHHHHHHhc---------------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4555544332   23457778888877653               22334678889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEK-DFQKVLQIDPNNKAA  388 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~-~~~~al~l~P~~~~~  388 (473)
                      +++++..+-|+-.+-..+|.-.++.. .+.+....+|+++-+
T Consensus       237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            99999999999999999998877664 455566667877654

>KOG2471|consensus

Probab=94.59  E-value=0.068  Score=53.11  Aligned_cols=96  Identities=13%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhh-hhcCCC-CCCh-hHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIP-YLDFDG-GFEG-EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~-~~~~-~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+.++|-.+|+.+.|..++.+|.+|++ .+.... .... .-..-.......+++|.|..|+..|++..|.+++.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            34567899999999999999999999995 221100 0000 00001122345688999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHh
Q psy4385         346 ELEPNNEKAFFRRGNAYLD  364 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~  364 (473)
                      ..-..|+..|.|++.|...
T Consensus       363 ~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHH
Confidence            9999999999999998865

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.44  E-value=0.39  Score=48.30  Aligned_cols=115  Identities=16%  Similarity=0.052  Sum_probs=75.3

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-----HHcCChhHHHHHHHHHhhhC----
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-----LKLKQAKPAKDQCDKAIELE----  348 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-----~kl~~~~~A~~~~~~al~~~----  348 (473)
                      ...+..+.+.-++.-++|+               +++|+.+.+|.-+|.-.     -...-|.+|++..+.++..+    
T Consensus       177 ~AWRERnp~aRIkaA~eAL---------------ei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~  241 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEAL---------------EINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQ  241 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHH---------------HhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence            3467788899999999999               55555566665555311     11111333333333333221    


Q ss_pred             ------------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         349 ------------PNN--EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       349 ------------p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                                  +.+  +.+-+|+|.|..++|+.++|++.++..++..|.  +-.++..|-.+.-.++.+.+.++
T Consensus       242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence                        111  345678999999999999999999999998886  45678888887777666655544

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.39  E-value=0.43  Score=49.08  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      ...|...-.++..|..+...|+.+.|++.+++++......    .-++|-+|-++..+.+|++|..+|.+..+.+.-.+.
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            4445667788899999999999999999999998544332    346889999999999999999999999997766555


Q ss_pred             HHHHH-HHHHHHHHHH--HHHHHHHHHHHhhhhcCCC
Q psy4385         388 AVQKL-TQTKQKLREQ--KIKEKQVYANMFDKFAKHD  421 (473)
Q Consensus       388 ~~~~l-~~~~~~~~~~--~~~~k~~~~~~f~~~~~~~  421 (473)
                      .+..+ +.|...+.+.  .+..++....+|.+....-
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            55444 4444444333  1122244455665555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03077 Protein ECB2; Provisional

Probab=94.33  E-value=0.67  Score=51.82  Aligned_cols=136  Identities=15%  Similarity=0.016  Sum_probs=91.9

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhh--hcCCCCC-----------ChhHH----HHHH-----HHHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPY--LDFDGGF-----------EGEQE----TERK-----KTLTACHLNAAM  326 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~~~~~-----------~~~~~----~~~~-----~~~~~~~~nla~  326 (473)
                      ...+..+...|.+.|+.++|+..|++..+.  .+.....           .-++.    ..+.     ..+...|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            345667778889999999999999987642  1111100           00110    0111     112346778888


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      ++.+.|++++|.+.+++. .+.|+ +..|..+-.++...++.+.|....+++++++|++...+..|..++...++..+..
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence            888889999988888774 34554 5556666667777888888888888899999999888888888877665555443

>PLN03077 Protein ECB2; Provisional

Probab=94.31  E-value=0.43  Score=53.31  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ...|..+-.++..-++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            344555555566788999999999999999999999999999999999999999998877654

>KOG1070|consensus

Probab=94.07  E-value=0.73  Score=51.76  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC----------------C-ChhHH------HHHHHHHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG----------------F-EGEQE------TERKKTLTACHLNA  324 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----------------~-~~~~~------~~~~~~~~~~~~nl  324 (473)
                      .+--|.+.=.-+.+.++.+.|....++|+..++....                . +++..      +...-.-...|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3334444434455666677777777777766643110                0 01100      00111223466677


Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       325 a~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +-.|.+-+++++|.+.++.-++.--+..+.|..+|..+++.++-++|...+.+||+.-|.
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            788888888999999998888877778889999999999999999999999999998887

>PRK10941 hypothetical protein; Provisional

Probab=93.92  E-value=0.34  Score=45.67  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ..+.+.++-..+.+.++|..|+++-++.+               .+.|..+.-+.-+|.+|.+++.+..|+.+++.-++.
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll---------------~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALL---------------QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            35566777888999999999999999999               555566777888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNA  361 (473)
Q Consensus       348 ~p~~~ka~~~~g~a  361 (473)
                      .|+.+.+..-+.+.
T Consensus       245 ~P~dp~a~~ik~ql  258 (269)
T PRK10941        245 CPEDPISEMIRAQI  258 (269)
T ss_pred             CCCchhHHHHHHHH
Confidence            99999886655544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.92  E-value=0.12  Score=32.98  Aligned_cols=30  Identities=27%  Similarity=0.223  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      ..++.++|.+|..+|+|++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.86  E-value=0.11  Score=48.86  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFR-RGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      ..+.+|...+.-..+.+-|...-..|.++|+.+|.|+..|.. .+.-+...++++.|.+.|.++|+++|+++.+|.+.-+
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            446778888888888899999999999999999999998866 5566778899999999999999999999998876654


Q ss_pred             HH
Q psy4385         395 TK  396 (473)
Q Consensus       395 ~~  396 (473)
                      ..
T Consensus       185 ~E  186 (435)
T COG5191         185 ME  186 (435)
T ss_pred             HH
Confidence            43

>KOG1070|consensus

Probab=93.85  E-value=0.61  Score=52.34  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      .....|...|..+++.++-+.|.....+||+--|.  ++...-..|+.-++.|+-+.+...|+-.+.-+|.-.+.|..+-
T Consensus      1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            35678999999999999999999999999999997  7888888999999999999999999999999999888887666


Q ss_pred             HHHHH
Q psy4385         394 QTKQK  398 (473)
Q Consensus       394 ~~~~~  398 (473)
                      ....+
T Consensus      1642 d~eik 1646 (1710)
T KOG1070|consen 1642 DMEIK 1646 (1710)
T ss_pred             HHHHc
Confidence            55443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.79  E-value=0.097  Score=47.09  Aligned_cols=60  Identities=18%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  352 (473)
                      .+++.++++.|...|.+|+               ++-|....-|+.+|....+.|+++.|.+.|.++|++||.+.
T Consensus         4 ~~~~~~D~~aaaely~qal---------------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQAL---------------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHh---------------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            4567899999999999999               66677889999999999999999999999999999999764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.76  E-value=0.54  Score=44.33  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       309 ~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      ....+......++..++-.+...++++.++...++.+.++|-+-++|.++=.+|+..|+...|+..|.+...+
T Consensus       144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3446677889999999999999999999999999999999999999999999999999999999999988774

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.74  E-value=0.42  Score=35.43  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .+....+.|..+|...+..+|+..++++++-...            .+..-.++-.++.+|...|+|.+++++.-+=+.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788999999999999999999999965543            334566777788889999999998887755443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.54  E-value=0.82  Score=44.88  Aligned_cols=114  Identities=20%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhh-hhcCCCCC------------------ChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIP-YLDFDGGF------------------EGEQETERKKTLTACHLNAAMCLLKL  331 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~nla~~~~kl  331 (473)
                      ...+.+..+...|+..+|+...+..+. .+......                  ............+.+++.+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            344455556667777778877777776 22221000                  00012233455677788888777777


Q ss_pred             ------CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q psy4385         332 ------KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP-----------------ELAEKDFQKVLQIDPN  384 (473)
Q Consensus       332 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~-----------------~~A~~~~~~al~l~P~  384 (473)
                            +.++.++..|..|++++|.+.++|++.|..+..+=+.                 ..|+..|-+++.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  7888899999999999999999999888877654222                 2366777777777665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.54  E-value=1.2  Score=42.61  Aligned_cols=102  Identities=13%  Similarity=0.096  Sum_probs=76.8

Q ss_pred             hhcchhhh-cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385         274 ERGTTYFK-QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       274 ~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  352 (473)
                      ..+..-+. .++...|...|+++++.               -+.+..+++.....++++++.+.|...+++++..-|...
T Consensus        40 ~~A~~E~~~~~d~~~A~~Ife~glk~---------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   40 AYALMEYYCNKDPKRARKIFERGLKK---------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHHHHHTCS-HHHHHHHHHHHHHH---------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            33444344 67778899999999954               445677788888889999999999999999998866554


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         353 ---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       353 ---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                         ..|-+...--...|+++......+++.++-|++..+..
T Consensus       105 ~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  105 QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence               46666777778889999999999999999998665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.53  E-value=1  Score=38.56  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ....+..+..+-++.++.+.+...+.-+--+.|+.+..-.--|..+...|+|.+|+..|+.+..-.|..+.+...+..|.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            35566777788888999999999999999999999999999999999999999999999999998999998888888888


Q ss_pred             HHHHH
Q psy4385         397 QKLRE  401 (473)
Q Consensus       397 ~~~~~  401 (473)
                      ..++.
T Consensus        89 ~~~~D   93 (160)
T PF09613_consen   89 YALGD   93 (160)
T ss_pred             HHcCC
Confidence            66543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.44  E-value=0.4  Score=37.35  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ..+.++|..|+..+.+..++........      .......+.+++|.++...|++++|+..+++|+.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSS------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccch------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3567999999999888886644321110      01234456778888888888888888888888766

>KOG1310|consensus

Probab=93.43  E-value=0.31  Score=49.11  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             HHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       328 ~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                      .+....+..|+.+|.++++.-|+....|-+++.++++.+   +.-.|+.++..|++++|....++..|.++...+....+
T Consensus       384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            334456778999999999999999999999999998864   55679999999999999999999999999988887776


Q ss_pred             HH
Q psy4385         405 KE  406 (473)
Q Consensus       405 ~~  406 (473)
                      +.
T Consensus       464 al  465 (758)
T KOG1310|consen  464 AL  465 (758)
T ss_pred             hh
Confidence            54

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.41  E-value=0.87  Score=44.72  Aligned_cols=126  Identities=17%  Similarity=0.141  Sum_probs=95.2

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...+..+.+.|++..|.....++.......           ....+.+.+..|..+...|+..+|+......+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-----------~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-----------ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-----------cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677788889999999999999999888544211           111355677778888888999999988877776


Q ss_pred             h--C-C-------------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCH
Q psy4385         347 L--E-P-------------------------------NNEKAFFRRGNAYLDL------NEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       347 ~--~-p-------------------------------~~~ka~~~~g~a~~~l------g~~~~A~~~~~~al~l~P~~~  386 (473)
                      .  . +                               ...++++.+|.-...+      +.+++++..|..|..++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1  0 0                               1236777888777777      889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4385         387 AAVQKLTQTKQKLREQK  403 (473)
Q Consensus       387 ~~~~~l~~~~~~~~~~~  403 (473)
                      .++..++.....+-...
T Consensus       293 k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESD  309 (352)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88888887776654443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4507|consensus

Probab=93.29  E-value=0.31  Score=49.65  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=90.2

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG  359 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g  359 (473)
                      .-+|+..+|..+|..|+-+.+.             -..-.+++.+|..+.++|...+|--....|+.--|....-+|-++
T Consensus       224 R~~G~~~~A~~Ca~~a~hf~~~-------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~  290 (886)
T KOG4507|consen  224 RIKGEPYQAVECAMRALHFSSR-------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG  290 (886)
T ss_pred             HHcCChhhhhHHHHHHhhhCCc-------------ccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence            4678999999999999966543             112346778999999999999988888888887777777799999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         360 NAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ---KLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       360 ~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~---~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      +++..+++|......|..+++.+|.....-.   ..-.|..++-+..++.++..+.|
T Consensus       291 ~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~  347 (886)
T KOG4507|consen  291 NIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT  347 (886)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997644322   22334444444444444433333

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.24  E-value=0.75  Score=50.91  Aligned_cols=138  Identities=10%  Similarity=0.047  Sum_probs=96.3

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----C---ChhHHHHHHHHHhh
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----K---QAKPAKDQCDKAIE  346 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----~---~~~~A~~~~~~al~  346 (473)
                      ....++...+.|++|+..|++....++.-.            .--.+.+..|.+.+..    +   .+.+|+.-+++. .
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  546 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRK------------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-H  546 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcc------------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-c
Confidence            455677888999999999999886665311            1133556666666542    2   466666666553 3


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCchH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK-EKQVYANMFDKFAKHDTEK  424 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~-~k~~~~~~f~~~~~~~~~~  424 (473)
                      -.|.-+--|...|.+|.++|+|++-+++|..|++..|+++.+-.....+..++.+.... .+..|.-|+=-+...+.+.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (932)
T PRK13184        547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI  625 (932)
T ss_pred             CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            34566677889999999999999999999999999999998877666666666555433 4456677765555444433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.24  E-value=0.14  Score=32.27  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .+|.++|.+-+..++|++|+.+|+++|.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888889999999999888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4814|consensus

Probab=93.07  E-value=0.82  Score=47.24  Aligned_cols=78  Identities=15%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      ..++-|-|.-++++.+|..+++.|...+..-|.      ..|...+++.||+.+.+.|.|++.++.|-+.+|.+.-....
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            445667888999999999999999999977554      35888889999999999999999999999999998766554


Q ss_pred             HHHH
Q psy4385         392 LTQT  395 (473)
Q Consensus       392 l~~~  395 (473)
                      .-..
T Consensus       434 ~~~~  437 (872)
T KOG4814|consen  434 MLQS  437 (872)
T ss_pred             HHHH
Confidence            4433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.04  E-value=4.8  Score=38.28  Aligned_cols=104  Identities=21%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             hhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhh----CC---C
Q psy4385         279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIEL----EP---N  350 (473)
Q Consensus       279 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~----~p---~  350 (473)
                      ..++|+++.|...|.|+-.......+       ..-...+..++|.|...++.+ +|+.|+...++|+++    .+   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            35789999999999999876632111       333456889999999999999 999999999999877    22   1


Q ss_pred             -------CHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCHHHH
Q psy4385         351 -------NEKAFFRRGNAYLDLNEPEL---AEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       351 -------~~ka~~~~g~a~~~lg~~~~---A~~~~~~al~l~P~~~~~~  389 (473)
                             ..+.+..++.+|+..+.++.   |...++.+-.-.|+.+...
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence                   12567778999999888764   4444444545557655554

It is also involved in sporulation [].

>KOG2610|consensus

Probab=92.95  E-value=0.27  Score=46.76  Aligned_cols=96  Identities=14%  Similarity=-0.015  Sum_probs=66.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ...+++-.-.++|..|+...-...+++.+..-+.           -.|...-++--+|.|+...|-|++|.+..++++++
T Consensus       136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-----------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi  204 (491)
T KOG2610|consen  136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-----------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI  204 (491)
T ss_pred             hhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-----------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence            3445555566788888888888888888743221           13344556667889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKD  374 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~  374 (473)
                      ++.+.=|...++.++...+++.++.+.
T Consensus       205 N~~D~Wa~Ha~aHVlem~~r~Keg~eF  231 (491)
T KOG2610|consen  205 NRFDCWASHAKAHVLEMNGRHKEGKEF  231 (491)
T ss_pred             CCcchHHHHHHHHHHHhcchhhhHHHH
Confidence            988765555555555555555444443

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.71  E-value=1.4  Score=44.03  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--cCC-----hhHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK--LKQ-----AKPAK  338 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--l~~-----~~~A~  338 (473)
                      +.......+.|..++..|+|.+|+..|+..|..++-....+.++..+++.+...+.-.+-.+.+.  .+.     .+...
T Consensus       201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            34444555679999999999999999999998877655555566666666555544333222222  222     12233


Q ss_pred             HHHHHHh-----hhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         339 DQCDKAI-----ELEPNNEKAFFRRGN-AYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       339 ~~~~~al-----~~~p~~~ka~~~~g~-a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      +.++-|.     .+.|.+...-+|.|. ..++.++|.-|....++.|++.|....+
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a  336 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA  336 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence            3344433     334433333344443 3467899999999999999999986543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.68  E-value=4.2  Score=34.89  Aligned_cols=111  Identities=12%  Similarity=-0.072  Sum_probs=81.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ...+.+........++...+...+...-               -++|..+.+-.--|..++..++|.+|+..++.+..-.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALr---------------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALR---------------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHH---------------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            4456666677777788888888776554               5667778888899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      |..+.+---++.|+..+++.+ =..+-..+++-.+ ++.+......+.
T Consensus        75 ~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   75 PGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALL  120 (160)
T ss_pred             CCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence            998877777888888888863 1233344555554 455555444443

>KOG3364|consensus

Probab=92.44  E-value=0.17  Score=41.68  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF  356 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~  356 (473)
                      .-.+.+.+|..|+++++|+.++.+++..|+.+|+|..|.-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3557788999999999999999999999999999998863

>KOG2053|consensus

Probab=92.39  E-value=0.65  Score=49.74  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=81.1

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      -.|..+++.|++++|..+ -+++.....              ..-..+--+-.||..++++++|...|++++..+|+ .+
T Consensus        48 LkaLsl~r~gk~~ea~~~-Le~~~~~~~--------------~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee  111 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKL-LEALYGLKG--------------TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE  111 (932)
T ss_pred             HHHHHHHHhcCchhHHHH-HhhhccCCC--------------CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence            356678899999999944 444433222              12335556788999999999999999999999999 89


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA-AVQKLTQTKQKL  399 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~  399 (473)
                      -++.+-.||.+-+.|.+-.+.--+..+.-|+++- .|..+..+.+.+
T Consensus       112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence            9999999999999998766666666667787763 244444444433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.33  E-value=0.76  Score=35.73  Aligned_cols=57  Identities=11%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             HHHcCChhHHHHHHHHHhhhCC----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         328 LLKLKQAKPAKDQCDKAIELEP----NN-----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       328 ~~kl~~~~~A~~~~~~al~~~p----~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      .++.++|..|++...+.+....    ..     ..++.++|.++...|++++|+..++.|+++...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4689999999888888775532    12     467889999999999999999999999988643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.19  E-value=1.5  Score=43.48  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=77.9

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--------------
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--------------  347 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--------------  347 (473)
                      ...|.++...|..++.....   ..--.--...|..+..++.++.++..+|++..|.+.+++||-.              
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp---~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDP---NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCH---HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            45677788888877743211   0001112556788999999999999999999999999999711              


Q ss_pred             C------------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CH
Q psy4385         348 E------------PNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NK  386 (473)
Q Consensus       348 ~------------p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~  386 (473)
                      +            +.|   ..|+++..+.+.+.|.+.-|++.++-.+.+||. |+
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            1            112   268899999999999999999999999999999 55

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.14  E-value=0.44  Score=29.67  Aligned_cols=33  Identities=9%  Similarity=0.111  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q psy4385         353 KAFFRRGNAYLDLNEPELAEKD--FQKVLQIDPNN  385 (473)
Q Consensus       353 ka~~~~g~a~~~lg~~~~A~~~--~~~al~l~P~~  385 (473)
                      +.++.+|..+...|+|++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3456666666666777777666  33666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.47  E-value=5.2  Score=38.95  Aligned_cols=109  Identities=11%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQ------------AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~------------~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  379 (473)
                      .-+|.+..+|+.+....-.+-.            .+..+..+++||+.+|++...+..+=.+..+..+-++..+-+++++
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l   92 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL   92 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4455566666666655544432            4677889999999999999999888888889999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHhhhhcCC
Q psy4385         380 QIDPNNKAAVQKLTQTK-QKLREQ-KIKEKQVYANMFDKFAKH  420 (473)
Q Consensus       380 ~l~P~~~~~~~~l~~~~-~~~~~~-~~~~k~~~~~~f~~~~~~  420 (473)
                      ..+|++..++..+-... ...... -..-+..|.+++..+...
T Consensus        93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~  135 (321)
T PF08424_consen   93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR  135 (321)
T ss_pred             HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence            99999988876543332 222211 234556777777666543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.34  E-value=1.2  Score=36.01  Aligned_cols=75  Identities=15%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      +-.+--+..++...|+|++++..-.+|+.+++.-..-..++    -.+.+.+.+++|.++--+|..++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44556677788899999999999999999987643333322    2357888999999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1550|consensus

Probab=91.00  E-value=1.8  Score=45.66  Aligned_cols=104  Identities=18%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             HHhhcchhhhc----c-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHH
Q psy4385         272 LKERGTTYFKQ----D-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDK  343 (473)
Q Consensus       272 ~~~~G~~~~~~----~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~  343 (473)
                      ...+|..|.+.    . ++..|+..|.+|...                 .++.+.+++|.|+..-.   ++..|..+|..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence            44566666653    2 788899999998843                 34668889999998766   67899999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         344 AIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      |...  .++.|.|++|.||..    ..+...|...+++|.+..  +..+...+..+.
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            8876  478999999999975    357899999999999887  444444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.76  E-value=2  Score=33.11  Aligned_cols=40  Identities=15%  Similarity=0.038  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      ..+|.+..+.+.+|.+++..|+|+.|++.+-.+++.++.+
T Consensus        16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            6678889999999999999999999999999999999876

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.49  E-value=5.1  Score=37.87  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ  376 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~  376 (473)
                      +..+.-.+..+++..|...+..+++.+|.+..+..-++.||...|+.+.|...|.
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~  192 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA  192 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence            3455567789999999999999999999999999999999999999987665543

>KOG2300|consensus

Probab=90.44  E-value=7.2  Score=39.34  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.-+|.....-+.|+.|...|..|.+..+.            ..+.+-+-.|+|..|++.++-+.   .|+-.=.
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~  429 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED---LYKALDL  429 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHh
Confidence            45566777898888999999999999999976542            34567788899999999776433   2322223


Q ss_pred             hCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         347 LEPNN----------EKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       347 ~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      +.|.|          ..++|-.|...+..+++.||...+.+.|+..
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            45543          2578889999999999999999999999876

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.35  E-value=5  Score=40.16  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy4385         323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN----KAAVQKLTQTKQK  398 (473)
Q Consensus       323 nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~----~~~~~~l~~~~~~  398 (473)
                      .=|.-++..|+|.+|.-++.=+.+++| .+.+|.-+|.|++...+|++|..+|...   -|++    ..++..+..|.+.
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHh
Confidence            334556789999999999999999999 8999999999999999999999988643   3432    2345556666554


Q ss_pred             H
Q psy4385         399 L  399 (473)
Q Consensus       399 ~  399 (473)
                      +
T Consensus       543 ~  543 (549)
T PF07079_consen  543 L  543 (549)
T ss_pred             h
Confidence            4

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0686|consensus

Probab=90.30  E-value=1.4  Score=43.24  Aligned_cols=98  Identities=21%  Similarity=0.164  Sum_probs=77.0

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE-  348 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-  348 (473)
                      .++..+|.-|...|++..|++.|.++-.++..            .......+.|+-.+-+-+++|.....+.++|.+.- 
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~  218 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD  218 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence            45667888889999999999999998777653            23346677788888888999999998888887661 


Q ss_pred             -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385         349 -------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       349 -------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  379 (473)
                             .-.++...-.|.+++.++.|..|.++|-.+-
T Consensus       219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                   1134666778899999999999999887663

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.96  E-value=5.1  Score=39.29  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG  359 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g  359 (473)
                      ...|+|+.|++..+......-.       +....+.....++...|...+. -+...|.++..+++++.|+.+.+-.--+
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AA  270 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAA  270 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHH
Confidence            4566677776665554421110       0012333445555555555443 3588999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         360 NAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       360 ~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      .++++.|+..++-..++.+.+.+|+
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCC
Confidence            9999999999999999999999986

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.73  E-value=3  Score=42.96  Aligned_cols=103  Identities=16%  Similarity=0.039  Sum_probs=76.8

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHhhhCCCCHHHHH
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP-AKDQCDKAIELEPNNEKAFF  356 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~-A~~~~~~al~~~p~~~ka~~  356 (473)
                      .+...+....|.-....++               ..++.+..++.|+|.+....+..-. +...+..+....|+|.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          76 LLAPLADSTLAFLAKRIPL---------------SVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             hccccccchhHHHHHhhhH---------------hcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            3344444545555555555               5567788999999999877775554 45555559999999988777


Q ss_pred             HH------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         357 RR------GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       357 ~~------g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      .+      +.....+++.++|...+.++..+.|.++.+...+...
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            76      8888889999999999999999999997766555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.61  E-value=0.48  Score=26.96  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQ  376 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~  376 (473)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0530|consensus

Probab=89.09  E-value=7.8  Score=36.02  Aligned_cols=107  Identities=18%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      ++...-.+|++.-..+|               .++|.+-..+.-+=.|+..++ +..+-+++.+++++-+|.|...|..|
T Consensus        54 ~~~E~S~RAl~LT~d~i---------------~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR  118 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAI---------------RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR  118 (318)
T ss_pred             hccccCHHHHHHHHHHH---------------HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence            45556678888888888               666777777777777776655 57778888899999999999999988


Q ss_pred             HHHHHhcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         359 GNAYLDLNEPE-LAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       359 g~a~~~lg~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      -.+...+|++. .-+...+.++..|..|--++....-+.+..+.
T Consensus       119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~  162 (318)
T KOG0530|consen  119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD  162 (318)
T ss_pred             HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence            88888888887 77888999999888887777777766666655

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.00  E-value=0.63  Score=29.37  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      .+|..+|-+-+..++|.+|+.+|.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.93  E-value=1.4  Score=43.99  Aligned_cols=136  Identities=10%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      +-..+.-.|+|..|++..+.. .+-..      ..-...-+-....++..|-||+.+++|.+|++.+..+|-.=...-..
T Consensus       128 LlRvh~LLGDY~~Alk~l~~i-dl~~~------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~  200 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENI-DLNKK------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQ  200 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhcc-Ccccc------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334566778888888765432 11110      00012234467789999999999999999999999987542111112


Q ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         355 FFRRGNAYLD-LNEPELAEKDFQKVLQIDPN--NKAAVQKLTQ-TKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       355 ~~~~g~a~~~-lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~-~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      +..+..-+-. ....|.....+--++.+.|.  +..+...+.. ...++.+-...+-..|..+|...
T Consensus       201 ~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a  267 (404)
T PF10255_consen  201 YHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA  267 (404)
T ss_pred             hccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence            2222222222 24456667777778888885  4444444332 23333333333556788888764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.80  E-value=7.2  Score=37.16  Aligned_cols=107  Identities=21%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             hHHHHhhcchhhh----cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----C---ChhHH
Q psy4385         269 GKLLKERGTTYFK----QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----K---QAKPA  337 (473)
Q Consensus       269 a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----~---~~~~A  337 (473)
                      +.....+|..++.    ..++.+|...|.+|...-...              -..+.++++.+|..-    +   +...|
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--------------a~~~~~~l~~~~~~g~~~~~~~~~~~~A  174 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--------------AALAMYRLGLAYLSGLQALAVAYDDKKA  174 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--------------HHHHHHHHHHHHHcChhhhcccHHHHhH
Confidence            3355566666665    459999999999998432210              034467777777653    1   33479


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         338 KDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       338 ~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      +..+.++....  ++.+.+++|.+|..    ..++.+|...|.+|.+...  ..+...+.
T Consensus       175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            99999988876  88999999988855    4589999999999998875  66666666

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.75  E-value=5.9  Score=31.67  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCCCCHHH---HHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKA---FFRRGNAYLDLNE-----------PELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      +|.-++..|++-+|++..+..+...+++..+   +..-|.++..+..           +-.|+++|.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            5677889999999999999999998877643   3344666655432           2358899999999999986666


Q ss_pred             HHHHHH
Q psy4385         390 QKLTQT  395 (473)
Q Consensus       390 ~~l~~~  395 (473)
                      ..|+.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            666554

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.33  E-value=1.5  Score=27.25  Aligned_cols=32  Identities=13%  Similarity=-0.029  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHH--HHHHhhhCCCC
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQ--CDKAIELEPNN  351 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~--~~~al~~~p~~  351 (473)
                      .+..+|.++...|+|++|++.  |.-+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456789999999999999999  55888888765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.33  E-value=1.9  Score=40.85  Aligned_cols=62  Identities=19%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      |..+|.+|+.+.|.+-..|..+|..+...++.=+|+-.|-|++...--.+.+..+|..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999997765557788888877766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1550|consensus

Probab=88.22  E-value=4  Score=43.03  Aligned_cols=116  Identities=18%  Similarity=0.117  Sum_probs=83.6

Q ss_pred             hHHHHhhcchhh-----hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-----ChhHHH
Q psy4385         269 GKLLKERGTTYF-----KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-----QAKPAK  338 (473)
Q Consensus       269 a~~~~~~G~~~~-----~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----~~~~A~  338 (473)
                      +.+....|..++     ...+.+.|+.+|+.|..-+.          .......+.+.+.+|.||++-.     ++..|+
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~----------~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~  313 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFK----------KAATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL  313 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH----------HHHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence            444455565554     34689999999999984100          0111124556788999998843     678899


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      ..+.++-.+.  ++.+.|++|.+|..-.   ++..|..+|..|...  .+..+...++.|...
T Consensus       314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            9999998885  7789999999998766   678999999999865  456677777777644

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.97  E-value=0.84  Score=45.46  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=47.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHh--------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAI--------ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al--------~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .-+..+|.-+|+|..|++..+-+=        ..-+.++..+|..|.||+.+++|.+|++.|..+|..
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566788999999998765431        112456788999999999999999999999888743

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.91  E-value=6.4  Score=33.30  Aligned_cols=84  Identities=13%  Similarity=0.050  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ...+.....+.+...+++++.......--+.|+++..-.--|..+...|+|.+|+..|+....-.+..+-....+..|..
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            44455566666678888888888888888899999888888999999999999999999888877777777777777776


Q ss_pred             HHHH
Q psy4385         398 KLRE  401 (473)
Q Consensus       398 ~~~~  401 (473)
                      .++.
T Consensus        90 al~D   93 (153)
T TIGR02561        90 AKGD   93 (153)
T ss_pred             hcCC
Confidence            6543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.83  E-value=1.9  Score=28.17  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         356 FRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       356 ~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      +.++.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2300|consensus

Probab=87.65  E-value=7.2  Score=39.37  Aligned_cols=99  Identities=20%  Similarity=0.058  Sum_probs=78.6

Q ss_pred             hHHHHhhcchh-hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhh
Q psy4385         269 GKLLKERGTTY-FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIE  346 (473)
Q Consensus       269 a~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~  346 (473)
                      |..+..+|..+ +..++++.|..+.++|..+....+.+        ....-.++.-+|.||.... .+..|.....+|++
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaie  117 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIE  117 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            55666676655 67899999999999998776654322        2345667788999999888 89999999999999


Q ss_pred             hCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q psy4385         347 LEPNNE----KAFFRRGNAYLDLNEPELAEKDF  375 (473)
Q Consensus       347 ~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~  375 (473)
                      +...++    +.++.+++.+.-..+|..|++.+
T Consensus       118 lsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  118 LSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            976655    67788999999999999998774

>KOG2047|consensus

Probab=87.18  E-value=4.2  Score=42.41  Aligned_cols=128  Identities=12%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             eeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHH
Q psy4385         244 YTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN  323 (473)
Q Consensus       244 y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n  323 (473)
                      |+..+.-|+.-+..++.-.+.++.......+.|..+-...-|++|.+.|++.|.+++...          .-..-..|+-
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~----------v~diW~tYLt  555 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN----------VYDIWNTYLT  555 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc----------HHHHHHHHHH
Confidence            344444555545555555566666666777777777788888999999999998877521          1122334444


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCC-CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEP-NNEKAFF-RRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p-~~~ka~~-~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .....+--...+.|...|++||...| ..+|.+| ..++.-..-|--..|+..|++|-.-
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            44444555578899999999999876 3445544 3444445556677777778777543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.36  E-value=4.3  Score=40.11  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHH---cCChhHHHHHHHHHh-hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCC
Q psy4385         317 LTACHLNAAMCLLK---LKQAKPAKDQCDKAI-ELEPNNEKAFFRRGNAYLDL---------NEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       317 ~~~~~~nla~~~~k---l~~~~~A~~~~~~al-~~~p~~~ka~~~~g~a~~~l---------g~~~~A~~~~~~al~l~P  383 (473)
                      .....+..|.++.+   .|+.++|++.+..++ ..++.++..|--+|.+|..+         ..++.|+..|.++.+++|
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            45556677888888   899999999999954 55667888888888887542         247899999999999997


Q ss_pred             CC
Q psy4385         384 NN  385 (473)
Q Consensus       384 ~~  385 (473)
                      +.
T Consensus       258 ~~  259 (374)
T PF13281_consen  258 DY  259 (374)
T ss_pred             cc
Confidence            63

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.08  E-value=3.4  Score=30.53  Aligned_cols=34  Identities=32%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD  300 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~  300 (473)
                      ..|..+-..+..+-+.|+|.+|+.+|++|+..+-
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~   37 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS   37 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            3466777788889999999999999999997654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.99  E-value=0.96  Score=25.69  Aligned_cols=24  Identities=21%  Similarity=0.144  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+++++|..+..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.03  E-value=7.8  Score=28.86  Aligned_cols=62  Identities=16%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF---FRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~---~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      -+...|.-++..++..+|+....+||+..++....+   =.+.+||...|+|.+++++..+-+.+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566788899999999999999887766543   34568889999999988776544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=7.3  Score=40.26  Aligned_cols=74  Identities=19%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK-VLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~-al~l~P~~~~~~~~l~~~~~  397 (473)
                      ++..+..++....+......++..+|.+..++.+++.+....|....|+..+.. +....|+|..+...+-.+++
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence            677788888998999999999999999999999999999988887777766665 99999999888776643333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.62  E-value=8.8  Score=38.04  Aligned_cols=52  Identities=13%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      .+..||+++++.+.|+....+.+.++|....-+-..+.|.+.+.++.++.+.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999887777788888888888888775

>KOG0529|consensus

Probab=84.54  E-value=11  Score=37.20  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHhhhCCCCHHHHH-HHHH
Q psy4385         284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QAKPAKDQCDKAIELEPNNEKAFF-RRGN  360 (473)
Q Consensus       284 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~~~A~~~~~~al~~~p~~~ka~~-~~g~  360 (473)
                      -.+.-+..-..++               ..+|....+|+.+..++.+..  ++..-++.|+++|+.||.|..+|. ||-.
T Consensus        90 ~ld~eL~~~~~~L---------------~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV  154 (421)
T KOG0529|consen   90 LLDEELKYVESAL---------------KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV  154 (421)
T ss_pred             hhHHHHHHHHHHH---------------HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence            4455555556666               667778889999999998876  478899999999999999998875 4433


Q ss_pred             HHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         361 AYLDLNE---PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       361 a~~~lg~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +-.....   ..+=+.+..+++.-++.|-.++.....+...+
T Consensus       155 ~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  155 VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            3333333   67778888999998999988887777666533

>KOG0530|consensus

Probab=84.26  E-value=10  Score=35.32  Aligned_cols=86  Identities=17%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      +-..-..|++....+|.++|.|.-.|..|-.++..+ .+..+-++.+..+++-+|.|-+++.....+.+.++...-.|-.
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            445567899999999999999998887776676665 4678889999999999999999988888888777644435555


Q ss_pred             HHHHHhh
Q psy4385         409 VYANMFD  415 (473)
Q Consensus       409 ~~~~~f~  415 (473)
                      ..+.|+.
T Consensus       135 f~~~~l~  141 (318)
T KOG0530|consen  135 FTKLMLD  141 (318)
T ss_pred             HHHHHHh
Confidence            6666664

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.65  E-value=5.9  Score=33.36  Aligned_cols=47  Identities=21%  Similarity=0.283  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      ....+++..+..|+|.-|...+..++..+|+|..++..+..+...+.
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            33444444444555555555555555555555555555444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.62  E-value=30  Score=30.41  Aligned_cols=68  Identities=10%  Similarity=0.010  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      .....++..+|.-|.+.|+++.|++.|.++......   -...+++.-.+....++|..+...+.+|-.+-
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            344678899999999999999999999998877533   34678888899999999999999999987764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617|consensus

Probab=83.60  E-value=12  Score=40.41  Aligned_cols=63  Identities=17%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHh----------hhCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAI----------ELEPN----------NEKAFFRRGNAYLDLNEPELAEKDFQK  377 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al----------~~~p~----------~~ka~~~~g~a~~~lg~~~~A~~~~~~  377 (473)
                      -..|+|.|.-+-..++.+.|+++|+++-          .-+|.          +.+.|-..|+-+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            4568888988888999999999998752          23443          335556678888889999999999987


Q ss_pred             HHh
Q psy4385         378 VLQ  380 (473)
Q Consensus       378 al~  380 (473)
                      |-.
T Consensus       938 A~D  940 (1416)
T KOG3617|consen  938 AKD  940 (1416)
T ss_pred             hhh
Confidence            754

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.58  E-value=9.2  Score=34.59  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=56.0

Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      .+++-+...+|+.....-++-+|.+.-....+-+.|.-.|+|+.|...++.+-+++|+...-
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~   71 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG   71 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence            35778889999999999999999999888888899999999999999999999999997543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.49  E-value=27  Score=37.43  Aligned_cols=117  Identities=11%  Similarity=-0.002  Sum_probs=84.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC---C----CC----hhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG---G----FE----GEQETERKKTLTACHLNAAMCLLKLKQAKPA  337 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~---~----~~----~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  337 (473)
                      +-.+.-.|......+...+|.+++.++++.+....   .    .+    .+...-+......+++..+.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            33444457777777877799999999998766532   1    11    1112234456677888889999999999999


Q ss_pred             HHHHHHHhhhC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCC
Q psy4385         338 KDQCDKAIELE---P------NNEKAFFRRGNAYLDLNEPELAEKDFQ--------KVLQIDPNN  385 (473)
Q Consensus       338 ~~~~~~al~~~---p------~~~ka~~~~g~a~~~lg~~~~A~~~~~--------~al~l~P~~  385 (473)
                      ......+....   |      ..+..+|-.|..+...|+.+.|+..|.        .+....+.+
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~  445 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR  445 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence            99888777553   2      246789999999999999999999998        555555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2047|consensus

Probab=83.27  E-value=24  Score=37.07  Aligned_cols=152  Identities=12%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC--CCChhH-HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG--GFEGEQ-ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~--~~~~~~-~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      +.+..+.+-|..-....+++.|+...++|...-....  ..+..+ ....--....+|...+...-.+|-++.+...|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4577788888888889999999999999874422211  001000 1111122345566666666667777888888888


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhhhhc
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PNNKAAVQK-LTQTKQKL-REQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~~~~~~~~-l~~~~~~~-~~~~~~~k~~~~~~f~~~~  418 (473)
                      +|.+.--.+....|.|..+.....|++|-+.|++.+.+-  |+-.+++.. |.+..++. +..-+..+.+|.++++.+.
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            887777777777777777777777777777777776664  333444432 22222222 2223444555555555444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.16  E-value=32  Score=34.09  Aligned_cols=102  Identities=12%  Similarity=0.022  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhcCCCCHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL----EPNNEKAFFRRGNAYLD---LNEPELAEKDFQK-VLQIDPNNKA  387 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p~~~ka~~~~g~a~~~---lg~~~~A~~~~~~-al~l~P~~~~  387 (473)
                      +.+....|+=.+|....+|+.-+...+..-.+    -++....-+.+|.|+.+   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34556678888899999999999888877666    34566777888999988   9999999999999 4555667789


Q ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhh
Q psy4385         388 AVQKLTQTKQKLREQ--------KIKEKQVYANMFDKF  417 (473)
Q Consensus       388 ~~~~l~~~~~~~~~~--------~~~~k~~~~~~f~~~  417 (473)
                      ++-.++++++.+-..        ..+.-..|++.|..-
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            999999988776443        223335677777543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.99  E-value=27  Score=37.43  Aligned_cols=112  Identities=19%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             hhHHHHhhcchhh-hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYF-KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .+.....+|..++ ...+++.|..+..+++.+....         .+......+.+-++.++.+.+... |...++++++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~  127 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH---------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE  127 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence            3667778888887 8889999999999999777541         344455666667788888888766 9999999997


Q ss_pred             hCCC----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCCHHHH
Q psy4385         347 LEPN----NEKAFFRRGNAY--LDLNEPELAEKDFQKVLQID--PNNKAAV  389 (473)
Q Consensus       347 ~~p~----~~ka~~~~g~a~--~~lg~~~~A~~~~~~al~l~--P~~~~~~  389 (473)
                      .-..    ...-.|++-.+.  ...+++..|+..++....+.  +.++.+.
T Consensus       128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence            7544    344445554332  22379999999999998876  3555443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2422|consensus

Probab=82.88  E-value=15  Score=37.88  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             hhcchhh---hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh---
Q psy4385         274 ERGTTYF---KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL---  347 (473)
Q Consensus       274 ~~G~~~~---~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~---  347 (473)
                      +.|+.+|   ....|++|...|.-|+...+....   -..-.-.|.....++.+|..+...|+.+.|.....++|-.   
T Consensus       240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v---~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~  316 (665)
T KOG2422|consen  240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNV---LILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR  316 (665)
T ss_pred             cCceeEEEeecchHHHHHHHHHHHHHhhcCCcce---eeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            3455554   345688888888888755433110   0000224778889999999999999999999888888721   


Q ss_pred             ------------------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHH
Q psy4385         348 ------------------EPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQ  390 (473)
Q Consensus       348 ------------------~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-~~~~~~  390 (473)
                                        .|.|   ..++|+.-+.+.+.|.+.-|.+.++..+.++|. |+-+..
T Consensus       317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l  381 (665)
T KOG2422|consen  317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL  381 (665)
T ss_pred             HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH
Confidence                              2333   257778888888999999999999999999998 775433

>KOG1839|consensus

Probab=82.74  E-value=4.9  Score=45.30  Aligned_cols=106  Identities=18%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+....+.|......+.+.+|.+ ..+++.+++...       -.+++....+|..+|..+.+++++++|+..+.+|.-+
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence            45566677777888888888888 667766655311       2678888999999999999999999999999988754


Q ss_pred             C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         348 E--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       348 ~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .        |+...+|-+++...+.......|+..+.+++.+
T Consensus      1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            2        456788889998888888999999999998876

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=82.66  E-value=16  Score=34.82  Aligned_cols=98  Identities=20%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCC-HHHH
Q psy4385         281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNN-EKAF  355 (473)
Q Consensus       281 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~-~ka~  355 (473)
                      ...++..|+..|..+.                 ....+...+++|..|..    ..++.+|..+|.+|....-.. ..+.
T Consensus        89 v~~~~~~A~~~~~~~a-----------------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~  151 (292)
T COG0790          89 VSRDKTKAADWYRCAA-----------------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM  151 (292)
T ss_pred             ccccHHHHHHHHHHHh-----------------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence            3445788888888555                 33456688889999877    458999999999999886433 3448


Q ss_pred             HHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         356 FRRGNAYLDLN-------EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       356 ~~~g~a~~~lg-------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +++|.+|..-.       +...|...|.++....  +..+...|+.++.
T Consensus       152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~  198 (292)
T COG0790         152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE  198 (292)
T ss_pred             HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            89998887741       2337899999888765  5666666665553

>KOG3617|consensus

Probab=82.56  E-value=5.8  Score=42.60  Aligned_cols=112  Identities=14%  Similarity=-0.003  Sum_probs=72.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC------CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDF------DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      -..+++.+..+-.+++...|+.+|+++-...-.      +.+. .-+.--.......+|.-.|+..-..|+.+.|+.+|.
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~-~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK-QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS  936 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH-HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence            344556666666677777777777776421100      0000 000001122334677788888888899999998888


Q ss_pred             HHhh---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         343 KAIE---------------------LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       343 ~al~---------------------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .|-.                     ....+--|-|.+|..|...|++-+|+..|.+|..+
T Consensus       937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            7742                     23456678999999999999999999888776543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=82.29  E-value=3.7  Score=38.40  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ...+.+.=..+...+++..|...-.+.+               .++|..+.-+.-+|.+|.+++.+..|+.+++..++..
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l---------------~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~  245 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLL---------------DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC  245 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHH---------------hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence            3445556667888999999999999999               4455556667789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNA  361 (473)
Q Consensus       349 p~~~ka~~~~g~a  361 (473)
                      |+.+.+-.-+.+.
T Consensus       246 P~~~~a~~ir~~l  258 (269)
T COG2912         246 PDDPIAEMIRAQL  258 (269)
T ss_pred             CCchHHHHHHHHH
Confidence            9998776655543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.10  E-value=11  Score=34.30  Aligned_cols=88  Identities=11%  Similarity=-0.033  Sum_probs=51.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC----CCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF----DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ..|..+..++-.+-..++-+.....+++|+..+..    ......      .-....+.+-+|..+.++|++++|+..+.
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~------~~~~~~l~YLigeL~rrlg~~~eA~~~fs  189 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE------GMDEATLLYLIGELNRRLGNYDEAKRWFS  189 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC------CchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44555555555555555544444444444433322    000000      11224578889999999999999999999


Q ss_pred             HHhhhCCCCH-HHHHHHHH
Q psy4385         343 KAIELEPNNE-KAFFRRGN  360 (473)
Q Consensus       343 ~al~~~p~~~-ka~~~~g~  360 (473)
                      +++.....+. ..+..+|.
T Consensus       190 ~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  190 RVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHcCCCCCCcHHHHHHHH
Confidence            9998754333 34444443

>KOG0292|consensus

Probab=81.81  E-value=9.2  Score=41.41  Aligned_cols=124  Identities=18%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-----cC--ChhHH-
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-----LK--QAKPA-  337 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-----l~--~~~~A-  337 (473)
                      +.......+.|..+...|+|.+|+..|..+|-.++-..-.+.++..+.+.+...+...+.-..+.     ++  ..+.+ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            44566677889999999999999999999986555433334445555555554443322222211     22  23333 


Q ss_pred             -HHHHHHHhhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         338 -KDQCDKAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       338 -~~~~~~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                       +..|=.-+.+.|-+ +-|+..--.+++++++|..|-....+.|++.|..+.+.
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence             22222223455543 34444444678899999999999999999999877653

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=81.79  E-value=4  Score=34.39  Aligned_cols=51  Identities=22%  Similarity=0.156  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP  368 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~  368 (473)
                      ......+|...+..|+|.-|++.++.++..+|+|..+..-++.+|.+++.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            345567888889999999999999999999999999999999988877653

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.55  E-value=9.5  Score=28.53  Aligned_cols=65  Identities=17%  Similarity=0.046  Sum_probs=46.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC------CCChhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG------GFEGEQETERKKTLTACHLNAAMCLLKL  331 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~kl  331 (473)
                      +.|-...+.|..+-..|+.+.|+.+|+++++.+....      ....++|.....+....-.+++.+-.++
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4466777788888888999999999999998876511      2344566666666666666666665444

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG1839|consensus

Probab=81.31  E-value=22  Score=40.37  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +.+..+..++..+...+++++|+..-.+|.-+.+.....+       .+.....|.|++...+..++...|+..+.+++.
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence            4566778888899999999999999988886655433322       234567889999999999999999999999986


Q ss_pred             h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         347 L--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       347 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      +        .|.-.-..-+++..+..+++++-|+++++.|+.+.
T Consensus      1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6        34444556788899999999999999999999864

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.11  E-value=35  Score=33.78  Aligned_cols=115  Identities=10%  Similarity=-0.001  Sum_probs=75.9

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcC-----C-----CCCC----hhHHHHHHHHHHHHHHHHHHHHHHc
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF-----D-----GGFE----GEQETERKKTLTACHLNAAMCLLKL  331 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-----~-----~~~~----~~~~~~~~~~~~~~~~nla~~~~kl  331 (473)
                      +-.+..+.+.+..+..+|++..|....++|+-.++.     -     ....    -+....-+...-.+++.....+.+.
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R  116 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR  116 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence            345677888888888899999999988888865542     0     0000    0000011223344555666778899


Q ss_pred             CChhHHHHHHHHHhhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         332 KQAKPAKDQCDKAIELEPN-NEK-AFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       332 ~~~~~A~~~~~~al~~~p~-~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      |.|.-|.+.|.-.+.+||. ++- +++.+=...++.++|+--+..++....
T Consensus       117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            9999999999999999998 664 445555555666777766655555443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.86  E-value=4.6  Score=37.67  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=33.1

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ++|..|+..|+|++|+..|+.+......+         .=..+...++..+..|+.++|+.+..+..+-+.+
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45666666666666666666664332211         1122344455556666666666666655554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.08  E-value=34  Score=33.83  Aligned_cols=91  Identities=13%  Similarity=0.012  Sum_probs=64.2

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      .+....-.|+|+.|.+.|+.-+..-            +...+-..+   |=....++|.++.|+++...+-..-|.-.=+
T Consensus       126 eAQaal~eG~~~~Ar~kfeAMl~dP------------EtRllGLRg---LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA  190 (531)
T COG3898         126 EAQAALLEGDYEDARKKFEAMLDDP------------ETRLLGLRG---LYLEAQRLGAREAARHYAERAAEKAPQLPWA  190 (531)
T ss_pred             HHHHHHhcCchHHHHHHHHHHhcCh------------HHHHHhHHH---HHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence            3445566789999999988776221            111111222   2233457899999999999999999988877


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      +.-.=...+..|+|+.|++.++....
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            77666778889999999988876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	473
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-98
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-97
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-65
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-63
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		2e-58
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		6e-58
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		7e-38
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		8e-38
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		2e-37
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		6e-35
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		3e-33
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		3e-33
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-31
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		4e-31
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		5e-31
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		5e-31
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		1e-28
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		2e-27
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		7e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		2e-23
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-23
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		3e-23
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		4e-23
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		6e-23
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		8e-23
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		1e-22
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		1e-22
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-22
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-22
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-22
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		3e-22
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		5e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		6e-22
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-21
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-21
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-21
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		5e-21
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-21
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		7e-21
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-20
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-19
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-19
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-19
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-18
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		9e-18
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		4e-17
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		6e-17
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-15
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		7e-15
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		7e-15
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		7e-15
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		2e-13
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		2e-12
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-12
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		3e-11
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		4e-09
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		4e-09
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		5e-09
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		7e-09
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		1e-08
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		1e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-08
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		3e-08
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		4e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-07
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		4e-07
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-05
2lkn_A	165	Solution Structure Of The Ppiase Domain Of Human Ar		2e-05
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		4e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		6e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-04
1ix5_A	151	Solution Structure Of The Methanococcus Thermolitho		4e-04
1wao_1	477	Pp5 Structure Length = 477		6e-04

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/443 (42%), Positives = 272/443 (61%), Gaps = 9/443 (2%)
Query: 19  VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
           V  +  D+T   D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF
Sbjct: 18  VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 77
Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
            F LGKGQVIKAWD G+ATMK+ E+    CKPEYAYG  GS P IP ++TL FE+E++ +
Sbjct: 78  VFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
           + ED+    DGGI R    +G  +S P +GA VEI L+G C G++F     +F +GEG +
Sbjct: 138 KGEDL--FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGED 195
Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
           +DIP  ++KALEK + +E+  L++ P++ +   G  K G+  N    Y +T+ +FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255
Query: 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT 316
           +W++++ EKLEQ  ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315
Query: 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
           L A  LN AMC LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375
Query: 377 KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTXXXXXXXXXXPDVM 436
           KVL+++P NKAA  +++  ++K +E   +++++YANMF KFA+ D             + 
Sbjct: 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKA-----MG 430
Query: 437 KTLGEWGAEERGRESTNFEKENP 459
           K   E    E+G +S   E+E P
Sbjct: 431 KKTSEGVTNEKGTDSQAMEEEKP 453

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  350 bits (899), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 176/394 (44%), Positives = 251/394 (63%), Gaps = 2/394 (0%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G +V VHY G L +G  FDSS  R EPF F +GKGQVIKA
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGG 148
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FEVE++ ++ ED+    DGG
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGEDL--LEDGG 147
Query: 149 IRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALE 208
           I R     G  +S P +GA V+I L+G C G+VF     +F +GEG ++DIP  ++KALE
Sbjct: 148 IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALE 207
Query: 209 KFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQ 268
           K + +E+  L + P++ +   G  K G+  N    Y +T+ +FEK K++W++++ EKLEQ
Sbjct: 208 KMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ 267
Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
             ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  L A  LN AMC 
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL+++P NKAA
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
Query: 389 VQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
             ++   ++K +E   ++++ YANMF KFA+ D 
Sbjct: 388 RLQIFMCQKKAKEHNERDRRTYANMFKKFAEQDA 421

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  244 bits (623), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 180/277 (64%)
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEK 205
           DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+P  LE+
Sbjct: 24  DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLER 83
Query: 206 ALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEK 265
           A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W++NS+EK
Sbjct: 84  AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEK 143
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
           LEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    A HLN A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           MC LKL+    A + C+KA+EL+ NNEK  FRRG A+L +N+ ELA  DFQKVLQ+ PNN
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
           KAA  +L   +Q++R Q  +EK++YANMF++ A+ + 
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEEN 300

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  238 bits (607), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 178/277 (64%)
Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEK 205
           DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+P  LE+
Sbjct: 24  DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLER 83
Query: 206 ALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEK 265
           A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W+ NS+EK
Sbjct: 84  AIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEK 143
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
           LEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +    A HLN A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           MC LKL+    A + C+KA+EL+ NNEK   RRG A+L +N+ ELA  DFQKVLQ+ PNN
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDT 422
           KAA  +L   +Q++R Q  +EK++YANMF++ A+ + 
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEEN 300

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 152/241 (63%)
Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 40  MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 99
Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 100 DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 159
Query: 139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD 198
           ED++   DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D
Sbjct: 160 EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD 219
Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW 258
           +P  LE+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W
Sbjct: 220 LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESW 279
Query: 259 Q 259
           +
Sbjct: 280 E 280

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  221 bits (564), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 157/245 (64%), Gaps = 4/245 (1%)
Query: 19  VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
           V  +  D+T   D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF
Sbjct: 22  VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPF 81
Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
            F LGKGQVIKAWD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ +
Sbjct: 82  VFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
           + ED+    DGGI R    +G  +S P +GA VEI L+G C G++F     +F +GEG +
Sbjct: 142 KGEDL--FEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGED 199
Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
           +DIP  ++KALEK + +E+  L++ P++ +   G  K G+  N    Y +T+ +FEK K+
Sbjct: 200 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 259
Query: 257 TWQLN 261
           +W+++
Sbjct: 260 SWEMD 264

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 24/241 (9%)
Query: 45  TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVF 104
           TP  G +V+VHYTGTLLDG  FDSS+ R + F+F LG+GQVIK WD+GI TMKK E A+F
Sbjct: 26  TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW-EAEDISPTHDGGIRREILEEGASFSTP 163
           T  PE AYG+ GSPPTIP ++TL F+VE++SW    DI+   DGGI ++IL+EG  +  P
Sbjct: 86  TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIA--KDGGIFKKILKEGDKWENP 143
Query: 164 KDGANVEITLKGECE-GKVFQEGTFSFVLGEGSEYDIPEN-----LEKALEKFKYKEKSR 217
           KD   V +  +   E G V  +        EG E+ + +      L KA++  K  EK  
Sbjct: 144 KDPDEVFVKYEARLEDGTVVSK-------SEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 196
Query: 218 LFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLK 273
           L V+PQ+ +   G    G    VP N      + + +++ +    ++  D+K+ + K+LK
Sbjct: 197 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT---EIGDDKKILK-KVLK 252
Query: 274 E 274
           E
Sbjct: 253 E 253

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 143/241 (59%), Gaps = 24/241 (9%)
Query: 45  TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVF 104
           TP  G +V+VHYTGTLLDG  FDSS+ R + F+F LG+GQVIK WD+GI TMKK E A+F
Sbjct: 42  TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 105 TCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA-EDISPTHDGGIRREILEEGASFSTP 163
           T  PE AYG+ GSPPTIP ++TL F+VE++SW +  DI+   DGGI ++IL+EG  +  P
Sbjct: 102 TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIA--KDGGIFKKILKEGDKWENP 159
Query: 164 KDGANVEITLKGECE-GKVFQEGTFSFVLGEGSEYDIPEN-----LEKALEKFKYKEKSR 217
           KD   V +  +   E G V  +        EG E+ + +      L KA++  K  EK  
Sbjct: 160 KDPDEVFVKYEARLEDGTVVSK-------SEGVEFTVKDGHLCPALAKAVKTMKKGEKVL 212
Query: 218 LFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLK 273
           L V+PQ+ +   G    G    VP N      + + +++ +    ++  D+K+ + K+LK
Sbjct: 213 LAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT---EIGDDKKILK-KVLK 268
Query: 274 E 274
           E
Sbjct: 269 E 269

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 24  IDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLG 81
           ID+T   DGGVLK IK  G G   P+ G  VKVHY GTL +GT FDSS+ RG+ F F+LG
Sbjct: 6   IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLG 65
Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDI 141
           +G VIK WD G+ATM K EVA FT + +Y YG  GSPP IP  +TL+FEVE+  W AEDI
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDI 125
Query: 142 SPTHDGGIRR 151
           SP  DG I R
Sbjct: 126 SPDRDGTILR 135

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 85/119 (71%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK IK  G G  TP  G +V VHYTG LLDGT FDSS  R + F FDLGKG+VIKA
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDG 147
           WD  +ATMK  E+   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ ED++   DG
Sbjct: 89  WDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTDDEDG 147

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 82/121 (67%)
Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 24  MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 83
Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 84  DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 143
Query: 139 E 139
           E
Sbjct: 144 E 144

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 82/121 (67%)
Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +E   I    D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F F
Sbjct: 20  MEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSF 79
Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           DLGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ 
Sbjct: 80  DLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 139
Query: 139 E 139
           E
Sbjct: 140 E 140

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F LGKGQVIKA
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 94  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F LGKGQVIKA
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 94  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F LGKGQVIKA
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 78  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 77/111 (69%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F LGKGQVIKA
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           WD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 78  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 75/102 (73%)
Query: 34  KEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGI 93
           K++ TPG G T P AG KV VHY G   DG  FDSS++RG+PF+F LG G+VIK WD+G+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 94  ATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           ATM   E A+FT   + AYG++G PP IPP +TLVFEVE+++
Sbjct: 88  ATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 35  EIKTPGVGD--TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRG 92
           ++ T   GD  T P AG    VHYTGTL DG VFDSS+TRG+PF F +G+G+VI+ WD G
Sbjct: 4   QVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEG 63
Query: 93  IATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           +A M   + A   C P+YAYG +G P  IPP++TL F+VE++  E
Sbjct: 64  VAQMSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 68/107 (63%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P AG    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP++TL+F+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 3   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 63  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 66/107 (61%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W 
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 66/107 (61%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W 
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 24  IDLTDDGGVLKEIKTPGVG--DTTPSAGCKVKVHYTGTL-LDGTVFDSSKTRGEPFEFDL 80
           + LT+DGGV+K I   G G  +  P  G +V VHY G L   G VFDSS+ R  PF+F L
Sbjct: 9   VHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHL 68
Query: 81  GKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
           G+G+VIK WD  +A+M K+E        +Y YG++G   +IP +S L+FE+E+IS+
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 65/103 (63%)
Query: 35  EIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIA 94
           E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+ G+A
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 95  TMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG   DSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 67/107 (62%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ + +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG   DSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 67/106 (63%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           +G V  +  +PG G T P  G  V +HYTGTL +G  FDSS  RG PF+ ++G GQVIK 
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64
Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           WD GI  +   E A  T    YAYG +G P  IPP+STLVF+VE++
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 67/107 (62%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ ++
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 66/107 (61%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+  +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 68/107 (63%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L +G  FDSS+ R +PF+F +GK +VIK ++
Sbjct: 1   GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G A M   + A  TC P+ AYG  G P  IPP++TL+F+VE+++ E
Sbjct: 61  EGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 10  VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
           +I++ R ++  S  +  T + G+  E  T G G     AG  V VHYTG L DG  FDSS
Sbjct: 86  IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70  KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
           K R +PFEF LG G VIK WD G+  MK   V   T  P+  YG +G+   IPP++TLVF
Sbjct: 143 KDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
           EVE++
Sbjct: 203 EVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10  VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
           +I++ R ++  S  +  T + G+  E  T G G     AG  V VHYTG L DG  FDSS
Sbjct: 86  IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70  KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
           K R +PF F LG G VIK WD G+  MK   V   T  P+  YG +G+   IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVF 202
Query: 130 EVEMI 134
           EVE++
Sbjct: 203 EVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10  VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
           +I++ R ++  S  +  T + G+  E  T G G     AG  V VHYTG L DG  FDSS
Sbjct: 86  IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70  KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
           K R +PF F LG G VIK WD G+  MK   V   T  P+  YG +G+   IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
           EVE++
Sbjct: 203 EVELL 207

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26  LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
           +T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G V
Sbjct: 24  VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 82
Query: 86  IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           IK WD G+  MK   V   T  P+  YG +G+   IPP++TLVFEVE++
Sbjct: 83  IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 10  VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
           +I++ R ++  S  +  T + G+  E  T G G     AG  V VHYTG L DG  FDSS
Sbjct: 86  IIEAHREQIGGSTIV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSS 142
Query: 70  KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
           K R +PF F LG G VIK WD G+  MK   V   T  P+  YG +G+   IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
           EVE++
Sbjct: 203 EVELL 207

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26  LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
           +T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G V
Sbjct: 4   VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
Query: 86  IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           IK WD G+  MK   V   T  P+  YG +G+   IPP++TLVFEVE++
Sbjct: 63  IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 26  LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
           +T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G V
Sbjct: 8   VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 66
Query: 86  IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           IK WD G+  MK   V   T  P+  YG +G+   IPP++TLVFEVE++
Sbjct: 67  IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 10  VIDSKRIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS 69
           +I++ R ++  S  +  T + G+  E  T G G     AG  V VHYTG L DG  F SS
Sbjct: 86  IIEAHREQIGGSTVV--TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFGSS 142
Query: 70  KTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVF 129
           K R +PF F LG G VIK WD G+  MK   V   T  P+  YG +G+   IPP++TLVF
Sbjct: 143 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 202
Query: 130 EVEMI 134
           EVE++
Sbjct: 203 EVELL 207

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 20  ESKAIDLTDDGGVLKEIKTPG--VGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
           E + ++LT DGGV+K I   G    +  P  G +V VHY G L   G VFDSS  R  PF
Sbjct: 6   EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
           +F L +G+VIK WD  +++M+K+E  +   +  Y YG +G   +IP +S L+FE+E++S+
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 20  ESKAIDLTDDGGVLKEIKTPG--VGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
           E + ++LT DGGV+K I   G    +  P  G +V VHY G L   G VFDSS  R  PF
Sbjct: 6   EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65
Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
           +F L +G+VIK WD  +++M+K+E  +   +  Y YG +G   +IP +S L+FE+E++S+
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFD-GGFEGEQETERKKTLTACHLNAAMCLLK 330
           LK  G T+FK   +E+A + Y K + Y++      E     + +    +C LN   C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
           +   + A D C +A+E++P+N KA +RR   +  L E + A  D +K  +I P +KA   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 391 KLTQTKQKLREQKIKEKQVYANMF 414
           +L + KQK++ QK KEK  YA MF
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%)
Query: 52  VKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYA 111
           + +HYTG L DGT FDSS  + +PF F LG GQVIK WD+G+  M + E        E  
Sbjct: 12  LHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELG 71
Query: 112 YGKQGSPPTIPPDSTLVFEVEMISWE 137
           YG++G+PP IP  +TLVFEVE++  E
Sbjct: 72  YGERGAPPKIPGGATLVFEVELLKIE 97

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 26  LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQV 85
           +T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G V
Sbjct: 4   VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 86  IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           IK WD G+  MK   V   T  P+  YG  G+   IPP++TLVFEVE++
Sbjct: 63  IKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 10/103 (9%)
Query: 42  GDTT--PSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLGKGQVIKAWDRG 92
           GD T  P  G  V   YTGTL DGTVFD++       K   +P  F +G G+VI+ WD  
Sbjct: 14  GDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEA 73
Query: 93  IATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
           + TM K E A    +PE+AYGK+G P   IPP++ L+FEVE++
Sbjct: 74  LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 42  GDTT--PSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLGKGQVIKAWDRG 92
           GD T  P  G  V   YTGTL DGTVFD++       K   +P  F +G G+VI+ WD  
Sbjct: 11  GDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 93  IATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
           + TM K E A    +PE+AYGK+G P   IPP++ L FEVE++
Sbjct: 71  LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 236 VPSNKPATYTITMNNFEKIKD---TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNY 292
           VP      Y + +  F++ K+      +  +E++      K  G + FK++K E A + Y
Sbjct: 143 VPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQY 202
Query: 293 KKAIPYL--DFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350
           + AI Y+  DF     G+ +         CHLN A CL+KLK+   A   C+  +  E  
Sbjct: 203 EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262
Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY 410
           N KA FRRG A  +L + + A  DF+K  +  P++KA  ++L    ++ +    K+K++Y
Sbjct: 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322
Query: 411 ANMF 414
             +F
Sbjct: 323 KGIF 326

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T   G++ ++   G G+  P     V V+Y GTL+DG  FD+S TRGEP  F L    VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VI 174
Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
             W  G+  +KK         PE AYGK G  P IPP+STLVF+VE++
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T   G++ ++   G G+  P     V V+Y GTL+DG  FD+S TRGEP  F L    VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVI 174
Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPT 144
             W  G+  +KK         PE AYGK G  P IPP+STLVF+VE++     D+ P 
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELL-----DVKPA 226

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 19  VESKAIDLTDDGGVLKEIKTPGVGD-TTPSAGCKVKVHYTGTL--LDGTVFDSSKTRGEP 75
           +  + +D++ D GVLK++   G GD   P A   VK  Y+G L  +D   FDS+  R  P
Sbjct: 15  LSQRMLDISGDRGVLKDVIREGAGDLVAPDASVLVK--YSGYLEHMDRP-FDSNYFRKTP 71
Query: 76  FEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
               LG+   +   + G+ +M++ E+A F  KP YAYG  G PP IPP++T++FE+E++ 
Sbjct: 72  RLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLD 131
Query: 136 W 136
           +
Sbjct: 132 F 132

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 40  GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKD 99
           G G   P+   K +VHYTG L DGTVFDSS+ RG+P  F     +VIK W   +  M++ 
Sbjct: 47  GSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREG 104
Query: 100 EVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           +        + AYG  G    IPP S L F+VE+IS
Sbjct: 105 DRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 49  GCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDR------GIATMKKDEVA 102
           G  +K HY G L +G VFDSS  RG+P  F +G G+VIK WD+      GI  M      
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 103 VFTCKPEYAYGKQGS-----PPTIPPDSTLVFEVEMI 134
                PE AYG +G+        IPP S L+F++E I
Sbjct: 90  TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
           K  G  Y+KQ  ++ A   Y+KA+               E      +   N      K  
Sbjct: 13  KNLGNAYYKQGDYQKAIEYYQKAL---------------ELDPNNASAWYNLGNAYYKQG 57
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
             + A +   KA+EL+PNN KA++RRGNAY    + + A +D+QK L++DPNN  A Q L
Sbjct: 58  DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 393 TQTKQK 398
              KQK
Sbjct: 118 GNAKQK 123

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314
           K  +    +EK++    +KE G  +FK+++   A   YK+A+ +      ++ +   ++K
Sbjct: 24  KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83
Query: 315 KTL-TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373
           K +  +C+LN A C  K K    A D   K ++++ NN KA ++ G A +     E A++
Sbjct: 84  KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143
Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
           +  K   ++PNN            KL+E + K+K  +  MFDK
Sbjct: 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 24  IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
           +D+  +G + K+   PG  G + P  G  V VH   +L +GT     + + EP   F LG
Sbjct: 5   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 59
Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEM 133
              VI+A D  +  M   E A+ T   +Y YG QG  P IPP + L  EV +
Sbjct: 60  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 24  IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
           +D+  +G + K+   PG  G + P  G  V VH   +L +GT     + + EP   F LG
Sbjct: 7   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 61
Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEM 133
              VI+A D  +  M   E A+ T   +Y YG QG  P IPP + L  EV +
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 39  PGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK 98
           PG  DT       V V YTG L+DGTVFDS++  G+P  F +   QVI  W   +  M  
Sbjct: 121 PGKSDT-------VTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPA 171
Query: 99  DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
                       AYG +     I P+ TL+F++ +IS
Sbjct: 172 GSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 36  IKTPGVGDTTPSAGCKVKVHYTGTL-LDGTVFDSSK--TRGEPFEFDLGKGQVIKAWDRG 92
           ++ P +       G  + VHY G L  DG++F S+     G+P  F LG  + +K WD+G
Sbjct: 19  LQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQG 78
Query: 93  IATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMI 134
           +  M   E       P   YGK+G    IPP+STL+F ++++
Sbjct: 79  LKGMCVGEKRKLIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           G+L    TPG G   P A  +V+V Y G L DG +FD S T+ + F  D     VI  W 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS-TQPQWFRLD----SVISGWT 171
Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
             +  M            + AYG +G+   I P + LVFE+E+I+
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 39  PGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK 98
           PG  DT       V V YTG L+DGTVFDS++  G+P  F +   QVI  W   +  M  
Sbjct: 45  PGKSDT-------VTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPA 95
Query: 99  DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
                       AYG +     I P+ TL+F++ +IS
Sbjct: 96  GSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
           G  Y+KQ  ++ A   Y+KA+               E          N      K     
Sbjct: 16  GNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
            A +   KA+EL+PNN +A++  GNAY    + + A + +QK L++DPNN  A Q L   
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 396 KQK 398
           KQK
Sbjct: 121 KQK 123

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 24  IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
           +D+  +G + K+   PG  G + P  G  V VH   +L +GT     + + EP   F LG
Sbjct: 11  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 65
Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEM 133
              VI+A D  +  M   E A+ T   +Y YG QGS  P IPP + L  EV +
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 24  IDLTDDGGVLKEIKTPGV-GDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEP-FEFDLG 81
           +D+  +G + K+   PG  G + P  G  V VH   +L +GT     + + EP   F LG
Sbjct: 37  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-----RVQEEPELVFTLG 91
Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEM 133
              VI+A D  +  M   E A+ T   +Y YG QGS  P IPP + L  EV +
Sbjct: 92  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
           K +G  YFK+  +  A R+Y +A+               +R       + N A CL KL 
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAV---------------KRDPENAILYSNRAACLTKLM 61
Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + + A D CD  I L+    K + R+    + + E   A++ ++  LQ+DP+N+ A
Sbjct: 62  EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK 398
           KA+EL+PNN +A++  GNAY    + + A + +QK L++DPNN  A Q L   KQK
Sbjct: 34  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
           G  Y+KQ  ++ A   Y+KA+               E          N      K     
Sbjct: 16  GNAYYKQGDYDEAIEYYQKAL---------------ELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
            A +   KA+EL PNN +A++  GNAY    + + A + +QK L++ PNN  A Q L   
Sbjct: 61  EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Query: 396 KQK 398
           KQK
Sbjct: 121 KQK 123

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 256 DTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TE 312
           D W + ++EK +   L+ + G   +++   + A   Y  AI  L      E  G  E  +
Sbjct: 1   DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
             + +T   LN   C L +++     D C   +    +N KA+F+RG A+  +   + A+
Sbjct: 61  LDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQ 120
Query: 373 KDFQKVLQIDPNNKAAVQK-LTQTKQKLREQKIKEKQVYANMF 414
            DF KVL++DP     V + L   + ++R++  ++K  +  +F
Sbjct: 121 ADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIF 163

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
           L S+E   + + LK  G    K + FE A   Y KAI             E      +  
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI-------------ELNPANAVYF 49
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
           C  N A    KL     A   C++AI ++P   KA+ R G A   LN+   A   ++K L
Sbjct: 50  C--NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
           ++DP+N+     L   + KLRE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TERKKTLTA 319
           D+KL+  + L+++G   F Q  ++ A   Y+ A+  LD     E  GE E  E  +    
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
            + N + C L +     A++   + ++ E  NEKA FRR  A +   + + AE+D + +L
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 380 QIDPNNKAAV-QKLTQTKQKLREQKIKEKQVYANMF 414
           +  P   + V +++    ++  E+K   +  Y+ MF
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human Aryl-Hydrocarbon Receptor-Interacting Protein (Aip) Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 49  GCKVKVHYTGTLLD--GTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
           G K   HY     D  GTV D S+ RG+P E  +GK   +  W+  + TM++ E+A F C
Sbjct: 30  GTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLC 89

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQE-TERKKTLT 318
           ++EK +   L+ + G   +++   + A   Y  AI  L      E  G  E  +  + +T
Sbjct: 1   AEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQIT 60
Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
              LN   C L +++     D C   +    +N KA+F+RG A+  +   + A+ DF KV
Sbjct: 61  PLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKV 120
Query: 379 LQIDPNNKAAVQKLTQ 394
           L++DP     V +  Q
Sbjct: 121 LELDPALAPVVSRELQ 136

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTG-TLLDGTVFDSSKTRGEPFEFDLGK-GQVI 86
           D  V K+I   G G + PS      +HY   T      F+ +    +P E  LGK  + +
Sbjct: 48  DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKEL 106
Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQG--SPPTIPPDSTLVFEVEMISWE 137
                G+A+MK  E A+     E AYGK+G  S P +PP + L++EVE+I ++
Sbjct: 107 AGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           H N A C LKL+    A+ +  KAIE +  + KA +RR  A   L   + A  D Q+ + 
Sbjct: 68  HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127
Query: 381 IDPNNKAAVQKL 392
           ++P NK   + L
Sbjct: 128 LEPKNKVFQEAL 139

>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus Thermolithotrophicus Fkbp Length = 151

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 49  GCKVKVHYTGTLLDGTVFDSS-----KTRG--------EPFEFDLGKGQVIKAWDRGIAT 95
           G K+KV Y G L  G VFD+S     K  G        EP EF +G+GQ+I+ ++  +  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 96  MKKDEVAVFTCKPEYAYGKQ 115
           M+  +        E AYG +
Sbjct: 65  MEVGDEKTVKIPAEKAYGNR 84

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
           L++ + LK +   YFK   +E A + Y +AI     +  + G               N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG---------------NRS 47
Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           +  L+ +    A     +AIEL+    K ++RR  + + L +   A +D++ V+++ P++
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
Query: 386 KAAVQKLTQTKQKLREQKIKEKQV 409
           K A  K  Q   K+ +QK  E+ +
Sbjct: 108 KDAKMKY-QECNKIVKQKAFERAI 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-140
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-27
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-84
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-06
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-71
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	7e-54
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-71
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-68
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-05
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	8e-63
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-04
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-60
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-59
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-59
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	5e-58
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-57
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-57
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	3e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-05
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-54
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	1e-52
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-52
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-51
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-49
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	7e-05
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-49
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	7e-49
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	4e-48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-44
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-44
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	6e-44
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	1e-38
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	9e-34
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	1e-31
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-26
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-15
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	1e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-13
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	2e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-11
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	7e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-10
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	2e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	9e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	5e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	7e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  410 bits (1054), Expect = e-140
 Identities = 184/441 (41%), Positives = 271/441 (61%), Gaps = 7/441 (1%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
           + + I    D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F 
Sbjct: 21  QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 80

Query: 80  LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           LGKGQVIKAWD G+ATMK+ E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 81  LGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140

Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
           D+      GI R    +G  +S P +GA VEI L+G C G++F     +F +GEG ++DI
Sbjct: 141 DLFEDG--GIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDI 198

Query: 200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
           P  ++KALEK + +E+  L++ P++ +   G  K G+  N    Y +T+ +FEK K++W+
Sbjct: 199 PIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWE 258

Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
           +++ EKLEQ  ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +  L A
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
             LN AMC LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ DF+KVL
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 380 QIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTL 439
           +++P NKAA  +++  ++K +E   +++++YANMF KFA+ D ++E  +        K  
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMG-----KKT 433

Query: 440 GEWGAEERGRESTNFEKENPN 460
            E    E+G +S   E+E P 
Sbjct: 434 SEGVTNEKGTDSQAMEEEKPE 454

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  102 bits (256), Expect = 6e-24
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 15  RIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGE 74
            I +++ K  DL +DGG+++  K  G G + P+ G  V++H  G    G +FD       
Sbjct: 131 EIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGR-CGGRMFDC-----R 184

Query: 75  PFEFDLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFE 130
              F +G+G+   +    D+ +  M+++E  +    P Y +G+ G P   I P++ L++E
Sbjct: 185 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYE 244

Query: 131 VEMISWEAEDISPTHD 146
           V + S+E    S   D
Sbjct: 245 VTLKSFEKAKESWEMD 260

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  274 bits (703), Expect = 3e-89
 Identities = 119/321 (37%), Positives = 189/321 (58%), Gaps = 2/321 (0%)

Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSE 196
               +    DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG  
Sbjct: 17  RGSHMEE--DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGEN 74

Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
            D+P  LE+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K+
Sbjct: 75  LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 134

Query: 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT 316
           +W++NS+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +  
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194

Query: 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
             A HLN AMC LKL+    A + C+KA+EL+ NNEK   RRG A+L +N+ ELA  DFQ
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254

Query: 377 KVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM 436
           KVLQ+ PNNKAA  +L   +Q++R Q  +EK++YANMF++ A+ + + + E    +    
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTD 314

Query: 437 KTLGEWGAEERGRESTNFEKE 457
             + E          +  E E
Sbjct: 315 TEMKEEQKSNTAGSQSQVETE 335

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  110 bits (277), Expect = 3e-27
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 19  VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
           +  +   + +DGG+++ I+T G G   P+ G  V+V   G   D  +FD          F
Sbjct: 14  LVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQ-----RELRF 67

Query: 79  DLGKGQ---VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPT-IPPDSTLVFEVEMI 134
           ++G+G+   +    +R I  M+K E ++   KP YA+G  G     IPP++ L +E+ + 
Sbjct: 68  EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLK 127

Query: 135 SWEAED 140
           S+E   
Sbjct: 128 SFEKAK 133

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  261 bits (668), Expect = 1e-84
 Identities = 112/240 (46%), Positives = 151/240 (62%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
           E   I    D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct: 41  EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 100

Query: 80  LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           LGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct: 101 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 160

Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
           D++   DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+
Sbjct: 161 DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDL 220

Query: 200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
           P  LE+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K++W+
Sbjct: 221 PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 114 KQGSPPTIPPDSTLVFEVEMISWEAE-----------DISPTHDGGIRREILEEGASFST 162
                  + P  + +   EM + E+            DISP  D G+ + I  EG     
Sbjct: 7   HHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEM 66

Query: 163 PKDGANVEITLKGE-CEGKVF-----QEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKS 216
           P  G  V +   G   +G  F     ++  FSF LG+G    + +  + A+   K  E  
Sbjct: 67  PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGE---VIKAWDIAIATMKVGEVC 123

Query: 217 RLFVQPQ 223
            +  +P+
Sbjct: 124 HITCKPE 130

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  229 bits (586), Expect = 2e-71
 Identities = 96/245 (39%), Positives = 135/245 (55%), Gaps = 10/245 (4%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G+ K++   G G  TP  G +V+VHYTGTLLDG  FDSS+ R + F+F LG+GQVI
Sbjct: 8   IGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVI 67

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHD 146
           K WD+GI TMKK E A+FT  PE AYG+ GSPPTIP ++TL F+VE++SW         D
Sbjct: 68  KGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT-SVRDIAKD 126

Query: 147 GGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEG-TFSFVLGEGSEYDIPENLE 204
           GGI ++IL+EG  +  PKD   V +  +   E G V  +     F + +G    +   L 
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGH---LCPALA 183

Query: 205 KALEKFKYKEKSRLFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKIKDTWQL 260
           KA++  K  EK  L V+PQ+ +   G    G    VP N      + + +++ + +    
Sbjct: 184 KAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDD 243

Query: 261 NSDEK 265
               K
Sbjct: 244 KKILK 248

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  183 bits (466), Expect = 7e-54
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           G+ K+I   G     P    +V V Y   L DGTV   S    E  EF +  G +  A  
Sbjct: 128 GIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALA 183

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPP-----TIPPDSTLVFEVEMISWEAEDISPTH 145
           + + TMKK E  +   KP+Y +G+ G P       +PP+++LV ++E++SW+        
Sbjct: 184 KAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK-TVTEIGD 242

Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQ------EGTFSFVLGEGSEYD 198
           D  I +++L+E   +  P +GA V + + G+ + G VF       +  F F   E     
Sbjct: 243 DKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE---A 299

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLG-VPSNKPATYTITMNNFEK 253
           + E L++A+   K  E + + + P++ +    + +   VP N    Y + + +F K
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  155 bits (393), Expect = 3e-43
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVF-DSSKTRGEPFEFDLGKGQV 85
            DD  +LK++     G   P+ G  V V  TG L DGTVF        EPFEF   +  V
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 300

Query: 86  IKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP--TIPPDSTLVFEVEMISWEAE 139
           I+  DR +  MKK EVA+ T  PEYAYG   S     +PP+ST+++EVE++S+  +
Sbjct: 301 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  227 bits (579), Expect = 8e-71
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 29/342 (8%)

Query: 97  KKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEE 156
              E  + T      + +      +PP      EV              D  + ++I++E
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL-------------DEKVSKQIIKE 58

Query: 157 GASFSTPKDGANVEITLKGECEG-------KVFQEGTFSFVLGEGSEYDIPENLEKALEK 209
           G   S P   +   +  +   +           ++     VLG+  E      L   +  
Sbjct: 59  GHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGK--EKKELAGLAIGVAS 115

Query: 210 FKYKEKSRLFVQPQHLWSGKGNDKL-GVPSNKPATYTIT---MNNFEKIKDTWQLNSDEK 265
            K  E++ + V  +  +  +GN     VP      Y +     +  ++ K    +  +E+
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEER 175

Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE--GEQETERKKTLTACHLN 323
           +      K  G + FK++K E A + Y+ AI Y+  D  F+  G+ +         CHLN
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235

Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
            A CL+KLK+   A   C+  +  E  N KA FRRG A  +L + + A  DF+K  +  P
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295

Query: 384 NNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
           ++KA  ++L    ++ +    K+K++Y  +F    +   + +
Sbjct: 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  214 bits (546), Expect = 2e-68
 Identities = 77/135 (57%), Positives = 92/135 (68%), Gaps = 2/135 (1%)

Query: 19  VESKAIDLTD--DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPF 76
           +  + ID+T   DGGVLK IK  G G   P+ G  VKVHY GTL +GT FDSS+ RG+ F
Sbjct: 1   MSGEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQF 60

Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
            F+LG+G VIK WD G+ATM K EVA FT + +Y YG  GSPP IP  +TL+FEVE+  W
Sbjct: 61  SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 120

Query: 137 EAEDISPTHDGGIRR 151
            AEDISP  DG I R
Sbjct: 121 SAEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 134 ISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT-F 187
           +S E  DI+P  DGG+ + I +EG     P  G  V++   G  E G  F      G  F
Sbjct: 1   MSGEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQF 60

Query: 188 SFVLGEG 194
           SF LG G
Sbjct: 61  SFNLGRG 67

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  199 bits (507), Expect = 8e-63
 Identities = 66/120 (55%), Positives = 80/120 (66%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
           + + I    D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F 
Sbjct: 9   QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 68

Query: 80  LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           LGKGQVIKAWD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 69  LGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 133 MISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF----QEGT- 186
            ++ + EDI+   D G+ + +   G    TP  G  V +  KG+   GK F         
Sbjct: 5   TVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEP 64

Query: 187 FSFVLGEG 194
           F F LG+G
Sbjct: 65  FVFSLGKG 72

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  194 bits (494), Expect = 1e-60
 Identities = 66/120 (55%), Positives = 80/120 (66%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
           + + I    D GVLK +K  G G+ TP  G KV VHY G L +G  FDSS  R EPF F 
Sbjct: 25  QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 84

Query: 80  LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           LGKGQVIKAWD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FE+E++ ++ E
Sbjct: 85  LGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  189 bits (483), Expect = 2e-59
 Identities = 53/110 (48%), Positives = 67/110 (60%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
             +G V  +  +PG G T P  G  V +HYTGTL +G  FDSS  RG PF+ ++G GQVI
Sbjct: 3   VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVI 62

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
           K WD GI  +   E A  T    YAYG +G P  IPP+STLVF+VE++  
Sbjct: 63  KGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  188 bits (481), Expect = 3e-59
 Identities = 53/107 (49%), Positives = 67/107 (62%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  189 bits (481), Expect = 6e-59
 Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 3/124 (2%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGD--TTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPF 76
           E + ++LT DGGV+K I   G       P  G +V VHY G L   G VFDSS  R  PF
Sbjct: 6   EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPF 65

Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
           +F L +G+VIK WD  +++M+K+E  +   +  Y YG +G   +IP +S L+FE+E++S+
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

Query: 137 EAED 140
              +
Sbjct: 126 RELE 129

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  186 bits (475), Expect = 5e-58
 Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPFEF 78
             + +D++ D GVLK++   G GD   +    V V Y+G L      FDS+  R  P   
Sbjct: 16  SQRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLM 74

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
            LG+   +   + G+ +M++ E+A F  KP YAYG  G PP IPP++T++FE+E++ +
Sbjct: 75  KLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  185 bits (473), Expect = 1e-57
 Identities = 58/109 (53%), Positives = 77/109 (70%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           +    + K++ TPG G T P AG KV VHY G   DG  FDSS++RG+PF+F LG G+VI
Sbjct: 21  SMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVI 80

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           K WD+G+ATM   E A+FT   + AYG++G PP IPP +TLVFEVE+++
Sbjct: 81  KGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  186 bits (474), Expect = 6e-57
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 2/178 (1%)

Query: 250 NFEKI-KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE 308
            F+   K  +    +EK++    +KE G  +FK+++   A   YK+A+ +      ++ +
Sbjct: 18  YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77

Query: 309 QETERKKTL-TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
              ++KK +  +C+LN A C  K K    A D   K ++++ NN KA ++ G A +    
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 368 PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKE 425
            E A+++  K   ++PNN            KL+E + K+K  +  MFDK   ++ +K 
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  178 bits (455), Expect = 3e-55
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 24  IDLTDDGGVLKEIKTPG-VGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
           +D+  +G + K+   PG  G + P  G  V VH   +L +GT             F LG 
Sbjct: 7   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGD 62

Query: 83  GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
             VI+A D  +  M   E A+ T   +Y YG QG  P IPP + L  EV + +  
Sbjct: 63  CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 137 EAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT-FSFVLGE 193
           E  DI    +G +R++ L  G    S P  G  V + L+   E G   QE     F LG+
Sbjct: 5   EWLDI--LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 62

Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQ 223
               D+ + L+ ++      E + +    +
Sbjct: 63  C---DVIQALDLSVPLMDVGETAMVTADSK 89

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  176 bits (448), Expect = 3e-54
 Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSS-------KTRGEPFEFDLG 81
                K I   G     P  G  V   YTGTL DGTVFD++       K   +P  F +G
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSP-PTIPPDSTLVFEVEMISWE 137
            G+VI+ WD  + TM K E A    +PE+AYGK+G P   IPP++ L+FEVE++  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  171 bits (436), Expect = 1e-52
 Identities = 45/101 (44%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 40  GVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKD 99
           G        G  + +HYTG L DGT FDSS  + +PF F LG GQVIK WD+G+  M + 
Sbjct: 1   GSPIK-SRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 100 EVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAED 140
           E        E  YG++G+PP IP  +TLVFEVE++  E   
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRT 100

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  171 bits (435), Expect = 5e-52
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 24  IDLTDDGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
           +D+  +G + K+   PG    + P  G  V VH   +L +GT             F LG 
Sbjct: 11  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGD 66

Query: 83  GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEMISW-EAED 140
             VI+A D  +  M   E A+ T   +Y YG QGS  P IPP + L  EV + +  +  D
Sbjct: 67  CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD 126

Query: 141 ISP 143
           +  
Sbjct: 127 LEM 129

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 137 EAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT-FSFVLGE 193
           E  DI    +G +R++ L  G    S P  G  V + L+   E G   QE     F LG+
Sbjct: 9   EWLDI--LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 66

Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253
               D+ + L+ ++      E + +    ++ +  +G+    +P +      +T+     
Sbjct: 67  C---DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVD 123

Query: 254 IKDTWQ 259
             D   
Sbjct: 124 RPDLEM 129

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  169 bits (430), Expect = 6e-51
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD---FDGGFEGEQETERKKTL 317
             D+KL+  + L+++G   F Q  ++ A   Y+ A+  LD           +  E  +  
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
              + N + C L +     A++   + ++ E  NEKA FRR  A +   + + AE+D + 
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 378 VLQIDPNNKAAVQK-LTQTKQKLREQKIKEKQVYANMF 414
           +L+  P   + V + +    ++  E+K   +  Y+ MF
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  165 bits (420), Expect = 1e-49
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVG-DTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEF 78
             + +D+  +G + K+   PG    + P  G  V VH   +L +GT             F
Sbjct: 33  PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVF 88

Query: 79  DLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGS-PPTIPPDSTLVFEVEMISW- 136
            LG   VI+A D  +  M   E A+ T   +Y YG QGS  P IPP + L  EV + +  
Sbjct: 89  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 148

Query: 137 EAEDISPTH 145
           + E     H
Sbjct: 149 DLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 130 EVEMISWEAEDISPTHDGGIRREILEEG-ASFSTPKDGANVEITLKGECE-GKVFQEGT- 186
           E        E +    +G +R++ L  G    S P  G  V + L+   E G   QE   
Sbjct: 26  EPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE 85

Query: 187 FSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTI 246
             F LG+    D+ + L+ ++      E + +    ++ +  +G+    +P +      +
Sbjct: 86  LVFTLGDC---DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEV 142

Query: 247 TMNNFEKIKDTWQLN 261
           T+     ++     +
Sbjct: 143 TLKTAVDLEHHHHHH 157

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  163 bits (416), Expect = 3e-49
 Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G VI
Sbjct: 25  TTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVI 83

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           K WD G+  MK   V   T  P+  YG +G+   IPP++TLVFEVE++ 
Sbjct: 84  KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  164 bits (417), Expect = 7e-49
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGT-VFDSSKTRGEPFEFDLGK-GQ 84
             D  V K+I   G G   PS      +HY     +    F+ +    +P E  LGK  +
Sbjct: 46  VLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKK 104

Query: 85  VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQG--SPPTIPPDSTLVFEVEMISWEAEDIS 142
            +     G+A+MK  E A+     E AYGK+G  S P +PP + L++EVE+I ++     
Sbjct: 105 ELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

Query: 143 PTHDGGIRREILEEG 157
                    E +   
Sbjct: 165 KARSDMTVEERIGAA 179

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  163 bits (415), Expect = 4e-48
 Identities = 53/109 (48%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T + G+  E  T G G     AG  V VHYTG L DG  FDSSK R +PF F LG G VI
Sbjct: 101 TTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVI 159

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           K WD G+  MK   V   T  P+  YG +G+   IPP++TLVFEVE++ 
Sbjct: 160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  159 bits (403), Expect = 2e-44
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 256 DTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD-FDGGFEGEQETERK 314
           D    + D+ L   + LK  G T+FK   +E+A + Y K + Y++      E     + +
Sbjct: 210 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 269

Query: 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD 374
               +C LN   C LK+   + A D C +A+E++P+N KA +RR   +  L E + A  D
Sbjct: 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329

Query: 375 FQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF 414
            +K  +I P +KA   +L + KQK++ QK KEK  YA MF
Sbjct: 330 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  150 bits (380), Expect = 4e-44
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 20  ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTL-LDGTVFDSSKTR--GEPF 76
           +S    + +    ++ ++ P +       G  + VHY G L  DG++F S+     G+P 
Sbjct: 3   QSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPI 62

Query: 77  EFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISW 136
            F LG  + +K WD+G+  M   E       P   YGK+G    IPP+STL+F ++++  
Sbjct: 63  WFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLEI 121

Query: 137 E 137
            
Sbjct: 122 R 122

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  149 bits (379), Expect = 6e-44
 Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G+    K  G G      G  +K HY G L +G VFDSS  RG+P  F +G G+VI
Sbjct: 9   VSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVI 67

Query: 87  KAWDRGI------ATMKKDEVAVFTCKPEYAYGKQG-----SPPTIPPDSTLVFEVEMIS 135
           K WD+GI        M           PE AYG +G         IPP S L+F++E I 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

Query: 136 W 136
            
Sbjct: 128 K 128

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  137 bits (346), Expect = 1e-38
 Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G++ +    G G   P+   K +VHYTG L DGTVFDSS+ RG+P  F     +VI
Sbjct: 34  KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVI 91

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           K W   +  M++ +        + AYG  G    IPP S L F+VE+IS
Sbjct: 92  KGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  125 bits (316), Expect = 9e-34
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           G+  ++   G G   P     V V YTG L+DGTVFDS++  G+P  F +   QVI  W 
Sbjct: 107 GLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWT 163

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
             +  M              AYG +     I P+ TL+F++ +IS
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  120 bits (302), Expect = 1e-31
 Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T   G++ ++   G G+  P     V V+Y GTL+DG  FD+S TRGEP  F L    VI
Sbjct: 118 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVI 174

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
             W  G+  +KK         PE AYGK G P  IPP+STLVF+VE++ 
Sbjct: 175 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  119 bits (301), Expect = 1e-31
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           G+L    TPG G   P A  +V+V Y G L DG +FD S    +P  F L    VI  W 
Sbjct: 118 GILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWT 171

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
             +  M            + AYG +G+   I P + LVFE+E+I+
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  111 bits (279), Expect = 2e-29
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           +       + L++ G   FK   +  A   Y +A+                  +     H
Sbjct: 21  ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD------------ATPQDQAVLH 68

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
            N A C LKL+    A+ +  KAIE +  + KA +RR  A   L   + A  D Q+ + +
Sbjct: 69  RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

Query: 382 DPNNKAAVQKLTQ 394
           +P NK   + L  
Sbjct: 129 EPKNKVFQEALRN 141

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  108 bits (273), Expect = 1e-28
 Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 15/142 (10%)

Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
           L S+E   + + LK  G    K + FE A   Y KAI               E       
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI---------------ELNPANAV 47

Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
              N A    KL     A   C++AI ++P   KA+ R G A   LN+   A   ++K L
Sbjct: 48  YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
           ++DP+N+     L   + KLRE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  109 bits (274), Expect = 2e-28
 Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           +D  L++ + LK +   YFK   +E A + Y +AI               E   +    +
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYY 50

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
            N ++  L+ +    A     +AIEL+    K ++RR  + + L +   A +D++ V+++
Sbjct: 51  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

Query: 382 DPNNKAAVQKLTQTKQKLREQK----IKEKQVYANMFDKFAKHDTEKEEEEK 429
            P++K A  K  +  + ++++     I   +   ++ D         E+E  
Sbjct: 111 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 162

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  103 bits (258), Expect = 2e-26
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
              + LKE+G   F   K+  A   Y +AI                R   +   + N A+
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRAL 51

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
           C LK++Q + A   C +A+EL+  + KA F  G   L++   + A  + Q+   +    +
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 387 AAVQKLTQTKQKLREQKIKEKQ 408
                   +  ++ ++K     
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSI 133

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  101 bits (255), Expect = 3e-26
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           E  +  K +G  YFK+  +  A R+Y +A+               +R       + N A 
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---------------KRDPENAILYSNRAA 55

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
           CL KL + + A D CD  I L+    K + R+    + + E   A++ ++  LQ+DP+N+
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 387 AAVQKLTQTKQ 397
            A + +    +
Sbjct: 116 EAREGVRNCLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  101 bits (255), Expect = 3e-26
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
            +  G  YF +  +  A + Y + I               +R       + N A  L KL
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKL 51

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP--NNKAAV 389
                A   C+KAIE +PN  +A+ R+  A + + E   A +        D   NN ++ 
Sbjct: 52  MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111

Query: 390 QKLTQTKQKLREQK 403
           +++ Q   K  +Q+
Sbjct: 112 REIDQLYYKASQQR 125

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  101 bits (254), Expect = 6e-26
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +K +G   F++  +  A ++Y +AI               +R       + N A C  KL
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAI---------------KRNPKDAKLYSNRAACYTKL 63

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
            + + A   C++ I+LEP   K + R+  A   + +   A   +QK L +D + K A   
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 392 LTQTKQKLR 400
             +      
Sbjct: 124 YQRCMMAQY 132

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  100 bits (251), Expect = 1e-25
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
           +EQ   LKE+G         + A + Y +AI               +        + N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAI---------------KLDPHNHVLYSNRS 45

Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
               K    + A +   K ++L+P+  K + R+  A   LN  E A++ +++ L+ + NN
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 386 KAAVQKLTQTKQK 398
               + L   + +
Sbjct: 106 PQLKEGLQNMEAR 118

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  105 bits (265), Expect = 7e-25
 Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 25/171 (14%)

Query: 266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAA 325
           L++ + LK +   YFK   +E A + Y +AI               E   +    + N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYYGNRS 47

Query: 326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           +  L+ +    A     +AIEL+    K ++RR  + + L +   A +D++ V+++ P++
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVM 436
           K A  K  +  + ++++           F++    D  K       + + M
Sbjct: 108 KDAKMKYQECNKIVKQKA----------FERAIAGDEHKRSVVDSLDIESM 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 97.1 bits (242), Expect = 5e-24
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           LK  G     + ++  A   Y +A+                          N A      
Sbjct: 14  LKSEGNAAMARKEYSKAIDLYTQAL---------------SIAPANPIYLSNRAAAYSAS 58

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
            Q + A +  + A  ++P   KA+ R G A  D+ + + A++ ++K ++ + N  +   K
Sbjct: 59  GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118

Query: 392 --LTQTKQKLREQKIKEKQ 408
             L  TK+K+ E     + 
Sbjct: 119 RGLETTKRKIEEANRGAEP 137

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  100 bits (251), Expect = 2e-23
 Identities = 22/143 (15%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
           ++++   L E      +  ++  A   Y+  +           + E    +         
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVM-----------KTEPSVAEYTVRSKERI 278

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
             C  K ++   A   C + +++EP+N  A   R  AYL     + A +D++   + + N
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 385 NKAAVQKLTQTKQKLREQKIKEK 407
           ++   + L + ++ L  ++ +++
Sbjct: 339 DQQIREGLEKAQRLL--KQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 93.1 bits (232), Expect = 6e-21
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
             E G       +   A   +  A+               +        +   A   L +
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYYRRATVFLAM 50

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
            ++K A     K I L+ +   A  +RG+  L   + + AE DF+KVL+ +P+ +   + 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 392 LTQTKQKLREQKIKEKQVYA 411
            +Q  +    Q+++ + + A
Sbjct: 111 ESQLVKADEMQRLRSQALDA 130

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
           K ++ + L+ +    F    +  A     K +               E            
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKIL---------------EVCVWDAELRELR 160

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
           A C +K  + + A      A +L+ +N +AF++    Y  L + EL+  + ++ L++D +
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 385 NKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
           +K       Q K+  +  +  E+ +    +  
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 30/129 (23%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           R T +    K + A  +  K I                 K   TA  L     LLK  + 
Sbjct: 43  RATVFLAMGKSKAALPDLTKVI---------------ALKMDFTAARLQRGHLLLKQGKL 87

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGN---------------AYLDLNEPELAEKDFQKVL 379
             A+D   K ++  P+ ++                         D  +   A     K+L
Sbjct: 88  DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147

Query: 380 QIDPNNKAA 388
           ++   +   
Sbjct: 148 EVCVWDAEL 156

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 97.3 bits (242), Expect = 7e-23
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 19/187 (10%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           LKE+G   F   K+  A   Y +AI                R   +   + N A+C LK+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKM 51

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +Q + A   C +A+EL+  + KA F  G   L++   + A  + Q+   +    +     
Sbjct: 52  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

Query: 392 LTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAEERGRES 451
              +  ++ ++K            +  +         +    +  + L E      G E 
Sbjct: 112 DIPSALRIAKKKRWNSIEER----RIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 452 TNFEKEN 458
               +  
Sbjct: 168 DGHIRAQ 174

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           L E      +  ++  A   Y+  +           + E    +           C  K 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVM-----------KTEPSIAEYTVRSKERICHCFSKD 308

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           ++   A   C + +++EP+N  A   R  AYL     + A +D++   + + N++   + 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368

Query: 392 LTQTKQKLREQKIKE----------------KQVYANMF-----DKFAKHDTEKEEEEKK 430
           L + ++ L++ + ++                 + Y  +      D F   + +K+ E+K 
Sbjct: 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428

Query: 431 KE 432
            +
Sbjct: 429 ID 430

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 21/157 (13%)

Query: 263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHL 322
            + +   +   E G       +   A   +  A+               +        + 
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYY 64

Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
             A   L + ++K A     K I+L+ +   A  +RG+  L   + + AE DF+KVL+ +
Sbjct: 65  RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK 419
           P+     +  +Q        K  E Q   +       
Sbjct: 125 PSENEEKEAQSQL------IKSDEMQRLRSQALNAFG 155

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
           K ++ + L+ +    F    +  A     K +               E            
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL---------------EVCVWDAELRELR 183

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
           A C +K  + + A      A +L+ +N +AF++    Y  L + EL+  + ++ L++D +
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 385 NKAAVQKLTQTKQKLREQKIKEKQVYANMFDK 416
           +K       Q K+  +  +  E+ +    +  
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 30/142 (21%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           R T +    K + A  +  K I               + K   TA  L     LLK  + 
Sbjct: 66  RATVFLAMGKSKAALPDLTKVI---------------QLKMDFTAARLQRGHLLLKQGKL 110

Query: 335 KPAKDQCDKAIELEPNNEKA---------------FFRRGNAYLDLNEPELAEKDFQKVL 379
             A+D   K ++  P+  +                   +        +   A     K+L
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170

Query: 380 QIDPNNKAAVQKLTQTKQKLRE 401
           ++   +    +   +   K  E
Sbjct: 171 EVCVWDAELRELRAECFIKEGE 192

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 14/135 (10%), Positives = 42/135 (31%), Gaps = 27/135 (20%)

Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
           +L + R   + K+ +   A  + K A                + K   T      +    
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAAS---------------KLKNDNTEAFYKISTLYY 222

Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAF------------FRRGNAYLDLNEPELAEKDFQK 377
           +L   + +  +  + ++L+ ++++ F                   +       A   ++ 
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282

Query: 378 VLQIDPNNKAAVQKL 392
           V++ +P+      + 
Sbjct: 283 VMKTEPSIAEYTVRS 297

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 23/144 (15%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           +Q    KE G   +K+  F+ A ++Y KA                E   T      N A 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAK---------------ELDPTNMTYITNQAA 46

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVL 379
              +       ++ C+KAIE+   N        KA+ R GN+Y    + + A   + K L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 380 QIDPNNKAAVQKLTQTKQKLREQK 403
                     +K  Q ++ L+EQ+
Sbjct: 107 AEHRTPDVL-KKCQQAEKILKEQE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
           +  G  YF +  +  A + Y + I               +R       + N A  L KL 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKLM 187

Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA--VQ 390
               A   C+KAIE +PN  +A+ R+  A + + E   A +        D         +
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247

Query: 391 KLTQTKQKLRE 401
           ++ Q   K  +
Sbjct: 248 EIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
            K  G  ++K  +F+ A  +Y KA                E  K +T    N A    + 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAW---------------ELHKDITY-LNNRAAAEYEK 51

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
            + + A    + A+E        +     ++  +        D +K ++    +    + 
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111

Query: 392 -LTQTKQKLREQKIKE 406
               TK +  E+++K+
Sbjct: 112 ADILTKLRNAEKELKK 127

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 15/114 (13%), Positives = 24/114 (21%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                 K    E   +  +                                         
Sbjct: 111 TADILTKLRNAEKELKKAEAEA---------------YVNPEKAEEARLEGKEYFTKSDW 155

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A     + I+  P + + +  R  A   L     A  D  K ++ DPN   A
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 16/114 (14%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
              ++ +         + KK I               E  +     H   A  L KL+ A
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTI---------------EYYQKSLTEH-RTADILTKLRNA 121

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +    + +    + P   +     G  Y   ++   A K + ++++  P +   
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-----NKAAV 389
            +        GN +    + + A + + K  ++  +     N+AA 
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAA 47

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 86.6 bits (215), Expect = 1e-20
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 23/143 (16%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           S+   +     K+ G   +KQ  FE A  +Y KAI               E   +    +
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI---------------ELDPSNITFY 45

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKD 374
            N A    + K+       C+KA+E+            KA  R GNA+   N+  LA + 
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 375 FQKVLQIDPNNKAAVQKLTQTKQ 397
           F + L    + +   +K+ + ++
Sbjct: 106 FHRSLSEFRDPELV-KKVKELEK 127

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 16/201 (7%)

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
              +  L    Y E +    +  +  S               ++T     FE+  D    
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
           +   K +    L+  G   F ++    A  + KKAI               E    + + 
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI---------------ELFPRVNS- 272

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           ++  A+ +     +    +  DKA++L+ NN   ++ RG     L   + A KDF K  +
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332

Query: 381 IDPNNKAAVQKLTQTKQKLRE 401
           +DP N     +L     +  +
Sbjct: 333 LDPENIFPYIQLACLAYRENK 353

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 24/147 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                  ++ F+ A + Y  AI               E +  L   ++  A  + K    
Sbjct: 378 FAEILTDKNDFDKALKQYDLAI---------------ELENKLDGIYVGIAPLVGKATLL 422

Query: 335 KPAKDQ---------CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
                           +KA +L+P +E+A        L   + + A   F++   +    
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

Query: 386 KAAVQKLTQTKQKLREQKIKEKQVYAN 412
           +  +Q +T  +    +Q+I+   V A 
Sbjct: 483 EEKLQAITFAEAAKVQQRIRSDPVLAK 509

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 17/170 (10%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           LK++G  +F+  K++ A + Y  A+                  K     + N + C + +
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWAL----------------ELKEDPVFYSNLSACYVSV 52

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV-LQIDPNNKAAVQ 390
              K   +   KA+EL+P+  K   RR +A   L +   A  D   + L  D N+ +   
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112

Query: 391 KLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLG 440
            L +   K    K+KEK    +         + +  +E+K + + + ++ 
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           RG   F    ++ A +++ KA                E        ++  A    +  + 
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK---------------ELDPENIFPYIQLACLAYRENKF 354

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
              +    +A    P   +          D N+ + A K +   ++++      
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                  ++        + KA+               +     ++ + +       L+  
Sbjct: 276 MALIMADRNDSTEYYNYFDKAL---------------KLDSNNSSVYYHRGQMNFILQNY 320

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
             A    DKA EL+P N   + +        N+ +  E  F +  +  P  
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
                  +  F+ A + Y  A         +    G      K T+ A   +     L  
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEE--VQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           ++   A     KA EL+P +E+A        L + + + A + F+    +       +Q 
Sbjct: 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501

Query: 392 LTQTKQKLREQKIKEKQVYANMFDKFAK 419
            T  +    +++++   + +   +    
Sbjct: 502 TTFAEAAKIQKRLRADPIISAKMELTLA 529

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 248 MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG 307
            + +  +     ++   +      L   G  +F ++    A    +++I           
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI----------- 270

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
                   T  + ++  A+ L   + ++       KA++L P     ++ RG  Y  L +
Sbjct: 271 ----NLHPTPNS-YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325

Query: 368 PELAEKDFQKVLQIDPNNKAA 388
            + A++DFQK   ++P N   
Sbjct: 326 YKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.5 bits (204), Expect = 6e-17
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 15/154 (9%)

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
            L+  ++      LK RG  +F    F  A + Y+ AI               E      
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---------------ELDPNEP 59

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
             + N + C +     +   +   KA+E++P++ KA  RR +A   L     A  D   +
Sbjct: 60  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYAN 412
                 + A+++ + +     +  K+  + +  +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           RG  YF    ++ A  +++KA                         ++  A  L K  + 
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQ---------------SLNPENVYPYIQLACLLYKQGKF 360

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             ++   ++     P   +          D  + + A K +    +++   +  
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 31/195 (15%), Positives = 52/195 (26%), Gaps = 40/195 (20%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                +KQ KF  +   + +                  +  TL       A  L      
Sbjct: 350 LACLLYKQGKFTESEAFFNETK---------------LKFPTLPEVPTFFAEILTDRGDF 394

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNA----------------YLDLNEPELAEKDFQKV 378
             A  Q D A  LE   EK     G                   LD  +   A K   K 
Sbjct: 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454

Query: 379 LQIDPNNKAAVQKLTQTKQKLREQK---------IKEKQVYANMFDKFAKHDTEKEEEEK 429
            ++DP ++ A   L Q K ++ +               +            +  K ++  
Sbjct: 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 514

Query: 430 KKEPDVMKTLGEWGA 444
           + +P +   +    A
Sbjct: 515 RADPIISAKMELTLA 529

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
              T   ++  +   + ++KA+               +        + +       L+  
Sbjct: 282 LALTLADKENSQEFFKFFQKAV---------------DLNPEYPPTYYHRGQMYFILQDY 326

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           K AK+   KA  L P N   + +         +   +E  F +     P  
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343
                  +  +                  +++       N        K    A      
Sbjct: 2   SHMNGEPDIAQLK-----------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQY 50

Query: 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           AIEL+PN    +      Y+   + E   +   K L+I P++  A
Sbjct: 51  AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 18/188 (9%), Positives = 40/188 (21%), Gaps = 17/188 (9%)

Query: 201 ENLEKALEKFKYKEKSRLFVQPQ-HLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQ 259
            N   A+        +  F          +  +K  +               + +     
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166

Query: 260 LNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA 319
           L S   +    L     ++      ++ A      A+             +     T   
Sbjct: 167 LASFFGIFDSHL---EVSSVNTSSNYDTAYALLSDAL-------------QRLYSATDEG 210

Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
             +   +                    L  N   A    G  +   N    A+   Q+ +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 380 QIDPNNKA 387
            + P   +
Sbjct: 271 NLHPTPNS 278

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 83.1 bits (206), Expect = 5e-18
 Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G    K+ +  LA + Y+ A+               +R  T    +             
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAV---------------DRDTTRLDMYGQIGSYFYNKGNF 124

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
             A    +K I     + K F+  G AY    E   A+  F KVL++ PN         +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184

Query: 395 TKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLG 440
                     +        ++K  +       + K +  +  + + 
Sbjct: 185 ANAAQDPDTKQGLAKPY--YEKLIEVCAPGGAKYKDELIEANEYIA 228

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 18/117 (15%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ- 333
                FK + +  A   + K                  +K      +   A+C  +L + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLE---------------AKKYNSPYIYNRRAVCYYELAKY 53

Query: 334 --AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A+   +     +         F   G   +   +  LA + +Q  +  D      
Sbjct: 54  DLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+   ++  A  ++ K +               E K  +   +L  A         
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVL---------------ELKPNIYIGYLWRARANAAQDPD 192

Query: 335 ---KPAKDQCDKAIELEPNNEK--------AFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
                AK   +K IE+              A       Y    +   A+  ++ +L +DP
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

Query: 384 NNKAAVQKLTQTKQKLREQ 402
            NK A+  L    +     
Sbjct: 253 TNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 275 RGTTYFKQDKFELA---CRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           R   Y++  K++LA      Y   +                  K  +A        L+K 
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKV---------------NATKAKSADFEYYGKILMKK 87

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            Q   A  Q   A++ +      + + G+ + +     LA +  +K ++    +   
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 18/122 (14%)

Query: 273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK 332
            + G+ ++ +  F LA +  +K I                   T               K
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQI---------------RPTTTDPKVFYELGQAYYYNK 156

Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN---EPELAEKDFQKVLQIDPNNKAAV 389
           +   A     K +EL+PN    +  R  A    +   +  LA+  ++K++++     A  
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

Query: 390 QK 391
           + 
Sbjct: 217 KD 218

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD---FQK 377
               A  L K      A +  +K    + N+   + RR   Y +L + +LA+KD   +  
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 378 VLQIDPNNKAA 388
            +       A 
Sbjct: 66  KVNATKAKSAD 76

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           N+   FR  +     N    A + F K+     N+   
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
            LL E G   F +   + A  +++ A+           ++    +K   A   N      
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLL--------VKKTQSNEKPWAATWANLGHAYR 527

Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV 389
           KLK    A D  ++ + L  N+          YL    P LA     + L I PN   A 
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587

Query: 390 QKLTQTKQK 398
             L +  ++
Sbjct: 588 DLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 15/118 (12%)

Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
           LL  +  T F + +F        K +               E        +      L +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKIL---------------EIDPYNLDVYPLHLASLHE 351

Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             +        +  ++  P     +   G  YL +N+   A + F K   +DP    A
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y   +K   A R + K+                          +  A       + 
Sbjct: 379 VGIYYLCVNKISEARRYFSKSS---------------TMDPQFGPAWIGFAHSFAIEGEH 423

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
             A      A  L       +   G  ++ L    LA +  Q    +   +
Sbjct: 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 15/125 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
              ++  + + + A   Y  A                   +     +L   M  ++L   
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAA---------------RLFQGTHLPYLFLGMQHMQLGNI 457

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
             A +    +  L   +       G    + ++ + A   FQ  L +    ++  +    
Sbjct: 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517

Query: 395 TKQKL 399
           T   L
Sbjct: 518 TWANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 9/111 (8%), Positives = 29/111 (26%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
              +  +  +           +               +R        L   +  L + + 
Sbjct: 345 HLASLHESGEKNKLYLISNDLV---------------DRHPEKAVTWLAVGIYYLCVNKI 389

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
             A+    K+  ++P    A+    +++    E + A   +    ++    
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 22/136 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---PY-------------------LDFDGGFEGEQETE 312
           RG  Y     F+ A   YK+A+                         D          ++
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
                        +     +      +    +I     +      + +     +      
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 373 KDFQKVLQIDPNNKAA 388
               K+L+IDP N   
Sbjct: 326 AITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 30/134 (22%)

Query: 282 QDKFELA-----CRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP 336
            D F LA       +Y +A   L          + +     +AC   AA CL+KL   + 
Sbjct: 118 NDAFWLAQVYCCTGDYARAKCLL---------TKEDLYNRSSACRYLAAFCLVKLYDWQG 168

Query: 337 AKDQCDKAIELEPNNEK----------------AFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           A +   +      + +                   + RG  Y +L+  + A++ +++ L 
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228

Query: 381 IDPNNKAAVQKLTQ 394
           +D     A  +L  
Sbjct: 229 VDAKCYEAFDQLVS 242

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 19/168 (11%), Positives = 45/168 (26%), Gaps = 11/168 (6%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC-HLNAAMCLLKLKQ 333
                 K   ++ A     +  P+   +         +    L A            L  
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
              AK+   +A+ ++    +AF +  + +L   + E               + A ++ L 
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275

Query: 394 QTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGE 441
             K      + + +             D        +K  D++    +
Sbjct: 276 MLKLNKTSHEDELR----------RAEDYLSSINGLEKSSDLLLCKAD 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
           ++ E G   F+  +++ A + +  A+  +      +                N      K
Sbjct: 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKI------KAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
           LK+   A D   +A+ L P N   +   G  +  +   E A   F   L +  ++  +V 
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308

Query: 391 KLTQTKQKL 399
            L    +  
Sbjct: 309 MLGHCIEMY 317

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 17/141 (12%)

Query: 250 NFEKIKDTWQLNSDEKLEQ-GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE 308
           ++ K  +T    S + L++   ++      ++    F++  +     +            
Sbjct: 2   SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM------------ 49

Query: 309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL-NE 367
              E+     +C       L++L +A        K ++L P+N  ++F  G  YL + ++
Sbjct: 50  ---EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106

Query: 368 PELAEKDFQKVLQIDPNNKAA 388
            E A +   K   ++     A
Sbjct: 107 NEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 16/112 (14%)

Query: 275 RGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
            G  Y     K E A R   KA                  +KT     +          +
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKAT---------------TLEKTYGPAWIAYGHSFAVESE 140

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
              A      A +L           G  Y   N  +LAE+ F + L I P +
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 15/117 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G ++  + + + A   Y  A                +  K      L   +       +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAA---------------QLMKGCHLPMLYIGLEYGLTNNS 175

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           K A+    +A+ + P +       G       E + AEK F   L+        V  
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 16/115 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-KQ 333
              T  + +K         K +               +   +            L +  +
Sbjct: 62  HIGTLVELNKANELFYLSHKLV---------------DLYPSNPVSWFAVGCYYLMVGHK 106

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            + A+    KA  LE     A+   G+++   +E + A   +    Q+       
Sbjct: 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 15/97 (15%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G    K  K+  A   +++A+                      + +         +   
Sbjct: 242 LGHVCRKLKKYAEALDYHRQAL---------------VLIPQNASTYSAIGYIHSLMGNF 286

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELA 371
           + A D    A+ L  ++  +    G+          A
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 303 GGFEGEQETERKKTLTA------CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF 356
           G +    ET   +++          ++ A         K         +E +P +     
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
                 ++LN+         K++ + P+N
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSN 89

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                   ++ E A   Y KA+               E   +    +  A    +  +  
Sbjct: 63  FANLLSSVNELERALAFYDKAL---------------ELDSSAATAYYGAGNVYVVKEMY 107

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           K AKD  +KA+     N   F+  G   + L +P+LA    Q+ ++++ N+  A
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            GT   K ++ +LA    ++A+               E  +  T       MCL      
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAV---------------ELNENDTEARFQFGMCLANEGML 175

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A  Q     E +P +  AF+  G  Y      E A +   K + I P++  A
Sbjct: 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y  ++ ++ A   ++KA+                               L+KL+Q 
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKAL---------------RAGMENGDLFYMLGTVLVKLEQP 141

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           K A     +A+EL  N+ +A F+ G    +    + A   F  V + DP +  A
Sbjct: 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.2 bits (173), Expect = 7e-14
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           +     +   +E A   + KAI               E  K     ++N A  L  + + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAI---------------EENKEDAIPYINFANLLSSVNEL 73

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + A    DKA+EL+ +   A++  GN Y+     + A+  F+K L+    N   
Sbjct: 74  ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
                    +    + A +   KAIE    +   +    N    +NE E A   + K L+
Sbjct: 26  GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85

Query: 381 IDPNNKAA 388
           +D +   A
Sbjct: 86  LDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 15/93 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G     +   + A   +                   E+         NA +     +  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVT---------------EQDPGHADAFYNAGVTYAYKENR 209

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
           + A +  DKAI+++P++  A   +       + 
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYL----DLNEPELAEKDFQKVLQIDPNNKAA 388
           +      +  L P         G   +    +  + E A + F K ++ +  +   
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 79.0 bits (195), Expect = 4e-17
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 1/140 (0%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPY-LDFDGGFEGEQETERKKTLTACHLNAAMCLLK 330
           + ++ +   +  +   A   +++ I   +D    +      +  +  +      A+   K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
            +    A     + ++  PNN           +   + + A + ++K+LQ++ +N AA  
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126

Query: 391 KLTQTKQKLREQKIKEKQVY 410
            L        EQ+ K+ +  
Sbjct: 127 FLGNYYYLTAEQEKKKLETD 146

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL-LK 330
           L+        + + + A R Y+K +               + +    A ++       L 
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKIL---------------QLEADNLAANIFLGNYYYLT 135

Query: 331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
            +Q K   +   K +      + A +R G + L     E A    QKV+   P+   A +
Sbjct: 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQK 194

Query: 391 KLTQTKQKLRE 401
            L +  +  +E
Sbjct: 195 TLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 16/145 (11%)

Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
           W           KL  E    Y K   ++ A   YK+ +               ++    
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL---------------QKAPNN 87

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPEL-AEKDFQ 376
             C    A   +   Q K A    +K ++LE +N  A    GN Y    E E    +   
Sbjct: 88  VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

Query: 377 KVLQIDPNNKAAVQKLTQTKQKLRE 401
           K L      + A  +   +K     
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTR 172

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 76.7 bits (189), Expect = 6e-17
 Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 18/135 (13%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           L   G   ++  K++ A + ++                            L    C   L
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALC---------------MLDHYDARYFLGLGACRQSL 65

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAA 388
              + A         ++ N  +  F     +L L + + AE  F     +       +A 
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 389 VQKLTQTKQKLREQK 403
             +     + +  +K
Sbjct: 126 AARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
               L  +  +  +  G       + + A+K FQ +  +D  +      L   +Q L  
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           ERG  Y       LA  ++ +A+                 +  +        + L +   
Sbjct: 48  ERGVLYDSLGLRALARNDFSQAL---------------AIRPDMPEVFNYLGIYLTQAGN 92

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
              A +  D  +EL+P    A   RG A       +LA+ D     Q DPN+      L 
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152

Query: 394 QTKQKLREQKIKE 406
             +QKL E++ KE
Sbjct: 153 LAEQKLDEKQAKE 165

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 23/136 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAI------PYLDFDGGFEGEQETERKKTLTAC-------- 320
           RG   +   + +LA  +           P+         EQ+ + K+             
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSD 175

Query: 321 -----HLNAAMCLLKLKQA---KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
                       L  + +    +  K        L  +  +  F  G  YL L + + A 
Sbjct: 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235

Query: 373 KDFQKVLQIDPNNKAA 388
             F+  +  + +N   
Sbjct: 236 ALFKLAVANNVHNFVE 251

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           S+    + ++L           + E+     ++ +                         
Sbjct: 1   SNTSWRKSEVL---AVPLQPTLQQEVILARMEQIL-----------ASRALTDDERAQLL 46

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
               +    L     A++   +A+ + P+  + F   G         + A + F  VL++
Sbjct: 47  YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106

Query: 382 DPNNKAA 388
           DP    A
Sbjct: 107 DPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 16/128 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G    +   F+ A   +   +               E   T    HLN  + L    + 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVL---------------ELDPTYNYAHLNRGIALYYGGRD 127

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           K A+D      + +PN+         A   L+E + A++  ++  +     +     +  
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEF 186

Query: 395 TKQKLREQ 402
               + EQ
Sbjct: 187 YLGNISEQ 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 9/100 (9%), Positives = 20/100 (20%), Gaps = 15/100 (15%)

Query: 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337
              +Q   E    +                       + L+  +       L L     A
Sbjct: 190 NISEQTLMERLKADATDNT---------------SLAEHLSETNFYLGKYYLSLGDLDSA 234

Query: 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
                 A+    +N             L + +    +  +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.0 bits (193), Expect = 9e-16
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G       + E A   Y KAI               E +        N         + 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAI---------------ETQPNFAVAWSNLGCVFNAQGEI 185

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A    +KA+ L+PN   A+   GN   +    + A   + + L + PN+   
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 15/127 (11%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                 ++     A   Y  A+                   T      N A    +    
Sbjct: 277 LANALKEKGSVAEAEDCYNTAL---------------RLCPTHADSLNNLANIKREQGNI 321

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           + A     KA+E+ P    A     +      + + A   +++ ++I P    A   +  
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381

Query: 395 TKQKLRE 401
           T +++++
Sbjct: 382 TLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                      E A + Y  A+               +    L     +    L  L + 
Sbjct: 107 LAAALVAAGDMEGAVQAYVSAL---------------QYNPDLYCVRSDLGNLLKALGRL 151

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + AK    KAIE +PN   A+   G  +    E  LA   F+K + +DPN   A
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 3e-15
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
               Y++Q   +LA   Y++AI               E +      + N A  L +    
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI---------------ELQPHFPDAYCNLANALKEKGSV 287

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A+D  + A+ L P +  +     N   +    E A + ++K L++ P   AA
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y ++ + + A  +Y+ A+                 K      ++N A  L+     
Sbjct: 73  LGNVYKERGQLQEAIEHYRHAL---------------RLKPDFIDGYINLAAALVAAGDM 117

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + A      A++  P+        GN    L   E A+  + K ++  PN   A
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  +  Q +  LA  +++KA+                        ++N    L + +  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAV---------------TLDPNFLDAYINLGNVLKEARIF 219

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A     +A+ L PN+          Y +    +LA   +++ +++ P+   A
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.3 bits (186), Expect = 5e-15
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G    +   F+ A   Y +A+                        H N A    +    
Sbjct: 209 LGNVLKEARIFDRAVAAYLRAL---------------SLSPNHAVVHGNLACVYYEQGLI 253

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A D   +AIEL+P+   A+    NA  +      AE  +   L++ P +  +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.9 bits (185), Expect = 8e-15
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           L    + +F+  + + +      AI               ++   L   + N      + 
Sbjct: 36  LLLLSSIHFQCRRLDRSAHFSTLAI---------------KQNPLLAEAYSNLGNVYKER 80

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            Q + A +    A+ L+P+    +     A +   + E A + +   LQ +P+    
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.0 bits (180), Expect = 4e-14
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           E     ++   FE A R+  +                  ++   T   L  +    + ++
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLW---------------RQEPDNTGVLLLLSSIHFQCRR 48

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
              +      AI+  P   +A+   GN Y +  + + A + ++  L++ P+    
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 8/67 (11%), Positives = 21/67 (31%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           +  A    +    + A+  C +    EP+N        + +      + +       ++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 382 DPNNKAA 388
           +P    A
Sbjct: 63  NPLLAEA 69

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 17/118 (14%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
            KE+G + FKQ  +  A   Y + I                 +      + N AM L+KL
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLI---------------TAQPQNPVGYSNKAMALIKL 51

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ-IDPNNKAA 388
            +   A   C + +      E    R       L   + A    Q  +  +D   +  
Sbjct: 52  GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 47  SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
            +   V VH+T  L DGT  +S++  G+P  F LG   + +  ++ +  +K  +   F+ 
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEVEM 133
           +P+ A+G         P   L+     
Sbjct: 86  EPDAAFG--------VPSPDLIQYFSR 104

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 13/128 (10%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
           G   ++Q ++E A +   +A              +       +    N  +  L++K+  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEAS-------------QDTLYPERSRVFENLGLVSLQMKKPA 158

Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
            AK+  +K++ L  N         +      E   A + +    Q    N  ++    + 
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218

Query: 396 KQKLREQK 403
            +   ++ 
Sbjct: 219 AKVFEDRD 226

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           ++   +  L+    + AK    KA+E++P++  A       +    EP+LA+++++K L 
Sbjct: 40  YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99

Query: 381 IDPNN 385
            D  N
Sbjct: 100 SDSRN 104

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 17/117 (14%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           + G  Y ++   E A    +KA+               E   +    H   A+      +
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKAL---------------EIDPSSADAHAALAVVFQTEME 86

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ--IDPNNKAA 388
            K A ++  KA+  +  N +     G    +    E A +   +  Q  + P     
Sbjct: 87  PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 16/121 (13%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
           G    +  K   A   ++K++                  +   +  L  A  L K ++  
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSL---------------RLNRNQPSVALEMADLLYKEREYV 192

Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
           PA+   D   +    N ++            + + A     ++ ++ P +    Q+    
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY-QEFQAE 251

Query: 396 K 396
           K
Sbjct: 252 K 252

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           H ++    L  + +        K  +       A+ + G  YL     E A+   +K L+
Sbjct: 9   HHSSG---LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65

Query: 381 IDPNNKAA 388
           IDP++  A
Sbjct: 66  IDPSSADA 73

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
            D+ ++    +      ++ + + E A   ++    Y  ++  +                
Sbjct: 32  PDDMMDD---IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------I 73

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           +  A      +Q + A D    A  L  N+    F  G   L L  P  A++ F+ V+Q 
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 382 DPNNKAAVQ 390
             + K  ++
Sbjct: 134 SNDEKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 8/59 (13%), Positives = 17/59 (28%)

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
               +  +     +     + +    E AE  F+ +   D  N   +  L    Q   +
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.5 bits (179), Expect = 4e-15
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G TY +  K++LA     K                 E             + L  L + 
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVA---------------EANPINFNVRFRLGVALDNLGRF 126

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A D    A+ L PN  K       +Y  +   E A   F+K  ++D      
Sbjct: 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 71.7 bits (177), Expect = 7e-15
 Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           +G ++ K  ++  A    ++                 +         L+  +  +K    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVY---------------DADAFDVDVALHLGIAYVKTGAV 58

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
               +  ++++   P+N K     G  Y+ + + +LA     KV + +P N   
Sbjct: 59  DRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y K    +      ++++                             +  +++++ 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSL---------------ADAPDNVKVATVLGLTYVQVQKY 92

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A     K  E  P N    FR G A  +L   + A   F+  L + PN    
Sbjct: 93  DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 8/70 (11%), Positives = 23/70 (32%)

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
             + +  +   K  +   A    ++  + +  +       G AY+     +   +  ++ 
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 379 LQIDPNNKAA 388
           L   P+N   
Sbjct: 69  LADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 4/44 (9%), Positives = 14/44 (31%)

Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +  +   +  +  +G ++        A    ++V   D  +   
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+KQ  ++ A   Y+KA+               E          N      K    
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 59

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A +   KA+EL+PNN +A++  GNAY    + + A + +QK L++DPNN  A
Sbjct: 60  DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 58.6 bits (143), Expect = 8e-11
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
             N      K      A +   KA+EL+PNN +A++  GNAY    + + A + +QK L+
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 381 IDPNNKAA 388
           +DPNN  A
Sbjct: 72  LDPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+KQ  ++ A   Y+KA+               E          N      K    
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 93

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
             A +   KA+EL+PNN +A    GNA    
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            N+ +A++  GNAY    + + A + +QK L++DPNN  A
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+KQ  ++ A   Y+KA+               E          N      K    
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDY 85

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
             A +   KA+EL+P + +A++  GNAY    + + A + +QK L++DP +
Sbjct: 86  DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+KQ  ++ A   Y+KA+               E          N      K    
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL---------------ELDPRSAEAWYNLGNAYYKQGDY 51

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A +   KA+EL+P + +A++  GNAY    + + A + +QK L++DP +  A
Sbjct: 52  DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
             N      K      A +   KA+EL+P + +A++  GNAY    + + A + +QK L+
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 381 IDPNNKAA 388
           +DP +  A
Sbjct: 64  LDPRSAEA 71

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 15/137 (10%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                             ++ +                                   ++ 
Sbjct: 29  LADAELGMGDTTAGEMAVQRGL---------------ALHPGHPEAVARLGRVRWTQQRH 73

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
             A     +A +  P +       G+A  D  + E A   + +  Q+ P       +L  
Sbjct: 74  AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133

Query: 395 TKQKLREQKIKEKQVYA 411
            +++L + +  +     
Sbjct: 134 WRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 15/104 (14%)

Query: 285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA 344
                   + A+                 +       L  A   L +      +    + 
Sbjct: 5   GPRELLQLRAAV---------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG 49

Query: 345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + L P + +A  R G           A    Q+     P +   
Sbjct: 50  LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK 396
              Q   A+   P +  A+    +A L + +    E   Q+ L + P +  AV +L + +
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67

Query: 397 QKLREQKIKEK 407
              +       
Sbjct: 68  WTQQRHAEAAV 78

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 15/116 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G   + Q +   A    ++A                +         L     L    QA
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQAS---------------DAAPEHPGIALWLGHALEDAGQA 107

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ 390
           + A     +A +L P       +  N    L +    +    +V         AV+
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 74.1 bits (181), Expect = 3e-14
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
             +   +Q K + A  +YK+AI                   T    + N    L +++  
Sbjct: 49  LASVLQQQGKLQEALMHYKEAI---------------RISPTFADAYSNMGNTLKEMQDV 93

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           + A     +AI++ P    A     + + D      A   ++  L++ P+   A   L  
Sbjct: 94  QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153

Query: 395 TKQKLREQKIKEK 407
             Q + +    ++
Sbjct: 154 CLQIVCDWTDYDE 166

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 65.2 bits (158), Expect = 2e-11
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                 +Q   E A R Y+KA+               E      A H N A  L +  + 
Sbjct: 15  LANIKREQGNIEEAVRLYRKAL---------------EVFPEFAAAHSNLASVLQQQGKL 59

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           + A     +AI + P    A+   GN   ++ + + A + + + +QI+P    A   L  
Sbjct: 60  QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119

Query: 395 TKQKLREQK 403
                ++  
Sbjct: 120 I---HKDSG 125

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G T  +    + A + Y +AI               +        H N A         
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAI---------------QINPAFADAHSNLASIHKDSGNI 127

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A      A++L+P+   A+    +    + +    ++  +K++ I  +    
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 13/79 (16%), Positives = 29/79 (36%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
             N A    +    + A     KA+E+ P    A     +      + + A   +++ ++
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 381 IDPNNKAAVQKLTQTKQKL 399
           I P    A   +  T +++
Sbjct: 72  ISPTFADAYSNMGNTLKEM 90

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 18/113 (15%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G     +  ++ A   +                         +    N       LK  
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQD------------------PHSRICFNIGCMYTILKNM 53

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
             A+    ++I  + +   A+F+RG  Y    + +LA KD ++ L     N+ 
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 31/128 (24%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y        A + + ++I                R K L   +    M   + ++ 
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSI---------------NRDKHLAVAYFQRGMLYYQTEKY 87

Query: 335 KPAKDQCDKAIELEPNNE----------------KAFFRRGNAYLDLNEPELAEKDFQKV 378
             A     +A+     N+                +  +     Y    E + AE+     
Sbjct: 88  DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

Query: 379 LQIDPNNK 386
             +    +
Sbjct: 148 TSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
           N  +     K  K A D           + +  F  G  Y  L     AEK F + +  D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 383 PNNKAA 388
            +   A
Sbjct: 68  KHLAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC--HLNAAMCLLKLK 332
           RG  Y++ +K++LA ++ K+A+  L  +   + +    + K L AC    N A    K +
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK-LFACEVLYNIAFMYAKKE 135

Query: 333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
           + K A++Q   A  ++           ++ +D      A +   K    +P
Sbjct: 136 EWKKAEEQLALATSMKSEPR-------HSKID-----KAMECVWKQKLYEP 174

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 10/130 (7%), Positives = 23/130 (17%), Gaps = 15/130 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +          +  +       +A                           +       L
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAH---------------GLTPEQVVAIASNGGGKQAL 391

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P    A          L   +       +   + P    A+  
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451

Query: 392 LTQTKQKLRE 401
               +  L  
Sbjct: 452 NGGGRPALES 461

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 11/114 (9%), Positives = 19/114 (16%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G      +  +       +A                           +       L+  
Sbjct: 384 NGGGKQALETVQRLLPVLCQAH---------------GLTPEQVVAIASHDGGKQALETV 428

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +       +A  L P    A    G     L             L    N+   
Sbjct: 429 QRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 14/128 (10%), Positives = 27/128 (21%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +   G      +  +       +A                           + +     L
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNSGGKQAL 289

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P    A    G     L   +       +   + P    A+  
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 350 HDGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 12/125 (9%), Positives = 23/125 (18%), Gaps = 15/125 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                   +  +       +A                           +       L+  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGGGKQALETV 326

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           +       +A  L P    A          L   +       +   + P    A+     
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG 386

Query: 395 TKQKL 399
            KQ L
Sbjct: 387 GKQAL 391

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 13/128 (10%), Positives = 25/128 (19%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +          +  +       +A                           +       L
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAH---------------GLTPEQVVAIASNGGGKQAL 187

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P    A    G     L   +       +   + P    A+  
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 248 NGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 13/126 (10%), Positives = 24/126 (19%), Gaps = 15/126 (11%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
             G      +  +       +A                           +       L+ 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGGGKQALET 257

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
            +       +A  L P    A          L   +       +   + P    A+    
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 394 QTKQKL 399
             KQ L
Sbjct: 318 GGKQAL 323

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 15/133 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           EQ   +   G      +  +       +A                           +   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASNGG 216

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
               L+  +       +A  L P    A    G     L   +       +   + P   
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 276

Query: 387 AAVQKLTQTKQKL 399
            A+   +  KQ L
Sbjct: 277 VAIASNSGGKQAL 289

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 15/133 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           EQ   +          +  +       +A                           +   
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAH---------------GLTPQQVVAIASHDG 114

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
               L+  +       +A  L P    A          L   +       +   + P   
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV 174

Query: 387 AAVQKLTQTKQKL 399
            A+      KQ L
Sbjct: 175 VAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 2/74 (2%)

Query: 328 LLKLKQAKPAKDQ--CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
            +   +A  A         + L P    A          L   +       +   + P  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

Query: 386 KAAVQKLTQTKQKL 399
             A+      KQ L
Sbjct: 106 VVAIASHDGGKQAL 119

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.8 bits (159), Expect = 4e-13
 Identities = 13/113 (11%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G   +    +  +   ++KAI               +     +   L     L  L++ 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAI---------------QLDPEESKYWLMKGKALYNLERY 56

Query: 335 KPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
           + A D  +  I +  +  N+  +  + +A   +   E+  +  +   +++ ++
Sbjct: 57  EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 13/68 (19%), Positives = 26/68 (38%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           +    +          + D  +KAI+L+P   K +  +G A  +L   E A   +  V+ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 381 IDPNNKAA 388
           +  +    
Sbjct: 69  VIEDEYNK 76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             N + ++  G    D      +   F+K +Q+DP     
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 18/147 (12%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           S + LEQ   L       ++   +E A   ++                        +   
Sbjct: 17  SSDTLEQ---LYSLAFNQYQSGXYEDAHXVFQALC---------------VLDHYDSRFF 58

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           L    C   + Q   A         ++    +  F      L   E   AE       ++
Sbjct: 59  LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

Query: 382 DPNNKAAVQKLTQTKQKLREQKIKEKQ 408
             N     +  T+    L   K+K++ 
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 8/59 (13%), Positives = 18/59 (30%)

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
              E+  +  +  +            E A   FQ +  +D  +      L   +Q + +
Sbjct: 12  MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 21/108 (19%)

Query: 49  GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
           G K+KV Y G L  G VFD+S                 EP EF +G+GQ+I+ ++  +  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 96  MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
           M+  +        E AYG          +  L+ ++   +++  D  P
Sbjct: 65  MEVGDEKTVKIPAEKAYG--------NRNEMLIQKIPRDAFKEADFEP 104

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 47  SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
           +    V + Y     DG + D S     P ++  G G +I   +  +   +  +      
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEV 131
               AYG          D  LV  V
Sbjct: 63  GANDAYG--------QYDENLVQRV 79

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
               AM  ++ +  + A    + A++ +P NE A+  R   Y  L   + A++ F++ L 
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 381 IDPNNKAA 388
           I P++   
Sbjct: 71  IKPDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 22/156 (14%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---P-----------YLDFDGGFEGEQETERKKTLTAC 320
           R   Y      + A  ++++A+   P           +L        E      K L   
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP 107

Query: 321 --------HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE 372
                   +LN  +C  K  Q   A+    +++  +P    AF       +   +   A+
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167

Query: 373 KDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408
             F+K        +A    L     K         +
Sbjct: 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 16/116 (13%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           +    Y +   +  A  + + A+               +         L  A     LK 
Sbjct: 13  QLAMEYMRGQDYRQATASIEDAL---------------KSDPKNELAWLVRAEIYQYLKV 57

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLD-LNEPELAEKDFQKVLQIDPNNKAA 388
              A++   +A+ ++P++ +     G      LN P  +   F K L         
Sbjct: 58  NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 17/110 (15%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           +G    KQ +F LA    K+++                 +          A   +   Q 
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSL---------------AAQPQFPPAFKELARTKMLAGQL 163

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
             A     K        +         +        A+  ++   Q+  N
Sbjct: 164 GDADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQAN 211

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 11/114 (9%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
              ++  +     A  + +  +   P   ++       + +          +        
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQ-SEDFFFAAP 151

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
            + +  +     A+E+ PN+ +     G  Y   N  + A  + ++ +++ P++
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 12/128 (9%), Positives = 32/128 (25%), Gaps = 15/128 (11%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           E G +  K      A   ++                  +          +  +   + ++
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVC---------------QAAPEREEAWRSLGLTQAENEK 70

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
              A    + A  L+P +         ++ + +    A    +  L   P  +       
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 394 QTKQKLRE 401
           Q    + +
Sbjct: 131 QADVDIDD 138

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
               +   +++         A+               E        H +  +        
Sbjct: 144 EDFFFAAPNEYRECRTLLHAAL---------------EMNPNDAQLHASLGVLYNLSNNY 188

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             A     +A+EL P++ + + + G    + N P+ A   + + L I+P     
Sbjct: 189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y   + ++ A  N ++A+               E +             L    + 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAV---------------ELRPDDAQLWNKLGATLANGNRP 222

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           + A D  ++A+++ P   +  +    +Y ++++ +LA K   + + +       
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 13/68 (19%), Positives = 24/68 (35%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
            +   + +LKL     A    +   +  P  E+A+   G    +  +  LA         
Sbjct: 24  PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83

Query: 381 IDPNNKAA 388
           +DP + A 
Sbjct: 84  LDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 18/126 (14%), Positives = 29/126 (23%), Gaps = 30/126 (23%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G T  + +K  LA      A                       A H   A+       A
Sbjct: 61  LGLTQAENEKDGLAIIALNHAR---------------MLDPKDIAVHAALAVSHTNEHNA 105

Query: 335 KPAKDQCDKAIELEPNNEKA---------------FFRRGNAYLDLNEPELAEKDFQKVL 379
             A       +  +P  E+                       +   NE           L
Sbjct: 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165

Query: 380 QIDPNN 385
           +++PN+
Sbjct: 166 EMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 27/119 (22%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G T    ++ + A   Y +A+               +          N A+    + Q 
Sbjct: 212 LGATLANGNRPQEALDAYNRAL---------------DINPGYVRVMYNMAVSYSNMSQY 256

Query: 335 KPAKDQCDKAIELEPNNEKAFFRR------------GNAYLDLNEPELAEKDFQKVLQI 381
             A  Q  +AI ++                            +N P+L E  + + ++ 
Sbjct: 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 339 DQCDKAIELEPNN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            Q +     E NN     +     G + L L     A   F+ V Q  P  + A
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 47  SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
           +    V + Y     DG + D S     P ++  G G +I   +  +   +  +      
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEVE 132
               AYG          D  LV  V 
Sbjct: 63  GANDAYG--------QYDENLVQRVP 80

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 22/113 (19%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           RG  Y    + + A  + K+A+      +                        A   L +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPE-------------------IRSALAELYLSM 164

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
            +   A  Q  KA+E  P +     R  +A L   + E A +          +
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 275 RGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
              T  K      A  N K  +   P   + GG+         +   A +  A       
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV-----LSEAYVALYRQAEDRERGK 97

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
              + A      A  + P       +RG  Y  L E + AE   ++ L ++   + 
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 26/125 (20%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G   +   +++ A   +++A+               +            A   LKL   
Sbjct: 11  LGVQLYALGRYDAALTLFERAL---------------KENPQDPEALYWLARTQLKLGLV 55

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP-----------ELAEKDFQKVLQIDP 383
            PA +     +   P     +     AY+ L              E A    +   +++P
Sbjct: 56  NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115

Query: 384 NNKAA 388
                
Sbjct: 116 RYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)

Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLL 329
            L ++       +   E A    K A                         HL   +   
Sbjct: 85  ALYRQAEDRERGKGYLEQALSVLKDAE---------------RVNPRYAPLHLQRGLVYA 129

Query: 330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            L +   A+    +A+ LE   E         YL +   + A   + K L+  P +   
Sbjct: 130 LLGERDKAEASLKQALALEDTPE-IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 11/68 (16%), Positives = 25/68 (36%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
            L   + L  L +   A    ++A++  P + +A +      L L     A ++ + ++ 
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 381 IDPNNKAA 388
             P     
Sbjct: 68  RTPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
              E+   R G     L   + A   F++ L+ +P +  A
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 27/185 (14%)

Query: 211 KYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGK 270
            +   S L  +  H+ S  G  ++G  S          +  E+ K   Q      +++  
Sbjct: 7   HHHHSSGLVPRGSHMASMTGGQQMGRGSM-------MADEEEEAKHVLQ-KLQGLVDRLY 58

Query: 271 LLKERGTTYFKQDKFELACRN-------YKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
             ++   +YF+    E A R         +K +  ++        +     +      + 
Sbjct: 59  CFRD---SYFETHSVEDAGRKQQDVQEEMEKTLQQME--------EVLGSAQVEAQALML 107

Query: 324 AAMCLLKL-KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
               L      +  A+    KA++LEP   +A+ + G  Y    +   A   F   L   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 383 PNNKA 387
            N  +
Sbjct: 168 KNKVS 172

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.5 bits (154), Expect = 5e-11
 Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 15/176 (8%)

Query: 269 GKLLKE--RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
             +L++    +          + R  K A+  +D     +G           + + N   
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDVL---DGRSWYILGNAYLSLYFNTGQ 232

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
                +QA  A  Q +K      +N      R   +        A + F +   +DP   
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 387 AAVQKLTQTKQKLRE--------QKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPD 434
              Q+  Q  + L           K K K+   +M             + + +   
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKK-LQSMLGSLRPAHLGPCGDGRYQSAS 347

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 15/137 (10%)

Query: 259 QLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT 318
           Q   +  L       E G    ++     A   ++ A+               ++     
Sbjct: 54  QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV---------------QQDPKHM 98

Query: 319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
                      + +Q   A     + +EL+P+N+ A      ++ + +    A +  +  
Sbjct: 99  EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158

Query: 379 LQIDPNNKAAVQKLTQT 395
           L+  P     V    + 
Sbjct: 159 LRYTPAYAHLVTPAEEG 175

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 251 FEKIKDTWQLNSDEKLEQGKLLKERGTTY-----FKQDKFELACRNYKKAIPYLDFDGGF 305
           FE+ K   + + D   +    L+E          +  D  +L    Y K   +       
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF------- 55

Query: 306 EGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
               E E             +  L+      A    + A++ +P + +A+   G    + 
Sbjct: 56  ----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111

Query: 366 NEPELAEKDFQKVLQIDPNNKAA 388
            +  LA    ++ L++ P+N+ A
Sbjct: 112 EQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 15/125 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  +    +++ A   +  A+                 +             L    Q+
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAAL---------------SVRPNDYLLWNKLGATLANGNQS 267

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           + A     +A+EL+P   ++ +  G + ++L     A + F + L +   ++    +   
Sbjct: 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327

Query: 395 TKQKL 399
             + +
Sbjct: 328 MSENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 22/124 (17%)

Query: 269 GKLLKERGTTYFKQDKFELACRNYKKAI---P-YLDFDGGFEGEQETERKKTLTACHLNA 324
           G   +  G+       F      +  A+   P  +D D                      
Sbjct: 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPD-----------------VQCGL 223

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
            +      +   A D    A+ + PN+   + + G    + N+ E A   +++ L++ P 
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 385 NKAA 388
              +
Sbjct: 284 YIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 58/229 (25%)

Query: 195 SEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI 254
           S+ D  + L+  LE+   ++         H W    +D      +K   Y     N  + 
Sbjct: 12  SDVDFWDKLQAELEEMAKRDAE------AHPWLSDYDDLTSATYDK--GYQFEEENPLRD 63

Query: 255 KDTWQLNSDEKLEQGKL--------------------LKERGTTYFKQDKFELACRNYKK 294
                     +L++G L                     +  GTT  + ++  LA    ++
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 295 AIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA 354
            +               E K       +  A+        + A +     +   P     
Sbjct: 124 CL---------------ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168

Query: 355 F---------------FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
                            R   + L  +     ++ F   +++DP +   
Sbjct: 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 26/121 (21%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G T    ++ E A   Y++A+               E +        N  +  + L   
Sbjct: 257 LGATLANGNQSEEAVAAYRRAL---------------ELQPGYIRSRYNLGISCINLGAH 301

Query: 335 KPAKDQCDKAIELEPNNEKAFFRR-----------GNAYLDLNEPELAEKDFQKVLQIDP 383
           + A +   +A+ ++  +                    A   L + +       + L    
Sbjct: 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361

Query: 384 N 384
            
Sbjct: 362 T 362

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 52  VKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYA 111
             + Y       ++   S    EP EF +G  Q+I   ++ +   +  E       PE A
Sbjct: 13  ALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEA 72

Query: 112 YGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
           YG          +S+ + EV    +E  ++  
Sbjct: 73  YG--------VYESSYLQEVPRDQFEGIELEK 96

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +          +  +       +A                           +       L
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAH---------------GLPPDQVVAIASNIGGKQAL 273

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P+   A    G     L   +       +   + P+   A+  
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 334 HDGGKQAL 341

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 15/135 (11%), Positives = 29/135 (21%), Gaps = 15/135 (11%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
             +Q   +   G      +  +       +A        G   +Q             + 
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTPDQVV--------AIASN 571

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
                 L+  +       +A  L      A          L   +       +   + P 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 385 NKAAVQKLTQTKQKL 399
              A+      KQ L
Sbjct: 632 QVVAIASHDGGKQAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 18/166 (10%), Positives = 37/166 (22%), Gaps = 25/166 (15%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +   G      +  +       +A                           +       L
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASHDGGKQAL 341

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN------N 385
           +  +       +A  L P+   A    G     L   +       +   + P+      +
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 386 KAAVQKLTQTKQKL----REQKIKEKQVYANMFDKFAKHDTEKEEE 427
               Q L   ++ L    +   +   QV A       K   E  + 
Sbjct: 402 NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 447

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 13/135 (9%), Positives = 26/135 (19%), Gaps = 15/135 (11%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
              Q   +          +  +       +A                           + 
Sbjct: 595 TQVQVVAIASNIGGKQALETVQRLLPVLCQAH---------------GLTPAQVVAIASH 639

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
                 L+  +       +A  L P+   A    G     L   +       +   +   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 385 NKAAVQKLTQTKQKL 399
              A+      KQ L
Sbjct: 700 QVVAIASNNGGKQAL 714

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 13/133 (9%), Positives = 28/133 (21%), Gaps = 15/133 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           +Q   +          +  +       +A                           +   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASHGG 302

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
               L+  +       +A  L P+   A          L   +       +   + P+  
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362

Query: 387 AAVQKLTQTKQKL 399
            A+      KQ L
Sbjct: 363 VAIASNGGGKQAL 375

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 14/128 (10%), Positives = 28/128 (21%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +   G      +  +       +A                   +       +       L
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAH---------------GLTQEQVVAIASNNGGKQAL 714

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P+   A    G     L   +       +   + P    A+  
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 775 NIGGKQAL 782

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 5e-10
 Identities = 12/133 (9%), Positives = 25/133 (18%), Gaps = 15/133 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
            Q   +          +  +       +A                           +   
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASNGG 675

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
               L+  +       +A  L      A          L   +       +   + P+  
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735

Query: 387 AAVQKLTQTKQKL 399
            A+      KQ L
Sbjct: 736 VAIASNGGGKQAL 748

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 6e-10
 Identities = 13/128 (10%), Positives = 26/128 (20%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +          +  +       +A                           +       L
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAH---------------GLTPDQVVAIASNIGGKQAL 510

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
              +       +A  L P+   A    G     L   +       +   + P+   A+  
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 571 NGGGKQAL 578

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 13/135 (9%), Positives = 26/135 (19%), Gaps = 15/135 (11%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
             +Q   +             +       +A                           + 
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAH---------------GLTPDQVVAIASN 537

Query: 325 AMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
                 L+  +       +A  L P+   A    G     L   +       +   +   
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 385 NKAAVQKLTQTKQKL 399
              A+      KQ L
Sbjct: 598 QVVAIASNIGGKQAL 612

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 11/79 (13%), Positives = 20/79 (25%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
             +       L+  +       +A  L P    A          L   +       +   
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 381 IDPNNKAAVQKLTQTKQKL 399
           + P+   A+      KQ L
Sbjct: 255 LPPDQVVAIASNIGGKQAL 273

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 17/153 (11%), Positives = 34/153 (22%), Gaps = 18/153 (11%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAI----PYLDFDGGFEGEQETERKKTLTAC 320
             +Q   +   G      +  +       +A       +       G+Q  E  + L   
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPV 417

Query: 321 --------------HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN 366
                           +       L+  +       +   L P    A          L 
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477

Query: 367 EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
             +       +   + P+   A+      KQ L
Sbjct: 478 TVQQLLPVLCQAHGLTPDQVVAIASNIGGKQAL 510

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 9/58 (15%), Positives = 14/58 (24%)

Query: 342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
              + L P    A          L   +       +   + P    A+      KQ L
Sbjct: 182 GAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 239

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 11/128 (8%), Positives = 23/128 (17%), Gaps = 15/128 (11%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           +          +  +       +A                           +       L
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAH---------------GLTPDQVVAIASNGGGKQAL 748

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +  +       +A  L P    A          L   +       +   +      A+  
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808

Query: 392 LTQTKQKL 399
               KQ L
Sbjct: 809 NIGGKQAL 816

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 11/123 (8%), Positives = 28/123 (22%), Gaps = 8/123 (6%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
            +          + A    ++ +P L    G   +Q             +       L+ 
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQ--------VVAIASNIGGKQALET 852

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
            +       +   L P+   A          L   +       +   +  +   A+    
Sbjct: 853 VQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912

Query: 394 QTK 396
             +
Sbjct: 913 GKQ 915

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           E G    K+    +     + AI                +            +   + + 
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAI---------------LQDPGDAEAWQFLGITQAENEN 114

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT 393
            + A     + +EL+PNN KA      +Y + +  + A +  +  ++ +P  K  V+   
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 394 QTKQKLRE 401
            +    R 
Sbjct: 175 GSPGLTRR 182

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI--PYLDFDGGFEGEQ 309
            +  D  Q   +E   +  +          Q     + + Y      P+ D+ G      
Sbjct: 16  TEFWDKMQAEWEEMARRNWI--SENQEAQNQVTVSASEKGYYFHTENPFKDWPG------ 67

Query: 310 ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPE 369
                           +  LK           + AI  +P + +A+   G    +    +
Sbjct: 68  -----------AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116

Query: 370 LAEKDFQKVLQIDPNNKAA 388
            A    Q+ L++ PNN  A
Sbjct: 117 AAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 15/149 (10%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  +    +F  A   +  A+                 +    +        L    ++
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAAL---------------TVRPEDYSLWNRLGATLANGDRS 263

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           + A +   +A+E++P   ++ +  G + ++L     A  +F   L +   ++   Q    
Sbjct: 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323

Query: 395 TKQKLREQKIKEKQVYANMFDKFAKHDTE 423
                    ++      +  + F   +  
Sbjct: 324 AISGNIWAALRIALSLMDQPELFQAANLG 352

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)

Query: 275 RGTTYFKQDKFELACRNYKKAI-------------PYLDFDGGFEGEQETERKKTLTA-- 319
              +Y      + AC   K  I                        +   +         
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 320 ----------------CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYL 363
                                 +      +   A D  + A+ + P +   + R G    
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258

Query: 364 DLNEPELAEKDFQKVLQIDPNNKAA 388
           + +  E A + + + L+I P    +
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 16/118 (13%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G T  + +  + A    ++ +               E +       +  A+        
Sbjct: 105 LGITQAENENEQAAIVALQRCL---------------ELQPNNLKALMALAVSYTNTSHQ 149

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-NKAAVQK 391
           + A +     I+  P  +     +  +         +  D   +  +     +AA Q 
Sbjct: 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 15/111 (13%)

Query: 282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC 341
             +FE A    +      +F    + E E               +   +  Q +      
Sbjct: 2   AMEFERAKAAVESDT---EFWDKMQAEWEEM--------ARRNWISENQEAQNQVTVSAS 50

Query: 342 DKAIELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +K       N        F  G   L   +  +     +  +  DP +  A
Sbjct: 51  EKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
                    + +Q   A      A++ +P    A+   G       +   A + ++  L 
Sbjct: 22  RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81

Query: 381 IDPNN--KAAVQKLTQTKQKLREQ 402
              +   +  V++L    ++L  +
Sbjct: 82  AAQSRGDQQVVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 12/65 (18%), Positives = 24/65 (36%)

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
           +   ++ +  +    +N    F  G  Y +  + + A    +  L  DP    A + L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 395 TKQKL 399
           T Q  
Sbjct: 62  TLQGQ 66

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 15/77 (19%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G TY + ++F+ A  + + A+               +   T +         L      
Sbjct: 25  LGKTYAEHEQFDAALPHLRAAL---------------DFDPTYSVAWKWLGKTLQGQGDR 69

Query: 335 KPAKDQCDKAIELEPNN 351
             A+   +  +    + 
Sbjct: 70  AGARQAWESGLAAAQSR 86

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
           G  Y  Q+ +  +   Y++A+            Q       L A                
Sbjct: 51  GEYYLWQNDYSNSLLAYRQAL------------QLRGENAELYAALATVLYYQASQHMTA 98

Query: 336 PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKL 392
             +   DKA+ L+ N   A     +          A + +QKV+ ++         V+ +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158

Query: 393 TQTKQKLREQKIKEKQVY 410
              K   R   ++    +
Sbjct: 159 NMAKLLQRRSDLEHHHHH 176

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
             I   P N + +   G  YL  N+   +   +++ LQ+   N   
Sbjct: 35  DKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVL 379
            L     L+     + A    ++ ++ EP   ++A++  GNAY  L + + A  ++Q  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 380 QIDPNNKAA 388
           +++P++ A 
Sbjct: 63  ELNPDSPAL 71

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 49  GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
           G  VK+ Y G + DG +FD++                  P     G+GQV+   D  I  
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 96  MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
           M   E       PE A+G          D + +  + +  +    I P
Sbjct: 64  MDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEFTKRGIKP 103

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
             N      K      A +   KA+EL+PNN +A++  GNAY    + + A + +QK L+
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 381 IDPNNKAA 388
           +DPNN  A
Sbjct: 72  LDPNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
            G  Y+KQ  ++ A   Y+KA+               E          N      K    
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDY 59

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDL 365
             A +   KA+EL+PNN +A    GNA    
Sbjct: 60  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.5 bits (96), Expect = 8e-05
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
            N+ +A++  GNAY    + + A + +QK L++DPNN  A
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
               A   LK   A  A    ++ +E +P+    ++  G  Y  L+  + A   + + ++
Sbjct: 10  RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69

Query: 381 IDPN--NKAAVQKLTQTKQKL 399
           +      +  + +L   K K 
Sbjct: 70  VAREEGTQKDLSELQDAKLKA 90

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +P +    +     +L  +    A   F+++++ DP+    
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT 43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 17/92 (18%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
              + K D    A   +++ +               E        + +      +L +  
Sbjct: 14  AQEHLKHDNASRALALFEELV---------------ETDPDYVGTYYHLGKLYERLDRTD 58

Query: 336 PAKDQCDKAIELEPN--NEKAFFRRGNAYLDL 365
            A D   + IE+      +K      +A L  
Sbjct: 59  DAIDTYAQGIEVAREEGTQKDLSELQDAKLKA 90

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 47  SAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC 106
                V + YT  + +G V D          +  G   +I   +  +   ++ E      
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 107 KPEYAYGKQGSPPTIPPDSTLVFEV 131
             E AYG        P D   V  V
Sbjct: 58  PAEKAYG--------PHDPEGVQVV 74

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
            +   + +LKL     A    +   + EP  E+A+   G    +  +  LA         
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 381 IDPNNKAA 388
           +DP + A 
Sbjct: 80  LDPKDIAV 87

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 15/111 (13%)

Query: 274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ 333
           E G +  K      A   ++                  +++        +  +   + ++
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVC---------------QKEPEREEAWRSLGLTQAENEK 66

Query: 334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN 384
              A    + A  L+P +         ++ + +    A    +  L   P 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNA 324
           ++    L            +++ A  N ++A+   +       E+  +       CH   
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAM---EISHTMPPEEAFDHAGFDAFCHAGL 63

Query: 325 AMCLLKLKQAKPAKDQCDKAI-------ELEPNNEKAF----FRRGNAYLDLNEPELAEK 373
           A  L  L+    A    DKA+       EL  +  K +    + R  A   L     A  
Sbjct: 64  AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123

Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405
           +F+KV+++    K       +  +   ++  +
Sbjct: 124 EFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 37/215 (17%)

Query: 202 NLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK----IKDT 257
             E ALE  +  E+                  L    N    Y   M         +   
Sbjct: 66  QNEAALECLRKAEELIQQEHADQA----EIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKV 120

Query: 258 WQLN----SDEKLEQGKLLKERGTTYFK--QDKFELACRNYKKAIPYLDFDGGFEGEQET 311
             +     S  ++E  +L  E G T  K   ++ E A   ++KA+               
Sbjct: 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--------------- 165

Query: 312 ERKKTLTACHLN---AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL--- 365
           E+K            A+  L     ++ A D   +AI L P+N+            +   
Sbjct: 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE 225

Query: 366 -NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
             E    EK  ++ L+  P     ++   +  ++ 
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 19/188 (10%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAI---PYLDFDGGFEGEQETERKKTLTACHLNAAMCL 328
           L+     Y ++D+ + A    KKA+   P   +     G     +   +     N     
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 329 LKLKQAKP-AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
            KL +    A     KA E   N  +      + +   ++ E AE  FQK    +    A
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 388 AVQ------KLTQTKQKLREQ---------KIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
                         + K  ++         KI +K           +   +    +   +
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD 429

Query: 433 PDVMKTLG 440
            + +  L 
Sbjct: 430 SEALHVLA 437

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP--AKDQCDKAIELE 348
                  Y+D       +  +  +              LK    +   AK   +KA+E +
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 349 PNNEKAFFRRGNAYL---DLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK 405
           P N +       A     +    + A    ++ ++++P+N+     L     K+RE+  +
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228

Query: 406 EKQ 408
           E +
Sbjct: 229 EGE 231

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 21/130 (16%)

Query: 276 GTTYFKQDKFELACRNYKKAI---------PYLDFDGGFEGEQETERKKTLTACHLNAAM 326
            + +   D++E A   ++K             L    G     + + +       +    
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG-- 398

Query: 327 CLLKLKQAKPAKDQC--------DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV 378
             +K+ Q    K++            +     + +A            + + A++D ++ 
Sbjct: 399 --VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

Query: 379 LQIDPNNKAA 388
           L+      +A
Sbjct: 457 LESGSLIPSA 466

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 16/142 (11%)

Query: 276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK 335
                 + + E A    +KA   +      + E   + +        N A     + +  
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELI------QQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111

Query: 336 PAKDQCDKAIELEPNNEKAF--------FRRGNAYLDL--NEPELAEKDFQKVLQIDPNN 385
             +   DK   +       +           G   L    N+ E A+  F+K L+  P N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 386 KAAVQKLTQTKQKLREQKIKEK 407
                 L     +L      + 
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQN 193

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 49  GCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIAT 95
           G  VK+ Y G + DG +FD++                  P     G+GQV+   D  I  
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 96  MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISP 143
           M   E       PE A+G          D + +  + +  +    I P
Sbjct: 64  MDVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEFTKRGIKP 103

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 17/160 (10%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
                 K D+ +LA +  KK     +                 T   L  A   L     
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDA---------------TLTQLATAWVSLAAGGE 180

Query: 335 KP--AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
           K   A     +  +           +   ++     E AE   Q+ L  D  +   +  L
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240

Query: 393 TQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKE 432
               Q L +      +  + + D    H   KE   K+ +
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP-----------YLD 300
            + +     + +  +E+   L      Y  Q K+ +     K +             YL 
Sbjct: 20  NEAQRVKPSSPERDVERDVFL---YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLA 76

Query: 301 FDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEKAFFRR 358
                +       ++   +  +     LL            D A+    + ++ +     
Sbjct: 77  SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMT 136

Query: 359 GNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE-KQVYANMFDKF 417
               L L+  +LA K+ +K+   D +                 +K+++   ++  M DK 
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196

Query: 418 AKH 420
           +  
Sbjct: 197 SPT 199

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 284 KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK 343
               A   Y+KAI       G +G+        L  C+L        L + + A+     
Sbjct: 5   LEAQAVPYYEKAI-----ASGLQGKD-------LAECYLGLGSTFRTLGEYRKAEAVLAN 52

Query: 344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
            ++  PN++           +L   E   +   K++    +++ 
Sbjct: 53  GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 342 DKAIEL---EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +KAI       +  + +   G+ +  L E   AE      ++  PN++A 
Sbjct: 14  EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 244 YTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG 303
           Y   +  + + +      SD+ +E+ +   +    Y+   +  ++  +  +A+       
Sbjct: 117 YVEAIGYYREAEKELPFVSDD-IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY---- 171

Query: 304 GFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--EPNNEK----AFFR 357
               +                A      K    A    + A+EL  +  N++    +   
Sbjct: 172 ----QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227

Query: 358 RGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
             N+Y    + ++A + FQK  ++     
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKV 256

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 19/186 (10%), Positives = 54/186 (29%), Gaps = 22/186 (11%)

Query: 201 ENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQL 260
               +A ++  +            +   + + K+           ++M +  +  D +Q 
Sbjct: 122 GYYREAEKELPF--------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173

Query: 261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTAC 320
           +    +   + L      Y     ++ A  + + A+             + +  + +   
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------MDIQNDRFIAIS 224

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----KAFFRRGNAYLDLNEPELAEKDF 375
            LN A    +    + A +   KA ++          K  F          + + A +  
Sbjct: 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284

Query: 376 QKVLQI 381
           ++ L  
Sbjct: 285 EEGLDH 290

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           L  RG   F Q ++  A   Y++A   L F      + E          H   A     +
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF---------HFKVAEAYYHM 154

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRR-------GNAYLDLNEPELAEKDFQKVLQI 381
           KQ   +     +A+++  N+     R           Y D    + A    +  L++
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ 380
           +   A+  L   +   +    +  I+LE +    +   G  Y        A   +     
Sbjct: 280 YQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFN 338

Query: 381 IDPNNKAA 388
           + P     
Sbjct: 339 LRPGANTL 346

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 34/260 (13%), Positives = 81/260 (31%), Gaps = 27/260 (10%)

Query: 183 QEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPA 242
               + F    G           A++ FK  E   +FV    +   +   K+        
Sbjct: 99  GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMK 157

Query: 243 TYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFD 302
               +M+   +  + ++ +    +   +      T +    ++E A  +++KA       
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA--- 214

Query: 303 GGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFF 356
                 +  ++ + +     N  +C     Q + A     +AI +       P+  +A+F
Sbjct: 215 ------EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268

Query: 357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE-KQVYANMFD 415
                +  L + + A +   K +              +    +   + +  K +Y +  D
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAY----------SQKAGDVIYLSEFEFLKSLYLSGPD 318

Query: 416 KFAKHDTEKEEEEKKKEPDV 435
           + A        E K    D+
Sbjct: 319 EEAIQGFFDFLESKMLYADL 338

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 17/170 (10%), Positives = 44/170 (25%), Gaps = 34/170 (20%)

Query: 279 YFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK 338
             +      A   Y++A             +  ER +        A+  L++ ++   A 
Sbjct: 125 LMEPLDLSKAVHLYQQAA---------AVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175

Query: 339 DQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
               K   +       P   K    +    L   +   A+K  ++   I           
Sbjct: 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP---------- 225

Query: 393 TQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEW 442
                       ++     ++   + + D E+     +    ++  +   
Sbjct: 226 -------GFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS--PLVTYMDND 266

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%)

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ----------CDKAIELEPNNEKAFFR 357
           E   +               LL+L Q     D            ++A+ ++P  ++A + 
Sbjct: 26  ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85

Query: 358 RGNAYLDLNEP-----------ELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
            GNAY                 +LA + FQ+ +   P+N   ++ L  T +
Sbjct: 86  IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
            +  L+      +     +  +  N  A+  R     +    +   +   ++L+ D  N
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN 385
               IE +P N + +  R      L +P    +    +L  D  N
Sbjct: 155 ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           L     LL+  +   A +      +   +       + +  L+  + ELA++    +   
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 382 DPNNKA----AVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
             +N      A  +L Q   +  E K  E+++ AN  +     +
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 60/492 (12%), Positives = 119/492 (24%), Gaps = 172/492 (34%)

Query: 123 PDSTL-VFEVEMISWEAEDI--SPTHDGGIRR---EILEEGAS----FSTPKDGANVEI- 171
            D    +   E    E + I  S     G  R    +L +       F       N +  
Sbjct: 39  QDMPKSILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 172 --TLKGECEGKVFQEGTFSF---VLGEGSE----YDIP-----ENLEKALEKFKYKE--- 214
              +K E          +      L   ++    Y++        L +AL + +  +   
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 215 --------KSRLF--------VQPQH----LWSGKGNDKLGVPSNKPATYTITMNNF-EK 253
                   K+ +         VQ +      W    N       N P T    +     +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQ 208

Query: 254 IKDTWQLNSD------EKLEQGKLLKERGTTYFKQ-------------------DKFELA 288
           I   W   SD       ++     ++       K                    + F L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 289 CR----------------NYKKAIPYLDFDGGFEGEQETE---------RKKTL--TACH 321
           C+                     I             E +         R + L      
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 322 LN---AAMCLLKLKQ--------AKPAKDQCDKAIE-----LEPNNEKAFFR-----RGN 360
            N    ++    ++              D+    IE     LEP   +  F        +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 361 A------------YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQ 408
           A             +  ++  +      K   ++   K +   +     +L+ +   E  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 409 VYANMFDKFAKHDTEKEEEEKKKEPDV---------MKTLGEWGAEERGRESTNFEKENP 459
           ++ ++ D +    T   ++      D          +K +      E     T F     
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI------EHPERMTLF----R 494

Query: 460 NIFMLDGTGDFK 471
            +F+     DF+
Sbjct: 495 MVFL-----DFR 501

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEK---AFFRRGNAYLDLNEPELAEKDFQKVLQIDP 383
                +  + A+ Q    +   P ++K      + G +     +   A++  Q+V    P
Sbjct: 48  SYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107

Query: 384 NNKAAVQKLTQTKQKLREQKIKEK 407
            + AA       +++L+  ++ ++
Sbjct: 108 GSDAARVA----QERLQSIRLGQQ 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.96
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.96
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.95
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.95
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.94
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.93
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.93
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.92
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.92
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.92
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.92
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.92
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.91
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.91
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.91
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.91
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.91
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.91
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.91
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.9
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.89
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.88
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.84
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.82
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.78
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.73
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.69
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.67
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.67
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.66
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.66
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.65
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.63
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.62
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.61
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.6
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.6
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.6
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.6
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.59
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.59
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.58
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.58
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.58
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.58
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.58
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.57
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.57
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.55
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.53
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.5
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.5
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.49
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.48
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.44
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.33
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.33
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.31
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.29
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.25
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.25
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.01
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.01
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.01
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.0
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.0
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.98
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.98
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.97
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.96
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.9
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	98.9
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.85
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	98.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.83
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.83
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.82
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	98.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.82
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.81
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	98.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.79
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.79
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	98.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.73
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	98.72
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	98.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.69
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.64
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.58
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.51
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.47
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.41
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.31
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.29
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.2
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.18
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.15
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.13
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.1
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.04
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.03
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.89
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	97.87
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.81
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.7
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.55
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.52
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.51
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.28
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.08
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.84
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.42
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.15
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.89
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	92.59
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	91.85
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	91.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.75
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.69
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.01
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.16
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.11
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.88
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	86.3
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.22
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.55
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	83.83
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.0
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.23
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	80.62

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=1.4e-67  Score=539.55  Aligned_cols=408  Identities=43%  Similarity=0.779  Sum_probs=344.9

Q ss_pred             hhhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhc
Q psy4385          15 RIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIA   94 (473)
Q Consensus        15 ~~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~   94 (473)
                      .+.+.+|+|+++++++||.|+|+++|+|...|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.
T Consensus        16 ~~~~~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~   95 (457)
T 1kt0_A           16 ATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA   95 (457)
T ss_dssp             -----------------CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHT
T ss_pred             cccCCCcccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHh
Confidence            34556789999999999999999999998569999999999999999999999998888899999999999999999999


Q ss_pred             cCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEE
Q psy4385          95 TMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLK  174 (473)
Q Consensus        95 ~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~  174 (473)
                      +|++||+++|+|||+++||..|.++.|||+++++|+|+|++|...+++  .|++++++++++|.|+.+|..|++|+|||+
T Consensus        96 ~m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~~~~--~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~  173 (457)
T 1kt0_A           96 TMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLF--EDGGIIRRTKRKGEGYSNPNEGATVEIHLE  173 (457)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEETT--SSSSEEEEEEECCBCSCCCCTTCEEEEEEE
T ss_pred             hCCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeeccccc--CCcceEEEEEecCCCCCCCCCCCEEEEEEE
Confidence            999999999999999999999999999999999999999999887776  788999999999999999999999999999


Q ss_pred             eeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccccc
Q psy4385         175 GECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       175 g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~  254 (473)
                      |+++|++|+++++.|.+|+|....++++|+.|+..|++||++.+.++|.++|+..|.....+|+++.+.|.+.+.+++++
T Consensus       174 g~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A  253 (457)
T 1kt0_A          174 GRCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKA  253 (457)
T ss_dssp             EEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             EEeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccC
Confidence            99999999999999999999777799999999999999999999999999999999887789999999999999999999


Q ss_pred             ccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh
Q psy4385         255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA  334 (473)
Q Consensus       255 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  334 (473)
                      +..|.+.....+..+..++++|+.+++.|+|.+|+..|++|+.+.+.....+++...++.+....+|+|+|.||+++++|
T Consensus       254 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  333 (457)
T 1kt0_A          254 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY  333 (457)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999999999999999999999999888766677777888999999999999999999999


Q ss_pred             hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       335 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      ++|+.+|++||+++|+++++||++|.+|..+|+|++|+.+|++|++++|++..++..++.++..+++..+++++.|++||
T Consensus       334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCchH
Q psy4385         415 DKFAKHDTEK  424 (473)
Q Consensus       415 ~~~~~~~~~~  424 (473)
                      .++...+.+.
T Consensus       414 ~k~~~~d~~~  423 (457)
T 1kt0_A          414 KKFAEQDAKE  423 (457)
T ss_dssp             ----------
T ss_pred             hhhhhccccc
Confidence            9988876653

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=4.7e-45  Score=344.31  Aligned_cols=245  Identities=46%  Similarity=0.821  Sum_probs=224.7

Q ss_pred             hhhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhc
Q psy4385          15 RIRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIA   94 (473)
Q Consensus        15 ~~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~   94 (473)
                      .+..++++|+++..++||+|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.
T Consensus        36 ~~~~~~~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~  115 (280)
T 1q1c_A           36 APLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIA  115 (280)
T ss_dssp             -----CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHT
T ss_pred             cccCccccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHh
Confidence            44566789999889999999999999998569999999999999999999999998777899999999999999999999


Q ss_pred             cCCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEE
Q psy4385          95 TMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLK  174 (473)
Q Consensus        95 ~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~  174 (473)
                      +|++|++++|+|||++|||..|.++.|||+++++|+|+|++|...++.+..|+++.++++++|.|...|..|+.|+|||.
T Consensus       116 gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~  195 (280)
T 1q1c_A          116 TMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALE  195 (280)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEE
T ss_pred             cCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecccccccccccceeEEeeecccccccccCCceEEEEEE
Confidence            99999999999999999999999999999999999999999998888877899999999999999889999999999999


Q ss_pred             eeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccccc
Q psy4385         175 GECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       175 g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~  254 (473)
                      |+++|++|+++++.|.+|.+....+++||+.+|..|+.||++.+.+||.++||..+.+...||+++.+.|++.|.++.+.
T Consensus       196 g~~dG~~fd~~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~~  275 (280)
T 1q1c_A          196 GYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  275 (280)
T ss_dssp             EEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             EEeCCEEEecCCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeCC
Confidence            99999999999999999998644469999999999999999999999999999988776789999999999999999988


Q ss_pred             ccccc
Q psy4385         255 KDTWQ  259 (473)
Q Consensus       255 ~~~~~  259 (473)
                      ++.|+
T Consensus       276 ~~~W~  280 (280)
T 1q1c_A          276 KESWE  280 (280)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            87774

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-41  Score=332.29  Aligned_cols=280  Identities=30%  Similarity=0.476  Sum_probs=209.4

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecC-CCEEeccCCCCccEEEEeCCC-ccchhHHHHhccCCCCcEEEEE
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLD-GTVFDSSKTRGEPFEFDLGKG-QVIKAWDRGIATMKKDEVAVFT  105 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~d-g~~~~st~~~~~p~~~~~g~~-~~~~g~~~~l~~m~~Ge~~~v~  105 (473)
                      .++||.|+|+++|+|. .|..||.|+|||++++.+ |++|++|+..+.|+.|.+|.+ .+|+||+++|.+|++||+++|+
T Consensus        47 ~~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~  125 (338)
T 2if4_A           47 LDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (338)
T ss_dssp             EETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE
T ss_pred             CCCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE
Confidence            4679999999999997 799999999999999984 999999987778999999999 8999999999999999999999


Q ss_pred             ecCCCCcCCCCC--CCCCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEE
Q psy4385         106 CKPEYAYGKQGS--PPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQ  183 (473)
Q Consensus       106 i~~~~ayg~~g~--~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~  183 (473)
                      |||+++||..|.  ++.||++++++|+|+|+++....                                           
T Consensus       126 i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~-------------------------------------------  162 (338)
T 2if4_A          126 VGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETK-------------------------------------------  162 (338)
T ss_dssp             ECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCC-------------------------------------------
T ss_pred             ECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCc-------------------------------------------
Confidence            999999999997  47899999999999999875210                                           


Q ss_pred             eceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccccCch
Q psy4385         184 EGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSD  263 (473)
Q Consensus       184 ~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~  263 (473)
                                                                                           .....|.++..
T Consensus       163 ---------------------------------------------------------------------e~~~~~~~~~~  173 (338)
T 2if4_A          163 ---------------------------------------------------------------------EGKARSDMTVE  173 (338)
T ss_dssp             ---------------------------------------------------------------------CCBTTTBCCHH
T ss_pred             ---------------------------------------------------------------------cccccccCCHH
Confidence                                                                                 01234666778


Q ss_pred             hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG--FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      +++..+..++.+|+.+++.|+|.+|+..|++|+.+.+....  ...............+|+|+|.||+++++|++|+.+|
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88999999999999999999999999999999977653210  1111122233444569999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKH  420 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~  420 (473)
                      +++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..|..+........+.+++.|++||......
T Consensus       254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999998888888888889999999765543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=7.7e-40  Score=321.02  Aligned_cols=298  Identities=40%  Similarity=0.710  Sum_probs=265.4

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCC
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQH  224 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~  224 (473)
                      .|++++++|+++|.|..+|..|++|+|||.|+++|++||+++++|.+|.|....++++|+.|+..|++||++.+.++|.+
T Consensus        23 ~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~~g~~fd~~~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~  102 (336)
T 1p5q_A           23 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSY  102 (336)
T ss_dssp             CTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTT
T ss_pred             CCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEECCEEEecCCeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCcc
Confidence            78999999999999988999999999999999999999999999999999766689999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC
Q psy4385         225 LWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG  304 (473)
Q Consensus       225 ~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~  304 (473)
                      +|+..|.....+|+++.+.|++.|.+|+++...|.+.....+..+..+..+|+.+++.|+|.+|+..|++|+.+.+....
T Consensus       103 ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~  182 (336)
T 1p5q_A          103 AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS  182 (336)
T ss_dssp             TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC
T ss_pred             ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc
Confidence            99999987767999999999999999999999999999999999999999999999999999999999999999888766


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         305 FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      ...+....+.+....+++|+|.|++++++|++|+.+|++|++++|+++++|+++|.+|..+|+|++|+.+|++|++++|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  262 (336)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            66777788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchHHHHHhccCchhhhhcCccchh
Q psy4385         385 NKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEWGAE  445 (473)
Q Consensus       385 ~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (473)
                      +..++..++.+...+++..+++++.|++||.++...+.+.....  ...++. ....|.++
T Consensus       263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~w~~~  320 (336)
T 1p5q_A          263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEA--SSGDHP-TDTEMKEE  320 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cCCCcc-cccccccc
Confidence            99999999999999999999999999999998866443322211  123333 46667666

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=2.9e-41  Score=331.38  Aligned_cols=223  Identities=43%  Similarity=0.749  Sum_probs=103.3

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      .+++||+|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|+|
T Consensus         8 ~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge~~~~~i   87 (356)
T 3jxv_A            8 IGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI   87 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCCEEEEEE
Confidence            36789999999999996689999999999999999999999999888899999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee-ccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA-EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE  184 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~-~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~  184 (473)
                      ||++|||+.|.++.|||+++|+|+|+|++|.. .++.  .|+++.++++++|.|+.+|..++.|+|||.|++ +|++|++
T Consensus        88 p~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~--~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~  165 (356)
T 3jxv_A           88 PPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIA--KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSK  165 (356)
T ss_dssp             ------------------------------CCEEETT--SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             ChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccc--cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEec
Confidence            99999999999999999999999999999975 4554  789999999999999999999999999999999 9999987


Q ss_pred             c-eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCC----CCCCCCceeeeeecccccc
Q psy4385         185 G-TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLG----VPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       185 ~-~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~----ip~~~~~~y~i~L~~~~~~  254 (473)
                      . ++.|.+|++.   +++||+.||.+|++||++.+.++|+++||..|.+...    ||+++.+.|+++|.+|...
T Consensus       166 ~~~~~f~~g~~~---v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v  237 (356)
T 3jxv_A          166 SEGVEFTVKDGH---LCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV  237 (356)
T ss_dssp             EEEEEEEGGGCS---SSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECE
T ss_pred             cCCEEEEeCCCC---cchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecc
Confidence            5 7899999998   9999999999999999999999999999999887643    9999999999999998763

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.4e-36  Score=298.06  Aligned_cols=220  Identities=31%  Similarity=0.599  Sum_probs=202.6

Q ss_pred             eecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEE
Q psy4385          25 DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVF  104 (473)
Q Consensus        25 ~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v  104 (473)
                      ++..|+++.++++++|.|..+|..||.|+|||++++.||++|+++    .++.|.+|.+.+++||+.+|.+|++||+++|
T Consensus       122 di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~  197 (356)
T 3jxv_A          122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLL  197 (356)
T ss_dssp             ETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEE
T ss_pred             ccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEE
Confidence            345789999999999999889999999999999999999999998    3799999999999999999999999999999


Q ss_pred             EecCCCCcCCCCCCC-----CCCCCCceEEEEEEEeeee-ccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-
Q psy4385         105 TCKPEYAYGKQGSPP-----TIPPDSTLVFEVEMISWEA-EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-  177 (473)
Q Consensus       105 ~i~~~~ayg~~g~~~-----~ip~~~~l~~~v~l~~~~~-~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-  177 (473)
                      +|||+++||+.|+++     .|||+++|+|+|+|++|.. .+++  .|.++.++++++|.|+.+|..++.|++||.|++ 
T Consensus       198 ~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~--~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~  275 (356)
T 3jxv_A          198 AVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG--DDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQ  275 (356)
T ss_dssp             EECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEES--TTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEES
T ss_pred             EEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccc--cccceeEEeeecccccCCCCCCCEEEEEEEEEEC
Confidence            999999999999875     5999999999999999976 4455  788999999999999999999999999999999 


Q ss_pred             CCeEEEec------eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCC-CCCCCCCCCceeeeeecc
Q psy4385         178 EGKVFQEG------TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGND-KLGVPSNKPATYTITMNN  250 (473)
Q Consensus       178 ~g~~~~~~------~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~-~~~ip~~~~~~y~i~L~~  250 (473)
                      +|++|++.      |+.|.+|.+.   +++||+.+|..|+.||++.+.|+|.++||..+.. ...||+++.+.|++.|.+
T Consensus       276 dG~~fd~~~~~~~~p~~f~~G~g~---~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~  352 (356)
T 3jxv_A          276 DGTVFLKKGHDEQEPFEFKTDEEA---VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVS  352 (356)
T ss_dssp             SSCEEEEESCTTSCCCEEETTTTS---SCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEE
T ss_pred             CCCEEeeccccCCcCEEEEECCCc---cchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEE
Confidence            99999864      6899999987   9999999999999999999999999999988752 345899999999999998


Q ss_pred             ccc
Q psy4385         251 FEK  253 (473)
Q Consensus       251 ~~~  253 (473)
                      +.+
T Consensus       353 ~~~  355 (356)
T 3jxv_A          353 FVK  355 (356)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.96  E-value=3.1e-29  Score=245.58  Aligned_cols=272  Identities=22%  Similarity=0.331  Sum_probs=196.5

Q ss_pred             cCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCc---cchhHHHHhccC
Q psy4385          20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQ---VIKAWDRGIATM   96 (473)
Q Consensus        20 ~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~---~~~g~~~~l~~m   96 (473)
                      ...+++++.++||.|+|+++|+|...|..|+.|+|||++++ +|++||++     |+.|.+|.|.   ++++|+.||.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~   88 (336)
T 1p5q_A           15 VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRM   88 (336)
T ss_dssp             -------CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTC
T ss_pred             cccceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcC
Confidence            35678889999999999999999877999999999999999 99999997     8999999886   589999999999


Q ss_pred             CCCcEEEEEecCCCCcCCCCCCC-CCCCCCceEEEEEEEeeeeccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEe
Q psy4385          97 KKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWEAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKG  175 (473)
Q Consensus        97 ~~Ge~~~v~i~~~~ayg~~g~~~-~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g  175 (473)
                      ++||++.|.|+|+++||..|.+. .||+++++.|++.|.++......       ..+.+..     .|...         
T Consensus        89 ~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~-------~~~a~~~-----~p~~a---------  147 (336)
T 1p5q_A           89 EKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES-------WEMNSEE-----KLEQS---------  147 (336)
T ss_dssp             CTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCG-------GGCCHHH-----HHHHH---------
T ss_pred             CCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccch-------hcCCHHH-----HHHHH---------
Confidence            99999999999999999999876 69999999999999998742111       0000000     00000         


Q ss_pred             eeCCeEEEe-ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccccc
Q psy4385         176 ECEGKVFQE-GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       176 ~~~g~~~~~-~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~  254 (473)
                          ..+.. ...-+..|+-  ..-+.-++.|+...           |..               ...         .. 
T Consensus       148 ----~~~~~~g~~~~~~g~~--~~A~~~y~~Al~~~-----------p~~---------------~~~---------~~-  185 (336)
T 1p5q_A          148 ----TIVKERGTVYFKEGKY--KQALLQYKKIVSWL-----------EYE---------------SSF---------SN-  185 (336)
T ss_dssp             ----HHHHHHHHHHHHHTCH--HHHHHHHHHHHHHT-----------TTC---------------CCC---------CS-
T ss_pred             ----HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHh-----------hcc---------------ccC---------Ch-
Confidence                00000 0000001110  00111222222221           000               000         00 


Q ss_pred             ccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh
Q psy4385         255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA  334 (473)
Q Consensus       255 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  334 (473)
                          ..........+..+.++|.++++.|+|.+|+..|++++               .++|.+..+++++|.+|+.+++|
T Consensus       186 ----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~g~~  246 (336)
T 1p5q_A          186 ----EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL---------------ELDSNNEKGLSRRGEAHLAVNDF  246 (336)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHCCCH
Confidence                00112233446889999999999999999999999999               66667789999999999999999


Q ss_pred             hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q psy4385         335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAE-KDFQKVL  379 (473)
Q Consensus       335 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~-~~~~~al  379 (473)
                      ++|+.+|+++++++|++..+++.++.++..++++++|. ..|++++
T Consensus       247 ~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          247 ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999984 4555555

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.96  E-value=8.4e-29  Score=207.87  Aligned_cols=133  Identities=57%  Similarity=0.973  Sum_probs=113.0

Q ss_pred             ccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCC
Q psy4385          19 VESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK   98 (473)
Q Consensus        19 ~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~   98 (473)
                      .+|+|+++.+++|++|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++
T Consensus         3 ~~~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~   82 (135)
T 1r9h_A            3 GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTK   82 (135)
T ss_dssp             --CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCB
T ss_pred             ccceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCC
Confidence            35788888899999999999999975799999999999999999999999976668999999999999999999999999


Q ss_pred             CcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeeeccCCCCCCCCceE
Q psy4385          99 DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAEDISPTHDGGIRR  151 (473)
Q Consensus        99 Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~~~~~~~~d~~i~k  151 (473)
                      |++++|.|||++|||..|.++.|||+++++|+|+|++|...++++.+|++++|
T Consensus        83 Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~~l~~~~d~~v~k  135 (135)
T 1r9h_A           83 GEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDISPDRDGTILR  135 (135)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-------------
T ss_pred             CCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEeecCCcCcCCCCcccC
Confidence            99999999999999999999999999999999999999988898889988875

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.95  E-value=7.8e-28  Score=204.14  Aligned_cols=122  Identities=53%  Similarity=0.903  Sum_probs=116.2

Q ss_pred             hcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccC
Q psy4385          17 RMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATM   96 (473)
Q Consensus        17 ~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m   96 (473)
                      ...+++|+++..|+||+|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+.+++||+++|.+|
T Consensus        22 ~~~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm  101 (144)
T 3o5e_A           22 VAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATM  101 (144)
T ss_dssp             HHHHCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTC
T ss_pred             cccccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCC
Confidence            34578999999999999999999999867999999999999999999999999888889999999999999999999999


Q ss_pred             CCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385          97 KKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus        97 ~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ++||+++|+|||++|||..|.++.|||+++|+|+|+|++|..
T Consensus       102 ~~Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          102 KKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             CBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence            999999999999999999999999999999999999999863

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.95  E-value=1.2e-27  Score=199.08  Aligned_cols=123  Identities=53%  Similarity=0.894  Sum_probs=116.5

Q ss_pred             hhcccCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhcc
Q psy4385          16 IRMVESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIAT   95 (473)
Q Consensus        16 ~~~~~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~   95 (473)
                      ..+.++.|++...|+|++|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+
T Consensus         5 ~~~~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~g   84 (128)
T 3o5q_A            5 TVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVAT   84 (128)
T ss_dssp             HHHHHCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTT
T ss_pred             ccccccceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhc
Confidence            34568999999999999999999999976799999999999999999999999987778999999999999999999999


Q ss_pred             CCCCcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385          96 MKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus        96 m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      |++|++++|.|||++|||..|.++.|||+++|+|+|+|++|..
T Consensus        85 m~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           85 MKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999999999999999999999999999999999999863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.94  E-value=1.1e-26  Score=237.07  Aligned_cols=271  Identities=19%  Similarity=0.228  Sum_probs=186.0

Q ss_pred             cCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccC
Q psy4385         140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYK  213 (473)
Q Consensus       140 ~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~g  213 (473)
                      ++++..++++.++++++|.|..+|..|+.|+|||+|++ +|++|++     .|++|.+|.+.   +++||+.+|.+|++|
T Consensus        24 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~---~i~g~~~~l~~m~~G  100 (457)
T 1kt0_A           24 DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQ---VIKAWDIGVATMKRG  100 (457)
T ss_dssp             ---------CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTT---SCHHHHHHHTTCCTT
T ss_pred             cccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcc---hhhHHHHHHhhCCCC
Confidence            44555788999999999999878999999999999998 9999997     38899999987   999999999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccc---------------cccCchh---HHHhh------
Q psy4385         214 EKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDT---------------WQLNSDE---KLEQG------  269 (473)
Q Consensus       214 E~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~---------------~~~~~~~---~~~~a------  269 (473)
                      |++.|.|||.++||..|.+. .||+++.+.|++.|.++....-.               +..+..-   .....      
T Consensus       101 e~~~~~i~~~~~yg~~g~~~-~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~~g~  179 (457)
T 1kt0_A          101 EICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGR  179 (457)
T ss_dssp             CEEEEEECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEETTE
T ss_pred             CEEEEEEChHHhccccCCCC-CCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEeCCe
Confidence            99999999999999988654 69999999999999887642000               0000000   00000      


Q ss_pred             -------HHHHhhcchhhhcccHHHHHHHHHH----HhhhhcCC-----------------------------CCCChhH
Q psy4385         270 -------KLLKERGTTYFKQDKFELACRNYKK----AIPYLDFD-----------------------------GGFEGEQ  309 (473)
Q Consensus       270 -------~~~~~~G~~~~~~~~~~~A~~~y~~----al~~~~~~-----------------------------~~~~~~~  309 (473)
                             ......|....-...++.|+..+++    +|.+.+..                             .......
T Consensus       180 ~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~  259 (457)
T 1kt0_A          180 MFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEM  259 (457)
T ss_dssp             EEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGS
T ss_pred             EEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhc
Confidence                   0000001111112245556655555    33221110                             0000112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHH
Q psy4385         310 ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---------------EKAFFRRGNAYLDLNEPELAEKD  374 (473)
Q Consensus       310 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---------------~ka~~~~g~a~~~lg~~~~A~~~  374 (473)
                      ....++..+.++.++|.+++++++|+.|+..|++|++++|.+               ..+|+++|.||+.+++|++|+.+
T Consensus       260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  339 (457)
T 1kt0_A          260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC  339 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            235678889999999999999999999999999999999998               79999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         375 FQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       375 ~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      |.+|++++|++..++..++.++..+++..++. ..|.+++.
T Consensus       340 ~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~~~~~al~  379 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAK-GDFEKVLE  379 (457)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-HHHHHHHH
Confidence            99999999999999999999998887666543 34444443

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.93  E-value=2e-25  Score=183.79  Aligned_cols=109  Identities=42%  Similarity=0.751  Sum_probs=102.4

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCC-------CccEEEEeCCCccchhHHHHhccCCCCc
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTR-------GEPFEFDLGKGQVIKAWDRGIATMKKDE  100 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~-------~~p~~~~~g~~~~~~g~~~~l~~m~~Ge  100 (473)
                      .++|++|+|+++|+|...|+.||.|+|||++++.||++|++|+..       +.|+.|.+|.+.+++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            468999999999999767999999999999999999999999753       4799999999999999999999999999


Q ss_pred             EEEEEecCCCCcCCCCCCC-CCCCCCceEEEEEEEee
Q psy4385         101 VAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISW  136 (473)
Q Consensus       101 ~~~v~i~~~~ayg~~g~~~-~ip~~~~l~~~v~l~~~  136 (473)
                      +++|.|||++|||+.|.++ .|||+++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999999876 79999999999999987

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.93  E-value=4.2e-25  Score=216.32  Aligned_cols=218  Identities=16%  Similarity=0.200  Sum_probs=183.2

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee--CCeEEEec-----eeeEEeCCC-cccCCcHHHHHHHHhcccCcEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC--EGKVFQEG-----TFSFVLGEG-SEYDIPENLEKALEKFKYKEKSR  217 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~--~g~~~~~~-----~~~~~lg~~-~~~~~~~gle~al~~m~~gE~~~  217 (473)
                      +.++.++++++|.|. .|..|+.|+|||.|++  +|++|++.     +++|.+|.+ .   +++||+.+|.+|++||++.
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~---~i~g~e~~l~~m~~Ge~~~  123 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKK---ELAGLAIGVASMKSGERAL  123 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCG---GGHHHHHHHHHCCBTCEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCc---ccHHHHHHHhcCCCCCeEE
Confidence            356899999999995 8999999999999998  59999973     899999987 6   9999999999999999999


Q ss_pred             EEecCCCCCCCCCCCC-CCCCCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHh
Q psy4385         218 LFVQPQHLWSGKGNDK-LGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAI  296 (473)
Q Consensus       218 ~~i~~~~~~~~~g~~~-~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al  296 (473)
                      |.|+|.++||..+... ..||+++.+.|.+.|..+....+.+.                               .+..++
T Consensus       124 ~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~-------------------------------~~~~~~  172 (338)
T 2if4_A          124 VHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKA-------------------------------RSDMTV  172 (338)
T ss_dssp             EEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBT-------------------------------TTBCCH
T ss_pred             EEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccc-------------------------------cccCCH
Confidence            9999999999988642 35999999999999988876322210                               111111


Q ss_pred             hhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH-----------------HHHHHHH
Q psy4385         297 PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-----------------KAFFRRG  359 (473)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~-----------------ka~~~~g  359 (473)
                                     ...+..+..+.++|.++++.++|++|+..|.+|+.++|++.                 .+|+++|
T Consensus       173 ---------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla  237 (338)
T 2if4_A          173 ---------------EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA  237 (338)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHH
Confidence                           22334466788999999999999999999999999999877                 4999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         360 NAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       360 ~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      .||+.+++|++|+.+|.++++++|++..++..++.++..+++..++.. .|++++
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al  291 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD-DFRKAQ  291 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999999988876665443 444443

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.93  E-value=3.4e-25  Score=180.53  Aligned_cols=110  Identities=48%  Similarity=0.799  Sum_probs=103.9

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      ..++|+.|+++++|+|...|+.||.|+|||++++.||++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++|.|
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            35679999999999997449999999999999999999999998777899999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      ||++|||..+.++.|||+++++|+|+|+++
T Consensus        83 p~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            999999999988899999999999999987

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.92  E-value=4.5e-25  Score=178.09  Aligned_cols=106  Identities=49%  Similarity=0.874  Sum_probs=101.0

Q ss_pred             CEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCC
Q psy4385          31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEY  110 (473)
Q Consensus        31 gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~  110 (473)
                      ||.|+++++|+|...|+.||.|++||++++.||++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            78999999999975599999999999999999999999987667999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         111 AYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       111 ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |||+.+.++.|||+++++|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999988899999999999999987

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.92  E-value=1.2e-24  Score=181.45  Aligned_cols=115  Identities=43%  Similarity=0.829  Sum_probs=104.7

Q ss_pred             ceecCCCCEEEEEEeCC-CC-CCCCCCCCEEEEEEEEEe-cCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCc
Q psy4385          24 IDLTDDGGVLKEIKTPG-VG-DTTPSAGCKVKVHYTGTL-LDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDE  100 (473)
Q Consensus        24 ~~~~~~~gv~~~i~~~g-~g-~~~~~~gd~V~v~y~~~~-~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge  100 (473)
                      ++.+.+++++++++++| .| ...|+.||.|+|||++++ .||++|++|+..+.|+.|.+|.+.+++||+++|.+|++|+
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge   89 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE   89 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence            34457788888999977 44 247999999999999999 7999999998777899999999999999999999999999


Q ss_pred             EEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         101 VAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       101 ~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      +++|.|||++|||..+.++.|||+++++|+|+|+++..
T Consensus        90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999999889999999999999999864

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.92  E-value=1.2e-24  Score=181.70  Aligned_cols=109  Identities=49%  Similarity=0.790  Sum_probs=103.8

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      +.++|+.|+++++|+|. .|+.||.|+|||++++.||++|++++..+.|+.|.+|.+.+++||+++|.+|++||+++|.|
T Consensus        25 ~~~~gl~~~~l~~G~G~-~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i  103 (133)
T 2y78_A           25 TTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI  103 (133)
T ss_dssp             ECTTSCEEEEEECCSSC-BCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence            46789999999999996 79999999999999999999999998777899999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      ||++|||+.+.++.|||+++++|+|+|++|
T Consensus       104 p~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          104 PPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             CcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            999999999988889999999999999975

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.3e-25  Score=186.64  Aligned_cols=115  Identities=37%  Similarity=0.648  Sum_probs=100.0

Q ss_pred             cCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCC
Q psy4385          20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLL-DGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK   98 (473)
Q Consensus        20 ~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~   98 (473)
                      ++.+++  .++||+|+++++|+|. .+..||.|+|||++++. +|++|++++..+.|+.|.+|.+.+++||+++|.+|++
T Consensus        18 ~~~~v~--~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDIS--GDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESS--SSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceee--CCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            445554  8899999999999997 68899999999999998 6999999987778999999999999999999999999


Q ss_pred             CcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385          99 DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus        99 Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |++++|.|||++|||..+.++.|||+++|+|+|+|++|.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            999999999999999999988999999999999999984

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.92  E-value=1e-24  Score=181.43  Aligned_cols=109  Identities=53%  Similarity=0.917  Sum_probs=102.7

Q ss_pred             CCCCEEEE--EEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEE
Q psy4385          28 DDGGVLKE--IKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFT  105 (473)
Q Consensus        28 ~~~gv~~~--i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~  105 (473)
                      +++|+.++  ++++|+|...|+.||.|+|||++++.||++|++++..+.|+.|.+|.+.+++||+++|.+|++||+++|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            56788888  9999999844999999999999999999999999887789999999999999999999999999999999


Q ss_pred             ecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         106 CKPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       106 i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |||++|||+.+.++.|||+++++|+|+|++|
T Consensus       100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999998899999999999999975

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.91  E-value=4.1e-24  Score=191.32  Aligned_cols=104  Identities=36%  Similarity=0.601  Sum_probs=99.3

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEec
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK  107 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~  107 (473)
                      .++|+.|+++++|+|. .|..||.|+|||++++.||++||+|   +.|+.|.+|  .+|+||+++|.+|++|++++|+||
T Consensus       115 ~~sGl~y~vl~~G~G~-~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IP  188 (219)
T 3oe2_A          115 LADGILMTELTPGTGP-KPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIP  188 (219)
T ss_dssp             CGGGCEEEEEECCCSC-CCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEecCCCc-cCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEEC
Confidence            5679999999999997 7999999999999999999999998   679999997  799999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         108 PEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       108 ~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |++|||..|.++.|||+++|+|+|+|++|.
T Consensus       189 p~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          189 SDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             chhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            999999999988899999999999999985

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.91  E-value=7.2e-25  Score=187.38  Aligned_cols=114  Identities=27%  Similarity=0.462  Sum_probs=97.6

Q ss_pred             ecCCCCEEEEEEeCCCCCC-CCCCCCEEEEEEEEEec--CCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEE
Q psy4385          26 LTDDGGVLKEIKTPGVGDT-TPSAGCKVKVHYTGTLL--DGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVA  102 (473)
Q Consensus        26 ~~~~~gv~~~i~~~g~g~~-~~~~gd~V~v~y~~~~~--dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~  102 (473)
                      .++++||.|+|+++|+|.. .++.|+.|+|||++++.  ||++||||+.+++|+.|.+|.+++|+||++||.+|++||++
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            4578899999999999973 23689999999999995  59999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCcCC--------CCCCCC-----------------------------CCCCCceEEEEEEEeeeec
Q psy4385         103 VFTCKPEYAYGK--------QGSPPT-----------------------------IPPDSTLVFEVEMISWEAE  139 (473)
Q Consensus       103 ~v~i~~~~ayg~--------~g~~~~-----------------------------ip~~~~l~~~v~l~~~~~~  139 (473)
                      +|+|||++|||.        ......                             |+++++|+|+|||++|...
T Consensus        86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P  159 (165)
T 2lkn_A           86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESP  159 (165)
T ss_dssp             EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECT
T ss_pred             EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCC
Confidence            999999999992        001111                             3345789999999999753

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.91  E-value=2e-24  Score=186.59  Aligned_cols=110  Identities=38%  Similarity=0.614  Sum_probs=103.0

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      +.++|++|+++++|+|...|..||.|+|||++++.||++|++++.++.|+.|.+  +.+|+||+++|.+|++|++++|+|
T Consensus        34 ~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~I  111 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLFI  111 (167)
T ss_dssp             ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEEE
Confidence            467899999999999973499999999999999999999999987778999999  589999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ||++|||..|.++.||||++|+|+|+|++|..
T Consensus       112 p~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          112 PYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             CGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             CchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            99999999999889999999999999999974

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.91  E-value=9.5e-24  Score=175.10  Aligned_cols=110  Identities=32%  Similarity=0.588  Sum_probs=102.0

Q ss_pred             cCCCCEEEEEEeCCC--CCCCCCCCCEEEEEEEEEec-CCCEEeccCC--CCccEEEEeCCCccchhHHHHhccCCCCcE
Q psy4385          27 TDDGGVLKEIKTPGV--GDTTPSAGCKVKVHYTGTLL-DGTVFDSSKT--RGEPFEFDLGKGQVIKAWDRGIATMKKDEV  101 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~--g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~--~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~  101 (473)
                      ..++|+.++++++|.  | ..|+.||.|+|||++++. ||++|++|+.  .+.|+.|.+|.+.+++||+++|.+|++|++
T Consensus         9 ~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            9 IPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             CCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             ECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            357899999999998  5 479999999999999998 9999999974  467999999999999999999999999999


Q ss_pred             EEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         102 AVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       102 ~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ++|.|||++|||+.|.+ .|||+++|+|+|+|+++..
T Consensus        88 ~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            99999999999999965 8999999999999999863

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.91  E-value=7.9e-24  Score=190.28  Aligned_cols=110  Identities=48%  Similarity=0.794  Sum_probs=105.0

Q ss_pred             ecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEE
Q psy4385          26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFT  105 (473)
Q Consensus        26 ~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~  105 (473)
                      .+.++|++|+++++|+|. .|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++|++++|.
T Consensus       100 ~~~~sGl~~~vl~~G~G~-~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~  178 (209)
T 3uf8_A          100 VTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  178 (209)
T ss_dssp             EECTTSCEEEEEECCCSC-BCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred             cCCCCceEEEEEEcCCCC-cCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE
Confidence            456789999999999997 6999999999999999999999999888889999999999999999999999999999999


Q ss_pred             ecCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         106 CKPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       106 i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |||++|||+.|.++.|||+++|+|+|+|++|
T Consensus       179 Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          179 IPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999998899999999999999975

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.91  E-value=1.5e-23  Score=171.91  Aligned_cols=112  Identities=33%  Similarity=0.502  Sum_probs=102.4

Q ss_pred             cCccceecCCCCEEEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCC
Q psy4385          20 ESKAIDLTDDGGVLKEIKTPGVGD-TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKK   98 (473)
Q Consensus        20 ~~~~~~~~~~~gv~~~i~~~g~g~-~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~   98 (473)
                      +|+++  +.+++++|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+.+++||+++|.+|++
T Consensus         5 ~~~~~--~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~   78 (118)
T 2awg_A            5 EWLDI--LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDV   78 (118)
T ss_dssp             CEEES--SSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred             cceEE--CCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCC
Confidence            44444  45677999999999986 36999999999999999999999985    6999999999999999999999999


Q ss_pred             CcEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385          99 DEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus        99 Ge~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |++++|.|||++|||..+.++.|||+++++|+|+|+++.
T Consensus        79 Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           79 GETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            999999999999999999988999999999999999874

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=179.30  Aligned_cols=109  Identities=32%  Similarity=0.501  Sum_probs=100.3

Q ss_pred             cCCCCEEEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEE
Q psy4385          27 TDDGGVLKEIKTPGVGD-TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFT  105 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~-~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~  105 (473)
                      +.+|.+.|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+.+++||+++|.+|++|++++|+
T Consensus        40 ~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~  115 (157)
T 2jwx_A           40 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAMVT  115 (157)
T ss_dssp             SSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEE
T ss_pred             CCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            34555689999999985 36999999999999999999999984    69999999999999999999999999999999


Q ss_pred             ecCCCCcCCCC-CCCCCCCCCceEEEEEEEeeeec
Q psy4385         106 CKPEYAYGKQG-SPPTIPPDSTLVFEVEMISWEAE  139 (473)
Q Consensus       106 i~~~~ayg~~g-~~~~ip~~~~l~~~v~l~~~~~~  139 (473)
                      |||++|||..| .++.|||+++|+|+|+|+++...
T Consensus       116 IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          116 ADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             ECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             ECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            99999999999 77889999999999999999754

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.90  E-value=1e-23  Score=189.13  Aligned_cols=109  Identities=32%  Similarity=0.556  Sum_probs=102.8

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      ++++|+.|+++++|+|. .|..||.|+|||++++.||++|++++.++.|+.|.+  +.+|+||+++|.+|++|++++|+|
T Consensus       103 ~~~sGl~y~vl~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I  179 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV  179 (213)
T ss_dssp             ECTTSCEEEEEECCCSC-CCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCccEEEEEecCCCc-cCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence            46789999999999996 799999999999999999999999987778999999  579999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ||+++||..|.++.|||+++|+|+|+|+++..
T Consensus       180 P~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          180 PSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             CGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             CchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            99999999998889999999999999999863

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=1.8e-23  Score=183.56  Aligned_cols=111  Identities=32%  Similarity=0.504  Sum_probs=104.1

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCCEEeccCCCCccEEEEeCCC-ccchhHHHHhccCCCCcEEEEE
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLL-DGTVFDSSKTRGEPFEFDLGKG-QVIKAWDRGIATMKKDEVAVFT  105 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~~~~g~~-~~~~g~~~~l~~m~~Ge~~~v~  105 (473)
                      .++|++|+++++|+|. .|..||.|+|||++++. ||++|++|+..+.|+.|.+|.+ .+++||+++|.+|++|++++|.
T Consensus        47 ~~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~  125 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (180)
T ss_dssp             EETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE
Confidence            4579999999999997 89999999999999998 6999999998888999999999 9999999999999999999999


Q ss_pred             ecCCCCcCCCCC--CCCCCCCCceEEEEEEEeeeec
Q psy4385         106 CKPEYAYGKQGS--PPTIPPDSTLVFEVEMISWEAE  139 (473)
Q Consensus       106 i~~~~ayg~~g~--~~~ip~~~~l~~~v~l~~~~~~  139 (473)
                      |||+++||..|.  ++.|||+++|+|+|+|+++...
T Consensus       126 iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~  161 (180)
T 2f4e_A          126 VGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDET  161 (180)
T ss_dssp             ECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCB
T ss_pred             ECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecC
Confidence            999999999997  5689999999999999999754

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.90  E-value=9.6e-24  Score=175.79  Aligned_cols=109  Identities=40%  Similarity=0.690  Sum_probs=101.6

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhcc------CCCCc
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIAT------MKKDE  100 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~------m~~Ge  100 (473)
                      +.++|++|+++++|+|. .|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G~-~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSSC-BCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            35689999999999997 799999999999999999999999986667999999999999999999998      99999


Q ss_pred             EEEEEecCCCCcCCCCCC-----CCCCCCCceEEEEEEEee
Q psy4385         101 VAVFTCKPEYAYGKQGSP-----PTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       101 ~~~v~i~~~~ayg~~g~~-----~~ip~~~~l~~~v~l~~~  136 (473)
                      +++|.|||++|||+.+.+     +.|||+++++|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999998863     579999999999999986

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.89  E-value=5.1e-23  Score=185.83  Aligned_cols=105  Identities=44%  Similarity=0.800  Sum_probs=99.8

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEec
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK  107 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~  107 (473)
                      .++|+.|+++++|+|. .|..||.|+|||++++.||++|++|+.++.|+.|.+  +.+|+||+++|.+|++|++++|+||
T Consensus       119 ~~sGl~y~vl~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSSC-CCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccCc-cccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            4789999999999997 799999999999999999999999998788999999  5899999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         108 PEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       108 ~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      |+++||..+.++ |||+++++|+|+|++|
T Consensus       196 ~~laYG~~g~~~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVPG-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBTT-BCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCCC-CCCCCEEEEEEEEEEe
Confidence            999999999876 9999999999999987

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=173.02  Aligned_cols=116  Identities=32%  Similarity=0.462  Sum_probs=104.7

Q ss_pred             cccCccceecCCCCEEEEEEeCCCCC-CCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccC
Q psy4385          18 MVESKAIDLTDDGGVLKEIKTPGVGD-TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATM   96 (473)
Q Consensus        18 ~~~~~~~~~~~~~gv~~~i~~~g~g~-~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m   96 (473)
                      ..++++++  .+++++|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+.+++||+++|.+|
T Consensus         7 ~~~~~~~~--~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm   80 (135)
T 2d9f_A            7 GEEWLDIL--GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLM   80 (135)
T ss_dssp             CSSCEESS--SSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGS
T ss_pred             cccCcEEC--CCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCC
Confidence            34555554  5677999999999985 46999999999999999999999984    69999999999999999999999


Q ss_pred             CCCcEEEEEecCCCCcCCCC-CCCCCCCCCceEEEEEEEeeeec
Q psy4385          97 KKDEVAVFTCKPEYAYGKQG-SPPTIPPDSTLVFEVEMISWEAE  139 (473)
Q Consensus        97 ~~Ge~~~v~i~~~~ayg~~g-~~~~ip~~~~l~~~v~l~~~~~~  139 (473)
                      ++|++++|.|||++|||..+ .++.|||+++++|+|+|+++...
T Consensus        81 ~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~  124 (135)
T 2d9f_A           81 DVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDR  124 (135)
T ss_dssp             CTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESS
T ss_pred             CCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecC
Confidence            99999999999999999999 77889999999999999999753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.88  E-value=1.5e-22  Score=176.03  Aligned_cols=154  Identities=23%  Similarity=0.377  Sum_probs=131.8

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFD---GGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK  338 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  338 (473)
                      .++++..+..+++.|+.+|+.|+|..|+..|.+|+.+++..   ....++++...++....+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45677889999999999999999999999999999875431   223445566779999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-AAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      .+|+++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++. .+...|..+...++++.+++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999 77999999999999999999999999996

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=159.33  Aligned_cols=95  Identities=46%  Similarity=0.809  Sum_probs=90.6

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCC
Q psy4385          44 TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPP  123 (473)
Q Consensus        44 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~  123 (473)
                      ..|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++|++++|.|||++|||..+.++.|||
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            47899999999999999999999999877789999999999999999999999999999999999999999998889999


Q ss_pred             CCceEEEEEEEeeee
Q psy4385         124 DSTLVFEVEMISWEA  138 (473)
Q Consensus       124 ~~~l~~~v~l~~~~~  138 (473)
                      +++++|+|+|+++..
T Consensus        84 ~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           84 GATLVFEVELLKIER   98 (102)
T ss_dssp             TCCEEEEEEEEEEGG
T ss_pred             CCeEEEEEEEEEecc
Confidence            999999999999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=1.7e-20  Score=156.08  Aligned_cols=116  Identities=28%  Similarity=0.485  Sum_probs=110.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ++.+..++++|+.+|+.|+|++|+..|++|+               +++|.++.+|+++|.|++++|++++|+.+|++++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---------------KRDPENAILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            5678999999999999999999999999999               6677789999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      +++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+|..++..|+.|.
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.84  E-value=9.2e-20  Score=163.81  Aligned_cols=181  Identities=24%  Similarity=0.369  Sum_probs=138.3

Q ss_pred             CceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChh-HHHHHHHHHHH
Q psy4385         241 PATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE-QETERKKTLTA  319 (473)
Q Consensus       241 ~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~  319 (473)
                      .......+..|+++++.|.++..+.+..+..+..+|+.++..|+|.+|+..|.+++.+.+........ ...........
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            34455567889999999999999999999999999999999999999999999999887764433222 22233445578


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++++|.|++++++|++|+.+|+++++++|.++.+++++|.+|..+|+|++|+..|+++++++|++..++..++.+...+
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCC
Q psy4385         400 REQKIKEKQVYANMFDKFAKHD  421 (473)
Q Consensus       400 ~~~~~~~k~~~~~~f~~~~~~~  421 (473)
                      ++..+.++..|++||.+.....
T Consensus       170 ~~~~~~~~~~~~~~f~~~~~~~  191 (198)
T 2fbn_A          170 KEARKKDKLTFGGMFDKGPLYE  191 (198)
T ss_dssp             HHHHC-----------------
T ss_pred             HHHHHHHHHHHHHHhcccchhh
Confidence            9999999999999998755443

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.82  E-value=5e-20  Score=173.41  Aligned_cols=115  Identities=30%  Similarity=0.629  Sum_probs=103.7

Q ss_pred             CccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCc---cchhHHHHhccCC
Q psy4385          21 SKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQ---VIKAWDRGIATMK   97 (473)
Q Consensus        21 ~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~---~~~g~~~~l~~m~   97 (473)
                      ..++.+..++|++++++++|.|...|+.||.|+|||++++ ||++|+++     |+.|.+|.+.   +++||+++|.+|+
T Consensus       159 ~~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~~-----~~~f~lG~g~~~~~i~G~e~~l~gmk  232 (280)
T 1q1c_A          159 GEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRME  232 (280)
T ss_dssp             CEECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ccccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEecC-----CeEEEecCCcccccchhHHHHHhCCC
Confidence            3455555899999999999999867999999999999999 99999973     8999999987   5999999999999


Q ss_pred             CCcEEEEEecCCCCcCCCCCCC-CCCCCCceEEEEEEEeeeeccC
Q psy4385          98 KDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWEAEDI  141 (473)
Q Consensus        98 ~Ge~~~v~i~~~~ayg~~g~~~-~ip~~~~l~~~v~l~~~~~~~~  141 (473)
                      +||+++|.|||+++||..+.++ .|||+++++|+|+|++|...+.
T Consensus       233 ~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~~~~  277 (280)
T 1q1c_A          233 KGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE  277 (280)
T ss_dssp             TTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             CCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeCCCC
Confidence            9999999999999999998766 5999999999999999976543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.81  E-value=6.2e-20  Score=156.40  Aligned_cols=137  Identities=17%  Similarity=0.178  Sum_probs=119.3

Q ss_pred             hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      .....+..+++.|+.+++.|+|++|+..|++||.+.+......   .....|....+|+|+|.|+.++|+|++|+.+|++
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k   82 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   82 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3356788999999999999999999999999998887632211   1123455677999999999999999999999999


Q ss_pred             Hhhh-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         344 AIEL-------EPNNEKAF----FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       344 al~~-------~p~~~ka~----~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      ||++       +|++.++|    |++|.++..+|+|++|+.+|++|++++|++..+...+..+.+.+....
T Consensus        83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~  153 (159)
T 2hr2_A           83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI  153 (159)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred             HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999       99999999    999999999999999999999999999999999888888887764443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.78  E-value=2.2e-18  Score=170.43  Aligned_cols=155  Identities=34%  Similarity=0.557  Sum_probs=134.2

Q ss_pred             CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG-GFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKD  339 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~  339 (473)
                      +.++....+..++.+|+.+++.|+|++|+..|++|+.+++... ....++...+.+....+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            3677888899999999999999999999999999997654310 011122223788899999999999999999999999


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..+..+...+++..++++..|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.73  E-value=2.1e-17  Score=135.66  Aligned_cols=104  Identities=25%  Similarity=0.449  Sum_probs=96.3

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe------------ceeeEEeCCCcccCCcHHHHHHHHhcc
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE------------GTFSFVLGEGSEYDIPENLEKALEKFK  211 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~------------~~~~~~lg~~~~~~~~~gle~al~~m~  211 (473)
                      .+.++.++++++|+|...|..++.|++||.|++ +|++|++            .++.|.+|.+.   +++||+.||..|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~---~i~G~e~~l~gm~   78 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGK---VIRGWDEALLTMS   78 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSS---SCHHHHHHHTTCC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCC---hhHHHHHHHhCCC
Confidence            456799999999999888999999999999998 9999997            47899999887   9999999999999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         212 YKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       212 ~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      .||++.+.+||.++||..+.....||+++.+.|+++|.++
T Consensus        79 ~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           79 KGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             TTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999999998876679999999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.73  E-value=1.6e-17  Score=138.18  Aligned_cols=114  Identities=28%  Similarity=0.339  Sum_probs=101.9

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ..+.+.+++++|+.+|+.|+|++|+..|++||               +++|.++.+|+|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al---------------~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI---------------ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            45678899999999999999999999999999               666777899999999999999999999999999


Q ss_pred             hhhCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         345 IELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       345 l~~~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      ++++|++.       ++|+++|.++..+++|++|+..|++++.++|+ ++....|..
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            99998764       68999999999999999999999999999986 555444443

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.73  E-value=2.9e-17  Score=139.00  Aligned_cols=111  Identities=27%  Similarity=0.481  Sum_probs=102.3

Q ss_pred             eccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcc
Q psy4385         138 AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFK  211 (473)
Q Consensus       138 ~~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~  211 (473)
                      ..++++..|+++.++++++|.|...|..++.|+|||.|++ +|++|++.     |+.|.+|.+.   +++||+.+|..|+
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~---~i~G~e~~l~gm~  102 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQ---VIKAWDIGVATMK  102 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSS---SCHHHHHHHTTCC
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCc---ccHHHHHHHhCCC
Confidence            3567777899999999999999889999999999999999 99999973     6999999887   9999999999999


Q ss_pred             cCcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         212 YKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       212 ~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      +||++.|.|+|.++||..+.. ..||+++.+.|++.|.++.
T Consensus       103 ~Ge~~~v~ipp~~aYG~~g~~-~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          103 KGEICHLLCKPEYAYGSAGSL-PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             BTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHCcCCCCCC-CCcCCCCeEEEEEEEEEec
Confidence            999999999999999999876 4799999999999998874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.4e-17  Score=135.45  Aligned_cols=117  Identities=24%  Similarity=0.319  Sum_probs=109.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|.+|+..|++++               .+.|.+..+++++|.|++++|+|++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            57789999999999999999999999999               556667899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID------PNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~  399 (473)
                      +|+++.+|+++|.++..+|++++|+..|+++++++      |++..++..+..+..++
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999      99999999888887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=7.1e-17  Score=138.43  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=105.9

Q ss_pred             ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385         257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP  336 (473)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  336 (473)
                      .+.......+..+..+..+|..++..|+|++|+..|++++               .++|.++.+|+++|.|+..+|+|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~P~~~~~~~~lg~~~~~~g~~~~   88 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---------------IYDFYNVDYIMGLAAIYQIKEQFQQ   88 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHHccHHH
Confidence            3333445556778899999999999999999999999999               7777789999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      |+.+|+++++++|+++.+|+++|.||..+|++++|+..|+++++++|+.+
T Consensus        89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999999999865

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.69  E-value=2.1e-16  Score=131.06  Aligned_cols=110  Identities=27%  Similarity=0.484  Sum_probs=100.8

Q ss_pred             ccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhccc
Q psy4385         139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKY  212 (473)
Q Consensus       139 ~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~  212 (473)
                      .+++...|+++.++++++|.|...|..++.|++||.|++ +|++|++.     |+.|.+|.+.   +++||+.+|..|+.
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~---~i~G~e~~l~gm~~   87 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQ---VIKAWDIGVATMKK   87 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSS---SCHHHHHHHTTCCT
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCC---ccHHHHHHHhcCCC
Confidence            455666889999999999999878999999999999999 99999973     7999999887   99999999999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         213 KEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       213 gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      ||++.+.+||.++||..+.. ..||+++.+.|++.|.++.
T Consensus        88 Ge~~~v~ip~~~aYG~~g~~-~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           88 GEICHLLCKPEYAYGSAGSL-PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             TCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHcCCCCCCC-CCcCCCCEEEEEEEEEEec
Confidence            99999999999999999876 4799999999999998875

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.69  E-value=1.3e-16  Score=139.84  Aligned_cols=120  Identities=18%  Similarity=0.312  Sum_probs=96.5

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee--CCeEEEec-----eeeEEeCCC-cccCCcHHHHHHHHhcccCcEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC--EGKVFQEG-----TFSFVLGEG-SEYDIPENLEKALEKFKYKEKSR  217 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~--~g~~~~~~-----~~~~~lg~~-~~~~~~~gle~al~~m~~gE~~~  217 (473)
                      +.++.++++++|.| ..|..|+.|+|||.|++  +|++|++.     ++.|.+|.+ .   +++||+.+|..|++||++.
T Consensus        48 ~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~---vi~G~eeaL~gMk~Ge~~~  123 (180)
T 2f4e_A           48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKK---ELAGLAIGVASMKSGERAL  123 (180)
T ss_dssp             ETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCG---GGHHHHHHHTTCCBTCEEE
T ss_pred             CCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCc---hhHHHHHHHhCCCCCCEEE
Confidence            35689999999998 48999999999999998  59999973     789999987 6   9999999999999999999


Q ss_pred             EEecCCCCCCCCCCC-CCCCCCCCCceeeeeecccccccc---ccccCchhHHHhh
Q psy4385         218 LFVQPQHLWSGKGND-KLGVPSNKPATYTITMNNFEKIKD---TWQLNSDEKLEQG  269 (473)
Q Consensus       218 ~~i~~~~~~~~~g~~-~~~ip~~~~~~y~i~L~~~~~~~~---~~~~~~~~~~~~a  269 (473)
                      |.|||.++||..+.. ...||+++.+.|++.|.++....+   .|.|+.++++..|
T Consensus       124 v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          124 VHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            999999999998863 235999999999999999988777   8999999988765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=6.3e-17  Score=138.72  Aligned_cols=112  Identities=12%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..|++.|+|++|+..|++++               .++|.++.+|+++|.|+.++|++++|+.+|++++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYI---------------NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            33444445555555555555555555555               333344445555555555555555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKD-FQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~-~~~al~l~P~~~~~~~~l~~  394 (473)
                      +|+++.+|+++|.+|..+|++++|... +++|++++|+++.++..+..
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            555555555555555555554443333 24555555555544444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=2.6e-16  Score=136.63  Aligned_cols=112  Identities=20%  Similarity=0.242  Sum_probs=104.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|++|+..|++++               .+.|.+..+++++|.||+++|+|++|+.+|++++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL---------------SIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4568899999999999999999999999999               5566678999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      +++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..+
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            99999999999999999999999999999999999999998754433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.67  E-value=2.3e-16  Score=135.15  Aligned_cols=127  Identities=14%  Similarity=0.067  Sum_probs=110.0

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK  353 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k  353 (473)
                      .+|..+..+|++++|+..|++++               ...|.+...++++|.+|+++|+|++|+.+++++++++|+++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~---------------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGST---------------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHS---------------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhc---------------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            37889999999999999999999               567788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         354 AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       354 a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++.+..+++...
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776655444433444443

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.67  E-value=1.1e-16  Score=129.02  Aligned_cols=84  Identities=19%  Similarity=0.361  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+|||++++ ||++|++++  +.|+.|.+|.++++|||+++|.+|++|++++|.||+...||..+.     ++
T Consensus        29 ~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~-----~g  100 (113)
T 1hxv_A           29 KLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS  100 (113)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC-----CC
Confidence            6899999999999999 999999995  579999999999999999999999999999999973333998663     67


Q ss_pred             CceEEEEEEEee
Q psy4385         125 STLVFEVEMISW  136 (473)
Q Consensus       125 ~~l~~~v~l~~~  136 (473)
                      ++++|+|+|+++
T Consensus       101 ~~l~F~V~l~~V  112 (113)
T 1hxv_A          101 KPVTFEVVLKAI  112 (113)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CEEEEEEEEEEE
Confidence            999999999876

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.66  E-value=8.2e-16  Score=128.62  Aligned_cols=110  Identities=22%  Similarity=0.477  Sum_probs=100.2

Q ss_pred             cCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccC
Q psy4385         140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYK  213 (473)
Q Consensus       140 ~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~g  213 (473)
                      ++++..++++.++++++|.|...|..++.|++||.|++ +|++|++     .++.|.+|.+.   +++||+.||..|+.|
T Consensus         7 dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~---vi~G~e~~l~gm~~G   83 (135)
T 1r9h_A            7 DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGN---VIKGWDLGVATMTKG   83 (135)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTS---SCHHHHHHHTTCCBT
T ss_pred             ecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCC---ccHHHHHHHhcCCCC
Confidence            34555788999999999999778999999999999999 9999997     48999999887   999999999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         214 EKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       214 E~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      |++.+.++|.++||..+.+ ..||+++.+.|++.|.++..
T Consensus        84 e~~~v~ip~~~aYG~~g~~-~~Ip~~~~l~f~v~l~~i~~  122 (135)
T 1r9h_A           84 EVAEFTIRSDYGYGDAGSP-PKIPGGATLIFEVELFEWSA  122 (135)
T ss_dssp             CEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHcCCCCCCC-CCcCcCCcEEEEEEEEEeec
Confidence            9999999999999998864 36999999999999999865

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.66  E-value=4.1e-16  Score=132.89  Aligned_cols=106  Identities=19%  Similarity=0.315  Sum_probs=95.9

Q ss_pred             CCCCceEEEEecCCCc-CCCCCCCeEEEEEEeee-CCeEEEe-ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         145 HDGGIRREILEEGASF-STPKDGANVEITLKGEC-EGKVFQE-GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~-~~p~~~~~v~~~~~g~~-~g~~~~~-~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      .+|.+.++++++|+|. ..|..++.|+|||.|++ +|++||+ .+++|.+|.+.   +++||+.+|..|++||++.|.||
T Consensus        41 ~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~---vi~G~eeaL~gMk~Ge~~~v~IP  117 (157)
T 2jwx_A           41 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCD---VIQALDLSVPLMDVGETAMVTAD  117 (157)
T ss_dssp             SSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTS---SCHHHHHHTTTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCC---hhHHHHHHHcCCCCCCEEEEEEC
Confidence            5666789999999983 58999999999999998 9999998 58999999887   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      |.++||..+.....||+++.+.|+++|.++..
T Consensus       118 ~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~  149 (157)
T 2jwx_A          118 SKYCYGPQGSRSPYIPPHAALCLEVTLKTAVD  149 (157)
T ss_dssp             GGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEE
T ss_pred             chhcCCcccccCCCcCCCCeEEEEEEEEEEEc
Confidence            99999998844456999999999999988765

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.65  E-value=4.5e-16  Score=133.66  Aligned_cols=85  Identities=25%  Similarity=0.443  Sum_probs=78.6

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+|||++++.||++|++|+..+.|+.|.+|.++++|||+++|.+|++|++++|.|||++|||+        .+
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~--------~~   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGV--------PS   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCC--------CC
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC--------CC
Confidence            5899999999999999999999999876689999999999999999999999999999999999999999        56


Q ss_pred             CceEEEEEEEeee
Q psy4385         125 STLVFEVEMISWE  137 (473)
Q Consensus       125 ~~l~~~v~l~~~~  137 (473)
                      ..++..|....|.
T Consensus        96 ~~lv~~vp~~~f~  108 (169)
T 4dt4_A           96 PDLIQYFSRREFM  108 (169)
T ss_dssp             GGGEEEEEGGGGT
T ss_pred             hHHEEEeCHHHCC
Confidence            7888888877765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.65  E-value=8.3e-16  Score=130.16  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=109.1

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+..+|..++..|+|.+|+..|++++               ..+|.+..+++++|.|+..+|+|++|+.+|+++
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALC---------------MLDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH---------------HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34567788999999999999999999999999               667778899999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +.++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...+.
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998876665555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.65  E-value=5.3e-16  Score=132.60  Aligned_cols=118  Identities=12%  Similarity=0.065  Sum_probs=106.4

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+..+|..++..|+|.+|+..|++++               .++|.+..+++++|.|+..+|+|++|+..|+++
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC---------------VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34567789999999999999999999999999               666778899999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +.++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+..
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  134 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS  134 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999998766544444443

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.63  E-value=2.2e-15  Score=121.07  Aligned_cols=100  Identities=19%  Similarity=0.469  Sum_probs=91.2

Q ss_pred             CceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         148 GIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       148 ~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      ++.++++++|+|...|..++.|++||.+++ +|++|++.     +++|.+|.+.   +++||+.||..|+.||++.+.+|
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~---~i~g~~~~l~gm~~Ge~~~~~ip   77 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQE---VIRGWEEGVAQMSVGQRAKLTIS   77 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCC---SCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCC---hHHHHHHHHhCCCCCCEEEEEEC
Confidence            467899999999767999999999999999 99999973     7899999887   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      |.++||..+... .||+++.+.|+++|.++
T Consensus        78 ~~~ayG~~~~~~-~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           78 PDYAYGATGHPG-IIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGGTTTTTCBTT-TBCTTCCEEEEEEEEEE
T ss_pred             HHHccCCCCCCC-CcCCCCeEEEEEEEEEe
Confidence            999999987654 49999999999998765

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.63  E-value=4e-16  Score=133.23  Aligned_cols=79  Identities=16%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             CCCceEEEEecCCCcCC-CCCCCeEEEEEEeee---CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEE
Q psy4385         146 DGGIRREILEEGASFST-PKDGANVEITLKGEC---EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKS  216 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~-p~~~~~v~~~~~g~~---~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~  216 (473)
                      +.++.++++++|+|... +..|++|+|||.|++   +|++|||+     |++|.+|.+.   +++||+.+|.+|++||++
T Consensus         9 ~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~---vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            9 EDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKF---KLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             TTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSC---SCSHHHHHHTTCCTTCEE
T ss_pred             CCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCC---ccHHHHHHHhcCccCceE
Confidence            56799999999999543 368999999999998   49999983     8999999998   999999999999999999


Q ss_pred             EEEecCCCCCC
Q psy4385         217 RLFVQPQHLWS  227 (473)
Q Consensus       217 ~~~i~~~~~~~  227 (473)
                      .|+|||.++||
T Consensus        86 ~~~ipp~laYG   96 (165)
T 2lkn_A           86 QFLCDIKHVVL   96 (165)
T ss_dssp             EEECCHHHHSS
T ss_pred             EEEECHHHhcC
Confidence            99999999998

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=1.1e-14  Score=131.85  Aligned_cols=119  Identities=15%  Similarity=0.077  Sum_probs=110.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHH----------------HHHHHHHc
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN----------------AAMCLLKL  331 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~~kl  331 (473)
                      .+..+...|..++..|+|++|+..|++++               .++|.++.++++                +|.++.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI---------------ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN   67 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC
Confidence            35677889999999999999999999999               677778888888                99999999


Q ss_pred             CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      |+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++.....
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999999998765543

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.62  E-value=3.5e-15  Score=121.04  Aligned_cols=102  Identities=21%  Similarity=0.414  Sum_probs=92.4

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++.++++++|.|...|..++.|++||.|++ +|++|++.     ++.|.+|.+.   +++||+.+|..|+.||++.+.
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~---~i~g~e~~l~gm~~Ge~~~v~   81 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQ---VIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSS---SCHHHHHHGGGCCTTCEEEEE
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCC---ccHHHHHHHhCCCCCCEEEEE
Confidence            35688999999999666999999999999998 99999973     7899999887   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      ++|.++||..+... .||+++.+.|+++|.++
T Consensus        82 ip~~~ayG~~~~~~-~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           82 IPGPYAYGPRGFPG-LIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             ECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEE
T ss_pred             ECHHHCcCCCCCCC-CcCCCCeEEEEEEEEEe
Confidence            99999999987654 49999999999998765

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.61  E-value=4.7e-15  Score=123.22  Aligned_cols=105  Identities=25%  Similarity=0.504  Sum_probs=94.8

Q ss_pred             CCCCceEEEEecC-CC-cCCCCCCCeEEEEEEeee--CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcE
Q psy4385         145 HDGGIRREILEEG-AS-FSTPKDGANVEITLKGEC--EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEK  215 (473)
Q Consensus       145 ~d~~i~k~i~~~g-~g-~~~p~~~~~v~~~~~g~~--~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~  215 (473)
                      .++.+.++++++| .| ...|..++.|++||.|++  +|++|++.     +++|.+|.+.   +++||+.+|..|+.||+
T Consensus        14 ~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~---~i~g~e~~l~gm~~Ge~   90 (129)
T 2vn1_A           14 ADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGE---VIKGWDICVSSMRKNEK   90 (129)
T ss_dssp             TTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSS---SCHHHHHHHTTCCTTCE
T ss_pred             CCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCC---cCHHHHHHHhCCCCCCE
Confidence            6788889999988 66 589999999999999998  89999973     7899999887   99999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         216 SRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       216 ~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      +.|.++|.++||..+... .||+++.+.|++.|.++..
T Consensus        91 ~~v~ip~~~aYG~~~~~~-~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           91 CLVRIESMYGYGDEGCGE-SIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHcCCCCCCCC-CcCCCCeEEEEEEEEEEec
Confidence            999999999999987653 4999999999999988754

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.61  E-value=4.9e-15  Score=121.07  Aligned_cols=104  Identities=19%  Similarity=0.320  Sum_probs=94.6

Q ss_pred             CCCCceEEEEecCCCc-CCCCCCCeEEEEEEeee-CCeEEEe-ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         145 HDGGIRREILEEGASF-STPKDGANVEITLKGEC-EGKVFQE-GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~-~~p~~~~~v~~~~~g~~-~g~~~~~-~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      .++.+.++++++|+|. ..|..++.|++||.+++ +|++|++ .++.|.+|.+.   +++||+.+|..|+.||++.+.+|
T Consensus        11 ~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~---~i~g~e~~l~gm~~Ge~~~~~ip   87 (118)
T 2awg_A           11 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCD---VIQALDLSVPLMDVGETAMVTAD   87 (118)
T ss_dssp             SSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSC---SCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCC---hhHHHHHHHhCCCCCCEEEEEEC
Confidence            6778999999999984 48999999999999998 9999998 48999999887   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      |.++||..+.. ..||+++.+.|++.|.++.
T Consensus        88 ~~~ayG~~~~~-~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           88 SKYCYGPQGRS-PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             hHHccCCCCCC-CccCCCCeEEEEEEEEEec
Confidence            99999988765 3599999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.8e-15  Score=126.54  Aligned_cols=119  Identities=27%  Similarity=0.415  Sum_probs=108.7

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++++               .+.|.+..+++++|.|++.+++|+.|+.++++++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHH---------------hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999               555666889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN-----NKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~-----~~~~~~~l~~~~~~~~~  401 (473)
                      +|+++.+++++|.+|..+|++++|+..|++++.++|+     +..+...+..+..+...
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998     77788888777665533

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=3.3e-15  Score=159.44  Aligned_cols=121  Identities=22%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +.+.++.++|+.+.++|+|++|+..|++|+               +++|.+..+|+|+|.++.++|++++|+.+|++|++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl---------------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKAL---------------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456666666666666666666666666666               33334445555555555555555555555555555


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      ++|+++.+|+++|.+|..+|++++|+..|++|++++|++..++..|+.++..+++.
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~  127 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI  127 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            55555555555555555555555555555555555555555555555555444433

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.3e-15  Score=125.92  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=99.2

Q ss_pred             CCCCceEEEEecCCCc-CCCCCCCeEEEEEEeee-CCeEEEe-ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         145 HDGGIRREILEEGASF-STPKDGANVEITLKGEC-EGKVFQE-GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~-~~p~~~~~v~~~~~g~~-~g~~~~~-~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      .++.+.++++++|.|. ..|..++.|++||.|++ +|++|++ .++.|.+|.+.   +++||+.+|..|+.||++.+.+|
T Consensus        15 ~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~---~i~G~e~~L~gm~~Ge~~~v~ip   91 (135)
T 2d9f_A           15 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCD---VIQALDLSVPLMDVGETAMVTAD   91 (135)
T ss_dssp             SSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCC---SCTTTTTTGGGSCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCC---hhHHHHHHHhCCCCCCEEEEEEC
Confidence            6777999999999984 58999999999999998 9999998 48999999887   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeecccccccccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTW  258 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~  258 (473)
                      |.++||..+.....||+++.+.|++.|.++....+.-
T Consensus        92 ~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e  128 (135)
T 2d9f_A           92 SKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLE  128 (135)
T ss_dssp             HHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSS
T ss_pred             hhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchh
Confidence            9999999884445799999999999999987754443

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.60  E-value=2.6e-15  Score=135.27  Aligned_cols=70  Identities=33%  Similarity=0.527  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCC-------------CccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCc
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAY  112 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~-------------~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ay  112 (473)
                      ++.||.|+|||++++ ||++||+|+..             +.|+.|.+|.++++|||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy4385         113 GKQG  116 (473)
Q Consensus       113 g~~g  116 (473)
                      |+.+
T Consensus        81 Ge~~   84 (231)
T 3prb_A           81 GKRD   84 (231)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9865

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.60  E-value=1.1e-14  Score=120.82  Aligned_cols=98  Identities=19%  Similarity=0.464  Sum_probs=88.4

Q ss_pred             eEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCC
Q psy4385         150 RREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQ  223 (473)
Q Consensus       150 ~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~  223 (473)
                      .|+++++|+|...|..++.|+++|.|++ +|++|++     .++.|.+|.+.   +++||+.+|..|+.||++.+.++|.
T Consensus        27 ~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~---vi~G~e~aL~gm~~Ge~~~v~ip~~  103 (130)
T 2lgo_A           27 EKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGE---VIKGWDQGVATMTLGEKALFTIPYQ  103 (130)
T ss_dssp             CEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTT---SCHHHHHHHHHSCTTEEEEEEECTT
T ss_pred             EEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCC---ccHHHHHHHhCCCCCCEEEEEECcH
Confidence            3459999999766999999999999998 9999997     37899999887   9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         224 HLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       224 ~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      ++||..+... .||+++.+.|+++|.++
T Consensus       104 ~aYG~~~~~~-~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          104 LAYGERGYPP-VIPPKATLVFEVELLAV  130 (130)
T ss_dssp             TSTTTTCCST-TSCSSCCEEEEEEEEEC
T ss_pred             HHCCCCCCCC-CcCCCCeEEEEEEEEEC
Confidence            9999988754 49999999999998753

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.60  E-value=1.8e-15  Score=128.72  Aligned_cols=83  Identities=29%  Similarity=0.470  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCC-------------CccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCc
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTR-------------GEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAY  112 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~-------------~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ay  112 (473)
                      ++.||.|+|||++++ ||++||+|+..             +.|+.|.+|.++++|||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999752             3699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         113 GKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       113 g~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |+        .+..++..+....|.
T Consensus        81 G~--------~~~~~V~~v~~~~f~   97 (157)
T 3pr9_A           81 GK--------RDPSKIKLIPLSEFT   97 (157)
T ss_dssp             CC--------CCGGGEEEEEHHHHH
T ss_pred             CC--------CChHhEEEcCHHHCC
Confidence            99        456777777776665

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.59  E-value=4.6e-15  Score=123.85  Aligned_cols=103  Identities=21%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee--CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC--EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSR  217 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~--~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~  217 (473)
                      .++++.++++++|.|. .|..++.|++||.|++  +|++|++.     ++.|.+|.+.   +++||+.||..|++||++.
T Consensus        24 ~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~---~i~G~e~aL~gm~~Ge~~~   99 (134)
T 3b7x_A           24 GDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDI---TLWGMELGLLSMRRGELAR   99 (134)
T ss_dssp             SSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCC---CCHHHHHHHHTCEETCEEE
T ss_pred             CCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcc---hhHHHHHHHhCCCCCCEEE
Confidence            6788999999999984 6778999999999998  59999873     6899999987   9999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         218 LFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       218 ~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      |.+||.++||..+... .||+++.+.|+++|.++.
T Consensus       100 v~ip~~~aYG~~~~~~-~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          100 FLFKPNYAYGTLGCPP-LIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             EEECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHCcCCCCCCC-CcCcCCeEEEEEEEEEEe
Confidence            9999999999988754 499999999999998764

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.59  E-value=1.6e-14  Score=124.50  Aligned_cols=112  Identities=16%  Similarity=0.294  Sum_probs=96.4

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++.++++++|.|...|..++.|+|||.|++ +|++|++.     |++|.+|  .   +++||+.+|..|+.|++..|.
T Consensus        36 ~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~---vI~G~eeaL~gMk~Ge~~~~~  110 (167)
T 1jvw_A           36 PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--E---VIKGWTEALQLMREGDRWRLF  110 (167)
T ss_dssp             TTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--G---SCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--c---hhHHHHHHHcCCCCCCEEEEE
Confidence            45789999999998555999999999999998 99999983     7888885  3   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccccccccccccCchhH
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEK  265 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~~~~~~~~~~~  265 (473)
                      |||.++||..+.. ..||+++.+.|++.|.++.+.  .+.++.++.
T Consensus       111 Ip~~laYG~~g~~-~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~  153 (167)
T 1jvw_A          111 IPYDLAYGVTGGG-GMIPPYSPLEFDVELISIKDG--GKGRTAEEV  153 (167)
T ss_dssp             ECGGGTTTTTCSS-SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHH
T ss_pred             ECchhhCCCCCCC-CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHH
Confidence            9999999998864 359999999999999998753  344555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.58  E-value=1.9e-15  Score=161.41  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=125.8

Q ss_pred             ccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         251 FEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK  330 (473)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k  330 (473)
                      ++++...+....+..+..+..+.++|+.+.+.|++++|+..|++|+               +++|.++.+|+|+|.++..
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---------------~l~P~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---------------RISPTFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHH
Confidence            4444444544555566778899999999999999999999999999               6777789999999999999


Q ss_pred             cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       331 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      +|++++|+..|++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|++..++..|+.++..+.+..++.
T Consensus        90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988776655443

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.58  E-value=9.7e-15  Score=124.01  Aligned_cols=83  Identities=25%  Similarity=0.336  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEEEEEEec-CCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLL-DGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPP  123 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~  123 (473)
                      .++.||.|++||++++. ||++|++|+. +.|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+        .
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~--------~   76 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGV--------Y   76 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCS--------S
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCC--------C
Confidence            57899999999999998 9999999975 369999999999999999999999999999999999999998        4


Q ss_pred             CCceEEEEEEEee
Q psy4385         124 DSTLVFEVEMISW  136 (473)
Q Consensus       124 ~~~l~~~v~l~~~  136 (473)
                      +..+++.|....|
T Consensus        77 ~~~~v~~v~~~~f   89 (151)
T 2kr7_A           77 ESSYLQEVPRDQF   89 (151)
T ss_dssp             CSCEEEEEEGGGG
T ss_pred             CcceEEEEcHHHc
Confidence            5678888888777

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.58  E-value=4.2e-15  Score=130.96  Aligned_cols=83  Identities=20%  Similarity=0.291  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS  125 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~  125 (473)
                      ++.||.|+|||++++.||++|++|+.. .|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+        .+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe--------~~~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ--------YDE   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSC--------CCT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCC--------CCh
Confidence            678999999999999899999999754 69999999999999999999999999999999999999998        456


Q ss_pred             ceEEEEEEEeee
Q psy4385         126 TLVFEVEMISWE  137 (473)
Q Consensus       126 ~l~~~v~l~~~~  137 (473)
                      .+++.|.+..|.
T Consensus        74 ~lV~~vp~~~f~   85 (196)
T 2kfw_A           74 NLVQRVPKDVFM   85 (196)
T ss_dssp             TTCEEECGGGCC
T ss_pred             hhEEEEEHHHCC
Confidence            677777776664

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=119.49  Aligned_cols=104  Identities=17%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             CCCCceEEEEecCCC-cCCCCCCCeEEEEEEeee--CCeEEEec-------eeeEEeCCCcccCCcHHHHHHHHhcccCc
Q psy4385         145 HDGGIRREILEEGAS-FSTPKDGANVEITLKGEC--EGKVFQEG-------TFSFVLGEGSEYDIPENLEKALEKFKYKE  214 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g-~~~p~~~~~v~~~~~g~~--~g~~~~~~-------~~~~~lg~~~~~~~~~gle~al~~m~~gE  214 (473)
                      .+.++.++++++|.+ ...|..++.|++||.|++  +|++|++.       ++.|.+|.+.   +++||+.+|..|+.||
T Consensus        10 ~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~---~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A           10 PEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILE---ALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             CCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCS---SCHHHHHHSTTCCTTC
T ss_pred             CCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCC---hhHHHHHHHhCCCCCC
Confidence            456789999999973 589999999999999998  89999973       6899999887   9999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         215 KSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       215 ~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      ++.+.++|.++||..+..  .||+++.+.|+++|.++.+
T Consensus        87 ~~~~~ip~~~aYG~~g~~--~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG--KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT--TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCCC--CCCCCCeEEEEEEEEEEEc
Confidence            999999999999999865  7999999999999998765

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.58  E-value=1.4e-14  Score=120.53  Aligned_cols=101  Identities=24%  Similarity=0.503  Sum_probs=92.1

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      .+.++.++++++|.| ..|..++.|++||.|++ +|++|++.     ++.|.+|.+.   +++||+.+|..|+.||++.|
T Consensus        26 ~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~---vi~G~eeaL~gmk~Ge~~~v  101 (133)
T 2y78_A           26 TESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGM---VIKGWDEGVQGMKVGGVRRL  101 (133)
T ss_dssp             CTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSS---SCHHHHHHSTTCBTTCEEEE
T ss_pred             CCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCC---hhHHHHHHHcCCCCCCEEEE
Confidence            456789999999998 68999999999999999 99999973     7899999887   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeecc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNN  250 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~  250 (473)
                      .++|.++||..+... .|||++.+.|+++|.+
T Consensus       102 ~ip~~~aYG~~~~~~-~Ipp~~~l~f~VeL~~  132 (133)
T 2y78_A          102 TIPPQLGYGARGAGG-VIPPNATLVFEVELLD  132 (133)
T ss_dssp             EECGGGTTTTTCBTT-TBCTTCCEEEEEEEEE
T ss_pred             EECcHHhCCCCCCCC-CCCCCCeEEEEEEEEE
Confidence            999999999988653 5999999999999865

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.57  E-value=9.1e-16  Score=130.38  Aligned_cols=84  Identities=31%  Similarity=0.564  Sum_probs=76.1

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCC-------------CCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCc
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKT-------------RGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAY  112 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~-------------~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ay  112 (473)
                      ++.||.|++||++++.||++|++|+.             ...|+.|.+|.++++|||+++|.+|++|++++|.|||+.||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            67899999999999999999999973             33699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         113 GKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       113 g~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |+        .+..+++.|.+..|.
T Consensus        82 G~--------~~~~~v~~v~~~~f~   98 (151)
T 1ix5_A           82 GN--------RNEMLIQKIPRDAFK   98 (151)
T ss_dssp             CS--------CCSTTBCCEETHHHH
T ss_pred             CC--------CCccEEEEEEHHHcC
Confidence            98        456788888888775

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.57  E-value=2.9e-14  Score=123.12  Aligned_cols=83  Identities=20%  Similarity=0.291  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS  125 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~  125 (473)
                      ++.||.|+|+|++++.||++|++|+.. .|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+        .+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~--------~~~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ--------YDE   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCC--------CCT
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCC--------CCh
Confidence            678999999999999899999999753 69999999999999999999999999999999999999998        456


Q ss_pred             ceEEEEEEEeee
Q psy4385         126 TLVFEVEMISWE  137 (473)
Q Consensus       126 ~l~~~v~l~~~~  137 (473)
                      .+++.|....|.
T Consensus        74 ~~v~~v~~~~f~   85 (171)
T 2k8i_A           74 NLVQRVPKDVFM   85 (171)
T ss_dssp             TSEEEEEGGGGT
T ss_pred             hhEEEeeHHHCC
Confidence            677777777664

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.56  E-value=1.3e-14  Score=129.81  Aligned_cols=100  Identities=22%  Similarity=0.373  Sum_probs=91.4

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe--ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecC
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE--GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQP  222 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~--~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~  222 (473)
                      +.++.++++++|+| ..|..+++|+|||.|++ +|++||+  .|++|.+|  .   +++||+.+|..|++|++..+.|||
T Consensus       116 ~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~---vI~G~eeaL~gMk~Gek~~v~IPp  189 (219)
T 3oe2_A          116 ADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--S---VISGWTSALQNMPTGAKWRLVIPS  189 (219)
T ss_dssp             GGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--G---SCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--c---hhHHHHHHHhCCCCCCEEEEEECc
Confidence            46789999999998 68999999999999998 9999997  48899998  3   999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         223 QHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       223 ~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      .++||..+... .|||++.+.|+++|.++.
T Consensus       190 ~lAYG~~g~~~-~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          190 DQAYGAEGAGD-LIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGTTTTTCBTT-TBCTTCCEEEEEEEEEEE
T ss_pred             hhcCCCCCCCC-CCCCCCeEEEEEEEEEEe
Confidence            99999998753 599999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=3.4e-14  Score=114.48  Aligned_cols=114  Identities=23%  Similarity=0.251  Sum_probs=106.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+...|..++..|+|.+|+..|++++               ...|....+++++|.++..++++++|+..+++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAI---------------KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            46788899999999999999999999999               444556789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      +|.++.+++++|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988887765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.55  E-value=5.9e-14  Score=115.20  Aligned_cols=124  Identities=32%  Similarity=0.417  Sum_probs=112.2

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      .......+..+..+|..++..|+|..|+..|++++               ...|....++.++|.++..++++++|+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI---------------ELNPANAVYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHhhchHHHHHHH
Confidence            34456678899999999999999999999999999               444556789999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      .+++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988888876553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=1.2e-13  Score=118.85  Aligned_cols=120  Identities=26%  Similarity=0.407  Sum_probs=110.3

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      .......+..+..+|..++..|+|..|+..|.+++               ...|....+++++|.++..+++|++|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35567788999999999999999999999999999               445556889999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      .+++.++|.++.+++++|.++..+|++++|+..|++++.++|++..++..+..+.
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887666663

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=1.7e-14  Score=131.44  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|++++|+..|++++..               +|.++.+++++|.++.++|++++|+..++++++++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~   69 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE---------------NPQDPEALYWLARTQLKLGLVNPALENGKTLVART   69 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            445666677777777777777777777733               33345555555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDL-----------NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~l-----------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      |+++.+++++|.++..+           |++++|+..|+++++++|++..++..++.+...+++.
T Consensus        70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~  134 (217)
T 2pl2_A           70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER  134 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence            55555555555555555           5555555555555555555555555555555444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=1.2e-14  Score=144.06  Aligned_cols=131  Identities=8%  Similarity=-0.026  Sum_probs=110.5

Q ss_pred             cccccccCchhHHHhhHHHHhhcchhhhccc-HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4385         254 IKDTWQLNSDEKLEQGKLLKERGTTYFKQDK-FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK  332 (473)
Q Consensus       254 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~  332 (473)
                      +...+.......+..+..+..+|..+...|+ |++|+..|++++               .++|.+..+|+++|.++.++|
T Consensus       116 Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al---------------~l~P~~~~a~~~~g~~~~~~g  180 (382)
T 2h6f_A          116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---------------EEQPKNYQVWHHRRVLVEWLR  180 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcc
Confidence            3333333444555667788888888888886 888888888888               667778889999999999999


Q ss_pred             ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         333 QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       333 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +|++|+.+|+++|+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus       181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999998887773

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=2.2e-14  Score=130.66  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=122.7

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----------
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----------  331 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----------  331 (473)
                      ....+..+..+..+|..++..|++++|+..|++++               .++|.+..+++++|.++..+          
T Consensus        32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLV---------------ARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            33444567789999999999999999999999999               66777899999999999999          


Q ss_pred             -CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         332 -KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY  410 (473)
Q Consensus       332 -~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  410 (473)
                       |++++|+..++++++++|+++.+++++|.+|..+|++++|+..|+++++++ ++..++..++.+...+++..+. ...|
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A-~~~~  174 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA-LAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH-HHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH-HHHH
Confidence             999999999999999999999999999999999999999999999999999 9999999999999888766655 3456


Q ss_pred             HHHhhh
Q psy4385         411 ANMFDK  416 (473)
Q Consensus       411 ~~~f~~  416 (473)
                      ++++..
T Consensus       175 ~~al~~  180 (217)
T 2pl2_A          175 AKALEQ  180 (217)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.53  E-value=1.8e-14  Score=118.51  Aligned_cols=102  Identities=11%  Similarity=0.072  Sum_probs=90.8

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+..+|..++..|++.+|+..|++++               ..+|.+..+++++|.++..+|++++|+..++++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVC---------------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999               667778999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      ++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998754

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.53  E-value=5.7e-14  Score=126.01  Aligned_cols=101  Identities=24%  Similarity=0.502  Sum_probs=92.5

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      .+.++.++++++|+| ..|..++.|++||.|++ +|++|++.     |+.|.+|.+.   +++||+.||..|+.||++.+
T Consensus       102 ~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~---vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A          102 TESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGM---VIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSS---SCHHHHHHHTTCBTTCEEEE
T ss_pred             CCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCc---cchhHHHHHhCCCCCCEEEE
Confidence            456799999999998 55999999999999999 99999974     7999999987   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeecc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNN  250 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~  250 (473)
                      .+||.++||..+... .||+++.+.|+++|.+
T Consensus       178 ~Ipp~~aYG~~g~~~-~IP~~s~LvF~VeL~~  208 (209)
T 3uf8_A          178 TIPPQLGYGARGAAG-VIPPNATLVFEVELLD  208 (209)
T ss_dssp             EECGGGTTTTTCBTT-TBCTTCCEEEEEEEEE
T ss_pred             EECcHHhCCCCCCCC-CcCCCCeEEEEEEEEE
Confidence            999999999998764 4999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-14  Score=117.06  Aligned_cols=118  Identities=24%  Similarity=0.357  Sum_probs=108.3

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .....+..+|..++..|+|.+|+..|++++...               |.+..+++++|.++..++++++|+..+++++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~   78 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ   78 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            357789999999999999999999999999543               34477899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++|.+..+++++|.++..+|++++|+..|++++.++|++..++..++.+...+
T Consensus        79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998888887543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=9.7e-14  Score=117.02  Aligned_cols=118  Identities=27%  Similarity=0.385  Sum_probs=106.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|..++..|+|.+|+..|++++...+.            .+....+++++|.+++.+++|++|+..|++++.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   93 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIE   93 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34678899999999999999999999999965442            123478999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ++|+++.+++++|.+|..+|++++|+..|++++.++|++..++..+..+.
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888777664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=6.1e-14  Score=123.59  Aligned_cols=145  Identities=16%  Similarity=0.167  Sum_probs=97.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC------------Ch-------hHHHHHHHHHHHHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF------------EG-------EQETERKKTLTACHLNAAMCLL  329 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~  329 (473)
                      +..+.++|+.++..|+|++|+..|++++++.+.....            ..       .......+....++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3445555666666666666666666665433321100            00       0001334445667777777788


Q ss_pred             HcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         330 KLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQV  409 (473)
Q Consensus       330 kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  409 (473)
                      ..++++.|+..+.+++.++|.+..+++.+|.+|..+|+|++|+..|+++++++|++..++..++.+...+++..++. ..
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KY  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HH
Confidence            88888888888888888888888888888888888888888888888888888888888888888887776655443 34


Q ss_pred             HHHHh
Q psy4385         410 YANMF  414 (473)
Q Consensus       410 ~~~~f  414 (473)
                      |++.+
T Consensus       164 ~~~al  168 (184)
T 3vtx_A          164 FKKAL  168 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=2.8e-14  Score=121.20  Aligned_cols=103  Identities=21%  Similarity=0.271  Sum_probs=93.5

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChh----------HHHHHHHHHhhhCC
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAK----------PAKDQCDKAIELEP  349 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~----------~A~~~~~~al~~~p  349 (473)
                      -+.+.|++|+..|++++               +++|.++.+|+|+|.+++.+++++          +|+..|++||+++|
T Consensus        13 ~r~~~feeA~~~~~~Ai---------------~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTY---------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhHHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence            35678999999999999               778888999999999999998764          99999999999999


Q ss_pred             CCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLN-----------EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ++..+||++|.+|..+|           +|++|+.+|++|++++|++...+..+..+.+
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            99999999999999885           8999999999999999999887777666543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=4.1e-14  Score=140.13  Aligned_cols=134  Identities=16%  Similarity=0.091  Sum_probs=120.7

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ-AKPAKDQCDK  343 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-~~~A~~~~~~  343 (473)
                      .+..+..+..+|..+...|+|++|+..|+++|               .++|.+..+|+++|.++..+|+ +++|+.+|++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al---------------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAI---------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHH---------------HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            34568889999999999999999999999999               7778889999999999999997 9999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +|+++|++..+|+++|.++..+|++++|+.+|++|++++|++..++..++.+...+++..++ ...|.+++
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA-l~~~~~al  227 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE-LQYVDQLL  227 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887665433 33444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=1.4e-13  Score=125.73  Aligned_cols=122  Identities=20%  Similarity=0.238  Sum_probs=106.5

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+...|..++..|+|.+|+..|++++...+.              ....+++++|.|+..+|+|++|+.+|+++++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            367889999999999999999999999954430              345788899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-------AAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~-------~~~~~l~~~~~~~~~~~~  404 (473)
                      |+++.+++++|.+|..+|++++|+..|+++++++|++.       .++..++.+...+++..+
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  135 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK  135 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence            99999999999999999999999999999999999999       446666666655544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.50  E-value=3e-14  Score=121.99  Aligned_cols=105  Identities=9%  Similarity=0.003  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .++|.+..+++++|.+++++|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.++..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            66788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      ++.++..+++..++. ..|++.....
T Consensus       110 lg~~~~~lg~~~eA~-~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAK-ECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHhC
Confidence            999999887766554 4566665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=2.9e-13  Score=119.22  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=100.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      ....|+..|..-.....|.+|+..+..        ..+++|.++.++.++|.++.++|++++|+..+.+++..+|++..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~--------al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   75 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKK--------VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA   75 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHH--------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence            345677777777777788888866542        335667778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++.+|.++...++++.|...+.+++.++|++..++..++.+...+++..++. ..|+++..
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~~l~  135 (184)
T 3vtx_A           76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI-EAYEKTIS  135 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHH-HHHHHHHH
Confidence            8888888888888888888888888888888888888888877776555443 34444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.50  E-value=1.4e-13  Score=113.07  Aligned_cols=118  Identities=27%  Similarity=0.352  Sum_probs=106.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|..|+..|.+++.               ..|....+++++|.++..+++|++|+.++.+++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE---------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            467888999999999999999999999994               44556789999999999999999999999999999


Q ss_pred             CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         348 EPNN-------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       348 ~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      +|.+       ..+++++|.+|..+|++++|+..|++++.+.| +..+...+..+...+++
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            9887       89999999999999999999999999999999 58888888888766543

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.50  E-value=7.1e-14  Score=115.95  Aligned_cols=102  Identities=17%  Similarity=0.273  Sum_probs=91.0

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHh------cccC
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEK------FKYK  213 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~------m~~g  213 (473)
                      +.++.++++++|.| ..|..++.|++||.|++ +|++|++     .++.|.+|.+.   +++||+.+|..      |+.|
T Consensus        11 ~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~---~i~G~~~~L~G~~~~~~m~~G   86 (129)
T 1u79_A           11 PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGE---VIKGWDQGILGSDGIPPMLTG   86 (129)
T ss_dssp             TTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSS---SCHHHHHHHHCBTTBCCCBTT
T ss_pred             CCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCC---ccHHHHHHhcccccccccCCC
Confidence            45689999999998 67999999999999998 9999997     37899999887   99999999988      9999


Q ss_pred             cEEEEEecCCCCCCCCCCC----CCCCCCCCCceeeeeeccc
Q psy4385         214 EKSRLFVQPQHLWSGKGND----KLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       214 E~~~~~i~~~~~~~~~g~~----~~~ip~~~~~~y~i~L~~~  251 (473)
                      |++.+.++|.++||..+..    ...||+++.+.|+++|.++
T Consensus        87 e~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           87 GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            9999999999999988753    2359999999999998764

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.49  E-value=1.5e-13  Score=122.98  Aligned_cols=101  Identities=15%  Similarity=0.318  Sum_probs=90.8

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++..+++++|+| ..|..++.|+|||.|++ +|++||+.     |++|.+|  .   +++||+.+|..|+.|++..|.
T Consensus       105 ~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~---vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          105 PSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--Q---VIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             TTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--G---SCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--c---hhhHHHHHHcCCCCCCEEEEE
Confidence            45789999999998 78999999999999998 99999973     7889885  3   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      |||.++||..+.. ..||+++.+.|+++|.++.+
T Consensus       179 IP~~laYG~~g~~-~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          179 VPSGLAYGPRSVG-GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             ECGGGTTTTCCCS-SSCCTTCCEEEEEEEEEEEC
T ss_pred             ECchhccCccCCC-CCCCCCCeEEEEEEEEEEEc
Confidence            9999999998863 36999999999999988754

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.49  E-value=3e-14  Score=121.51  Aligned_cols=78  Identities=21%  Similarity=0.303  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS  125 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~  125 (473)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.++++|||+++|.+|++|++++|.|||+.|||+        .+.
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~--------~~~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGP--------HDP   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCC--------CCG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCC--------CCc
Confidence            67899999999999 8999999996     899999999999999999999999999999999999998        567


Q ss_pred             ceEEEEEEEeee
Q psy4385         126 TLVFEVEMISWE  137 (473)
Q Consensus       126 ~l~~~v~l~~~~  137 (473)
                      .+++.|.+..|.
T Consensus        69 ~lv~~v~~~~f~   80 (158)
T 3cgm_A           69 EGVQVVPLSAFP   80 (158)
T ss_dssp             GGEEEEEGGGSC
T ss_pred             ceEEEEEHHHCC
Confidence            889999888875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.49  E-value=1.7e-13  Score=125.13  Aligned_cols=120  Identities=13%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ....+..+|..++..|+|++|+..|++++               ..+|....++.++|.++..+|++++|+..+++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           41 DSVTAYNCGVCADNIKKYKEAADYFDIAI---------------KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcHHHHHHHHHHHH---------------HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34577779999999999999999999999               556668899999999999999999999999999999


Q ss_pred             CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       348 ~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~  402 (473)
                      +|++.       .+|+++|.++..+|++++|+..|+++++++|+  +..++..++.+...++..
T Consensus       106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999       77999999999999999999999999999999  999999999998766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.48  E-value=1.6e-13  Score=113.14  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+..+|..++..|+|.+|+..|++++...+..            +....+++++|.|++++|+|++|+..+++++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            46778999999999999999999999655431            122378999999999999999999999999999999


Q ss_pred             C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         351 N---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       351 ~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +   +.+++++|.+|..+|++++|+..|++++...|++..+...+..+..
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            9   8999999999999999999999999999999999887766655543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.48  E-value=2.6e-13  Score=112.40  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .++|..+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++.+...+++..++. ..|++.+.
T Consensus        87 lg~~~~~~~~~~~A~-~~~~~al~  109 (126)
T 4gco_A           87 KAACLVAMREWSKAQ-RAYEDALQ  109 (126)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHH-HHHHHHHH
Confidence            999999887766544 35555554

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.48  E-value=2.1e-13  Score=122.97  Aligned_cols=98  Identities=24%  Similarity=0.504  Sum_probs=88.7

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++..+++++|.| ..|..++.|+|||.|++ +|++||+.     |++|.+|  .   +++||+.+|..|++|++..|.
T Consensus       120 ~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~---vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          120 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--G---VIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             TTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--G---SCHHHHHHGGGSCTTCEEEEE
T ss_pred             CCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--C---cchhHHHHHcCCCCCCEEEEE
Confidence            45688999999998 58999999999999998 99999984     7888885  3   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      |||.++||..+.+  +||+++.+.|+++|.++
T Consensus       194 IP~~laYG~~g~~--~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          194 IPPELAYGKAGVP--GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             ECGGGTTTTTCBT--TBCTTCCEEEEEEEEEE
T ss_pred             ECchhhcCcCCCC--CCCCCCEEEEEEEEEEe
Confidence            9999999998875  39999999999998765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.47  E-value=1.3e-13  Score=112.40  Aligned_cols=99  Identities=16%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             hcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy4385         281 KQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGN  360 (473)
Q Consensus       281 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~  360 (473)
                      ..|+|++|+..|++++.....            +|....+++++|.+++.+|+|++|+..++++++++|+++.+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            368899999999999932100            57789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         361 AYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       361 a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      ++..+|++++|+..|++++.++|+++.+...
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999999999999876543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.46  E-value=2.5e-13  Score=122.81  Aligned_cols=90  Identities=24%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      +|..++..|+|++|+..|++++               .++|.+..+++++|.++..+|++++|+.+|+++++++|+++.+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELL---------------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            9999999999999999999999               6677789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC--HHHHHHHHHHHH
Q psy4385         355 FFRRGNAYLDLNE--PELAEKDFQKVL  379 (473)
Q Consensus       355 ~~~~g~a~~~lg~--~~~A~~~~~~al  379 (473)
                      |+++|.+|+..++  .+.|...+.+++
T Consensus       125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A          125 NIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            9999988866543  333444555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=3.3e-13  Score=128.03  Aligned_cols=103  Identities=28%  Similarity=0.464  Sum_probs=97.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..++.+|+.++..|+|.+|+..|++++               .+.|.+..+++++|.|++++|+|++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            36688999999999999999999999999               555667889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      +|+++++++++|.+|..+|++++|+..|+++++++|++
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999976

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=2.9e-13  Score=138.27  Aligned_cols=116  Identities=25%  Similarity=0.401  Sum_probs=108.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +.+..+..+|+.++..|+|++|+..|++|+               +++|....+++++|.+++++++|++|+.+|++|++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778899999999999999999999999               55666789999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ++|+++.+++++|.+|..+|++++|+..|++|++++|++..++..++.+..
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888743

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.44  E-value=1.8e-12  Score=105.26  Aligned_cols=115  Identities=32%  Similarity=0.477  Sum_probs=105.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|++..|+..|.+++..               .|....+++++|.++...+++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            567888999999999999999999999944               44456789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      |.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+...
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998888877643

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.44  E-value=3.7e-13  Score=106.87  Aligned_cols=90  Identities=18%  Similarity=0.396  Sum_probs=81.7

Q ss_pred             cCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCC
Q psy4385         160 FSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDK  233 (473)
Q Consensus       160 ~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~  233 (473)
                      ...|..|+.|++||.|++ +|++|++     .++.|.+|.+.   +++||+.+|..|+.||+..+.+||.++||..+...
T Consensus         3 g~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~---~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~   79 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQ---VIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPP   79 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSS---SCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred             CCcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCC---ccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCC
Confidence            357899999999999998 9999997     37899999887   99999999999999999999999999999887643


Q ss_pred             CCCCCCCCceeeeeeccccc
Q psy4385         234 LGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       234 ~~ip~~~~~~y~i~L~~~~~  253 (473)
                       .||+++.+.|++.|.++..
T Consensus        80 -~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           80 -KIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             -TBCTTCCEEEEEEEEEEGG
T ss_pred             -CcCcCCeEEEEEEEEEecc
Confidence             6999999999999988765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=6.8e-13  Score=116.14  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=102.6

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHH-HHHcCCh--hHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMC-LLKLKQA--KPAKDQC  341 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~kl~~~--~~A~~~~  341 (473)
                      .+..+..+..+|..++..|+|.+|+..|++++               .+.|.+..++.++|.+ ++..+++  ++|+..+
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL---------------QLRGENAELYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            33456788999999999999999999999999               5566678899999999 8899999  9999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      +++++++|++..+++.+|.+|..+|++++|+..|++++.++|++......+..
T Consensus       105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999998665444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=1.6e-12  Score=117.02  Aligned_cols=130  Identities=18%  Similarity=0.174  Sum_probs=113.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++++..                  .+.+++++|.++..+|+|++|+..|++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999711                  2568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK----------------AAVQKLTQTKQKLREQKIKEKQVYA  411 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~~~~~~~k~~~~  411 (473)
                      +|.++.+++++|.+|..+|+|++|+..|++++++.|.+.                .++..++.+...+++..++. ..+.
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~  145 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLA  145 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHH
Confidence            999999999999999999999999999999999998877                88999999988876655443 3455


Q ss_pred             HHhhh
Q psy4385         412 NMFDK  416 (473)
Q Consensus       412 ~~f~~  416 (473)
                      +++..
T Consensus       146 ~al~~  150 (213)
T 1hh8_A          146 LATSM  150 (213)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            55443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=1.7e-12  Score=135.57  Aligned_cols=141  Identities=9%  Similarity=0.042  Sum_probs=120.2

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      ....+..+..+..+|..++..|+|++|+..|++++..               +|.+..+++++|.++..+|++++|+.++
T Consensus        16 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A           16 VRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------------HPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3344456778999999999999999999999999944               4556889999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhc
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL---REQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~---~~~~~~~k~~~~~~f~~~~  418 (473)
                      +++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+...+   ++..++ ...|++.+....
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~al~~~p  159 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL-SAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH-HHHHHHHHHHTC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH-HHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999998877   555443 345666555433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.39  E-value=1.6e-12  Score=110.82  Aligned_cols=107  Identities=11%  Similarity=0.007  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .++|.....++++|.+++..|+|++|+..+++++.++|.++.+|+.+|.+|..+|+|++|+..|++++.++|++..++..
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            55677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~~~~  419 (473)
                      ++.+...+++..++. ..|.+.......
T Consensus        95 lg~~~~~~g~~~~A~-~~~~~al~~~p~  121 (148)
T 2vgx_A           95 AAECLLQXGELAEAE-SGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence            999998887766554 456666554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=9.6e-14  Score=148.23  Aligned_cols=117  Identities=12%  Similarity=0.004  Sum_probs=60.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++++               .++|.+..+|+++|.+++.+|+|++|+.+|++|+++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLA---------------ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHh---------------ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44556666666666666666666666666               333344444444554444445555555444444444


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +|+++.+|+++|.+|..+|+|++ +..|++|++++|++..++..++.++..++
T Consensus       497 ~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          497 FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            44444444444444444444444 44444444444444444444444444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.4e-12  Score=117.80  Aligned_cols=146  Identities=15%  Similarity=0.121  Sum_probs=121.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC-----------ChhHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF-----------EGEQETERKKTLTACHLNAAMCLLKLKQAKPA  337 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-----------~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A  337 (473)
                      +..+..+|..++..|++++|+..|++++.+.+.....           ..+......|....++.++|.+++.+|+|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            6888999999999999999999999999754320000           00001124567888999999999999999999


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       338 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +..+++++.++|.++.+++++|.++..+|++++|+..|+++++++|++..++..++.+...+++..++. ..+++++.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~  235 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998876655443 34555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=3.9e-12  Score=110.85  Aligned_cols=132  Identities=14%  Similarity=0.152  Sum_probs=110.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ....+..+|..++..|++++|+..|++++.               ..|....++.++|.++...+++++|+..+++++..
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLA---------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            356778889999999999999999999984               44455778899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....++..++ ...+++++.
T Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~  172 (186)
T 3as5_A          106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-LPHFKKANE  172 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888776554433 334555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.37  E-value=1.4e-12  Score=103.97  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=93.8

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|+|.+|+..|++++..               .|....+++++|.++..+++|++|+..++++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL---------------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345677899999999999999999999944               44457789999999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC
Q psy4385         349 PN--NEKAFFRRGNAYLDL-NEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       349 p~--~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~~  385 (473)
                      |.  +..+++++|.++..+ |++++|+..|.+++..+|.+
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99  999999999999999 99999999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.37  E-value=4.1e-12  Score=118.58  Aligned_cols=141  Identities=17%  Similarity=0.278  Sum_probs=117.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--------cCChhHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK--------LKQAKPAKDQ  340 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------l~~~~~A~~~  340 (473)
                      ...+..+|..++..|+|.+|+..|++++...+..            +....+++++|.|++.        +|++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            6788899999999999999999999999655431            2456789999999999        9999999999


Q ss_pred             HHHHhhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAF-----------------FRRGNAYLDLNEPELAEKDFQKVLQIDPN---NKAAVQKLTQTKQKLR  400 (473)
Q Consensus       341 ~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~~~~~  400 (473)
                      +++++..+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|+   ...++..++.+...++
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999987666                 99999999999999999999999999998   4568888888887662


Q ss_pred             ---------HHHHHHHHHHHHHhhhhcCCC
Q psy4385         401 ---------EQKIKEKQVYANMFDKFAKHD  421 (473)
Q Consensus       401 ---------~~~~~~k~~~~~~f~~~~~~~  421 (473)
                               ...+.....|+++....++.+
T Consensus       200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          200 EQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             ccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence                     222344556777766655543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=9.7e-13  Score=134.39  Aligned_cols=155  Identities=13%  Similarity=0.030  Sum_probs=121.5

Q ss_pred             cccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC---------CCC---------h------
Q psy4385         252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG---------GFE---------G------  307 (473)
Q Consensus       252 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~---------~~~---------~------  307 (473)
                      +.+...+.......+..+..+..+|..++..|+|++|+..|++++.+.+...         ...         .      
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~  199 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV  199 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence            3333444334444445567777888888888888888888888877654300         000         0      


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHc--------CChhHHHHHHHHHhhhCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q psy4385         308 ---EQETERKKTLTACHLNAAMCLLKL--------KQAKPAKDQCDKAIELEP---NNEKAFFRRGNAYLDLNEPELAEK  373 (473)
Q Consensus       308 ---~~~~~~~~~~~~~~~nla~~~~kl--------~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~  373 (473)
                         .....++|.+..+++++|.++..+        ++|++|+..|+++++++|   .++.+|+++|.+|..+|+|++|+.
T Consensus       200 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~  279 (474)
T 4abn_A          200 RQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE  279 (474)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence               111245667788999999999999        999999999999999999   999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4385         374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       374 ~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  406 (473)
                      .|++|++++|++..++..++.+...+++..+.-
T Consensus       280 ~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=1.2e-11  Score=101.56  Aligned_cols=129  Identities=24%  Similarity=0.364  Sum_probs=111.5

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+..+|..++..|++++|+..|++++..               .+....++.++|.++...+++++|+..+++++..+|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc---------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            45677899999999999999999999943               444577899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      .+..+++.+|.++...|++++|+..|.+++...|.+..++..++.+....++..+. ...+.+++
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~  130 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA-IEYYQKAL  130 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH-HHHHHHHH
Confidence            99999999999999999999999999999999999999998888888766554433 33444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.7e-12  Score=119.83  Aligned_cols=116  Identities=24%  Similarity=0.322  Sum_probs=106.6

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+..+|..++..|+|++|+..|++++               ...|....+++++|.++.++|++++|+..++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI---------------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34567788899999999999999999999999               445556789999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID------PNNKAAVQKLTQT  395 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~~  395 (473)
                      ++++|+++.+++.+|.+|..+|++++|+..|+++++++      |++..++..+..+
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999      9998888877665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=1.9e-11  Score=114.09  Aligned_cols=134  Identities=24%  Similarity=0.289  Sum_probs=112.3

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|++|+..|++++               .+.|.+..++.++|.++..+|++++|+..+++++
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQAL---------------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4567889999999999999999999999999               4455568899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +++|.++.+++.+|.+|..+|++++|+..|+++++++|++......+..+. ..+ ..+.....+.+.+..
T Consensus       105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A          105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKL-DEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHH-CHHHHHHHHHHHHHH
T ss_pred             hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH-Hhc-CHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999987665555442 222 223333445444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=9.2e-12  Score=113.95  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=111.2

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|++++|+..|++++.               ..+....++.++|.++..+|++++|+..++++++
T Consensus        55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  119 (243)
T 2q7f_A           55 EDAIPYINFANLLSSVNELERALAFYDKALE---------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR  119 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3467888899999999999999999999994               4445678889999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....++..++. ..+.++..
T Consensus       120 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~  187 (243)
T 2q7f_A          120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL-SQFAAVTE  187 (243)
T ss_dssp             HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            999999999999999999999999999999999999999988888888887765554433 34444443

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.33  E-value=2.4e-12  Score=128.50  Aligned_cols=90  Identities=21%  Similarity=0.414  Sum_probs=82.1

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|++||+++. ||+.|++++  +.|+.|.+|.+.++|||+++|.||++|+++.|.||+..+||..+.     ++
T Consensus       157 ~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----ag  228 (432)
T 1w26_A          157 AVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----KG  228 (432)
T ss_dssp             CCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----SS
T ss_pred             CCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----CC
Confidence            5889999999999996 999999986  579999999999999999999999999999999999999998664     67


Q ss_pred             CceEEEEEEEeeeeccCC
Q psy4385         125 STLVFEVEMISWEAEDIS  142 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~  142 (473)
                      .+++|+|+|+++....++
T Consensus       229 ~~~~F~V~v~~v~~~~lp  246 (432)
T 1w26_A          229 KAAKFAINLKKVEERELP  246 (432)
T ss_dssp             CEEEEEEECCEECCEECC
T ss_pred             ceEEEEEEEEEEeccCCC
Confidence            899999999999765544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.33  E-value=4.7e-12  Score=118.20  Aligned_cols=139  Identities=16%  Similarity=0.229  Sum_probs=113.7

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|.+|+..|++++...+..            +....+++++|.|++++|+|++|+..|++++.+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999665431            233779999999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHH
Q psy4385         348 EPNN---EKAFFRRGNAYLD--------LNEPELAEKDFQKVLQIDPNNKAAV-----------------QKLTQTKQKL  399 (473)
Q Consensus       348 ~p~~---~ka~~~~g~a~~~--------lg~~~~A~~~~~~al~l~P~~~~~~-----------------~~l~~~~~~~  399 (473)
                      .|++   ..++|++|.++..        +|++++|+..|++++..+|++..+.                 ..++.+....
T Consensus        82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  161 (261)
T 3qky_A           82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR  161 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8854   5789999999999        9999999999999999999987665                 5556666665


Q ss_pred             HHHHHHHHHHHHHHhhhhcC
Q psy4385         400 REQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       400 ~~~~~~~k~~~~~~f~~~~~  419 (473)
                      ++..++ ...|+++......
T Consensus       162 g~~~~A-~~~~~~~l~~~p~  180 (261)
T 3qky_A          162 ELYEAA-AVTYEAVFDAYPD  180 (261)
T ss_dssp             TCHHHH-HHHHHHHHHHCTT
T ss_pred             cCHHHH-HHHHHHHHHHCCC
Confidence            554433 3456666554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=8.6e-12  Score=127.34  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=110.4

Q ss_pred             HhhHHHHhhcchhhhcccH-HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         267 EQGKLLKERGTTYFKQDKF-ELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ..+..+..+|..++..|+| ++|+..|++++               .++|.+..+++++|.+|+++|+|++|+.+|++++
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAV---------------KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567889999999999999 99999999999               6666778899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDL---------NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~l---------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++|+ ..+++++|.+|..+         |++++|+..|+++++++|++..++..++.++..+
T Consensus       165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999 79999999999999         9999999999999999999999999999998776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.33  E-value=1.4e-12  Score=139.16  Aligned_cols=119  Identities=12%  Similarity=0.000  Sum_probs=109.0

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|++|+..|++|+               .++|.+..+++++|.++.++|+|++ +.+|++|++
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------------~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~  528 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVL---------------DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS  528 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence            455678889999999999999999999999               6777789999999999999999999 999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      ++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++...+.
T Consensus       529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999999999999988755443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.32  E-value=1e-11  Score=104.77  Aligned_cols=107  Identities=11%  Similarity=0.002  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .++|.....++++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++++.++|+++.++..
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~~~~  419 (473)
                      ++.+...+++..++. ..|.+.......
T Consensus        92 lg~~~~~~g~~~~A~-~~~~~al~~~p~  118 (142)
T 2xcb_A           92 AAECHLQLGDLDGAE-SGFYSARALAAA  118 (142)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            999998887666544 456666555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=1.1e-11  Score=102.50  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA-------  387 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~-------  387 (473)
                      +..+.++.|+|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            4457789999999999999999999999999999999999999999999999999999999999999997743       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         388 AVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       388 ~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++..++.+...+++..++. ..|++.+.
T Consensus        85 ~~~~lg~~~~~~~~~~~A~-~~~~kal~  111 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAV-QWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence            5556666666555444332 34444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.31  E-value=4.8e-12  Score=110.70  Aligned_cols=132  Identities=11%  Similarity=0.098  Sum_probs=109.7

Q ss_pred             HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH
Q psy4385         273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~  352 (473)
                      ...+..++..|+|++|+..|++++               ...|.+..+++++|.+++.+|+|++|+..+.++++++|.++
T Consensus        14 ~~~~~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   78 (177)
T 2e2e_A           14 RDPLHQFASQQNPEAQLQALQDKI---------------RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA   78 (177)
T ss_dssp             STTTCCCC-----CCCCHHHHHHH---------------HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH
T ss_pred             hhhhhhhhhccCHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            345667889999999999999999               55556688999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4385         353 KAFFRRGNA-YLDLNEP--ELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKH  420 (473)
Q Consensus       353 ka~~~~g~a-~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~~  420 (473)
                      .+++.+|.+ +...|++  ++|+..|++++.++|++..++..++.+....++..++ ...|.+++......
T Consensus        79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~  148 (177)
T 2e2e_A           79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA-IELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH-HHHHHHHHhhCCCC
Confidence            999999999 8899999  9999999999999999999999999998887665544 34566666554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=8.8e-12  Score=123.19  Aligned_cols=119  Identities=16%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      +..+..+..+|..+...|++.+|+..|++++...+               ....++.++|.++...+++++|+..+.+++
T Consensus       166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  230 (388)
T 1w3b_A          166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---------------NFLDAYINLGNVLKEARIFDRAVAAYLRAL  230 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456777788888888888888888888885433               334444444444444444444444444444


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      .++|+++.+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus       231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            444444444444444444444444444444444444444444444444444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.29  E-value=3.1e-11  Score=99.16  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      ..+..+.++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy4385         396 KQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       396 ~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ...+++..++. ..|.+.+.
T Consensus        82 ~~~~~~~~~A~-~~~~~al~  100 (126)
T 3upv_A           82 QIAVKEYASAL-ETLDAART  100 (126)
T ss_dssp             HHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHhCHHHHH-HHHHHHHH
Confidence            98887665543 34555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.29  E-value=6.8e-12  Score=114.85  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=117.0

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .....+..+|..++..|++++|+..|++++..               .+....++.++|.++.++|++++|+..++++++
T Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  153 (243)
T 2q7f_A           89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA---------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE  153 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45677888999999999999999999999944               444567899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++|.+..+++.+|.++...|++++|+..|++++..+|++..++..++.+....++..++ ...+++++..
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~  222 (243)
T 2q7f_A          154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-LEMLDKAIDI  222 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH-HHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999998777555443 3455555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=7.4e-12  Score=123.71  Aligned_cols=127  Identities=18%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ  340 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  340 (473)
                      .....+..+..+..+|..++..|++++|+..|++++.               +.|....+++++|.++.++|++++|+..
T Consensus        59 a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~  123 (388)
T 1w3b_A           59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR---------------LKPDFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------cCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3344455677899999999999999999999999994               4445566677777777777777777777


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      +.++++++|++..+++.+|.++..+|++++|+..|.+++.++|++..++..++.+....++.
T Consensus       124 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  185 (388)
T 1w3b_A          124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI  185 (388)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            77777777777777777777777777777777777777777777777777666666554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=1.6e-11  Score=110.35  Aligned_cols=103  Identities=15%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|+|.+|+..|++++               .+.|....+++++|.++..+|+|++|+.++++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSI---------------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            5688999999999999999999999999               5555668899999999999999999999999999998


Q ss_pred             CCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         349 PNNE----------------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       349 p~~~----------------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      |.+.                .+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            8877                9999999999999999999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.28  E-value=3.6e-12  Score=124.50  Aligned_cols=122  Identities=14%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|++++|+..|++++               .+.|....+++++|.++.++|++++|+..|++++++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  280 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAAL---------------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  280 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34556667777777777777777777777               333444566777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN-----------KAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~~~~~~~~~~~  404 (473)
                      +|.++.+++++|.+|..+|++++|+..|++++.++|++           ..++..++.+...+++..+
T Consensus       281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            77777777777777777777777777777777777766           5666666666666554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.28  E-value=4e-11  Score=115.98  Aligned_cols=120  Identities=18%  Similarity=0.277  Sum_probs=107.0

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      ....|..++..|++++|+..|++++...+..           ......++.++|.++.++|++++|+..++++++++|++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSV-----------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN  305 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence            4466899999999999999999999765531           22345678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      +.+++++|.++..+|++++|+..|+++++++|++..++..+..+...+++.
T Consensus       306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=1.3e-11  Score=113.96  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=100.2

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|++++|+..|++++..               .+....++.++|.++..+|++++|+..+++++.
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALAS---------------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            34667788888889999999999999998843               344566778888888888888888888888888


Q ss_pred             --hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         347 --LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       347 --~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                        .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++. ..+.+++
T Consensus       134 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~  202 (252)
T 2ho1_A          134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR-QYYDLFA  202 (252)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence              777777888888888888888888888888888888888877777777776665444333 3444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.27  E-value=1.9e-11  Score=112.80  Aligned_cols=135  Identities=13%  Similarity=0.135  Sum_probs=115.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .....+..+|..++..|++++|+..|++++. .            ...+....++.++|.+++++|++++|+..+.++++
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D------------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C------------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C------------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4466788899999999999999999999995 1            02345678899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      .+|.+..+++.+|.++..+|++++|+..|++++..+|++..++..+..+....++..+. ...++++..
T Consensus       170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A-~~~~~~~~~  237 (252)
T 2ho1_A          170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA-ASYGLQLKR  237 (252)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH-HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888888776555443 334555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.27  E-value=3.5e-12  Score=124.85  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHH--HHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT--LTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ..+..+|..+...|++++|+..|++++..               .|.  .+.+++++|.++..+|++++|+..+++++++
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQ---------------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHH---------------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHh---------------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34444555566666666666666666632               222  3445556666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                      +|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            66666666666666666666666666666666666666666666665555554333

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.27  E-value=2.2e-11  Score=119.17  Aligned_cols=101  Identities=14%  Similarity=0.220  Sum_probs=94.5

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +..+|..++..|+|++|+..|++++               .+.|.+..+++++|.++.++|++++|+..|+++++++|++
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAAL---------------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4567889999999999999999999               7778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      +.+++++|.+|..+|++++|+..|+++++++|++..
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            999999999999999999999999999999998754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.27  E-value=3e-11  Score=105.17  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=115.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|++.+|+..|++++...+               ....++.++|.++...|++++|+..++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---------------FDVDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            466788899999999999999999999995433               34678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.+....++..+. ...+.+++..
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-~~~~~~~~~~  139 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA-IDSFKIALGL  139 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH-HHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999988776655543 3355555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=8.4e-13  Score=105.57  Aligned_cols=92  Identities=22%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|+|.+|+..|++++               .+.|.+..+++++|.|++++|+|++|+.+|+++++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLI---------------TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3445555555555555555555555555               3333344555555555555555555555555555555


Q ss_pred             CCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q psy4385         349 PNN------EKAFFRRGNAYLDLNEPELAEKDF  375 (473)
Q Consensus       349 p~~------~ka~~~~g~a~~~lg~~~~A~~~~  375 (473)
                      |++      ..+++++|.++..+|++++|+..+
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence            555      555555555555555555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=6.9e-11  Score=107.86  Aligned_cols=110  Identities=15%  Similarity=0.206  Sum_probs=96.2

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|+|++|+..|++++...+..            +....+++++|.|++++|+|++|+..|+++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            4578889999999999999999999999654431            2245789999999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         349 PNNEK---AFFRRGNAYLD------------------LNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       349 p~~~k---a~~~~g~a~~~------------------lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      |++..   ++|.+|.++..                  +|++++|+..|+++++.+|++..+..
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99875   89999999986                  57999999999999999999876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.25  E-value=3.4e-11  Score=117.52  Aligned_cols=152  Identities=12%  Similarity=0.116  Sum_probs=122.2

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh----------------------------------hHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG----------------------------------EQET  311 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~----------------------------------~~~~  311 (473)
                      +..+..+..+|..+...|++.+|+..|++++...+.......                                  ....
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  208 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  208 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            345667788888888888888888888888876554221110                                  0111


Q ss_pred             HHHHH--HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         312 ERKKT--LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       312 ~~~~~--~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      ...|.  ...++.++|.++.++|++++|+..+++++.++|+++.+++++|.++..+|++++|+..|++++.++|++..++
T Consensus       209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  288 (368)
T 1fch_A          209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR  288 (368)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            23344  5788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         390 QKLTQTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       390 ~~l~~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      ..++.+...+++..++. ..|.+++....
T Consensus       289 ~~l~~~~~~~g~~~~A~-~~~~~al~~~~  316 (368)
T 1fch_A          289 YNLGISCINLGAHREAV-EHFLEALNMQR  316 (368)
T ss_dssp             HHHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHH-HHHHHHHHhCC
Confidence            99999998876665443 45566655433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.25  E-value=7.5e-11  Score=106.22  Aligned_cols=132  Identities=17%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHhh-
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-KQAKPAKDQCDKAIE-  346 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al~-  346 (473)
                      ...+..+|..++..|++++|+..|.+++               ...|....++.++|.++..+ |++++|+..++++++ 
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQAL---------------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD  106 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence            3344445555555555555555555555               33344566777777777777 777777777777777 


Q ss_pred             -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         347 -LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       347 -~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                       .+|.+..+++.+|.++...|++++|+..|.++++.+|++..++..++.+....++..++ ...+.+++..
T Consensus       107 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~  176 (225)
T 2vq2_A          107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA-DYYFKKYQSR  176 (225)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Confidence             55555677777777777777777777777777777777777777777776665544433 3344554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.25  E-value=1.9e-11  Score=114.08  Aligned_cols=118  Identities=15%  Similarity=0.152  Sum_probs=89.7

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++++. .+...           .....++.++|.++..+|++++|+.++++++++
T Consensus        36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~  103 (272)
T 3u4t_A           36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT-----------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR  103 (272)
T ss_dssp             CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            344677788888888888888888888886 22111           112456778888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT-QTKQ  397 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~-~~~~  397 (473)
                      +|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++ .+..
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A          104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888877777 5543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.25  E-value=3.4e-11  Score=114.42  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=96.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH----
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK----  343 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~----  343 (473)
                      ....+..+|..+...|++++|+..|++++               ..+|.+..+++++|.+++.+|++++|+..+++    
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAW---------------QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHH---------------HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            34567889999999999999999999999               66667788888888888888888777655554    


Q ss_pred             ------------------------------HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHH
Q psy4385         344 ------------------------------AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQK  391 (473)
Q Consensus       344 ------------------------------al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~  391 (473)
                                                    ++.++|+++.+++++|.+|...|++++|+..|.++++++|++  ..++..
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence                                          456677888888888888888888888888888888888877  667777


Q ss_pred             HHHHHHHHHHHHH
Q psy4385         392 LTQTKQKLREQKI  404 (473)
Q Consensus       392 l~~~~~~~~~~~~  404 (473)
                      |..+...+++..+
T Consensus       261 l~~~~~~~g~~~~  273 (287)
T 3qou_A          261 FQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHHHCTTCH
T ss_pred             HHHHHHHcCCCCc
Confidence            7777766654433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.25  E-value=1.9e-11  Score=110.14  Aligned_cols=79  Identities=15%  Similarity=0.054  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP-NNKAAVQKLTQT  395 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P-~~~~~~~~l~~~  395 (473)
                      ...++.++|.++..+|++++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|++++.++| ++..++..+..+
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  191 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI  191 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444444444444444 444444333333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.25  E-value=1.6e-11  Score=107.58  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=108.9

Q ss_pred             cccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHH-HHH
Q psy4385         252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMC-LLK  330 (473)
Q Consensus       252 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~k  330 (473)
                      +.+...+.......+..+..+..+|..+...|++++|+..|++++...+                .+..+..++.+ +..
T Consensus        23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------------~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------------DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------------ChHHHHHHHHHHHHh
Confidence            3344445545666677788888999999999999999999999884432                22233333333 223


Q ss_pred             cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         331 LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--KAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       331 l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      ......|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..++.+...+++..+. ..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A-~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI-AS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH-HH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH-HH
Confidence            3445568999999999999999999999999999999999999999999999875  55888888888777555443 33


Q ss_pred             HHHHHhhh
Q psy4385         409 VYANMFDK  416 (473)
Q Consensus       409 ~~~~~f~~  416 (473)
                      .|++.+..
T Consensus       166 ~y~~al~~  173 (176)
T 2r5s_A          166 KYRRQLYS  173 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.25  E-value=1.2e-10  Score=95.32  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHh
Q psy4385         400 REQKIKEKQVYANMF  414 (473)
Q Consensus       400 ~~~~~~~k~~~~~~f  414 (473)
                      ++..++. ..+.+.+
T Consensus        99 g~~~~A~-~~~~~al  112 (121)
T 1hxi_A           99 HNANAAL-ASLRAWL  112 (121)
T ss_dssp             HHHHHHH-HHHHHHH
T ss_pred             CCHHHHH-HHHHHHH
Confidence            7666544 3444444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.24  E-value=4.2e-11  Score=96.74  Aligned_cols=98  Identities=11%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC
Q psy4385         287 LACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN  366 (473)
Q Consensus       287 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg  366 (473)
                      .|+..|++++..               .|.+..+++++|.+++.+|+|++|+..|++++.++|.+..+|+++|.+|..+|
T Consensus         3 ~a~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQ---------------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTT---------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            578889999944               44557899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHH
Q psy4385         367 EPELAEKDFQKVLQIDPN--NKAAVQKLTQTKQKL  399 (473)
Q Consensus       367 ~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~  399 (473)
                      ++++|+..|++++.++|.  +..+...+......+
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence            999999999999999885  344555555554444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.23  E-value=6.2e-11  Score=100.78  Aligned_cols=99  Identities=13%  Similarity=0.084  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN-------NEK-----AFFRRGNAYLDLNEPELAEKDFQKVLQI---  381 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~g~a~~~lg~~~~A~~~~~~al~l---  381 (473)
                      .+..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|.+||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4667899999999999999999999999999999       554     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         382 ----DPNNKAAV----QKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       382 ----~P~~~~~~----~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                          +|++..++    ..++.++..+++..++.. .|++...-
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAlel  131 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVEM  131 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHhc
Confidence                99999999    999999999887776654 55555543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.23  E-value=9.4e-11  Score=109.31  Aligned_cols=130  Identities=12%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      ++..+...++|++|+..|++++...+           ...+....+++++|.++..+|++++|+..+++++.++|.++.+
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   79 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRA-----------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   79 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSC-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhccc-----------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence            45566778999999999999996432           1145678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++..++ ...+.+++..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~  140 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH-HHHHHHHHHh
Confidence            999999999999999999999999999999999999999998887665543 3456666553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=118.06  Aligned_cols=124  Identities=19%  Similarity=0.160  Sum_probs=101.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|++++|+..|++++...+.......      .+....++.++|.++.++|++++|+..+++++++
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            3456666777777777777777777777755432111000      0334568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.23  E-value=7e-11  Score=114.28  Aligned_cols=110  Identities=24%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|+|++|+..|++++               ...|.+..+++++|.+++.+|++++|+..++++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l---------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999               5555668899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP---NNKAAVQKLT  393 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P---~~~~~~~~l~  393 (473)
                      |++..+++.+|.++..+|++++|+..|++++.++|   ++..++..+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            99999999999999999999999999999999999   8888877774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.22  E-value=1.3e-10  Score=100.30  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      ..+..++++|.++++.++|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCc
Q psy4385         396 KQKLREQKIKEKQVYANMFDKFAKHDT  422 (473)
Q Consensus       396 ~~~~~~~~~~~k~~~~~~f~~~~~~~~  422 (473)
                      +..+++..++. ..|++.+........
T Consensus        89 ~~~~g~~~~A~-~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           89 RFDMADYKGAK-EAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHTTCHHHHH-HHHHHHHHHHSSSCC
T ss_pred             HHHccCHHHHH-HHHHHHHHhCCCchH
Confidence            98887666444 466776665554443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.22  E-value=2.1e-11  Score=116.64  Aligned_cols=123  Identities=13%  Similarity=0.260  Sum_probs=101.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ....+..+|..++..|++++|+..|++++               ...|....++.++|.++..+|++++|+..+++++++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAV---------------ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            45677788888888899999999998888               444455678888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN------------NKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      +|.+..+++.+|.+|..+|++++|+..|++++.++|+            +..++..++.+...+++..++
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            8888888999999999999999999999999988888            677788888887776554433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.4e-10  Score=92.34  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQ  390 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~  390 (473)
                      .+..++++|.+++..|+|++|+..|+++++++|.++.+++++|.+|..+|+|++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999998      66666


Q ss_pred             HHHHHHHHH
Q psy4385         391 KLTQTKQKL  399 (473)
Q Consensus       391 ~l~~~~~~~  399 (473)
                      .++.+...+
T Consensus        83 ~~~~~~~~~   91 (111)
T 2l6j_A           83 RLELAQGAV   91 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.20  E-value=3e-11  Score=115.73  Aligned_cols=136  Identities=20%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             HHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      .+..+..+..+|..++..| ++++|+..|++++...               |....++.++|.++..+|++++|+..+++
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE---------------KTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3345677888999999999 9999999999999543               34567899999999999999999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +++++|.+..+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++..++. ..+.+++..
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~  222 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE-KWFLDALEK  222 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988776655443 345555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=2e-10  Score=87.95  Aligned_cols=83  Identities=35%  Similarity=0.480  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      ....+++++|.++..+++|++|+..+++++.++|.+..+++++|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHH
Q psy4385         396 KQK  398 (473)
Q Consensus       396 ~~~  398 (473)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=8.9e-11  Score=111.72  Aligned_cols=130  Identities=14%  Similarity=0.046  Sum_probs=106.6

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-KQAKPAKDQCDKAI  345 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~~~~~A~~~~~~al  345 (473)
                      ..+..+.++|+.+...|+|++|+.+|++|+.+.+....         ....+.++.++|.+|..+ |++++|+.+|++|+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            45788999999999999999999999999966542110         112367899999999995 99999999999999


Q ss_pred             hhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA-------AVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       346 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~-------~~~~l~~~~~~~~~~~~~  405 (473)
                      ++.|.+      ..++.++|.+|..+|+|++|+..|++++.+.|++..       ++..++.+...+++..++
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence            998754      568999999999999999999999999999998754       456677777666554433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.20  E-value=8.9e-11  Score=109.48  Aligned_cols=118  Identities=20%  Similarity=0.215  Sum_probs=106.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..+...|++++|+..|++++               .+.|....++.++|.++..+|++++|+..++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAV---------------DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH---------------hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            5568899999999999999999999999               5555667899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      |.++.+++++|...+..+++++|+..|+++++++|++..++..++.+...+..
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999444445599999999999999999999999999988877644

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.19  E-value=1e-10  Score=111.44  Aligned_cols=130  Identities=14%  Similarity=0.048  Sum_probs=102.3

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHH----HHHcCChhHHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMC----LLKLKQAKPAKDQCDK  343 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~kl~~~~~A~~~~~~  343 (473)
                      ....+..+|..+.+.|++++|+..|++++...+               ...  ..+++.+    +...|++++|+..+++
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p---------------~~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~  191 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDE---------------DAT--LTQLATAWVSLAAGGEKLQDAYYIFQE  191 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCH--HHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---------------CcH--HHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            455777788889999999999999999985432               222  2233322    2234889999999999


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +++.+|+++.+|+++|.++..+|++++|+..|++++.++|+++.++..++.+...+++..+.....++++.
T Consensus       192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888777665554444555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.2e-10  Score=118.98  Aligned_cols=108  Identities=25%  Similarity=0.334  Sum_probs=99.5

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      +.+.+..+..+|+.+++.|+|.+|+..|++++..               .| +..+++++|.|++++|+|++|+..|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL---------------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            4567889999999999999999999999999944               34 3778999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ++++|+++.+++.+|.+|..+|++++|+..|++++.++|.+...
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            99999999999999999999999999999999999999976543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.19  E-value=2.3e-10  Score=114.91  Aligned_cols=116  Identities=22%  Similarity=0.297  Sum_probs=105.5

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+..+|..++..|+|.+|+..|++++               ...|.+..+++++|.+++.+|++++|+..++++
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAV---------------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999               455566889999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQKLTQT  395 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~  395 (473)
                      ++++|+++.+++.+|.+|..+|++++|+..|++++.++|++.   .++..+..+
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998   776666443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=1.6e-10  Score=107.67  Aligned_cols=142  Identities=20%  Similarity=0.256  Sum_probs=117.4

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|.+|+..|++++.+......       ...+....++.++|.++..+|++++|+..+.+++
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456788999999999999999999999999965421000       0036678899999999999999999999999999


Q ss_pred             hh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         346 EL--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI--------DPNNKAAVQKLTQTKQKLREQKIKEKQV  409 (473)
Q Consensus       346 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~k~~  409 (473)
                      .+        +|....+++++|.+|..+|++++|+..|++++.+        +|....++..++.+...+++..++. ..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~  191 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE-TL  191 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HH
Confidence            88        5777899999999999999999999999999999        6777778889999988876665443 34


Q ss_pred             HHHHhh
Q psy4385         410 YANMFD  415 (473)
Q Consensus       410 ~~~~f~  415 (473)
                      +.+++.
T Consensus       192 ~~~~l~  197 (283)
T 3edt_B          192 YKEILT  197 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.18  E-value=1.5e-11  Score=121.06  Aligned_cols=98  Identities=19%  Similarity=0.407  Sum_probs=83.1

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+|||+++. ||+.|+++  .+.|+.|.+|.|.++|||+++|.||++|+++.|.|++...||..+.     ++
T Consensus       160 ~~~~gD~V~i~y~g~~-dG~~fd~~--~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----aG  231 (392)
T 1t11_A          160 AAENGKRVSIDFVGSI-DGVEFEGG--KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KG  231 (392)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTC--EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEccCC--CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----CC
Confidence            5889999999999995 99999988  3579999999999999999999999999999999986677887543     78


Q ss_pred             CceEEEEEEEeeeeccCCCCCCCCceE
Q psy4385         125 STLVFEVEMISWEAEDISPTHDGGIRR  151 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k  151 (473)
                      .+++|+|+|+++....++. -|..+.+
T Consensus       232 k~~~F~V~v~~i~~~~lpe-ldDEfak  257 (392)
T 1t11_A          232 KAAKFAIKVNKVEARELPE-LNDEFVA  257 (392)
T ss_dssp             CEEEECCCEEEEEEEECCC-CSTGGGG
T ss_pred             CeEEEEEEEEEEEcCCCCC-cCHHHHH
Confidence            9999999999998765553 3344443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=5.1e-11  Score=97.66  Aligned_cols=103  Identities=26%  Similarity=0.438  Sum_probs=93.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ....+..+|..++..|++++|+..|++++..               .+....+++++|.++...|++++|+..+.+++..
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3556778899999999999999999999944               3445678899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      .|.+..+++.+|.++...|++++|+..|.+++.++|++
T Consensus        99 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.17  E-value=1.6e-10  Score=105.45  Aligned_cols=132  Identities=13%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK------------------  330 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k------------------  330 (473)
                      ...+..+|..+++.|+|++|+..|+++++..+...            ....+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------------THHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            45788899999999999999999999996655421            123478888888876                  


Q ss_pred             cCChhHHHHHHHHHhhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy4385         331 LKQAKPAKDQCDKAIELEPNNEKAF-----------------FRRGNAYLDLNEPELAEKDFQKVLQIDPNNK---AAVQ  390 (473)
Q Consensus       331 l~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~---~~~~  390 (473)
                      ++++++|+..++++++..|++..++                 +.+|.+|...|+|++|+..|+++++..|+++   .++.
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            5789999999999999999988665                 6789999999999999999999999999986   5688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         391 KLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       391 ~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      .++.+..++++..++. +.++.+
T Consensus       189 ~l~~~~~~~g~~~~A~-~~~~~l  210 (225)
T 2yhc_A          189 LMENAYRQMQMNAQAE-KVAKII  210 (225)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHHHcCCcHHHH-HHHHHH
Confidence            8888888876666554 334443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.16  E-value=3.6e-10  Score=113.52  Aligned_cols=119  Identities=18%  Similarity=0.279  Sum_probs=105.5

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +...|..++..|++.+|+..|++++...+..           ......++.++|.++.++|++++|+..|++++.++|++
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  328 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN  328 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3455999999999999999999999655421           12235689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                      +.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus       329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999988766544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=2.4e-10  Score=108.67  Aligned_cols=112  Identities=20%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             hhHHHHhhcchhhhc-ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYFKQ-DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .+..+.++|..+... |+|++|+.+|++|+.+.+...         .......++.++|.++.++|+|++|+.+|++++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            366888999999996 999999999999996654211         0112367899999999999999999999999999


Q ss_pred             hCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         347 LEPNNEK-------AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       347 ~~p~~~k-------a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      +.|.+..       +|+++|.++..+|++++|+..|++++.++|+....
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9987653       68999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.15  E-value=1e-10  Score=120.23  Aligned_cols=117  Identities=25%  Similarity=0.344  Sum_probs=99.9

Q ss_pred             ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385         257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP  336 (473)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  336 (473)
                      ...++..+....+..+..+|+.++..|+|.+|+..|++++               ..+|.++.+++++|.|++++|+|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---------------ELDPNEPVFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------hhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            3456678888899999999999999999999999999999               5566678999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      |+..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|+.....
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~  129 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS  129 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH
Confidence            9999999999999999999999999999999999999995 999999876543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=1.9e-10  Score=90.66  Aligned_cols=72  Identities=15%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      +|.++.+++++|.+++++|+|++|+..++++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            456688999999999999999999999999999999999999999999999999999999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.13  E-value=3.8e-10  Score=93.60  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      .+..+..++++|.+++..|+|++|+..+.+++.++|.++.+++++|.++..+|+|++|+..|+++++++|++..++..++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Q psy4385         394 QTKQKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       394 ~~~~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      .+...+++..++. ..|++++...
T Consensus        85 ~~~~~~~~~~~A~-~~~~~a~~~~  107 (137)
T 3q49_B           85 QCQLEMESYDEAI-ANLQRAYSLA  107 (137)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHhhHHHHH-HHHHHHHHHC
Confidence            9998887665443 4555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.11  E-value=1.3e-10  Score=119.61  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      ...|....++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  383 (537)
T 3fp2_A          304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF  383 (537)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            44556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++.+....++..++. ..|.+++..
T Consensus       384 l~~~~~~~g~~~~A~-~~~~~a~~~  407 (537)
T 3fp2_A          384 FAEILTDRGDFDTAI-KQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHH-HHHHHHHHc
Confidence            998887776555443 345555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.11  E-value=1.7e-10  Score=110.30  Aligned_cols=127  Identities=12%  Similarity=0.191  Sum_probs=109.8

Q ss_pred             cc-hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         276 GT-TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       276 G~-~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      |. .+...|++.+|+..|++++               ...|....++.++|.++..+|++++|+..++++++++|+++.+
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  208 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAAL---------------EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL  208 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhHHHHHcccHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            44 5889999999999999999               4445567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         355 FFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       355 ~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      ++.+|.++...|++++|+..|+++++++|++..++..++.+...+++..++. ..++++.....
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~  271 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA-KQLVRAIYMQV  271 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999988776655443 45566555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.11  E-value=2.5e-10  Score=99.83  Aligned_cols=129  Identities=14%  Similarity=0.088  Sum_probs=107.8

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .+...|..++..|++++|+..|++++               ..+|.+..+++++|.+++.+|++++|+..+++++..+| 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLS---------------DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSC---------------HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence            46678889999999999999999999               88889999999999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         351 NEKAFFRRGNAYL-DLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       351 ~~ka~~~~g~a~~-~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++..+..++.+.. ..+...+|+..|+++++++|++..++..++.+....++..+.. ..|.++...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~  137 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL-ELLWNILKV  137 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH-HHHHHHHHh
Confidence            8877666664433 3334456899999999999999999999999998876665444 355555544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.11  E-value=2.9e-10  Score=118.58  Aligned_cols=119  Identities=12%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      .|++++|+..|++++               ..+|.+..+++++|.++..+|+|++|+..++++++++|++..+++++|.+
T Consensus         2 ~g~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAV---------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            478999999999999               66677788999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       362 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      |..+|++++|+..|+++++++|++..++..++.++..+++..++. ..|++.+..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  120 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQL  120 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999998876665443 345555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.09  E-value=2e-10  Score=109.39  Aligned_cols=96  Identities=8%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG  359 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g  359 (473)
                      ...|++++|+..|++++               ...|.++.+++++|.|++++|++++|+..++++++++|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l---------------~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMA---------------DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHH---------------HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35589999999999999               445566889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHH-HHHHHHHHHhcCCCCHHHHH
Q psy4385         360 NAYLDLNEPEL-AEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       360 ~a~~~lg~~~~-A~~~~~~al~l~P~~~~~~~  390 (473)
                      .++..+|++++ |..+++++++++|+++.+..
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999976 56899999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.07  E-value=5.1e-10  Score=104.28  Aligned_cols=109  Identities=19%  Similarity=0.164  Sum_probs=95.1

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|++|+..|.+++.+......       .-.+....++.++|.++..+|++++|+..+++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999965421000       0036778899999999999999999999999999


Q ss_pred             hh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         346 EL--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       346 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .+        +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99        7778899999999999999999999999999987

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=8.6e-10  Score=111.63  Aligned_cols=127  Identities=16%  Similarity=0.084  Sum_probs=102.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|++|+.+.+.....      ..++.....|.|+|.+|..+|+|++|+.++++++++
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            36678889999999999999999999999765421100      113445678999999999999999999999999987


Q ss_pred             C--------CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         348 E--------PNNEKAFFRRGNAYLDL--NEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       348 ~--------p~~~ka~~~~g~a~~~l--g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      .        +..+.++.++|.++...  ++|++|+.+|++|++++|+++.++..++.+...+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            3        45678888898888765  46999999999999999999999888887765553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.06  E-value=6.6e-10  Score=95.56  Aligned_cols=99  Identities=16%  Similarity=0.162  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------------------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------------------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a  378 (473)
                      .+..+.++|..+++.|+|+.|+..|++++.+                  +|.++.+|+++|.||..+|+|++|+.+|.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         379 LQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       379 l~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +.++|++..++..++.++..+++..++.. .|.+.+..
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al~l  126 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEE-DLKLLLRN  126 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHHhc
Confidence            99999999999999999998877765543 45555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.06  E-value=7e-10  Score=98.80  Aligned_cols=125  Identities=15%  Similarity=0.013  Sum_probs=97.2

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH---
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE---  352 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---  352 (473)
                      +...-..+.|+.|...|....               ...+..+..+.++|.+++..++|++|+..|.+++.+.|.++   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   75 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTD---------------EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD   75 (198)
T ss_dssp             -----------CCCSGGGCCH---------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred             hhhhhhhhhccccCchhhCCH---------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence            334444555555555555444               45566788999999999999999999999999999999887   


Q ss_pred             -------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         353 -------------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       353 -------------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                                   .+++++|.+|..+|+|++|+.+|.+++.++|++..++..++.+...+++..++. ..|++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~  151 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK-ENLYKAASL  151 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH-HHHHHHHHH
Confidence                         899999999999999999999999999999999999999999998887665543 455555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.05  E-value=9.1e-10  Score=108.64  Aligned_cols=133  Identities=18%  Similarity=0.193  Sum_probs=110.9

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..++..|++..|+..|.+|+.+.+....        ..+..+.+++++|.++..+|+|++|+.++.+|
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4456888999999999999999999999999977664321        14456789999999999999999999999999


Q ss_pred             hhhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNE------KAFFRRGNAYLDLNEPELAEKDFQKVLQ-----ID-PNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       345 l~~~p~~~------ka~~~~g~a~~~lg~~~~A~~~~~~al~-----l~-P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      +.+.+...      .+++++|.+|..+|++++|+..|++|+.     .+ |....++..++.+...+++..++
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            98855432      5899999999999999999999999999     46 77778888898888777665544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.05  E-value=9e-10  Score=104.65  Aligned_cols=139  Identities=12%  Similarity=-0.040  Sum_probs=109.4

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  347 (473)
                      +..+..+|..++..++|++|+..|++|+.+.......         .....++.++|.+|..+|+|++|+.+++++++. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4456668999999999999999999999854432211         123568999999999999999999999999953 


Q ss_pred             ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         348 ------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       348 ------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                            .+..+.+++++|.+|..+|+|++|+..+++|+++.+..      ..++..++.+...+++..+.....|++.+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence                  23345789999999999999999999999999987654      678899999998887443444455555554


Q ss_pred             h
Q psy4385         416 K  416 (473)
Q Consensus       416 ~  416 (473)
                      -
T Consensus       266 i  266 (293)
T 3u3w_A          266 F  266 (293)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.04  E-value=2.6e-09  Score=90.29  Aligned_cols=139  Identities=17%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|++|+..|.+++.+.+..         ........++.++|.++..+|++++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3457788999999999999999999999999765421         1123345789999999999999999999999999


Q ss_pred             hhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       346 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      .+.+..      ..+++++|.++..+|++++|+..+++++.+.+..      ..++..++.+...+++..++. ..+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  155 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  155 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            886543      6789999999999999999999999999874322      345666777776665544333 334443


Q ss_pred             h
Q psy4385         414 F  414 (473)
Q Consensus       414 f  414 (473)
                      +
T Consensus       156 ~  156 (164)
T 3ro3_A          156 L  156 (164)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=3.8e-10  Score=115.07  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=91.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHH------HHHHHHHHHHHH---cCChhHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLT------ACHLNAAMCLLK---LKQAKPAKD  339 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~------~~~~nla~~~~k---l~~~~~A~~  339 (473)
                      ...+..+|..++..|++++|+..|++++               ...|...      .+++++|.++..   +|++++|+.
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~  436 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAI---------------ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN  436 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence            3445555555666666666666666665               3334432      389999999999   999999999


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      .+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..+....
T Consensus       437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887765443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.03  E-value=1.2e-10  Score=91.14  Aligned_cols=68  Identities=22%  Similarity=0.394  Sum_probs=56.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEK-AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       322 ~nla~~~~kl~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      +++|.++++.++|++|+..|+++++++|+++. +++++|.+|..+|++++|+..|+++++++|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56788888888888888888888888888888 888888888888888888888888888888887776

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=8.7e-10  Score=84.30  Aligned_cols=84  Identities=27%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..++|.+|+..|++++               .+.|....+++++|.++.+++++++|+..+++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL---------------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46678899999999999999999999999               445556789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcC
Q psy4385         348 EPNNEKAFFRRGNAYLDLN  366 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg  366 (473)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.03  E-value=6.4e-10  Score=116.04  Aligned_cols=133  Identities=13%  Similarity=0.086  Sum_probs=114.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..+++.|++++|+..|++++               .+.|.+..++++++.++.+.|++++|+..+++++..
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSS---------------TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45667778889999999999999999998               445556778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +|.+..+++.+|.+|...|++++|+..|+++++++|.+..++..++.+..+.++..++ .+.|.+++..
T Consensus       437 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  504 (597)
T 2xpi_A          437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA-INHFQNALLL  504 (597)
T ss_dssp             TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH-HHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988877655544 3456666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=2.3e-10  Score=90.75  Aligned_cols=98  Identities=17%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NKAAVQKLTQ  394 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~  394 (473)
                      +..+++++|.+++..+++++|+..++++++++|.+..+++++|.++..+|++++|+..|+++++++|+  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            35577899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhh
Q psy4385         395 TKQKL-REQKIKEKQVYANMFD  415 (473)
Q Consensus       395 ~~~~~-~~~~~~~k~~~~~~f~  415 (473)
                      +...+ ++..+.. +.+.++..
T Consensus        85 ~~~~~~~~~~~A~-~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVEAE-IAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHHHH-HHHHHHGG
T ss_pred             HHHHHhCCHHHHH-HHHHHHhh
Confidence            98776 6555433 34444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=2.3e-09  Score=101.76  Aligned_cols=140  Identities=13%  Similarity=-0.015  Sum_probs=109.4

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh-
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI-  345 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al-  345 (473)
                      ..+..+...|..+...|+|++|+..|++|+.........         .....+++++|.+|..+|+|++|+.++++|+ 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~  183 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556678888889999999999999999765432111         1236689999999999999999999999999 


Q ss_pred             --hhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         346 --ELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       346 --~~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                        +..|++.    .+++++|.+|..+|+|++|+..|++++.+.++.      ..++..++.+...+++..++-...|++.
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence              4456543    699999999999999999999999999986431      5678889999888876666534445544


Q ss_pred             hh
Q psy4385         414 FD  415 (473)
Q Consensus       414 f~  415 (473)
                      ..
T Consensus       264 l~  265 (293)
T 2qfc_A          264 SF  265 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.02  E-value=1.8e-09  Score=84.32  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             HHHHHHHH-HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         312 ERKKTLTA-CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       312 ~~~~~~~~-~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      ...|.... +++++|.|+..+|++++|+.+|+++++++|++..++++        +.+.+|+..|.+++.++|++.
T Consensus        28 ~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           28 QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            45566778 99999999999999999999999999999999998865        567888999998888888764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.01  E-value=2.5e-09  Score=108.81  Aligned_cols=143  Identities=15%  Similarity=0.088  Sum_probs=110.4

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+.+..+....+.+..+..+|+|++|+..|++++.+....-.       .-+|..+..+.|+|.+|..+|+|++|+.++.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-------DTNLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            334555666667777888999999999999999977654322       2256778999999999999999999999999


Q ss_pred             HHhhh-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHHHHHHHHHH
Q psy4385         343 KAIEL-----EPN---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQI-----DPNNKAAV---QKLTQTKQKLREQKIKE  406 (473)
Q Consensus       343 ~al~~-----~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~P~~~~~~---~~l~~~~~~~~~~~~~~  406 (473)
                      ++|++     .|+   -...++++|.+|..+|+|++|+..|++|+.+     -|+++.+.   ..|..++..++.+++++
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99976     344   4578999999999999999999999999985     57776654   45556665555555544


Q ss_pred             HHHHHHH
Q psy4385         407 KQVYANM  413 (473)
Q Consensus       407 k~~~~~~  413 (473)
                      . +|+++
T Consensus       456 ~-~~~~~  461 (490)
T 3n71_A          456 F-MYHKM  461 (490)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHHH
Confidence            3 44444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.01  E-value=3.9e-09  Score=86.36  Aligned_cols=98  Identities=20%  Similarity=0.261  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE---KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN---KAAVQKLT  393 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~  393 (473)
                      .++++|.+++..|+|++|+..+++++..+|++.   .+++.+|.++..+|+|++|+..|++++..+|++   ..++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578999999999999999999999999999998   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         394 QTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       394 ~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      .+...+++..++ ...|.++.....
T Consensus        84 ~~~~~~g~~~~A-~~~~~~~~~~~p  107 (129)
T 2xev_A           84 LSQYGEGKNTEA-QQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHTTCHHHH-HHHHHHHHHHST
T ss_pred             HHHHHcCCHHHH-HHHHHHHHHHCC
Confidence            998877665544 345666665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.01  E-value=2.1e-09  Score=88.11  Aligned_cols=100  Identities=20%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      +.....++++|.+++..++|++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy4385         395 TKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       395 ~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +...+++..++. ..+.+.+.
T Consensus        93 ~~~~~~~~~~A~-~~~~~~~~  112 (133)
T 2lni_A           93 ALEAMKDYTKAM-DVYQKALD  112 (133)
T ss_dssp             HHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHhhHHHHH-HHHHHHHH
Confidence            988776655443 34555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.01  E-value=8.3e-10  Score=115.19  Aligned_cols=165  Identities=10%  Similarity=0.041  Sum_probs=96.5

Q ss_pred             ccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC------------Chh-------H
Q psy4385         249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF------------EGE-------Q  309 (473)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------~~~-------~  309 (473)
                      .+++.+...+.......+.....+..+|..+.+.|++++|+..|++++...+.....            ..+       .
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS  466 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444444444443333333456678888888999999999999999888654431110            000       0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         310 ETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------EPNN-EKAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       310 ~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                      .....|.+..++++++.++.+.|++++|+..+++++++      +|++ ..+|+.+|.+|...|++++|+..|+++++++
T Consensus       467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            01122334555666666666666666666666666665      4443 5566666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         383 PNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       383 P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      |++..++..++.++...++..++ ...|++++
T Consensus       547 p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l  577 (597)
T 2xpi_A          547 TNDANVHTAIALVYLHKKIPGLA-ITHLHESL  577 (597)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence            66666666666666555444332 23444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.01  E-value=9e-10  Score=92.38  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhhC-C-CCHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDKAIELE-P-NNEKAFF  356 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~-p-~~~ka~~  356 (473)
                      ......+.+.|.+.+.               ..+....+.+++|.|+.+.+   ++.+++..++.+++.+ | ++..++|
T Consensus        11 ~~~l~~~~~~y~~e~~---------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY   75 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA---------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVF   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHH---------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc---------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence            3445667777777763               22345779999999999998   6779999999999999 7 6789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++|.+|+++++|++|+++++++|+++|+|..+......+..++
T Consensus        76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988777776554

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.00  E-value=9.2e-10  Score=88.36  Aligned_cols=81  Identities=20%  Similarity=0.383  Sum_probs=69.1

Q ss_pred             CCCCCCCeEEEEEEeeeCCeEEEec---eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec-CCCCCCCCCCCCCCC
Q psy4385         161 STPKDGANVEITLKGECEGKVFQEG---TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ-PQHLWSGKGNDKLGV  236 (473)
Q Consensus       161 ~~p~~~~~v~~~~~g~~~g~~~~~~---~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~-~~~~~~~~g~~~~~i  236 (473)
                      ..|..|+.|+++|.|+++|++|++.   ++.|.+|.+.   +++||+.+|..|+.|++..+.++ |.. |+..+.     
T Consensus        28 ~~~~~gD~V~v~Y~g~~dG~~fdss~~~p~~f~lG~g~---vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~-----   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNS---FIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL-----   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEETTEECSTTCCSEEEEEETSSC---SCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-----
T ss_pred             CCCCCCCEEEEEEEEEECCEEcccCCccCEEEEECCCC---hhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-----
Confidence            4678899999999999999999974   8999999887   99999999999999999999996 444 776542     


Q ss_pred             CCCCCceeeeeeccc
Q psy4385         237 PSNKPATYTITMNNF  251 (473)
Q Consensus       237 p~~~~~~y~i~L~~~  251 (473)
                       +++.+.|++.|.++
T Consensus        99 -~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 -QSKPVTFEVVLKAI  112 (113)
T ss_dssp             -GSCCCEEEEEECCB
T ss_pred             -CCCEEEEEEEEEEE
Confidence             45789999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.00  E-value=4.1e-10  Score=111.19  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=97.0

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..+...|+|++|+..|++|+.+.+..         ...+....++.|+|.+|..+|+|++|+.+++++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45567889999999999999999999999999775532         113456779999999999999999999999999


Q ss_pred             hh-----hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         345 IE-----LE-PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       345 l~-----~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      ++     .+ |..+.+++++|.+|..+|++++|+..|++++.+.+
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99     46 88889999999999999999999999999999854

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=2.8e-09  Score=100.84  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|.+|+..|++++.+......       ...+....++.++|.++..+|++++|+..+++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455778889999999999999999999999955321000       0025678899999999999999999999999999


Q ss_pred             hh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         346 EL--------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       346 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      .+        +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7777889999999999999999999999999985

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=4.3e-09  Score=83.97  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      .+..++++|.+++..++|+.|+..+++++..+|.++.+++.+|.++..+|++++|+..+++++.++|++..++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy4385         397 QKLREQKIKEKQVYANMF  414 (473)
Q Consensus       397 ~~~~~~~~~~k~~~~~~f  414 (473)
                      ..+++..+.. ..+.+..
T Consensus        83 ~~~~~~~~A~-~~~~~~~   99 (118)
T 1elw_A           83 EFLNRFEEAK-RTYEEGL   99 (118)
T ss_dssp             HHTTCHHHHH-HHHHHHH
T ss_pred             HHHhhHHHHH-HHHHHHH
Confidence            8776555443 3444444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.98  E-value=2.9e-09  Score=100.74  Aligned_cols=143  Identities=22%  Similarity=0.253  Sum_probs=116.1

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..++..|+|++|+..|++++.+......       ...+....++.++|.++..+|++++|+..+.++
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  137 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA  137 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            3456778899999999999999999999999965421000       003667889999999999999999999999999


Q ss_pred             hhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELE--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI--------DPNNKAAVQKLTQTKQKLREQKIKEKQ  408 (473)
Q Consensus       345 l~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~k~  408 (473)
                      +.+.        |....+++++|.++..+|++++|+..|++++.+        +|....++..++.+...+++..++. .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~  216 (311)
T 3nf1_A          138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE-T  216 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-H
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH-H
Confidence            9884        566789999999999999999999999999998        6666778888898888776665443 3


Q ss_pred             HHHHHhh
Q psy4385         409 VYANMFD  415 (473)
Q Consensus       409 ~~~~~f~  415 (473)
                      .+.+++.
T Consensus       217 ~~~~al~  223 (311)
T 3nf1_A          217 LYKEILT  223 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.98  E-value=5.3e-10  Score=95.71  Aligned_cols=100  Identities=15%  Similarity=0.191  Sum_probs=87.5

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|.+|+..|.+++               .+.|....+++++|.++..+|++++|+..+.+++.
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAI---------------ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK  109 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            446788899999999999999999999999               44555678999999999999999999999999999


Q ss_pred             hCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         347 LEPNNEKAFFRR--GNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       347 ~~p~~~ka~~~~--g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      ++|.+..++..+  +..+...|++++|+..+.++..+
T Consensus       110 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          110 VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999888554  45588899999999999877654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=7.6e-10  Score=106.01  Aligned_cols=116  Identities=9%  Similarity=-0.039  Sum_probs=82.8

Q ss_pred             CchhHHHhhHHHHhhcchhhh-------cccH-------HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFK-------QDKF-------ELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM  326 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~-------~~~~-------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  326 (473)
                      .....+..+..+...|..+..       .|++       ++|+..|++|+..              +.|.+..+|.++|.
T Consensus        42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------~~p~~~~~~~~~~~  107 (308)
T 2ond_A           42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------LLKKNMLLYFAYAD  107 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--------------TTTTCHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--------------hCcccHHHHHHHHH
Confidence            334444556667777766653       4664       9999999999962              23344667778888


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEK-AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      ++.++|++++|+..|+++++++|.++. +|+++|.++...|++++|+..|++|++++|.+..++.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  172 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            888888888888888888888877775 7777777777777777777777777777776655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.97  E-value=2.4e-09  Score=105.49  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..++..|++..|+..|.+|+.+.+....        ..+..+.+++++|.++..+|+|++|+.++.+|
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3566888999999999999999999999999977654211        12356789999999999999999999999999


Q ss_pred             hhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEP------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ-----IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       345 l~~~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~-----l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      +.+.+      ....+++++|.+|..+|++++|+..|++++.     .+|....+...++.+...+++..++ ...+++.
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a  287 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA-FQFIEEG  287 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence            98743      2346899999999999999999999999999     7888888889999998887666544 3455555


Q ss_pred             hhhhc
Q psy4385         414 FDKFA  418 (473)
Q Consensus       414 f~~~~  418 (473)
                      +....
T Consensus       288 l~~~~  292 (378)
T 3q15_A          288 LDHIT  292 (378)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            55443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.97  E-value=1.1e-08  Score=83.06  Aligned_cols=104  Identities=22%  Similarity=0.248  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      ...+.....++.+|.+++..++++.|+..+++++..+|.++.+++.+|.++..+|++++|+..|.+++.++|++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++.+...+++..+.. ..+.+.+..
T Consensus        86 ~~~~~~~~~~~~~A~-~~~~~~~~~  109 (131)
T 2vyi_A           86 MGLALSSLNKHVEAV-AYYKKALEL  109 (131)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHH-HHHHHHHhc
Confidence            999988776655443 345555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=2.3e-09  Score=111.52  Aligned_cols=124  Identities=9%  Similarity=0.007  Sum_probs=114.2

Q ss_pred             CchhHHHhhHHHHhhcchhhhccc----------HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQDK----------FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK  330 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k  330 (473)
                      .....++...++..+|..+...++          |++|+..|.+++               ..+|.+..+|++++.++.+
T Consensus        55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l---------------~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL---------------RVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHH
Confidence            345556677889999999998888          999999999999               7778889999999999999


Q ss_pred             cC--ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         331 LK--QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN-EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       331 l~--~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++  +|++|+..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+|..++..++.+...+
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99  6799999999999999999999999999999999 999999999999999999999999999888775

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=1.4e-09  Score=103.42  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|++|+..|++|+.......        ...+....+++|+|.+|.++|+|++|+.+++++++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3466789999999999999999999999997654321        12456678999999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLN-EPELAEKDFQKVLQID  382 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~  382 (473)
                      +.+..      ..+|+++|.+|..+| .+++|+.+|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            86543      789999999999999 5799999999999763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.96  E-value=9.9e-10  Score=108.30  Aligned_cols=110  Identities=13%  Similarity=0.028  Sum_probs=97.2

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|++|+..|.+|+.+....         ........++.|+|.+|..+|++++|+.++++++
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999765421         1123567899999999999999999999999999


Q ss_pred             h-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         346 E-----LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       346 ~-----~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      .     .+|..+.+++++|.+|..+|++++|+..+++++.+.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9     78888999999999999999999999999999999653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.96  E-value=3.7e-09  Score=101.23  Aligned_cols=109  Identities=14%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.++|..+.. |+|++|+.+|++|+.+.+...         .......++.++|.+|.++|+|++|+.+|++++.
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE---------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC---------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            346677788888887 888888888888886554210         0123467889999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +.|.+      ..+++++|.+++.+|++++|+..|++++ ++|+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            86544      3478888999999999999999999999 998754

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=98.95  E-value=2.1e-09  Score=91.19  Aligned_cols=66  Identities=23%  Similarity=0.503  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEEEeeeCCeEEEe------------------ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCC
Q psy4385         163 PKDGANVEITLKGECEGKVFQE------------------GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQH  224 (473)
Q Consensus       163 p~~~~~v~~~~~g~~~g~~~~~------------------~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~  224 (473)
                      ...|+.|++||+|+++|++||+                  .|+.|.+|.+.   +++||+.||..|+.||+..+.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~---vi~G~eeaL~gm~~Ge~~~v~Ipp~~   78 (157)
T 3pr9_A            2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQ---VLPGLDEAILEMDVGEEREVVLPPEK   78 (157)
T ss_dssp             CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSS---SCHHHHHHHHHCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCc---HHHHHHHHHcCCCCCCEEEEEECcHH
Confidence            3578999999999999999996                  37899999987   99999999999999999999999999


Q ss_pred             CCCCCCC
Q psy4385         225 LWSGKGN  231 (473)
Q Consensus       225 ~~~~~g~  231 (473)
                      +||..+.
T Consensus        79 aYG~~~~   85 (157)
T 3pr9_A           79 AFGKRDP   85 (157)
T ss_dssp             TTCCCCG
T ss_pred             hcCCCCh
Confidence            9997654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=1.1e-09  Score=104.96  Aligned_cols=137  Identities=10%  Similarity=0.029  Sum_probs=104.3

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.+.|..+...|+|++|+.+|++|+.+.....         .......++.++|.+|.. |+|++|+.+|++|+.
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g---------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG---------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            4467888999999999999999999999997654311         012346789999999999 999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK------AAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +.|..      ..+++++|.+|..+|+|++|+..|++++.+.|++.      .++..++.+...+++..+ ....|++.+
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-A~~~~~~al  222 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA-AQKCVRESY  222 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHh
Confidence            87653      57899999999999999999999999999976543      234444555544443333 333445444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=4.7e-09  Score=93.03  Aligned_cols=140  Identities=15%  Similarity=0.120  Sum_probs=108.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|++|+..|.+++.+.....         ..+....++.++|.++..+|++++|+.++.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---------DHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467888999999999999999999999997655321         24567889999999999999999999999999988


Q ss_pred             ---CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         348 ---EP----NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN--NK----AAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       348 ---~p----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~--~~----~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                         .+    ....+++++|.++..+|++++|+..+++++.+.+.  +.    .++..++.+....++..+.. ..+.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  174 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ-QHWLRAR  174 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH-HHHHHHH
Confidence               33    33577999999999999999999999999977432  22    23466777776665554433 3444444


Q ss_pred             hhh
Q psy4385         415 DKF  417 (473)
Q Consensus       415 ~~~  417 (473)
                      ...
T Consensus       175 ~~~  177 (203)
T 3gw4_A          175 DIF  177 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=4.6e-09  Score=99.31  Aligned_cols=97  Identities=18%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +..+.++|.++++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy4385         398 KLREQKIKEKQVYANMFD  415 (473)
Q Consensus       398 ~~~~~~~~~k~~~~~~f~  415 (473)
                      .+++..++.. .|.+.+.
T Consensus        84 ~~g~~~~A~~-~~~~al~  100 (281)
T 2c2l_A           84 EMESYDEAIA-NLQRAYS  100 (281)
T ss_dssp             HTTCHHHHHH-HHHHHHH
T ss_pred             HcCCHHHHHH-HHHHHHH
Confidence            8876665543 4444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=1.5e-10  Score=118.08  Aligned_cols=118  Identities=13%  Similarity=0.169  Sum_probs=97.2

Q ss_pred             ccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC
Q psy4385         253 KIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK  332 (473)
Q Consensus       253 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~  332 (473)
                      ++...+.......+..+..+..+|..+++.|+|++|+..|++|+               +++|....+++++|.+|..+|
T Consensus        24 ~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------~l~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           24 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---------------ELDKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HSCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcC
Confidence            33333333344445567889999999999999999999999999               445566889999999999999


Q ss_pred             ChhHHHHHHHHHhhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCC
Q psy4385         333 QAKPAKDQCDKAIELEPNNEKAFFRRGNA--YLDLNEPELAEKDFQ-----------KVLQIDPNN  385 (473)
Q Consensus       333 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a--~~~lg~~~~A~~~~~-----------~al~l~P~~  385 (473)
                      +|++|+..++++++++|++..+++.++.+  +..+|+|++|+..++           +++.++|+.
T Consensus        89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999999999999  899999999999999           899888865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.90  E-value=1.1e-08  Score=95.58  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         318 TACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       318 ~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                      +.+++++|.+|..    .+++++|+..++++++.+  ++.+++++|.+|..    .+++++|+..|+++++++  +..++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC  149 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence            4555555555555    555555555555555542  45555555555555    555555555555555543  34445


Q ss_pred             HHHHHHHHH
Q psy4385         390 QKLTQTKQK  398 (473)
Q Consensus       390 ~~l~~~~~~  398 (473)
                      ..++.+...
T Consensus       150 ~~lg~~~~~  158 (273)
T 1ouv_A          150 TILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.90  E-value=4.7e-09  Score=104.04  Aligned_cols=125  Identities=14%  Similarity=0.051  Sum_probs=108.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|+|.+|+..|++++...+..           ......+++++|.++..+|+|++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-----------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-----------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567788899999999999999999999999764321           12345789999999999999999999999999


Q ss_pred             hh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHH
Q psy4385         346 EL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI------DPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       346 ~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~~~~  401 (473)
                      ++      +|....+++++|.+|..+|++++|+..|.+++.+      .|....++..++.+...+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            98      6778899999999999999999999999999999      55556678888888887776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.5e-08  Score=84.62  Aligned_cols=100  Identities=16%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      .....++.+|.+++..++|++|+..++++++++|++   ..+++++|.+|..+++|++|+..|++++.++|++..++..+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            346788999999999999999999999999999998   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         393 TQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       393 ~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      +.+...+++..++ ...|.+.+..
T Consensus       106 a~~~~~~~~~~~A-~~~~~~al~~  128 (148)
T 2dba_A          106 SQALEKLGRLDQA-VLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHc
Confidence            9998887665544 3455555543

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=98.90  E-value=3.9e-09  Score=90.46  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             CCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGN  231 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~  231 (473)
                      .+..++.|++||.|++ +|++||+     .|+.|.+|.+.   +++||+.||..|+.||+..|.|+|.++||....
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~---vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDAS---LSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSS---SCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCC---ccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            6789999999999998 9999997     48999999987   999999999999999999999999999997543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.89  E-value=2.1e-08  Score=80.65  Aligned_cols=98  Identities=28%  Similarity=0.377  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ..+++++|.++...+++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|.+..++..++.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy4385         398 KLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       398 ~~~~~~~~~k~~~~~~f~~  416 (473)
                      ..++..+. ...+.+++..
T Consensus        89 ~~~~~~~A-~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEA-IEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHH-HHHHHHHHHH
T ss_pred             HhcCHHHH-HHHHHHHHHh
Confidence            76555443 3455555543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.88  E-value=4.4e-09  Score=100.64  Aligned_cols=134  Identities=12%  Similarity=0.043  Sum_probs=101.8

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTA-CHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      +.....+...|..+...|++++|...|++++.+.+.               ... +|.++|.++.++|++++|+..|++|
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS---------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc---------------CccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            345667888999999999999999999999965432               233 7888888888888888888888888


Q ss_pred             hhhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         345 IELEPNNEKAFFRRGNAYL-DLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~-~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      ++.+|.+..+|...+.... .+|++++|+..|+++++++|++..++..+..+...+++.. ..+..|.+...
T Consensus       161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~  231 (308)
T 2ond_A          161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERVLT  231 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHh
Confidence            8888888877776665543 3688888888888888888888888877777765554333 33445555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.87  E-value=1.1e-08  Score=83.28  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN-------KAAV  389 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~-------~~~~  389 (473)
                      .+..++++|.+++..++|+.|+..+.+++..+|.++.+++++|.+|..+|++++|+..|.+++.++|++       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            466889999999999999999999999999999999999999999999999999999999999999887       8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         390 QKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       390 ~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ..++.+...+++..++ ...|.+++..
T Consensus        83 ~~la~~~~~~~~~~~A-~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDA-IHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHH-HHHHHHHHHh
Confidence            8999988877665544 3456666553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.87  E-value=1.1e-08  Score=100.59  Aligned_cols=142  Identities=18%  Similarity=0.139  Sum_probs=113.9

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..++..|+|++|+..|++++.+.+...         ..+....++.++|.++..+|++++|+.+++++
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---------DKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC---------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            344567888999999999999999999999997655321         12345669999999999999999999999999


Q ss_pred             hhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYAN  412 (473)
Q Consensus       345 l~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~  412 (473)
                      +.+.+..      ..+++++|.+|..+|++++|+..|++++.+.+..      ..++..++.+...+++..++. ..+.+
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~  332 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM-HFAEK  332 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence            9987765      7899999999999999999999999999986644      456778888887776555443 34454


Q ss_pred             Hhhh
Q psy4385         413 MFDK  416 (473)
Q Consensus       413 ~f~~  416 (473)
                      .+..
T Consensus       333 al~~  336 (406)
T 3sf4_A          333 HLEI  336 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.86  E-value=1.3e-08  Score=95.23  Aligned_cols=104  Identities=11%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKK-TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE-  348 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-  348 (473)
                      .++.+|..+++.++|.+|+..|++++.+.              ++ ....+++++|.++..+|++++|+.+|++++.-. 
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~  202 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA  202 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Confidence            44455555555555555555555444221              01 112345555555555555555555555555332 


Q ss_pred             -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy4385         349 -PN-NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAV  389 (473)
Q Consensus       349 -p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~  389 (473)
                       |. .+.+++++|.|+..+|+.++|...|++++..+|+ ..+.
T Consensus       203 ~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          203 GEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence             33 3345555555555555555555555555555555 4433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.86  E-value=2.2e-09  Score=102.34  Aligned_cols=127  Identities=8%  Similarity=-0.036  Sum_probs=111.3

Q ss_pred             CchhHHHhhHHHHhhcchh----hhc---ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy4385         261 NSDEKLEQGKLLKERGTTY----FKQ---DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ  333 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~----~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~  333 (473)
                      .....++....+..++..+    ...   +++.+++..+.+++               ..+|.+..++++++.+..+++.
T Consensus        95 ~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l---------------~~~pkny~aW~~R~~vl~~l~~  159 (306)
T 3dra_A           95 IALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML---------------SSDPKNHHVWSYRKWLVDTFDL  159 (306)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhcc
Confidence            3344455666777777777    555   78899999999999               7778889999999999999999


Q ss_pred             hh--HHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         334 AK--PAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       334 ~~--~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      ++  ++++.|+++++.||.|..||..|+.++..++.      ++++++++.+++.++|+|..++..++.+....+..
T Consensus       160 ~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~  236 (306)
T 3dra_A          160 HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS  236 (306)
T ss_dssp             TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred             cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence            99  99999999999999999999999999999998      99999999999999999999999999888776543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=1.1e-08  Score=92.29  Aligned_cols=83  Identities=13%  Similarity=-0.008  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCC--CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q psy4385         315 KTLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEP--NNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       315 ~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~  384 (473)
                      +.++.+++++|.+|..    .+++.+|+.++.++++.+|  .++.+++++|.+|..    .+++++|+..|++|+++ |.
T Consensus        82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~  160 (212)
T 3rjv_A           82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR  160 (212)
T ss_dssp             TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC
T ss_pred             CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC
Confidence            3456677778877776    7778888888888887776  347778888888877    77788888888888777 55


Q ss_pred             CHHHHHHHHHHHHH
Q psy4385         385 NKAAVQKLTQTKQK  398 (473)
Q Consensus       385 ~~~~~~~l~~~~~~  398 (473)
                      +..+...|+.++..
T Consensus       161 ~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          161 TGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHc
Confidence            66677777776643

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=98.84  E-value=3.7e-09  Score=89.48  Aligned_cols=66  Identities=18%  Similarity=0.485  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec------------------eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG------------------TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQ  223 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~------------------~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~  223 (473)
                      +..|+.|++||+|++ +|++||+.                  |+.|.+|.+.   +++||+.||..|+.|++..+.+||.
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~---vi~G~eeaL~gm~~Ge~~~v~ipp~   78 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQ---LIQGFEEAVLDMEVGDEKTVKIPAE   78 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTC---SCHHHHHHHHTCCTTCCCEEEECTT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCC---hhHHHHHHHcCCCCCCEEEEEECcH
Confidence            567899999999999 99999874                  6899999987   9999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy4385         224 HLWSGKGN  231 (473)
Q Consensus       224 ~~~~~~g~  231 (473)
                      .+||..+.
T Consensus        79 ~aYG~~~~   86 (151)
T 1ix5_A           79 KAYGNRNE   86 (151)
T ss_dssp             TSSCSCCS
T ss_pred             HHCCCCCc
Confidence            99997654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.84  E-value=3.5e-09  Score=107.10  Aligned_cols=107  Identities=21%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--------------
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--------------  331 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--------------  331 (473)
                      +.....+..+|..+...|++.+|+..|++|+               +..|....++.++|.||...              
T Consensus       244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~  308 (472)
T 4g1t_A          244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL---------------EYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG  308 (472)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH---------------HhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3456678889999999999999999999999               55666677888888887543              


Q ss_pred             -----CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         332 -----KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       332 -----~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                           ..++.|+..+.+++.++|.+..+++++|.+|..+|+|++|+..|++++.++|++..
T Consensus       309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence                 34678889999999999999999999999999999999999999999998887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.83  E-value=9.5e-09  Score=87.10  Aligned_cols=72  Identities=18%  Similarity=0.295  Sum_probs=67.2

Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP----------ELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      -++++|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++..++..++.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          599999999999999999999999999987


Q ss_pred             HH
Q psy4385         399 LR  400 (473)
Q Consensus       399 ~~  400 (473)
                      +.
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.83  E-value=8.4e-08  Score=90.90  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=106.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ......+...+..++..|+|++|+..|.+++...+..         .........++++|.++...++|++|+.++.+++
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  142 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---------PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL  142 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---------HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            3455677788999999999999999999999764421         2223455667889999999999999999999999


Q ss_pred             hhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVL---QIDPNNK----AAVQKLTQTKQKLREQKIKE  406 (473)
Q Consensus       346 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al---~l~P~~~----~~~~~l~~~~~~~~~~~~~~  406 (473)
                      .+.+..      ..+++++|.+|..+|+|++|+..|++|+   +..|++.    .++..++.+...+++..++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence            876543      5689999999999999999999999999   5566654    47788888887776666544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.82  E-value=4.6e-09  Score=104.07  Aligned_cols=140  Identities=16%  Similarity=0.161  Sum_probs=110.5

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|++|+..|++++.+.+..         ........++.++|.+++.+|++++|+.++++++.
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---------GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            445688899999999999999999999999665421         11223456899999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      +.+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..++..++.++..+++..++. ..|++.+
T Consensus       292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  370 (411)
T 4a1s_A          292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL-KYAEQHL  370 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            87754      6889999999999999999999999999986543      346777888877766554433 3444444


Q ss_pred             hh
Q psy4385         415 DK  416 (473)
Q Consensus       415 ~~  416 (473)
                      .-
T Consensus       371 ~~  372 (411)
T 4a1s_A          371 QL  372 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=98.82  E-value=9.6e-09  Score=92.47  Aligned_cols=66  Identities=23%  Similarity=0.503  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEEEeeeCCeEEEe------------------ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCC
Q psy4385         163 PKDGANVEITLKGECEGKVFQE------------------GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQH  224 (473)
Q Consensus       163 p~~~~~v~~~~~g~~~g~~~~~------------------~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~  224 (473)
                      ...|+.|++||+|+++|++||+                  .|+.|.+|.+.   +++||+.||..|+.|++..+.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~---vIpG~eeaL~Gm~vGek~~v~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQ---VLPGLDEAILEMDVGEEREVVLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEETTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSS---SCHHHHHHHHTCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEECCEEEEeccchhcccccccccccCCCCEEEEeCCCc---HHHHHHHHHcCCCCCCEEEEEeCcHH
Confidence            3578999999999999999996                  26899999987   99999999999999999999999999


Q ss_pred             CCCCCCC
Q psy4385         225 LWSGKGN  231 (473)
Q Consensus       225 ~~~~~g~  231 (473)
                      +||..+.
T Consensus        79 AYGe~~~   85 (231)
T 3prb_A           79 AFGKRDP   85 (231)
T ss_dssp             TTCCCCG
T ss_pred             hcCCCCh
Confidence            9998653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.82  E-value=1.2e-08  Score=97.39  Aligned_cols=125  Identities=9%  Similarity=-0.080  Sum_probs=112.5

Q ss_pred             CchhHHHhhHHHHhhcchhhhcc--cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH----HHc---
Q psy4385         261 NSDEKLEQGKLLKERGTTYFKQD--KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL----LKL---  331 (473)
Q Consensus       261 ~~~~~~~~a~~~~~~G~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~kl---  331 (473)
                      .....++...++..+|..+...+  ++.+|+..+.+++               ..+|.+..+++.++.++    ..+   
T Consensus        59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L---------------~~nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA---------------LDNEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---------------HHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH---------------HHCcccHHHHHHHHHHHHHHHHhcccc
Confidence            34445567788899999999888  9999999999999               67777889999999999    777   


Q ss_pred             CChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPE--LAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       332 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~--~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      +++++++..|+++++.+|.|..+|+.|+.++..++.++  ++++.+.++++.+|.|-.++.....+...+.
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            79999999999999999999999999999999999999  9999999999999999999988888776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.81  E-value=3.2e-09  Score=85.95  Aligned_cols=77  Identities=14%  Similarity=0.087  Sum_probs=70.1

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+..+|..++..|+|++|+..|++++               .+.|.+..+++++|.|+.++|++++|+..+.++
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGV---------------KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678899999999999999999999999999               556667889999999999999999999999999


Q ss_pred             hhhCCCCHHHHH
Q psy4385         345 IELEPNNEKAFF  356 (473)
Q Consensus       345 l~~~p~~~ka~~  356 (473)
                      +..+|+++....
T Consensus        88 l~~~p~~~~~~~   99 (117)
T 3k9i_A           88 IAETSDDETIQS   99 (117)
T ss_dssp             HHHHCCCHHHHH
T ss_pred             HHhCCCcHHHHH
Confidence            999999987653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.81  E-value=1.3e-08  Score=85.90  Aligned_cols=109  Identities=20%  Similarity=0.206  Sum_probs=91.7

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|++|+..|++++.+.+...         ..+....++.++|.++..++++++|+..+++++.
T Consensus        47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456888999999999999999999999997655321         1234577899999999999999999999999998


Q ss_pred             hCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         347 LEP------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       347 ~~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +.+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            742      23578999999999999999999999999987554

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=98.81  E-value=1.4e-08  Score=85.85  Aligned_cols=68  Identities=18%  Similarity=0.224  Sum_probs=62.0

Q ss_pred             CCCCCCCeEEEEEEeee--CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCC
Q psy4385         161 STPKDGANVEITLKGEC--EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGN  231 (473)
Q Consensus       161 ~~p~~~~~v~~~~~g~~--~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~  231 (473)
                      ..+..++.|++||+|+.  +|++|++.    |+.|.+|.+.   +++||+.||..|+.|++..+.++|..+||..+.
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~---vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQ---IIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCC---SCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCC---ccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            45678999999999998  89999984    7999999987   999999999999999999999999999997654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.81  E-value=1.3e-08  Score=96.79  Aligned_cols=122  Identities=19%  Similarity=0.088  Sum_probs=102.3

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  347 (473)
                      +..+...|..++..|+|++|+..|++++...+..           ......++.++|.++..+|++++|+..+++++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            4567778999999999999999999999764321           2234678999999999999999999999999988 


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHH
Q psy4385         348 -----EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK------AAVQKLTQTKQKLRE  401 (473)
Q Consensus       348 -----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~  401 (473)
                           .|..+.+++.+|.+|..+|++++|+..|.+++.+.|...      .++..++.+...+++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                 556678999999999999999999999999999876432      367777877777666

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.79  E-value=2.2e-08  Score=95.22  Aligned_cols=140  Identities=17%  Similarity=0.122  Sum_probs=111.0

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+..+|..++..|++++|+..|++++.+.+..         ........++.++|.++..+|++++|+..+++++
T Consensus       180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456678899999999999999999999999665421         1133456689999999999999999999999999


Q ss_pred             hhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         346 ELEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       346 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      .+.+..      ..+++.+|.++..+|++++|+..|++++.+.|..      ..++..++.+...+++..++. ..+.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  329 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  329 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Confidence            887665      7889999999999999999999999999986543      336667777777765554433 344444


Q ss_pred             hh
Q psy4385         414 FD  415 (473)
Q Consensus       414 f~  415 (473)
                      +.
T Consensus       330 ~~  331 (338)
T 3ro2_A          330 LE  331 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=1.5e-08  Score=91.45  Aligned_cols=112  Identities=12%  Similarity=0.009  Sum_probs=99.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC----ChhHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK----QAKPAKDQCD  342 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~----~~~~A~~~~~  342 (473)
                      ..+.++..+|..++..+++.+|+..|++|+..                 .++.+++++|.+|.. +    ++++|+.++.
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----------------GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            45778999999999999999999999999832                 347899999999998 7    8999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy4385         343 KAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPN--NKAAVQKLTQTKQK  398 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~  398 (473)
                      ++++  +.++.+++++|.+|..    .+++++|+..|+++++..|.  ++.+...|+.++..
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9965  5799999999999998    99999999999999999883  58889999998865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.79  E-value=5.1e-09  Score=108.88  Aligned_cols=132  Identities=11%  Similarity=-0.041  Sum_probs=115.6

Q ss_pred             ccccccccCchhHHHhhHHHHhhcchhhhcc--cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         253 KIKDTWQLNSDEKLEQGKLLKERGTTYFKQD--KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK  330 (473)
Q Consensus       253 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k  330 (473)
                      ++...++......++...++..+|..+.+.+  +|++|+..|.+++               ++++.+..+|.+++.+..+
T Consensus        91 ~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l---------------~~d~~N~~aW~~R~~~l~~  155 (567)
T 1dce_A           91 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL---------------EADERNFHCWDYRRFVAAQ  155 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH---------------hhccccccHHHHHHHHHHH
Confidence            3334444445556677888999999999999  7799999999999               7778889999999999999


Q ss_pred             cC-ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy4385         331 LK-QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDL--------------NEPELAEKDFQKVLQIDPNNKAAVQKLTQT  395 (473)
Q Consensus       331 l~-~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l--------------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~  395 (473)
                      ++ .+++++++++++++.+|.|..||+.|+.++..+              +.+++|++++.+|+.++|+|..++..++-+
T Consensus       156 l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          156 AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99 999999999999999999999999999999886              568999999999999999999999988877


Q ss_pred             HHHH
Q psy4385         396 KQKL  399 (473)
Q Consensus       396 ~~~~  399 (473)
                      ....
T Consensus       236 l~~~  239 (567)
T 1dce_A          236 LGRA  239 (567)
T ss_dssp             HSCC
T ss_pred             HhcC
Confidence            6543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.79  E-value=4.5e-08  Score=91.43  Aligned_cols=126  Identities=12%  Similarity=0.080  Sum_probs=85.3

Q ss_pred             hHHHHhhcchhhh----cccHHHHHHHHHHHhhhhcC----------CC----CCChhH-----HHHHHHHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFK----QDKFELACRNYKKAIPYLDF----------DG----GFEGEQ-----ETERKKTLTACHLNAA  325 (473)
Q Consensus       269 a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~----------~~----~~~~~~-----~~~~~~~~~~~~~nla  325 (473)
                      +..+..+|..++.    .+++++|+..|++++.....          ..    ..+.+.     ...+......+++++|
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg  117 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG  117 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence            3455566666666    66666666666666644210          00    001010     1112223567888888


Q ss_pred             HHHHH----cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         326 MCLLK----LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       326 ~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      .+|..    .+++++|+.+++++++.+  ++.+++++|.+|..    .+++++|+..|+++++.  ++..++..++.+..
T Consensus       118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  193 (273)
T 1ouv_A          118 GIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYH  193 (273)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            88888    888888888888888876  67888888888888    88888888888888876  35677778888776


Q ss_pred             H
Q psy4385         398 K  398 (473)
Q Consensus       398 ~  398 (473)
                      .
T Consensus       194 ~  194 (273)
T 1ouv_A          194 H  194 (273)
T ss_dssp             H
T ss_pred             c
Confidence            6

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=98.79  E-value=1.9e-08  Score=85.50  Aligned_cols=78  Identities=21%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCCCCCc
Q psy4385         163 PKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPA  242 (473)
Q Consensus       163 p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~  242 (473)
                      +..++.|++||+|+.+|++|++..+.|.+|.+.   +++||+.||..|+.|++..+.++|..+||..+.         .+
T Consensus         3 i~~gd~V~v~Y~g~~dG~~fdss~~~f~~G~g~---vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~---------~l   70 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRN---LIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP---------EG   70 (158)
T ss_dssp             CCTTEEEEEEEEEEETTEEEEEEEEEEETTSSS---SCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG---------GG
T ss_pred             CCCCCEEEEEEEEEECCEEEEeeEEEEEECCCC---cChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc---------ce
Confidence            467899999999998999999988999999887   999999999999999999999999999997643         34


Q ss_pred             eeeeeecccc
Q psy4385         243 TYTITMNNFE  252 (473)
Q Consensus       243 ~y~i~L~~~~  252 (473)
                      .+.+.+..|.
T Consensus        71 v~~v~~~~f~   80 (158)
T 3cgm_A           71 VQVVPLSAFP   80 (158)
T ss_dssp             EEEEEGGGSC
T ss_pred             EEEEEHHHCC
Confidence            5555555553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.78  E-value=1.8e-08  Score=99.09  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             HhhHHHHhhcchhhhccc--------------------HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy4385         267 EQGKLLKERGTTYFKQDK--------------------FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM  326 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~--------------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  326 (473)
                      ..+..+..+|..++..|+                    |.+|+..|.+++.+....         ...+....++.++|.
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~la~  195 (406)
T 3sf4_A          125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---------GDRAAQGRAFGNLGN  195 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------cCcHHHHHHHHHHHH
Confidence            346688899999999999                    999999999999665432         114566789999999


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEK------AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN------KAAVQKLTQ  394 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~k------a~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~  394 (473)
                      ++..+|+|++|+..+++++++.+....      +++++|.+|..+|++++|+..|++++.+.|..      ..++..++.
T Consensus       196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  275 (406)
T 3sf4_A          196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN  275 (406)
T ss_dssp             HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence            999999999999999999998765443      89999999999999999999999999987765      556777777


Q ss_pred             HHHHHHHHHHH
Q psy4385         395 TKQKLREQKIK  405 (473)
Q Consensus       395 ~~~~~~~~~~~  405 (473)
                      +....++..++
T Consensus       276 ~~~~~g~~~~A  286 (406)
T 3sf4_A          276 TYTLLQDYEKA  286 (406)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHhCcHHHH
Confidence            77666555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.77  E-value=1.4e-07  Score=90.56  Aligned_cols=120  Identities=9%  Similarity=0.018  Sum_probs=105.8

Q ss_pred             HHHhhHHHHhhcchhhhccc----------HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC-
Q psy4385         265 KLEQGKLLKERGTTYFKQDK----------FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ-  333 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-  333 (473)
                      .++...++..++..+...+.          +.+++..+..++               ..+|.+..+|++++.++.+++. 
T Consensus        60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L---------------~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL---------------RVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHhccCcc
Confidence            34455667777777765554          788999999998               6777889999999999999994 


Q ss_pred             -hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         334 -AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE-PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       334 -~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                       +++++..|++++++||.|..||+.|+.++..++. +++++.++.++++.+|.|..++..+..+...+
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence             8999999999999999999999999999999999 69999999999999999999999998887776

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.77  E-value=3.2e-08  Score=97.38  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhh----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIE----------------LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~----------------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      .+..+.++|.++++.++|++|+..|++|++                ++|.+..+|+++|.+|+.+++|++|+.+|++|++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            355788999999999999999999999998                7888899999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         381 IDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       381 l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++|++..++..++.++..+++..++. ..|++++..
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~-~~l~~Al~l  336 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEI  336 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHH-HHHHHHHHh
Confidence            99999999999999998887766544 455555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.76  E-value=5.4e-08  Score=97.38  Aligned_cols=118  Identities=12%  Similarity=0.029  Sum_probs=94.4

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+....+.+......|+|++|+..|++++.+....-.       .-+|..+..+.|+|.+|..+|+|++|+.+|+++|++
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i  369 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE-------DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP  369 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC-------hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            3444445555556678999999999999977554222       225677889999999999999999999999999976


Q ss_pred             -----CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHH
Q psy4385         348 -----EP---NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI-----DPNNKAAVQKL  392 (473)
Q Consensus       348 -----~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~~l  392 (473)
                           .|   +-...|+++|.+|..+|+|++|+..|++|+.+     .|+++.+....
T Consensus       370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~  427 (433)
T 3qww_A          370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK  427 (433)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence                 34   44578999999999999999999999999986     57887765533

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.75  E-value=3.9e-08  Score=77.87  Aligned_cols=80  Identities=11%  Similarity=0.012  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELE-------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      +.-++.+|..+++.++|..|+..++.|++..       +..+..++++|.||.++|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567899999999999999999999999863       346788999999999999999999999999999999999877


Q ss_pred             HHHHHHH
Q psy4385         391 KLTQTKQ  397 (473)
Q Consensus       391 ~l~~~~~  397 (473)
                      ++..+..
T Consensus        85 n~~~~~~   91 (104)
T 2v5f_A           85 NLKYFEY   91 (104)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            7764443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.74  E-value=3.5e-08  Score=94.73  Aligned_cols=120  Identities=12%  Similarity=-0.023  Sum_probs=106.7

Q ss_pred             chhHHHhhHHHHhhcchhhhcc--cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC-hhHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQD--KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ-AKPAK  338 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~-~~~A~  338 (473)
                      ....++....+..++..+...+  .|.+++..+.+++               +.+|.+..+|++++.+...++. +++++
T Consensus       101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l---------------~~dprNy~AW~~R~~vl~~l~~~~~eel  165 (331)
T 3dss_A          101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL---------------EADERNFHCWDYRRFVAAQAAVAPAEEL  165 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            3445566778888898888888  4999999999999               7788889999999999999999 59999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDL--------------NEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~l--------------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ++++++++.+|.|..||+.|+.++..+              +.+++++.++.+++.++|+|..++..+.-+.
T Consensus       166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999888              5699999999999999999999997665544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.73  E-value=1.3e-07  Score=91.24  Aligned_cols=125  Identities=12%  Similarity=-0.011  Sum_probs=106.7

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHhhhCCCCHHH
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      .....+.+..++|+..+.++|               .++|.+..+++.++.++..++ .+++++..++++|..+|.+..+
T Consensus        61 r~~~~~~e~se~AL~lt~~~L---------------~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a  125 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIV---------------RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV  125 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHH---------------HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence            333444555678999999999               778888999999999999999 5999999999999999999999


Q ss_pred             HHHHHHHHHhc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q psy4385         355 FFRRGNAYLDL-N-EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK-------IKEKQVYANMFD  415 (473)
Q Consensus       355 ~~~~g~a~~~l-g-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~-------~~~k~~~~~~f~  415 (473)
                      |+.|+.++..+ + ++++++..+.++++++|.|-.++...+-+...+....       ..+-+.+.+++.
T Consensus       126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            99999999998 8 9999999999999999999999998888887776554       244445555543

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=98.72  E-value=5e-08  Score=85.78  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGN  231 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~  231 (473)
                      +..++.|+|+|++++ +|++|++.    |++|.+|.+.   ++++|+.||..|++|++..|.|+|..+||..+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~---vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGS---LISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSS---SCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCC---cchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            567899999999999 99999984    8999999887   999999999999999999999999999997654

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=98.70  E-value=4.1e-08  Score=84.59  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGN  231 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~  231 (473)
                      +..++.|+++|+|++ +|++|++.    |+.|.+|.+.   +++||+.||..|+.|++..|.++|..+||..+.
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~---vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGS---LISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCS---SCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCC---cchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            567899999999999 99999983    7899999887   999999999999999999999999999997643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=5.7e-08  Score=97.30  Aligned_cols=117  Identities=10%  Similarity=-0.065  Sum_probs=93.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh-
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL-  347 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~-  347 (473)
                      +......-..+..+|+|++|+..|++++......-.       .-++..+..+.|+|.+|..+|+|++|+.+|.++|.+ 
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg-------~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~  359 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY  359 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC-------TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC-------ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence            334444455567889999999999999976544322       225667889999999999999999999999999966 


Q ss_pred             ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHH
Q psy4385         348 ----EPN---NEKAFFRRGNAYLDLNEPELAEKDFQKVLQI-----DPNNKAAVQKL  392 (473)
Q Consensus       348 ----~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~~l  392 (473)
                          .|+   -...++++|.+|..+|+|++|+..|++|+++     -|+++.+...+
T Consensus       360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          360 RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence                344   4478999999999999999999999999986     57887665443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.69  E-value=9e-08  Score=74.04  Aligned_cols=71  Identities=20%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHcCC---hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         316 TLTACHLNAAMCLLKLKQ---AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      .++.++..+|.+++..++   ..+|...+++||++||+++.+++.+|.+++..|+|++|+..|+++++.+|.++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            357788999999987776   79999999999999999999999999999999999999999999999999853

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.65  E-value=1.3e-07  Score=74.85  Aligned_cols=83  Identities=13%  Similarity=0.023  Sum_probs=70.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..+|..++|..|+..|++|++........        ......++.++|.|++++|+++.|+..++++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            4567789999999999999999999999776432110        12356789999999999999999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy4385         349 PNNEKAFFRRG  359 (473)
Q Consensus       349 p~~~ka~~~~g  359 (473)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988887

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.64  E-value=2.3e-08  Score=94.70  Aligned_cols=129  Identities=9%  Similarity=-0.068  Sum_probs=103.3

Q ss_pred             cccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC--------------CCC-----hhHHHH
Q psy4385         252 EKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG--------------GFE-----GEQETE  312 (473)
Q Consensus       252 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~--------------~~~-----~~~~~~  312 (473)
                      +.+...+.......+..+..+..+|..+...|++++|+..|++++...+...              ...     ......
T Consensus       134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~  213 (287)
T 3qou_A          134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA  213 (287)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence            3344444444455556678899999999999999999999999876544200              000     011234


Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         313 RKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN--EKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       313 ~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      .+|.+..+++++|.++..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       214 ~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          214 ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            577889999999999999999999999999999999998  89999999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.63  E-value=3.6e-08  Score=95.11  Aligned_cols=124  Identities=9%  Similarity=-0.024  Sum_probs=111.1

Q ss_pred             chhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc-C-ChhHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL-K-QAKPAK  338 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl-~-~~~~A~  338 (473)
                      ....++....+..+|..+...+ .+.+++..+.+++               ..+|.+..+++.++.++.++ + ++++++
T Consensus        81 L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L---------------~~nPKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           81 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA---------------VQNLKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------HTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            3444456778888999998888 5999999999999               66677899999999999998 8 999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPE--------LAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~--------~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      ..|+++|+.+|.|..||+.|+.++..++.++        ++++.+.++++.+|.|-.++.....+...+.
T Consensus       146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999888        9999999999999999999999888876654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.62  E-value=5.7e-08  Score=85.88  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+..+|..+...|+|++|+..|.+++.+......        .......++.++|.++..+|++++|+..+.++
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE--------DPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc--------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4456778999999999999999999999999976542110        01245778999999999999999999999999


Q ss_pred             hhhCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         345 IELEP--NN----EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       345 l~~~p--~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      +.+.+  .+    ..++.++|.++..+|++++|+..|++++.+..
T Consensus       134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            97632  22    34578999999999999999999999998754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.62  E-value=1.3e-07  Score=88.46  Aligned_cols=132  Identities=11%  Similarity=-0.016  Sum_probs=105.5

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCC
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~  350 (473)
                      .....+..+...|+|++|...|..++               ...|... .++.+|.++++.++|.+|+..++.++...+.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~---------------~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~  167 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAP---------------VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK  167 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSC---------------CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH---------------hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence            33445677888999999999999888               3345556 8899999999999999999999988876422


Q ss_pred             -C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy4385         351 -N-EKAFFRRGNAYLDLNEPELAEKDFQKVLQID--PN-NKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK  419 (473)
Q Consensus       351 -~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~~  419 (473)
                       . ..++|.+|.++..+|++++|+..|++++.-.  |. ...+...++.+...+++.. ..+..|++++..-..
T Consensus       168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d-eA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES-AAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHSCC
T ss_pred             ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCc
Confidence             1 4589999999999999999999999998654  55 5678899999998887654 444567777665443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.58  E-value=4.9e-08  Score=76.54  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=62.7

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+..+|..++..|+|++|+..|++++               .++|....+|+++|.|+.++|++++|+..++++++
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELV---------------ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            346788999999999999999999999999               66666788999999999999999999999999999


Q ss_pred             hCCC
Q psy4385         347 LEPN  350 (473)
Q Consensus       347 ~~p~  350 (473)
                      +.|.
T Consensus        70 l~~~   73 (100)
T 3ma5_A           70 VARE   73 (100)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            9764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.58  E-value=2.6e-07  Score=74.58  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH---HHHHHHHHhhhC-C-CCHHHHHH
Q psy4385         283 DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP---AKDQCDKAIELE-P-NNEKAFFR  357 (473)
Q Consensus       283 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~---A~~~~~~al~~~-p-~~~ka~~~  357 (473)
                      .....+...|.+++.               ..+....+.+++|.|+.+..+...   +|..+...+..+ | ..-.++|.
T Consensus        15 ~~l~~~~~~y~~e~~---------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKA---------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHH---------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc---------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            344556666777662               223457789999999999987777   999999999987 5 57789999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         358 RGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       358 ~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +|.+++++|+|++|+.+++.+|+++|+|.++......+..++
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988777776655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.56  E-value=3e-07  Score=73.67  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       335 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      ..|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++..++. ..|.+.+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR-QAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999998876655443 4555555


Q ss_pred             hh
Q psy4385         415 DK  416 (473)
Q Consensus       415 ~~  416 (473)
                      ..
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.51  E-value=7.6e-07  Score=74.28  Aligned_cols=98  Identities=16%  Similarity=0.066  Sum_probs=84.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCC
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPN  350 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~  350 (473)
                      +|..++..+.+++|+..|++|.+.                 .++.+++++|.+|..    .+++++|+.++++|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~-----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL-----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            888888888899999999999843                 347899999999999    89999999999999987  6


Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         351 NEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       351 ~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      ++.+++++|.+|..    .+++++|+..|++|.+..  +..+...|+
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            89999999999999    899999999999999874  555555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.51  E-value=6.2e-07  Score=87.62  Aligned_cols=129  Identities=10%  Similarity=-0.026  Sum_probs=100.7

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+..+|..++..|+|+.|...|.+++.+.+....         ......+++++|.++..+|+|++|+..+++++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999966543110         1233567889999999999999999999999987


Q ss_pred             C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHH
Q psy4385         348 E--------PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN-----KAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       348 ~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~-----~~~~~~l~~~~~~~~~~~~~  405 (473)
                      .        |....++.++|.++...|++++|...+.+++.+.|..     ..++..++.+....++..+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4        3345678889999999999999999999999988753     34566677776666555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.49  E-value=3.3e-07  Score=94.46  Aligned_cols=109  Identities=9%  Similarity=0.000  Sum_probs=75.1

Q ss_pred             hHHHhhHHHHhhcchhhh-------cccHH-------HHHHHHHHHhh-hhcCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFK-------QDKFE-------LACRNYKKAIP-YLDFDGGFEGEQETERKKTLTACHLNAAMCL  328 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~-------~~~~~-------~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  328 (473)
                      ..+.....+...|..+..       .|+++       +|+..|++|+. +.+               .+..+++++|..+
T Consensus       267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p---------------~~~~l~~~~~~~~  331 (530)
T 2ooe_A          267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------------KNMLLYFAYADYE  331 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS---------------SCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHH
Confidence            334556777788888775       68877       99999999995 433               2356677777777


Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      .++|++++|+..|+++++++|.++ .+|..++.++.+.|++++|+..|++|++..|.+..
T Consensus       332 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          332 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            777777777777777777777764 46666666666666666666666666665555433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.47  E-value=8.5e-07  Score=90.41  Aligned_cols=97  Identities=20%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---C
Q psy4385         317 LTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPN---N  385 (473)
Q Consensus       317 ~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~---~  385 (473)
                      ++.+++++|.+|..    .+++++|+.+++++++..  ++.+++++|.+|..    .+++++|+..|++|++.+|+   +
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  439 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT  439 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence            46678888888888    788888888888888764  68888888888887    78888888888888888844   7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4385         386 KAAVQKLTQTKQKLREQKIKEKQVYANMFDKFA  418 (473)
Q Consensus       386 ~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~~  418 (473)
                      ..+...|+.+....   .....+.++++|.+..
T Consensus       440 ~~a~~~l~~~~~~~---~~~a~~~a~~~~~~~~  469 (490)
T 2xm6_A          440 ENRNITEKKLTAKQ---LQQAELLSQQYIEKYA  469 (490)
T ss_dssp             HHHHHHHTTSCHHH---HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHhH---HHHHHHHHHHHHHHHH
Confidence            77777777664421   2223335566666543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.41  E-value=3.7e-06  Score=86.54  Aligned_cols=114  Identities=12%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHhh-hCCC
Q psy4385         286 ELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK-------LKQAK-------PAKDQCDKAIE-LEPN  350 (473)
Q Consensus       286 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------l~~~~-------~A~~~~~~al~-~~p~  350 (473)
                      .+|+..|++|+               ...|..+.+|+++|..+..       +|+++       +|+..+++|++ ++|+
T Consensus       255 ~~a~~~y~~al---------------~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCL---------------LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            47888999999               6677789999999999987       79987       99999999997 8999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-AAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       351 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      +..+|+.+|.++...|++++|...|+++++++|.+. .++..++.+..+.+... ..++.|.+...
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~Al~  384 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK-SGRMIFKKARE  384 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH-HHHHHHHHHHh
Confidence            999999999999999999999999999999999985 57888877766654433 34445555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=3.4e-07  Score=93.06  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=93.8

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+.+..+..+.++|..|..+|+|++|+..|++++.+......       .-+|..+..++|+|.+|..+|+|++|+..|.
T Consensus       345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~  417 (490)
T 3n71_A          345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMIC  417 (490)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            445678889999999999999999999999999976543211       2256788999999999999999999999999


Q ss_pred             HHhhh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         343 KAIEL-----EPNN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       343 ~al~~-----~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      +|+++     .|++   ...+-.+++++..++.|.+|...|.++.+
T Consensus       418 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          418 KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99976     4555   46677899999999999999999988854

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.31  E-value=2.1e-06  Score=83.82  Aligned_cols=137  Identities=9%  Similarity=-0.073  Sum_probs=104.3

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|..++..|++++|+..+++++...+...          ......+++++|.++...|+++.|+..+.+++.
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   81 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   81 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3456677789999999999999999999997664210          123456889999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP--------NNKAAVQKLTQTKQKLREQKIKEKQVYAN  412 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P--------~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  412 (473)
                      +.|..      ..+++++|.++...|+|++|+..|++++.+.+        ....++..++.+....++..+... .+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~  160 (373)
T 1hz4_A           82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARS  160 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHH
Confidence            86543      24578999999999999999999999999853        234456667777766655544432 3444


Q ss_pred             Hh
Q psy4385         413 MF  414 (473)
Q Consensus       413 ~f  414 (473)
                      .+
T Consensus       161 al  162 (373)
T 1hz4_A          161 GI  162 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.29  E-value=2.9e-06  Score=84.59  Aligned_cols=84  Identities=19%  Similarity=0.371  Sum_probs=74.1

Q ss_pred             CCCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCC
Q psy4385         161 STPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVP  237 (473)
Q Consensus       161 ~~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip  237 (473)
                      ..+..|+.|++||.|+.+|+.|++   .++.|.+|.|.   +++||+.+|.+|+.|++..|.+++..+|+..+.      
T Consensus       156 ~~~~~gD~V~i~y~g~~dG~~fd~~~~~~~~~~lG~g~---~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l------  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGR---MIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL------  226 (432)
T ss_dssp             SCCCTTCEEEECEEEESSSCBCSSCCCSSEEEETTSCC---SCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT------
T ss_pred             CCCCCCCEEEEEEEEeeCCeEccCCCccceEEEeCCCC---cchHHHHHhCCCCCCCEEEEEECCchhhCCCCC------
Confidence            458899999999999999999997   38899999987   999999999999999999999999999987653      


Q ss_pred             CCCCceeeeeeccccc
Q psy4385         238 SNKPATYTITMNNFEK  253 (473)
Q Consensus       238 ~~~~~~y~i~L~~~~~  253 (473)
                      ++..+.|.+.+..+..
T Consensus       227 ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             SSCEEEEEEECCEECC
T ss_pred             CCceEEEEEEEEEEec
Confidence            3467899999887755

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.23  E-value=1e-05  Score=82.28  Aligned_cols=109  Identities=16%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             hhHHHHhhcchhhh----cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHH
Q psy4385         268 QGKLLKERGTTYFK----QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKD  339 (473)
Q Consensus       268 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~  339 (473)
                      .+..+..+|..++.    .+++.+|+..|++++..                 .++.+++++|.+|..    .+++++|+.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  100 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----------------GYTPAEYVLGLRYMNGEGVPQDYAQAVI  100 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            45677888888887    88999999999998843                 224566666666666    666667777


Q ss_pred             HHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         340 QCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       340 ~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +|.++++.  .++.+++++|.+|..    .+++++|+..|+++...  .+..+...|+.++.
T Consensus       101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            66666654  356666666666666    66666666666666553  45566666665554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.22  E-value=9.1e-06  Score=65.66  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHcCCh---hHHHHHHHHHhhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQA---KPAKDQCDKAIELEPN-NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~---~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      .+...+|+|.|+.+..+.   ..+|..++..+..+|. .-..+|.+|.+++++|+|++|+++.+.+|+++|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            366889999999998754   5789999999998884 468999999999999999999999999999999999998887


Q ss_pred             HHHHHHHH
Q psy4385         393 TQTKQKLR  400 (473)
Q Consensus       393 ~~~~~~~~  400 (473)
                      ..+..++.
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776663

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.20  E-value=7.4e-06  Score=90.65  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC-
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP-  349 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-  349 (473)
                      .+...|..++..|+|.+|+..|.+|-                       .|..+|.|+.++|+|+.|++.+.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            56679999999999999999999874                       678899999999999999999999965543 


Q ss_pred             ------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4385         350 ------------------------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       350 ------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  403 (473)
                                              .++..+..++..|...|.|++|+..|+++|.++|.+.....+|+.++.+.+-.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence                                    244556677888999999999999999999999999999999988887654333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.18  E-value=4.9e-06  Score=83.98  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             HHHHhhcchhhhcc---cHHHHHHHHHHHhhhhcCCCC----------------CChh-----HHHHHHHHHHHHHHHHH
Q psy4385         270 KLLKERGTTYFKQD---KFELACRNYKKAIPYLDFDGG----------------FEGE-----QETERKKTLTACHLNAA  325 (473)
Q Consensus       270 ~~~~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~~nla  325 (473)
                      .++..+|..+...|   ++.+|+..|++++..-+....                .+.+     -.... +.++.+++++|
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg  255 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA  255 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence            36778899999999   999999999999865332111                1111     01122 56677788888


Q ss_pred             HH-H--HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         326 MC-L--LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN-----EPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       326 ~~-~--~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      .+ +  ...+++++|+.+|.++++.+  ++.+++++|.+|. .|     ++++|+..|++|.   |.+..+...|+.++.
T Consensus       256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          256 QLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            87 3  45778888888888887654  7888888888887 55     8888888888887   778888888887765


Q ss_pred             H
Q psy4385         398 K  398 (473)
Q Consensus       398 ~  398 (473)
                      .
T Consensus       330 ~  330 (452)
T 3e4b_A          330 R  330 (452)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.18  E-value=2.3e-05  Score=64.19  Aligned_cols=83  Identities=13%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHcCCh---hHHHHHHHHHhhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQA---KPAKDQCDKAIELEPN-NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL  392 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~---~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  392 (473)
                      .....+|+|.|+.+..+.   .++|..++..+..+|. .-..+|.+|.+++++|+|++|+++++.+|+++|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            366889999999998864   4799999999998884 568999999999999999999999999999999999998776


Q ss_pred             HHHHHHH
Q psy4385         393 TQTKQKL  399 (473)
Q Consensus       393 ~~~~~~~  399 (473)
                      ..+..++
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.15  E-value=5.1e-06  Score=82.23  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=69.1

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC-
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP-  349 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-  349 (473)
                      .+...|..++..|+|++|+..|.++-                       .|.++|.|+.++|+|+.|++.+.++.  +| 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a~-----------------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHTT-----------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhh-----------------------hHHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            67777888888888888888877663                       45667777777777777777777772  11 


Q ss_pred             --------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4385         350 --------------------------NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE  401 (473)
Q Consensus       350 --------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  401 (473)
                                                .++.-+..+..+|.+.|+|++|+..|++++.+++.+..+...|+.+..+.+-
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p  256 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence                                      1122233445788899999999999999999999999999999988876643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.13  E-value=5.8e-06  Score=83.44  Aligned_cols=109  Identities=14%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             HHhhHHHHhhcch-h--hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-----ChhHH
Q psy4385         266 LEQGKLLKERGTT-Y--FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-----QAKPA  337 (473)
Q Consensus       266 ~~~a~~~~~~G~~-~--~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-----~~~~A  337 (473)
                      ...+..+.++|.. +  ...+++.+|+..|++|+..                 .++.+++++|.+|. .|     ++.+|
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----------------DQPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            4566778888887 4  5788999999999999832                 35779999999998 55     99999


Q ss_pred             HHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         338 KDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       338 ~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +.+|.+|+   +.++.+++++|.+|..    ..++++|+..|++|.+.  .+..+...|+.++.
T Consensus       307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          307 EAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred             HHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            99999999   8999999999999987    45999999999999874  56777888888765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.11  E-value=1.1e-05  Score=74.74  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHH--HHHHHHHHHHHHHHc-----CChhHHHHHHHHHhhhCCCC-HH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT--LTACHLNAAMCLLKL-----KQAKPAKDQCDKAIELEPNN-EK  353 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~kl-----~~~~~A~~~~~~al~~~p~~-~k  353 (473)
                      .+....|....++|+               +++|.  ...+|.-+|..|.+.     |+.++|..++++||+++|+. +.
T Consensus       176 l~~l~~A~a~lerAl---------------eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id  240 (301)
T 3u64_A          176 PDTVHAAVMMLERAC---------------DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD  240 (301)
T ss_dssp             HHHHHHHHHHHHHHH---------------HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH
T ss_pred             HHhHHHHHHHHHHHH---------------HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch
Confidence            344577888888888               55665  677999999999996     99999999999999999975 99


Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC
Q psy4385         354 AFFRRGNAYLDL-NEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       354 a~~~~g~a~~~l-g~~~~A~~~~~~al~l~P~~  385 (473)
                      +++.+|..+... +++++|.+.|++|+..+|..
T Consensus       241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          241 HHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999884 99999999999999998873

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.10  E-value=1.4e-05  Score=66.88  Aligned_cols=78  Identities=13%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             hhHHHHhhcchhhhcc---cHHHHHHHHHHHhhhhcCCCCCChhHHHHHH-H-HHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         268 QGKLLKERGTTYFKQD---KFELACRNYKKAIPYLDFDGGFEGEQETERK-K-TLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      ..+...+.|.++.+..   ++.+++..++..+               ... | .+..+++++|..|+++++|++|+.+++
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll---------------~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL---------------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---------------HHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---------------hcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3456777888888877   7789999999998               333 4 568899999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHH
Q psy4385         343 KAIELEPNNEKAFFRRGN  360 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~  360 (473)
                      ++|+++|+|..|..-+-.
T Consensus        96 ~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHCTTCHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHH
Confidence            999999999988755443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.09  E-value=1.3e-05  Score=66.65  Aligned_cols=94  Identities=16%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      .+++.+|+..|+++.+.-.                 +.++  +|.+|.....+++|+.+++++.+.  .++.+++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~-----------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE-----------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-----------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC-----------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            4689999999999984422                 2233  999999999999999999999987  689999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         362 YLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       362 ~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      |..    .+++++|+..|++|.+.  .++.+...|+.++..
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999    89999999999999987  678999999998865

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.04  E-value=4.4e-05  Score=73.55  Aligned_cols=114  Identities=11%  Similarity=0.069  Sum_probs=77.8

Q ss_pred             HHhhcchhhh---cccHHHHHHHHHHHhhhhcCCCC-----------------CChhHHH------------HHHHHHHH
Q psy4385         272 LKERGTTYFK---QDKFELACRNYKKAIPYLDFDGG-----------------FEGEQET------------ERKKTLTA  319 (473)
Q Consensus       272 ~~~~G~~~~~---~~~~~~A~~~y~~al~~~~~~~~-----------------~~~~~~~------------~~~~~~~~  319 (473)
                      ++-+|..++.   ...+.+|+.+|++|+.+.|....                 .......            ...+..+.
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            3344444443   35568999999999977665111                 1111111            11234455


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +|.-+|..++..|+++.|+..+++|+.++|+ .-+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            6666777777778888888888888888864 66777888888888888888888888888888764

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.03  E-value=7.6e-06  Score=81.51  Aligned_cols=87  Identities=10%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+|+|+++. ||..|+++.  +.++.+.+|.+.  + |+.+|.||++|+...|.+..              +|
T Consensus       154 ~a~~gD~V~id~~~~~-dG~~~~~~~--~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-EEGKKLTSR--EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-TTSCEEEEE--EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            4788999999999985 999999863  357888888876  4 99999999999999999853              46


Q ss_pred             CceEEEEEEEeeeeccCCCCCCCCceEE
Q psy4385         125 STLVFEVEMISWEAEDISPTHDGGIRRE  152 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~~~~d~~i~k~  152 (473)
                      .+..|.|+|.+|....++ +-|..+.+.
T Consensus       214 k~a~F~VtV~~Ik~~~lP-EldDEfak~  240 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLP-EIGDELAKS  240 (433)
T ss_dssp             EEEEEEEEEEEEEEECCC-CSSHHHHHT
T ss_pred             CeEEEEEEEEEEEEecCC-cccHHHHHH
Confidence            789999999999876555 344444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.7e-05  Score=77.27  Aligned_cols=119  Identities=11%  Similarity=0.016  Sum_probs=86.1

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC------------------CChhHHHHH-------------H
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG------------------FEGEQETER-------------K  314 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~------------------~~~~~~~~~-------------~  314 (473)
                      .....++.++|..|+..|+|++|+..|.+++.+.+....                  ...+.....             .
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            344567889999999999999999999999877654211                  111111100             1


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      .....++.++|.+|..+|+|.+|+..+.+++..      .+..+.++...|.+|..+|+|++|...|++++.+.+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            123567788888888888888888888888765      2334567888888888888888888888888888643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.89  E-value=3.4e-05  Score=85.51  Aligned_cols=107  Identities=15%  Similarity=-0.013  Sum_probs=83.9

Q ss_pred             HhhcchhhhcccHHHHHHHHHHHhhhhcCCC-----CCChhHHH--HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         273 KERGTTYFKQDKFELACRNYKKAIPYLDFDG-----GFEGEQET--ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~-----~~~~~~~~--~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      .+.|..+...|.|++|...|+++-.......     ..+.+...  ..+.....+|+++|.++.+.|++++|++.|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            3468999999999999999999863322100     00011100  123355789999999999999999999999876 


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                          +++.+|++.|.++.++|+|++|+++|..|.+.+++
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                88999999999999999999999999999988855

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=97.87  E-value=4.9e-06  Score=81.75  Aligned_cols=84  Identities=19%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             CCCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCC
Q psy4385         161 STPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVP  237 (473)
Q Consensus       161 ~~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip  237 (473)
                      ..+..|+.|++||.|+.+|..|++   .++.|.+|.|.   +++||+.+|.+|+.|++..+.++....|+..+.      
T Consensus       159 ~~~~~gD~V~i~y~g~~dG~~fd~~~~~~~~~~lG~g~---~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l------  229 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGR---MIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL------  229 (392)
T ss_dssp             CCCCTTCEEEEEEEEESSSSCCTTCEEEEEEEETTSCC---BSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT------
T ss_pred             CCCCCCCEEEEEEEEEECCEEccCCCccceEEEecCCC---cchhHHHHhCCCCCCCEEEEEEeCccccccCCC------
Confidence            458899999999999999999986   48899999998   999999999999999999999974445654332      


Q ss_pred             CCCCceeeeeeccccc
Q psy4385         238 SNKPATYTITMNNFEK  253 (473)
Q Consensus       238 ~~~~~~y~i~L~~~~~  253 (473)
                      ++..+.|.+.+..+..
T Consensus       230 aGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          230 KGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             SSCEEEECCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEEc
Confidence            4568899999887755

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=2.4e-05  Score=77.70  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=69.6

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      +..+|..++..|+|.+|+..+++++......         .-++....++.+++.+|..+++|.+|...+++++.+.+..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKL---------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhc---------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            3456666677777777777777766443321         1245677899999999999999999999999999886554


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      .......+..+...|.+..+..+|..|..
T Consensus       209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          209 YCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            44445566666666666655555655543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.78  E-value=0.00013  Score=68.86  Aligned_cols=128  Identities=10%  Similarity=-0.065  Sum_probs=88.9

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC--------------C-Chh---HH---HHHHHH----HHHHHHHHH
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG--------------F-EGE---QE---TERKKT----LTACHLNAA  325 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~-~~~---~~---~~~~~~----~~~~~~nla  325 (473)
                      .+.-.|..++..|++++|++.+.++|...+....              . .+.   ..   ...++.    .-.+..+++
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            3457788888899999999999988654321000              0 010   11   122231    134455555


Q ss_pred             HH--HHHcC--ChhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCHHHH
Q psy4385         326 MC--LLKLK--QAKPAKDQCDKAIELEPN--NEKAFFRRGNAYLDLNEPELAEKDFQKVLQI----------DPNNKAAV  389 (473)
Q Consensus       326 ~~--~~kl~--~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l----------~P~~~~~~  389 (473)
                      ..  .+..|  ++..|...|+++....|+  ....+++   +++.+|+|++|...++.++++          +|+|+.+.
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            44  66667  999999999999988887  3455566   899999999999999988887          58899998


Q ss_pred             HHHHHHHHHHHH
Q psy4385         390 QKLTQTKQKLRE  401 (473)
Q Consensus       390 ~~l~~~~~~~~~  401 (473)
                      .++..+...+++
T Consensus       259 aN~i~l~~~lgk  270 (310)
T 3mv2_B          259 ANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCh
Confidence            777666666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.75  E-value=0.00011  Score=69.48  Aligned_cols=93  Identities=10%  Similarity=0.054  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--CCHHHHHHHHHHHHhc
Q psy4385         288 ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--NNEKAFFRRGNAYLDL  365 (473)
Q Consensus       288 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~l  365 (473)
                      |+..+++.+..-.               .....+..+|.++...|++++|+..|.++|..+|  .+..++...+++++.+
T Consensus        85 a~~~l~~l~~~~~---------------~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~  149 (310)
T 3mv2_B           85 NIEELENLLKDKQ---------------NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN  149 (310)
T ss_dssp             CCHHHHHTTTTSC---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCC---------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC
Confidence            7777877763211               1123446788888999999999999999988887  7889999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH
Q psy4385         366 NEPELAEKDFQKVLQIDPN----NKAAVQKLTQT  395 (473)
Q Consensus       366 g~~~~A~~~~~~al~l~P~----~~~~~~~l~~~  395 (473)
                      |+.+.|.+.+++..+.+|+    +..+...|...
T Consensus       150 ~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          150 NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            9999999999999888883    33444555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.70  E-value=0.00015  Score=61.01  Aligned_cols=118  Identities=8%  Similarity=-0.043  Sum_probs=86.2

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--  349 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--  349 (473)
                      +.+....++..+.|+.|+-.+..++.+.+.+.....      -.....++..+|.+++..++|..|...|++||++.-  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            445556688899999999999998876644322100      123466889999999999999999999999986521  


Q ss_pred             -C----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         350 -N----------------------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       350 -~----------------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                       .                      .....|+.+.||.+++++++|+..++.+-.. -..+.+.-.|++++
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence             1                      1257799999999999999999998754222 13456666666553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.70  E-value=5.4e-05  Score=58.19  Aligned_cols=68  Identities=15%  Similarity=0.006  Sum_probs=60.1

Q ss_pred             hHHHHhhcchhhhccc---HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         269 GKLLKERGTTYFKQDK---FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      +..+...|.+++..++   ..+|...+++|+               .++|.++.+++.+|..+++.|+|++|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL---------------~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQAL---------------QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---------------HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5567777888865555   799999999999               7788889999999999999999999999999999


Q ss_pred             hhCCCC
Q psy4385         346 ELEPNN  351 (473)
Q Consensus       346 ~~~p~~  351 (473)
                      +.+|..
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999984

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.63  E-value=7.4e-05  Score=69.19  Aligned_cols=116  Identities=11%  Similarity=0.036  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHHHhhhhcC----C-CC-------CC----hhHHHHHHHHHHHHHHHHHHHHHH---c--C------ChhH
Q psy4385         284 KFELACRNYKKAIPYLDF----D-GG-------FE----GEQETERKKTLTACHLNAAMCLLK---L--K------QAKP  336 (473)
Q Consensus       284 ~~~~A~~~y~~al~~~~~----~-~~-------~~----~~~~~~~~~~~~~~~~nla~~~~k---l--~------~~~~  336 (473)
                      ++.+|...|.++.++...    . ..       .+    ++.....++..+.+++-.|.....   +  +      ....
T Consensus       102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~  181 (301)
T 3u64_A          102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHA  181 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence            466777777777765322    0 11       01    111223345556666666666543   2  2      3578


Q ss_pred             HHHHHHHHhhhCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Q psy4385         337 AKDQCDKAIELEPN--NEKAFFRRGNAYLDL-----NEPELAEKDFQKVLQIDPNN-KAAVQKLTQTKQKL  399 (473)
Q Consensus       337 A~~~~~~al~~~p~--~~ka~~~~g~a~~~l-----g~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~  399 (473)
                      |....++|+++||+  +..+|..+|..|..+     |+.+.|...|++|++++|+. ..++..++......
T Consensus       182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence            99999999999999  667999999999996     99999999999999999975 88888888876543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.60  E-value=5.1e-05  Score=75.78  Aligned_cols=95  Identities=9%  Similarity=-0.060  Sum_probs=76.1

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+.+..+..+.++|..|..+|+|++|+..|++++.+.....+       ..+|..+..++|+|.+|..+|+|++|+..+.
T Consensus       323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            455678899999999999999999999999999976543221       2256788999999999999999999999999


Q ss_pred             HHhhh-----CCCCH---HHHHHHHHHHHh
Q psy4385         343 KAIEL-----EPNNE---KAFFRRGNAYLD  364 (473)
Q Consensus       343 ~al~~-----~p~~~---ka~~~~g~a~~~  364 (473)
                      +|+++     .|+++   ..+.+++.++..
T Consensus       396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          396 LAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99976     45554   445566666544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.55  E-value=4.7e-05  Score=75.30  Aligned_cols=122  Identities=14%  Similarity=0.062  Sum_probs=54.2

Q ss_pred             ccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy4385         249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCL  328 (473)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  328 (473)
                      ..++.+...+.+..+. ...+....+++..+.+.|++.++...|+.                     .+...+.++|.++
T Consensus        75 g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---------------------pn~~a~~~IGd~~  132 (449)
T 1b89_A           75 GNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFING---------------------PNNAHIQQVGDRC  132 (449)
T ss_dssp             -----------------------------------CHHHHTTTTTC---------------------C------------
T ss_pred             CCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHcC---------------------CcHHHHHHHHHHH
Confidence            3444444444444432 22234455566666666666666655432                     1234899999999


Q ss_pred             HHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       329 ~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      ...|.|++|+.+|+++        ..|.++|.|+.++|+|++|++.+++|     ++..++..+..+....++.+.+
T Consensus       133 ~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          133 YDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             ----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHH
Confidence            9999999999999987        57899999999999999999999999     4566766665555544433333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.47  E-value=9.8e-05  Score=73.69  Aligned_cols=84  Identities=12%  Similarity=0.059  Sum_probs=69.6

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      .+.+..+..+.++|..|..+|+|++|+..|++++.+......       .-+|..+..++|+|.+|..+|+|++|+..++
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-------VYSLNVASMWLKLGRLYMGLENKAAGEKALK  406 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-------CCChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            445677889999999999999999999999999976543211       1256788899999999999999999999999


Q ss_pred             HHhhh-----CCCCHH
Q psy4385         343 KAIEL-----EPNNEK  353 (473)
Q Consensus       343 ~al~~-----~p~~~k  353 (473)
                      +|+++     .|+++.
T Consensus       407 ~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          407 KAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHHHHHTCTTCHH
T ss_pred             HHHHHHHHHcCCCChH
Confidence            99976     466653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.22  E-value=0.0015  Score=52.57  Aligned_cols=77  Identities=14%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             HHHHhhcchhhhcccHHH---HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         270 KLLKERGTTYFKQDKFEL---ACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ....+.+.++.+..+...   ++..++..++-..             ....-.+++.+|..++++|+|..|+.+|+.+|+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-------------p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------------cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344555666665555444   7777776663210             014677899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRG  359 (473)
Q Consensus       347 ~~p~~~ka~~~~g  359 (473)
                      ++|+|..|.--+.
T Consensus       103 ~eP~n~QA~~Lk~  115 (126)
T 1nzn_A          103 TEPQNNQAKELER  115 (126)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             hCCCCHHHHHHHH
Confidence            9999998865443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.18  E-value=0.0062  Score=59.77  Aligned_cols=112  Identities=16%  Similarity=0.040  Sum_probs=92.5

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQC  341 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~  341 (473)
                      ...+...|......++...|...+.+|+.+......       +...+...+......+...++.+++.+|++..|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            344555566666778999999999999987654221       1134456777888888999999999999999999999


Q ss_pred             HHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy4385         342 DKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       342 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  380 (473)
                      ..++..+|-+..+|..+-.+|...|+..+|++.|+++-+
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987743

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.72  E-value=0.0054  Score=49.49  Aligned_cols=44  Identities=23%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRG  359 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g  359 (473)
                      ..-.+++.+|..++++|+|..|..+++.+|+++|+|..|.--+.
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            46779999999999999999999999999999999998865443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.54  E-value=0.0024  Score=67.28  Aligned_cols=98  Identities=9%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhh-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIEL-EPNNEKAFFRRGNAYLDLNE-PELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~-~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      .+|...+.+..+.++.+.|...+.+|++. .+...+.|...+..-...++ ++.|...|+++++..|+++..+..+....
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            35666666666667777777777777766 44445666666665555543 77777777777777777777665444443


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q psy4385         397 QKLREQKIKEKQVYANMFDKF  417 (473)
Q Consensus       397 ~~~~~~~~~~k~~~~~~f~~~  417 (473)
                      ..++ ..+..+..|.+.....
T Consensus       515 ~~~~-~~~~AR~lferal~~~  534 (679)
T 4e6h_A          515 IYVN-EESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHT-CHHHHHHHHHHHTTTS
T ss_pred             HhCC-CHHHHHHHHHHHHHhc
Confidence            3332 1233344444444333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.52  E-value=0.019  Score=60.55  Aligned_cols=82  Identities=11%  Similarity=-0.038  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH-HHHHHHhhhCCCCHHHHHHHHHHHH
Q psy4385         285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK-DQCDKAIELEPNNEKAFFRRGNAYL  363 (473)
Q Consensus       285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~-~~~~~al~~~p~~~ka~~~~g~a~~  363 (473)
                      ..+....|++|+               ...|....+|+..|..+...++.+.|+ ..+.+|+...|.+...|+.++....
T Consensus       325 ~~Rv~~~Ye~aL---------------~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          325 KARMTYVYMQAA---------------QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHH---------------HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---------------HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345667788888               444556889999999999999999997 9999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhc
Q psy4385         364 DLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       364 ~lg~~~~A~~~~~~al~l  381 (473)
                      ..|+++.|...|++++..
T Consensus       390 ~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHH
Confidence            999999999999999975

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.51  E-value=0.026  Score=46.53  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=87.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAI  345 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al  345 (473)
                      ...+..+-..|+-+-. +-..+-+..|++|+..++...       .......+.++.+.|.. ..+++.++|.+.|+.++
T Consensus        17 ~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k-------~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDK-------YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             HHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGG-------GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccc-------cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            3444444444554433 344778899999998776531       12334567778888755 67799999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         346 ELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       346 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      .+....++.|...|+--.+.|+...|...+.+|+.+.|...+.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            9988889999999999999999999999999999999987664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.49  E-value=0.012  Score=48.16  Aligned_cols=43  Identities=23%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHH
Q psy4385         316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR  358 (473)
Q Consensus       316 ~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~  358 (473)
                      ..-.+++.+|..++++|+|..|..+++.+|+++|+|..|.--+
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            3567899999999999999999999999999999998886443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.36  E-value=0.015  Score=55.88  Aligned_cols=104  Identities=8%  Similarity=0.019  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCh-----------hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4385         309 QETERKKTLTACHLNAAMCLLKLKQA-----------KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK  377 (473)
Q Consensus       309 ~~~~~~~~~~~~~~nla~~~~kl~~~-----------~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~  377 (473)
                      ...+++|.++.+|-.++.||..+..+           ..|+. ...++..+|.++.+|..++.++...|++++|+..+++
T Consensus       224 ~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~r  302 (372)
T 3ly7_A          224 EIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT  302 (372)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34577888899999999998643221           11222 1134577899999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4385         378 VLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFD  415 (473)
Q Consensus       378 al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  415 (473)
                      |+.++|+ ..++..++.+....++..++. ..|.+.|.
T Consensus       303 Al~Ln~s-~~a~~llG~~~~~~G~~~eA~-e~~~~Alr  338 (372)
T 3ly7_A          303 GIDLEMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFN  338 (372)
T ss_dssp             HHHHCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHhcCCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHh
Confidence            9999975 667778888887666555443 45555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.054  Score=57.28  Aligned_cols=64  Identities=13%  Similarity=0.073  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385         315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       315 ~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a  378 (473)
                      +....++.-.|..++..++|+.|+..+.+|+..-|.....|++++.||..+|+|+.|+-.+.-+
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3444566667787888999999999999999999999999999999999999999999766554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.28  E-value=0.049  Score=45.77  Aligned_cols=85  Identities=13%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC---
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE---------KAFFRRGNAYLDLNEPELAEKDFQKVLQID---PNN---  385 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~---------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~---P~~---  385 (473)
                      ++.-...++..+.|+.|+-.++.++.+..++.         .+++.+|.+++..++|..|...|++||++.   |.+   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            33444556788999999999999887754333         488999999999999999999999997653   112   


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHHHH
Q psy4385         386 -------------------KAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       386 -------------------~~~~~~l~~~~~~~~~~~~~  405 (473)
                                         .++++.++.|..++++.+++
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence                               15667777887777555543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.08  E-value=0.16  Score=42.63  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=71.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh--h-----
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE--L-----  347 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~--~-----  347 (473)
                      .+..+|-.|.|.+|+-.....-                    .....+-.+.||.++++|..|+...+..|+  .     
T Consensus        39 ~~I~LyyngEY~R~Lf~L~~lN--------------------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~   98 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLHKLN--------------------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD   98 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTCC--------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred             hhhhhhhcchHhHHHHHHHhcc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            4667788888888776654321                    255667789999999999999999999992  2     


Q ss_pred             ----------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         348 ----------EPNNEKAF-FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       348 ----------~p~~~ka~-~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                                ||.+-..+ .-+|..+.++|+-++|+..+.+....+|--+.+
T Consensus        99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence                      23343443 357899999999999999999999988865544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.84  E-value=0.17  Score=50.90  Aligned_cols=83  Identities=13%  Similarity=0.072  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ...++.++|....-...+..|..+|.+|+.+.|.+..+|..+|......|++-+|+-+|.+++....-.+.+..+|..+.
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            34577888988888889999999999999999999999999999999999999999999999998777888888888776


Q ss_pred             HHH
Q psy4385         397 QKL  399 (473)
Q Consensus       397 ~~~  399 (473)
                      .+.
T Consensus       231 ~~~  233 (497)
T 1ya0_A          231 SKA  233 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.43  E-value=0.35  Score=48.76  Aligned_cols=124  Identities=11%  Similarity=-0.025  Sum_probs=85.7

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCC-------h-hHH-HH----------------HHHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFE-------G-EQE-TE----------------RKKTLTACHLN  323 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------~-~~~-~~----------------~~~~~~~~~~n  323 (473)
                      ...+...+.-+...|+.+.|...|.+|+.. +......       + ++. ..                .......+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            445666666677889999999999999988 5432110       0 000 00                01223466777


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN-EPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       324 la~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      .+....+.++.+.|...+.+| ...+.....|...+..-...+ +++.|...|+++++..|+++..+.....
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            777777888999999999999 443345566666676666666 6999999999999999998876444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.42  E-value=0.31  Score=49.24  Aligned_cols=116  Identities=11%  Similarity=-0.013  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH---
Q psy4385         285 FELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA---  361 (473)
Q Consensus       285 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a---  361 (473)
                      ...+...|++++..               .|....+|++.+..+...++.+.|...+++|+.. |.+...++..+..   
T Consensus       195 ~~Rv~~~ye~al~~---------------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~  258 (493)
T 2uy1_A          195 ESRMHFIHNYILDS---------------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE  258 (493)
T ss_dssp             HHHHHHHHHHHHHH---------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch
Confidence            34456677777743               3445789999999999999999999999999999 9876444333322   


Q ss_pred             -------------------------------------HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4385         362 -------------------------------------YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKI  404 (473)
Q Consensus       362 -------------------------------------~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  404 (473)
                                                           ..+.++.+.|...|.+| ...+....++...+.+........+
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~  337 (493)
T 2uy1_A          259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRA  337 (493)
T ss_dssp             THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred             hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChH
Confidence                                                 22356788899999999 4332233444333443333322234


Q ss_pred             HHHHHHHHHhhhh
Q psy4385         405 KEKQVYANMFDKF  417 (473)
Q Consensus       405 ~~k~~~~~~f~~~  417 (473)
                      ..+..|.......
T Consensus       338 ~ar~ife~al~~~  350 (493)
T 2uy1_A          338 TPYNIFSSGLLKH  350 (493)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHC
Confidence            4555666555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.15  E-value=0.27  Score=44.73  Aligned_cols=68  Identities=15%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ  394 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  394 (473)
                      .+++.++.+.|+..+...++-+|.|++....+-+.+.-.|+|+.|..-++.+.+++|+.......+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~   73 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   73 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999998665444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.89  E-value=0.45  Score=46.25  Aligned_cols=98  Identities=14%  Similarity=0.020  Sum_probs=79.5

Q ss_pred             hhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC---CC
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE---PN  350 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~---p~  350 (473)
                      .+|..|+..|+|.+|...+.+.++.+.....         ......++......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6889999999999999999999987765321         35677889999999999999999999999987553   12


Q ss_pred             CH----HHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q psy4385         351 NE----KAFFRRGNAYL-DLNEPELAEKDFQKVLQ  380 (473)
Q Consensus       351 ~~----ka~~~~g~a~~-~lg~~~~A~~~~~~al~  380 (473)
                      .+    .....-|..++ ..++|..|..+|-.++.
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            22    33445689999 89999999999999874

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=92.59  E-value=0.16  Score=50.23  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEEEEeeeCCeEEEec---eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGECEGKVFQEG---TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS  238 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~~g~~~~~~---~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~  238 (473)
                      ....|+.|+++|.|..+|..|++.   ++.+.+|.+.    +  ++.+|.+|+.|+...|.+.    |           +
T Consensus       154 ~a~~gD~V~id~~~~~dG~~~~~~~~~~~~l~~g~~~----~--fe~~liG~k~Ge~~~~~vt----F-----------a  212 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYNEEGKKLTSREYEYVISEDEDR----P--FVKDLVGKKKGDVVEIERE----Y-----------E  212 (433)
T ss_dssp             CCCTTSEEEEEEEEECTTSCEEEEEEEEEECCSSCCC----T--THHHHTTCCTTCEEEEEEE----E-----------T
T ss_pred             ccCCCCEEEEEEEEEECCEECcCCCCCCeEEEecCCc----h--HHHHhCCCCCCceEEEEEe----e-----------C
Confidence            356899999999999999999864   5566677764    2  8899999999999998872    2           2


Q ss_pred             CCCceeeeeeccccc
Q psy4385         239 NKPATYTITMNNFEK  253 (473)
Q Consensus       239 ~~~~~y~i~L~~~~~  253 (473)
                      +....|.+.+..+..
T Consensus       213 Gk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          213 GKKYTYKLEVEEVYK  227 (433)
T ss_dssp             TEEEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEEEE
Confidence            456889998887754

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=91.85  E-value=0.8  Score=42.72  Aligned_cols=118  Identities=15%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC--Ch--hHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK--QA--KPAKDQCDKA  344 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~--~~--~~A~~~~~~a  344 (473)
                      .....+.|..++..|+|.+|+..|+.+|..+......+.++..+++.....+...+-.+-+.+.  ..  +...+.++-|
T Consensus       114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            3344558999999999999999999999887765555556655666555554333222222221  10  1112222222


Q ss_pred             h-----hhCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         345 I-----ELEPNNEKAFFRRG-NAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       345 l-----~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      .     .+.|.+--.-.|.| ...++.++|.-|....++.|++.|...
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            1     23333332233444 445788999999999999999999744

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.60  E-value=6  Score=36.83  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=73.9

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc--CCh-----hHHHHHHHH
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL--KQA-----KPAKDQCDK  343 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl--~~~-----~~A~~~~~~  343 (473)
                      ...+.|..++..|+|.+|+..|+.+|..+......+.++..+++.....+...+-.+-+.+  .+.     +...+.++-
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            3456799999999999999999999988876655566666666665555443333222233  221     232333333


Q ss_pred             Hh-----hhCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q psy4385         344 AI-----ELEPNNEKAFFRRG-NAYLDLNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       344 al-----~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~P~  384 (473)
                      +.     .+.|.+--.-.|.| ...++.++|.-|....++.|++.|.
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            32     23343333333444 4457889999999999999999886

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.75  E-value=0.35  Score=47.80  Aligned_cols=101  Identities=12%  Similarity=-0.026  Sum_probs=78.3

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh--
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL--  347 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~--  347 (473)
                      ..+..+|.-++..|++..|...|.++.......            .....++++...+++..++|..|...++++..+  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            356678999999999999999999988655432            134678888888999999999999999998655  


Q ss_pred             -CCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy4385         348 -EPNN-E--KAFFRRGNAYLDLNEPELAEKDFQKVLQID  382 (473)
Q Consensus       348 -~p~~-~--ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  382 (473)
                       .++. .  +.....|.++...++|.+|...|..++.-.
T Consensus       200 ~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             2222 1  334456788889999999999998876543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.14  E-value=1.3  Score=40.31  Aligned_cols=62  Identities=15%  Similarity=0.050  Sum_probs=55.1

Q ss_pred             hhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHH
Q psy4385         278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKA  354 (473)
Q Consensus       278 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka  354 (473)
                      .+++.++...|+......|               ..+|.++.+...+-..+.-.|+|++|...++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~V---------------R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAI---------------KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHH---------------HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHH---------------HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            4678999999999999999               5566778888888999999999999999999999999987654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.69  E-value=7.3  Score=37.64  Aligned_cols=85  Identities=9%  Similarity=-0.022  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhCC----------CCH------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385         321 HLNAAMCLLKLKQAKPAKDQCDKAIELEP----------NNE------------KAFFRRGNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       321 ~~nla~~~~kl~~~~~A~~~~~~al~~~p----------~~~------------ka~~~~g~a~~~lg~~~~A~~~~~~a  378 (473)
                      +...|......++...|+..+.+|+.+-.          .+.            .++..++.+++.+|++++|+..+.++
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33444445567899999999999987731          111            35556788899999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         379 LQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       379 l~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      +..+|-+..++..|..++...+++.++
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999998888877665555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.01  E-value=0.57  Score=49.54  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+...+..+..+|+|+.|+..-++|+.+.+               ..-..|..||.||.++|+|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP---------------seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELAL---------------DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCc---------------hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            344556667789999999999999995554               45789999999999999999999887766

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.16  E-value=3.8  Score=39.75  Aligned_cols=127  Identities=9%  Similarity=-0.002  Sum_probs=85.9

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCC------------------CCChh----------HHHHHH-H--HH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDG------------------GFEGE----------QETERK-K--TL  317 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~------------------~~~~~----------~~~~~~-~--~~  317 (473)
                      -.+..++|..|.+.|++++-.........++....                  +.+.+          +|..-. .  +.
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999999988888776665554311                  11111          111111 1  12


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhh----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIEL----EP--NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID---PNNKAA  388 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~----~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~---P~~~~~  388 (473)
                      ..+-.++|..|+..|+|.+|...+.++++-    |.  .-...+....++|..++++..+.+.|.+|....   +.++.+
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence            234458999999999999999999888764    21  123567778899999999999999999997653   234555


Q ss_pred             HHHHHHH
Q psy4385         389 VQKLTQT  395 (473)
Q Consensus       389 ~~~l~~~  395 (473)
                      ...+..+
T Consensus       179 ~a~i~~~  185 (394)
T 3txn_A          179 QGALDLQ  185 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.11  E-value=5.4  Score=39.42  Aligned_cols=105  Identities=11%  Similarity=-0.029  Sum_probs=77.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh-
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE-  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~-  346 (473)
                      .+.....++..++..|+|.+|.........-....  .       -......+++.....|+..++|.+|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~-------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--M-------EMSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--S-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--c-------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45556678899999999999999988875322110  0       1234577788888899999999999999998742 


Q ss_pred             --hCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         347 --LEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       347 --~~p~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                        -.+..+    ..+...|..+...++|.+|..+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              223332    34556788889999999999999988764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.88  E-value=1.6  Score=43.66  Aligned_cols=69  Identities=13%  Similarity=0.016  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC--CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEP--NN---EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p--~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +.+++-+=..|+..+.|++|....+++.-...  .|   +..+|..|.++.-.++|.+|..+|..|++..|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            55667777889999999999999999953221  22   45677889999999999999999999999988653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=86.30  E-value=1.5  Score=44.13  Aligned_cols=80  Identities=11%  Similarity=-0.090  Sum_probs=68.5

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ..+..+|.....+..+..|..+|.+|+               .+.|.....|+.+|.++.-.+++-.|+-+|.++|....
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~---------------~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~  217 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAA---------------QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHH---------------HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence            456678999888899999999999999               66666788999999999999999999999999998877


Q ss_pred             CCHHHHHHHHHHHHh
Q psy4385         350 NNEKAFFRRGNAYLD  364 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~  364 (473)
                      -.+.|.-++...+..
T Consensus       218 Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          218 PFPAASTNLQKALSK  232 (497)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            778887777766653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.22  E-value=0.85  Score=33.50  Aligned_cols=35  Identities=29%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhh
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYL  299 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~  299 (473)
                      .+..|..+...|...-+.|+|.+|+.+|..||.++
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45678888889999999999999999999999654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.55  E-value=19  Score=36.06  Aligned_cols=118  Identities=8%  Similarity=0.015  Sum_probs=81.1

Q ss_pred             hhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC-CCCHHHHHHH
Q psy4385         280 FKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE-PNNEKAFFRR  358 (473)
Q Consensus       280 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~-p~~~ka~~~~  358 (473)
                      .+.+....|...|.+....-             +. .+...|+.+-.+|.+.|++++|...+++..+.. .-+...|..+
T Consensus        81 ~~~~~l~~A~~lf~~M~~~G-------------~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l  146 (501)
T 4g26_A           81 SPNPGLSRGFDIFKQMIVDK-------------VV-PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA  146 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT-------------CC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHhC-------------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence            34566788888887765220             00 135578888889999999999999999987653 2367788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         359 GNAYLDLNEPELAEKDFQKVLQI--DPNNKAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       359 g~a~~~lg~~~~A~~~~~~al~l--~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      -.+|.+.|++++|.+.|....+.  .|+ ...+..|-.+..+.++.++ ..+.+.+|
T Consensus       147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~-A~~ll~~M  201 (501)
T 4g26_A          147 LFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADK-VYKTLQRL  201 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH-HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHH-HHHHHHHH
Confidence            89999999999999999988764  454 4455555555444443332 23344444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=83.83  E-value=10  Score=37.98  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             HHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC-
Q psy4385         271 LLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP-  349 (473)
Q Consensus       271 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p-  349 (473)
                      .+..+-..+.+.|++++|...|.+....--             . .+...|+.+=.+|.+.|++++|...+++..+..- 
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-------------~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI-------------Q-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------C-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            344556678899999999999988763210             0 1255677777888999999999999999887642 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVLQ--IDPN  384 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~--l~P~  384 (473)
                      -+...|..+-.+|.+.|++++|.+.|++..+  ..|+
T Consensus       173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            2667888899999999999999999998755  3555

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.00  E-value=5.1  Score=44.81  Aligned_cols=105  Identities=12%  Similarity=-0.019  Sum_probs=75.3

Q ss_pred             HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh--hHHHHHH------HHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG--EQETERK------KTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~--~~~~~~~------~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      +-+|..++..|++++|..+|.+|...+........  .....+.      ......|+.....+-+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56889999999999999999998754433221111  1111111      113456778888888999999999999999


Q ss_pred             hhhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4385         345 IELEPNNE-----KAFFRRGNAYLDLNEPELAEKDFQK  377 (473)
Q Consensus       345 l~~~p~~~-----ka~~~~g~a~~~lg~~~~A~~~~~~  377 (473)
                      |+..+.+.     ..|.+.-.+++.+++|++|...+..
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            98764332     2577888999999999999877743

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.23  E-value=4.6  Score=34.20  Aligned_cols=84  Identities=12%  Similarity=-0.026  Sum_probs=48.7

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      +....|+.+|......|++.-|..+|.++-++                       ..+...|.-.|+-+.-....+.+..
T Consensus        32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------------~~L~~Ly~~tg~~e~L~kla~iA~~   88 (177)
T 3mkq_B           32 NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----------------------DKLSFLYLVTGDVNKLSKMQNIAQT   88 (177)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34456777888888888888888888776522                       1233334445555443333333332


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV  378 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a  378 (473)
                      .+ +    +.....+++.+|+++++++.|.+.
T Consensus        89 ~g-~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           89 RE-D----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             TT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             Cc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            22 1    122345677788888888777654

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=80.62  E-value=3.8  Score=32.18  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             cCch-hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385         260 LNSD-EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD  300 (473)
Q Consensus       260 ~~~~-~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~  300 (473)
                      |+.. ..+..|..+...+...-..++|.+|+.+|..|+.++-
T Consensus         8 m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A            8 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            4444 5667788888889899999999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-33
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	5e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-33
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-31
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	7e-08
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	1e-30
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	0.004
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-30
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-13
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	6e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-26
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	0.002
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	2e-26
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-04
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	4e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-25
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-24
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	9e-17
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-23
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-21
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-19
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	6e-19
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-18
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	6e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-14
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	4e-14
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	8e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-07
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	6e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.004
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  120 bits (302), Expect = 2e-33
 Identities = 68/117 (58%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 24  IDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLG 81
           ID+T   DGGVLK IK  G G   P+ G  VKVHY GTL +GT FDSS+ RG+ F F+LG
Sbjct: 2   IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLG 61

Query: 82  KGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA 138
           +G VIK WD G+ATM K EVA FT + +Y YG  GSPP IP  +TL+FEVE+  W A
Sbjct: 62  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.2 bits (109), Expect = 5e-07
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQE--GTFSFVLGEGSE 196
           DI+P  DGG+ + I +EG     P  G  V++   G  E G  F                
Sbjct: 3   DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGR 62

Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF 251
            ++ +  +  +      E +   ++  + +   G+    +P      + + +  +
Sbjct: 63  GNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP-KIPGGATLIFEVELFEW 116

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  121 bits (303), Expect = 4e-33
 Identities = 69/167 (41%), Positives = 108/167 (64%)

Query: 255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314
           K++W++++ EKLEQ  ++KE+GT YFK  K+  A   Y K + +L+ + G   ++    +
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 315 KTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKD 374
             L A  LN AMC LKL++   A + CDKA+ L+  NEK  +RRG A L +NE E A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 375 FQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHD 421
           F+KVL+++P NKAA  ++   ++K +E   ++++ YANMF KFA+ D
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 72/120 (60%), Positives = 84/120 (70%), Gaps = 2/120 (1%)

Query: 22  KAIDLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFD 79
           + +D++   D GVLK IK  G G   P  G +V VHYTG LLDGT FDSS  R + F FD
Sbjct: 1   EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 60

Query: 80  LGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEAE 139
           LGKG+VIKAWD  IATMK  EV   TCKPEYAYG  GSPP IPP++TLVFEVE+  ++ E
Sbjct: 61  LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 7e-08
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 137 EAEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF--QEGTFSFVLGE 193
           E  DISP  D G+ + I  EG     P  G  V +   G    G  F            +
Sbjct: 1   EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 60

Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253
             + ++ +  + A+   K  E   +  +P++ +   G+    +P N    + + +  F+ 
Sbjct: 61  LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFEFKG 119

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  112 bits (281), Expect = 1e-30
 Identities = 63/110 (57%), Positives = 76/110 (69%)

Query: 28  DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIK 87
            D GVLK +K  G G+ TP  G +V VHY G L +G  FDSS  R EPF F +GKGQVIK
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 88  AWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           AWD G+ATMKK E+    CKPEYAYG  GS P IP ++TL FEVE++ ++
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 146 DGGIRREILEEGASFSTPKDGANVEITLKGECE-GKVF--QEGTFSFVLGEGSEYDIPEN 202
           D G+ + +   G    TP  G  V +   G+   GK F          +    +  + + 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 203 LEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252
            +  +   K  E   L  +P++ +   G+    +PSN    + + + +F+
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLP-KIPSNATLFFEVELLDFK 111

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  111 bits (278), Expect = 4e-30
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 25  DLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQ 84
           DL +DGG+++  K  G G + P+ G +V++H  G    G VFD         E +     
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGED--HD 59

Query: 85  VIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWE 137
           +    D+ +  M+++E  +    P Y +G+ G P   I P++ L++EV + S+E
Sbjct: 60  IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE 113

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.5 bits (154), Expect = 4e-13
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 138 AEDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEY 197
            ED+    DGGI R     G  +S P +GA V+I L+G C G+VF     +F +GEG ++
Sbjct: 1   GEDL--LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDH 58

Query: 198 DIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253
           DIP  ++KALEK + +E+  L + P++ +   G  K G+  N    Y +T+ +FEK
Sbjct: 59  DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 6e-29
 Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 6/174 (3%)

Query: 258 WQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL 317
           W++NS+EKLEQ  ++KERGT YFK+ K++ A   YKK + +L+++  F  E+  + +   
Sbjct: 2   WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQK 377
            A HLN AMC LKL+    A + C+KA+EL+ NNEK   RRG A+L +N+ ELA  DFQK
Sbjct: 62  LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 121

Query: 378 VLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAKHDTEKEEEEKKK 431
           VLQ+ PNNKAA  +L   +Q++R Q  +EK++YANMF++        EEE K K
Sbjct: 122 VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL------AEEENKAK 169

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-26
 Identities = 53/107 (49%), Positives = 67/107 (62%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWD 90
           GV  E  +PG G T P  G    VHYTG L DG  FDSS+ R +PF+F LGK +VI+ W+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 91  RGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
            G+A M   + A  T  P+YAYG  G P  IPP +TLVF+VE++  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 148 GIRREILEEGASFSTPKDGANVEITLKGECE-GKVFQEG-----TFSFVLGEGSEYDIPE 201
           G++ E +  G   + PK G    +   G  E GK F         F F+LG   + ++  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLG---KQEVIR 57

Query: 202 NLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE 252
             E+ + +    ++++L + P + +   G+  + +P +    + + +   E
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 53/107 (49%), Positives = 67/107 (62%)

Query: 29  DGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKA 88
           +G V  +  +PG G T P  G  V +HYTGTL +G  FDSS  RG PF+ ++G GQVIK 
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 89  WDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMIS 135
           WD GI  +   E A  T    YAYG +G P  IPP+STLVF+VE++ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 142 SPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYD--- 198
           S   +G ++ + +  G   + PK G  V I   G  E     + +               
Sbjct: 1   SEVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQ 60

Query: 199 IPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITM 248
           + +  +  + K    EK+RL + P     G       +P N    + + +
Sbjct: 61  VIKGWDVGIPKLSVGEKARLTI-PGPYAYGPRGFPGLIPPNSTLVFDVEL 109

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 4e-25
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 31  GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSK-------TRGEPFEFDLGKG 83
              K +   G     P  G  V   YTGTL DGTVFD++           +P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 84  QVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSP-PTIPPDSTLVFEVEMIS 135
           +VI+ WD  + TM K E A    +PE+AYGK+G P   IPP++ L FEVE++ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =   99 bits (248), Expect = 6e-25
 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
           T   G++ ++   G G+  P     V V+Y GTL+DG  FD+S TRGEP  F L    VI
Sbjct: 104 TSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVI 160

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
             W  G+  +KK         PE AYGK G P  IPP+STLVF+VE++  +
Sbjct: 161 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDVK 210

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 2e-24
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 25  DLT--DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGK 82
           DLT  +DGG+++ I+T G G   P+ G  V+V   G   D       + R E  E     
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQ-RELRFEIGEG--EN 57

Query: 83  GQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWE 137
             +    +R I  M+K E ++   KP YA+G  G     IPP++ L +E+ + S+E
Sbjct: 58  LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 113

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 9e-17
 Identities = 38/117 (32%), Positives = 67/117 (57%)

Query: 140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDI 199
           D++   DGGI R I   G  ++ P +GA VE+ L+G  + K+F +    F +GEG   D+
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDL 60

Query: 200 PENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
           P  LE+A+++ +  E S ++++P + +   G +K  +P N    Y + + +FEK K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 94.9 bits (235), Expect = 3e-23
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G+  ++   G G   P     V V YTG L+DGTVFDS++  G+P  F     QVI
Sbjct: 95  VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVI 151

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
             W   +  M              AYG +     I P+ TL+F++ +IS +
Sbjct: 152 PGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK 202

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 88.9 bits (219), Expect = 1e-21
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 1/150 (0%)

Query: 255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERK 314
           K  +    +EK++    +KE G  +FK+++   A   YK+A+ +      ++ +   ++K
Sbjct: 3   KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 62

Query: 315 KTL-TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEK 373
           K +  +C+LN A C  K K    A D   K ++++ NN KA ++ G A +     E A++
Sbjct: 63  KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 122

Query: 374 DFQKVLQIDPNNKAAVQKLTQTKQKLREQK 403
           +  K   ++PNN            KL+E +
Sbjct: 123 NLYKAASLNPNNLDIRNSYELCVNKLKEAR 152

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 82.6 bits (203), Expect = 3e-19
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 2/111 (1%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G++ +    G G   P+   K +VHYTG L DGTVFDSS+ RG+P  F     +VI
Sbjct: 31  KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVI 88

Query: 87  KAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE 137
           K W   +  M++ +        + AYG  G    IPP S L F+VE+IS +
Sbjct: 89  KGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK 139

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.3 bits (197), Expect = 6e-19
 Identities = 44/119 (36%), Positives = 55/119 (46%), Gaps = 12/119 (10%)

Query: 27  TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVI 86
               G+    K  G G      G  +K HY G L +G VFDSS  RG+P  F +G G+VI
Sbjct: 5   VSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVI 63

Query: 87  KAWD------RGIATMKKDEVAVFTCKPEYAYGKQGS-----PPTIPPDSTLVFEVEMI 134
           K WD       GI  M           PE AYG +G+        IPP S L+F++E I
Sbjct: 64  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 2e-18
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE- 308
           +F +  D    + D+ L   + LK  G T+FK   +E+A + Y K + Y++       + 
Sbjct: 8   DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP 368
              + +    +C LN   C LK+   + A D C +A+E++P+N KA +RR   +  L E 
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127

Query: 369 ELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY 410
           + A  D +K  +I P +KA   +L + KQK++ QK KEK  Y
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 72.5 bits (177), Expect = 6e-16
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 49  GCKVKVHYTGTLLDGTVFDSS-------------KTRGEPFEFDLGKGQVIKAWDRGIAT 95
           G K+KV Y G L  G VFD+S                 EP EF +G+GQ+I+ ++  +  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 96  MKKDEVAVFTCKPEYAYGKQGS--PPTIPPDSTLVFEVE 132
           M+  +        E AYG +       IP D+    + E
Sbjct: 65  MEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFE 103

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 19/177 (10%)

Query: 242 ATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIP---- 297
                    F++    +            +       Y++Q   +LA   Y++AI     
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 298 -----------YLDFDGGFEGEQETER----KKTLTACHLNAAMCLLKLKQAKPAKDQCD 342
                        +     E E           T      N A    +    + A     
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL 399
           KA+E+ P    A     +      + + A   +++ ++I P    A   +  T +++
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 9/71 (12%), Positives = 22/71 (30%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
           +  A    +    + A+  C +    EP+N        + +      + +       ++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 382 DPNNKAAVQKL 392
           +P    A   L
Sbjct: 63  NPLLAEAYSNL 73

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 23/160 (14%), Positives = 42/160 (26%), Gaps = 15/160 (9%)

Query: 242 ATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF 301
                           ++                G    +   F+ A   Y         
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY--------- 226

Query: 302 DGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA 361
                  +           H N A    +      A D   +AIEL+P+   A+    NA
Sbjct: 227 ------LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 362 YLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
             +      AE  +   L++ P +  ++  L   K++   
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 15/119 (12%)

Query: 248 MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG 307
             +  + +D +             L        +Q   E A R Y+KA+           
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL----------- 332

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLN 366
               E      A H N A  L +  + + A     +AI + P    A+   GN   ++ 
Sbjct: 333 ----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
             E     ++   FE A R+  +                  ++   T   L  +    + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLW---------------RQEPDNTGVLLLLSSIHFQC 46

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYL 363
           ++   +      AI+  P   +A+   GN Y 
Sbjct: 47  RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 30/94 (31%)

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE 367
            +  E +        N         +   A    +KA+ L+PN   A+   GN   +   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 368 PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLRE 401
            + A   + + L + PN+      L     +   
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.2 bits (168), Expect = 3e-14
 Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 24/189 (12%)

Query: 272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL 331
           LKE+G   F   K+  A   Y +AI                R   +   + N A+C LK+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKM 51

Query: 332 KQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK 391
           +Q + A   C +A+EL+  + KA F  G   L++   + A  + Q+   +    +     
Sbjct: 52  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

Query: 392 LTQTKQKL---------REQKIKEKQVYANMFDKFAKHDTEKEEEEKKKEPDVMKTLGEW 442
              +  ++          E++I ++    +   +    + E+E EE ++  +  +  G  
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

Query: 443 GAEERGRES 451
            A++   E+
Sbjct: 172 RAQQACIEA 180

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 65.4 bits (159), Expect = 4e-14
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 49  GCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKP 108
           G    + +TG + D     S+  +        G    IK ++ G+  MK ++        
Sbjct: 5   GDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 109 EYAYGKQGSPPTIPPDSTLVFEVEMIS 135
              Y  +           + FEV + +
Sbjct: 62  PSDYHVKE-----LQSKPVTFEVVLKA 83

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 8e-12
 Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH 321
           +D  L++ + LK +   YFK   +E A + Y +AI     +                  +
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYY 47

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
            N ++  L+ +    A     +AIEL+    K ++RR  + + L +   A +D++ V+++
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 382 DPNNKAAVQKLTQTKQKLREQKIKE 406
            P++K A  K  +  + ++++  + 
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFER 132

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           +Q    KE G   +K+  F+ A ++Y KA                E   T      N A 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAK---------------ELDPTNMTYITNQAA 46

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVL 379
              +       ++ C+KAIE+   N        KA+ R GN+Y    + + A   + K L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 380 QIDPNNKAAVQKLTQTKQKLREQ 402
                     +K  Q ++ L+EQ
Sbjct: 107 AEHRTPDVL-KKCQQAEKILKEQ 128

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 3e-10
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM 326
           EQ   LKE+G         + A + Y +AI                        + N + 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKL---------------DPHNHVLYSNRSA 45

Query: 327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK 386
              K    + A +   K ++L+P+  K + R+  A   LN  E A++ +++ L+ + NN 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105

Query: 387 AAVQKLTQTKQK 398
              + L   + +
Sbjct: 106 QLKEGLQNMEAR 117

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 36/284 (12%), Positives = 81/284 (28%), Gaps = 26/284 (9%)

Query: 196 EYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIK 255
           EY + + +E+ L    +K +           +    ++  V +N           + ++ 
Sbjct: 49  EYALDKKVEQDLWNHAFKNQITTL--QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLL 106

Query: 256 DTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKK 315
                  +  L       + G    KQ       +    +  Y+                
Sbjct: 107 QELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------------- 153

Query: 316 TLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDF 375
               C ++         Q   A+     A +L P+N + + +         +       +
Sbjct: 154 ----CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209

Query: 376 QKVLQIDPNNKAAVQKLTQTKQKLRE--QKIKEKQVYANMFDKFAK-----HDTEKEEEE 428
            + + +     AA   L +   K  E   ++K K   ++    F K     + ++  E+ 
Sbjct: 210 CRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKL 269

Query: 429 KKKEPDVMKTLGEWGAEERGRESTNFEKENPNIFMLDGTGDFKN 472
                 + +   E   ++             N+F L    DF N
Sbjct: 270 SPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSN 313

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA 388
           +     +A  L+ +   +       +      +     +QK+L  D      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD 53

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 7/250 (2%)

Query: 149 IRREILEEGASFSTPKDGANV---EITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEK 205
            RRE+L+   +  +P++ A +   E+     C     +                  N  +
Sbjct: 68  CRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 127

Query: 206 ALEKF-KYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDE 264
            LE   ++ E                      P+ + A     +        +W   S  
Sbjct: 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187

Query: 265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDF--DGGFEGEQETERKKTLTACHL 322
             +      + G      +   L      +   + D      +   +    +        
Sbjct: 188 LPQLHPQ-PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE 246

Query: 323 NAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQID 382
            +      L+    +  +  +                 A   L   +   + F  +  +D
Sbjct: 247 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

Query: 383 PNNKAAVQKL 392
           P   A +  L
Sbjct: 307 PMRAAYLDDL 316

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 14/150 (9%)

Query: 264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLN 323
           +++    L            +++ A  N ++A   ++       E+  +       CH  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 324 AAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF-----------FRRGNAYLDLNEPELAE 372
            A  L  L+    A    DKA+       +             + R  A   L     A 
Sbjct: 61  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120

Query: 373 KDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402
            +F+KV+++    K       +  +   ++
Sbjct: 121 PEFKKVVEMIEERKGETPGKERMMEVAIDR 150

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 20/185 (10%), Positives = 49/185 (26%), Gaps = 21/185 (11%)

Query: 239 NKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPY 298
           N    Y     NF+   + +    +           RG   +   + +LA  +       
Sbjct: 75  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134

Query: 299 LDFDGGF---------------------EGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337
              D                        +  +++++++            + +    +  
Sbjct: 135 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194

Query: 338 KDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
           K        L  +  +  F  G  YL L + + A   F+  +  + +N    +       
Sbjct: 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELS 254

Query: 398 KLREQ 402
            L + 
Sbjct: 255 LLGQD 259

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 18/190 (9%)

Query: 231 NDKLGVPSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACR 290
           ++ L VP        + +   E+I  +  L  DE+ +   LL ERG  Y       LA  
Sbjct: 2   SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQ---LLYERGVLYDSLGLRALARN 58

Query: 291 NYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPN 350
           ++ +A+                 +  +        + L +      A +  D  +EL+P 
Sbjct: 59  DFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103

Query: 351 NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVY 410
              A   RG A       +LA+ D     Q DPN+      L   +QKL E++ KE    
Sbjct: 104 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163

Query: 411 ANMFDKFAKH 420
                   + 
Sbjct: 164 HFEKSDKEQW 173

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 328 LLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKA 387
            L   Q + A +   +AI+  P +               + E A++   + +++ P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 388 AVQKL 392
              +L
Sbjct: 66  GASQL 70

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 10/118 (8%), Positives = 30/118 (25%), Gaps = 15/118 (12%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           +      + + + A     +AI               +      +   +    L      
Sbjct: 2   QWKNALSEGQLQQALELLIEAI---------------KASPKDASLRSSFIELLCIDGDF 46

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKL 392
           + A +Q  ++I+L P       +  +        +   +       +  N +     +
Sbjct: 47  ERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 104

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 342 DKAIELEPNNE----KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ 397
           DK  + E  N        F  G   L   +   A   F+  +Q DP +  A Q L  T+ 
Sbjct: 5   DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 64

Query: 398 KLREQKIKEKQ 408
           +  ++ +    
Sbjct: 65  ENEQELLAISA 75

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 322 LNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQI 381
               +  L+      A    + A++ +P + +A+   G    +  +  LA    ++ L++
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 382 DPNN 385
            P+N
Sbjct: 83  KPDN 86

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 9e-06
 Identities = 12/80 (15%), Positives = 31/80 (38%)

Query: 320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVL 379
                   L    Q++ A     +A+EL+P   ++ +  G + ++L     A + F + L
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267

Query: 380 QIDPNNKAAVQKLTQTKQKL 399
            +   ++    +     + +
Sbjct: 268 NMQRKSRGPRGEGGAMSENI 287

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 8/85 (9%), Positives = 22/85 (25%), Gaps = 11/85 (12%)

Query: 308 EQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRR--------- 358
            +  E +        N  +  + L   + A +   +A+ ++  +                
Sbjct: 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 289

Query: 359 --GNAYLDLNEPELAEKDFQKVLQI 381
               A   L + +       + L  
Sbjct: 290 TLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 18/171 (10%)

Query: 249 NNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGE 308
             ++K    +Q   +  L       E G    ++     A   ++ A+            
Sbjct: 2   ATYDK---GYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV------------ 46

Query: 309 QETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEP 368
              ++                + +Q   A     + +EL+P+N+ A      ++ + +  
Sbjct: 47  ---QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103

Query: 369 ELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDKFAK 419
             A +  +  L+  P     V    +          K           F +
Sbjct: 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 13/147 (8%), Positives = 41/147 (27%), Gaps = 7/147 (4%)

Query: 270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACH-LNAAMCL 328
           ++    G  Y        A + + ++I           ++     +T      +      
Sbjct: 37  RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96

Query: 329 LKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK-- 386
           L   +     D     ++ +    +  +     Y    E + AE+       +    +  
Sbjct: 97  LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156

Query: 387 ---AAVQKLTQTKQKLREQKIKEKQVY 410
               A++ +   ++      I   +++
Sbjct: 157 KIDKAMECV-WKQKLYEPVVIPVGRLF 182

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 14/124 (11%)

Query: 278 TYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPA 337
                +      + ++                     K+    +    +        +  
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVS------------KSTQFEYAWCLVRTRYNDDIRKG 55

Query: 338 KDQCDKAIELEPNNEK--AFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQT 395
               ++ +      E+    F        L E E A K  + +LQ +P N  A +     
Sbjct: 56  IVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

Query: 396 KQKL 399
            + +
Sbjct: 116 DKAM 119

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 8/78 (10%), Positives = 22/78 (28%)

Query: 343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ 402
             I         +             E A K  +  ++++  N           + L++ 
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93

Query: 403 KIKEKQVYANMFDKFAKH 420
             +E      + ++  K+
Sbjct: 94  LHEEMNYITAIIEEQPKN 111

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 22/218 (10%), Positives = 56/218 (25%), Gaps = 26/218 (11%)

Query: 197 YDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIKD 256
             + ++L + +             +   +W  +      +         I     +  K+
Sbjct: 88  KSLQKDLHEEM--NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145

Query: 257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT 316
                             R     +   ++   +   + +   D        Q       
Sbjct: 146 YHAWQH------------RQWVIQEFKLWDNELQYVDQLLK-EDVRNNSVWNQRYFVISN 192

Query: 317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQ 376
            T  +  A +                + I+L P+NE A+        D    +       
Sbjct: 193 TTGYNDRAVLE--------REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLN 243

Query: 377 KVLQIDPN--NKAAVQKLTQTKQKLREQKIKEKQVYAN 412
           ++L + P+  +   +  L    + + E +   K+   N
Sbjct: 244 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 321 HLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNE-PELAEKDFQKVL 379
           +      L + ++++ A      AIEL   N   +  R      L +           ++
Sbjct: 46  YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII 105

Query: 380 QIDPNNKAAVQKLTQTKQKLR 400
           +  P N           + LR
Sbjct: 106 EEQPKNYQVWHHRRVLVEWLR 126

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 11/144 (7%), Positives = 34/144 (23%), Gaps = 14/144 (9%)

Query: 275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA 334
           R        K      +  + + Y+            E +        +  + +  L+  
Sbjct: 83  RRVLLKSLQK------DLHEEMNYIT--------AIIEEQPKNYQVWHHRRVLVEWLRDP 128

Query: 335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQ 394
               +     +  +  N  A+  R     +    +   +   ++L+ D  N +   +   
Sbjct: 129 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188

Query: 395 TKQKLREQKIKEKQVYANMFDKFA 418
                     +        +    
Sbjct: 189 VISNTTGYNDRAVLEREVQYTLEM 212

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 305 FEGEQETERKKTLTA-CHLNAAMCLLKLKQAKPAKDQCDKAIEL--------EPNNEKAF 355
              +  +E   T T     N A  L+K        +     +++        E    +  
Sbjct: 21  LRQQVVSEGGPTATIQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECL 76

Query: 356 FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKE 406
           +        L E  +A++    + + + NNK         K  + ++  KE
Sbjct: 77  YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV----GALKSMVEDKIQKE 123

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 28/257 (10%), Positives = 68/257 (26%), Gaps = 33/257 (12%)

Query: 194 GSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK 253
            + Y + + L  A + F      +     +        +               +++ E 
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE-AYKCFKSGGNSVNAVDSLEN 102

Query: 254 IKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETER 313
               +      +       +           +  A   Y+ A  +           + + 
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW---------YAQDQS 153

Query: 314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNE-------KAFFRRGNAYLDLN 366
                 C +  A       Q   A D   K I+    N          F ++G   L   
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213

Query: 367 EPELAEKDFQKVLQIDPNNKAA-----VQKLTQTKQKLREQKIKEK-----------QVY 410
           +   A +  Q+    DPN   +     ++ L     +   +++ E            +  
Sbjct: 214 DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273

Query: 411 ANMFDKFAKHDTEKEEE 427
             + +K  +   ++E++
Sbjct: 274 ITILNKIKESIQQQEDD 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.97
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.95
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.95
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.94
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.93
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.92
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.92
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.91
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.91
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.9
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.82
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.75
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.74
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.73
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.65
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.54
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.52
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.32
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.25
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.04
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.95
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.9
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.87
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	98.8
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	98.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.5
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.3
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.29
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.11
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.02
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.65
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	97.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.35
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	97.31
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.13
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	85.78
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	85.71
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.06
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.5

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-31  Score=212.37  Aligned_cols=119  Identities=61%  Similarity=0.969  Sum_probs=114.8

Q ss_pred             cCccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCC
Q psy4385          20 ESKAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKD   99 (473)
Q Consensus        20 ~~~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G   99 (473)
                      +|+|+++..|+||+|+|+++|.|...|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++|
T Consensus         1 ~~~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~G   80 (120)
T d1q1ca1           1 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG   80 (120)
T ss_dssp             CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTT
T ss_pred             CceeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCC
Confidence            58999999999999999999999877999999999999999999999999998899999999999999999999999999


Q ss_pred             cEEEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         100 EVAVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       100 e~~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      |+++|+|||++|||..|+++.|||+++|+|+|+|++|..
T Consensus        81 e~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          81 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             CEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             cEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            999999999999999999999999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.5e-30  Score=209.24  Aligned_cols=116  Identities=56%  Similarity=0.994  Sum_probs=111.9

Q ss_pred             ccceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcE
Q psy4385          22 KAIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEV  101 (473)
Q Consensus        22 ~~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~  101 (473)
                      +|+++.+|+||.|+++++|+|...|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++||+
T Consensus         2 ~d~t~~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~   81 (118)
T d1r9ha_           2 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEV   81 (118)
T ss_dssp             EECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCE
T ss_pred             ccccccCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCce
Confidence            68899999999999999999976799999999999999999999999998889999999999999999999999999999


Q ss_pred             EEEEecCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         102 AVFTCKPEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       102 ~~v~i~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      ++|+|||++|||+.|+++.|||+++|+|+|+|++|.
T Consensus        82 ~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          82 AEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999999999998999999999999999985

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=6.8e-27  Score=203.26  Aligned_cols=167  Identities=41%  Similarity=0.722  Sum_probs=160.3

Q ss_pred             ccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCCh
Q psy4385         255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQA  334 (473)
Q Consensus       255 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~  334 (473)
                      ++.|.|+..+++..+..+++.|+.+|+.|+|..|+..|++|+.+++.......+......+....+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            46899999999999999999999999999999999999999999988877777888888999999999999999999999


Q ss_pred             hHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         335 KPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       335 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      .+|+.+|+++|.++|+++++|+++|.+|..+|+|++|+.+|.+++.++|+|+.+...+..+...+.++.+.+++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCC
Q psy4385         415 DKFAKHD  421 (473)
Q Consensus       415 ~~~~~~~  421 (473)
                      ++..+.+
T Consensus       161 ~~~~~~d  167 (168)
T d1kt1a1         161 KKFAEQD  167 (168)
T ss_dssp             HHHHTTC
T ss_pred             hhhhhcC
Confidence            9988765

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=9.7e-29  Score=197.89  Aligned_cols=110  Identities=57%  Similarity=0.998  Sum_probs=86.8

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEec
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK  107 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~  107 (473)
                      +|+||+|+++++|.|...|..||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            68999999999999987899999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         108 PEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       108 ~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |++|||..|.++.|||+++|+|+|+|++|.
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999989999999999999999974

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=190.57  Aligned_cols=107  Identities=50%  Similarity=0.877  Sum_probs=102.9

Q ss_pred             CEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCC
Q psy4385          31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEY  110 (473)
Q Consensus        31 gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~  110 (473)
                      ||.|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||+++|.+|++||+++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999986799999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         111 AYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       111 ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |||..|.++.||||++|+|+|+|++|.
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999988999999999999999873

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.2e-27  Score=190.86  Aligned_cols=110  Identities=48%  Similarity=0.799  Sum_probs=105.7

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      ..|+||.++++++|+|...|+.||.|+|||++++.||++|++++....|+.|.+|.+.+++||++||.+|++|++++|+|
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            35889999999999998679999999999999999999999999888999999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~  136 (473)
                      ||++|||..|.++.|||+++|+|+|+|++|
T Consensus        83 P~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            999999999999899999999999999987

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=200.70  Aligned_cols=163  Identities=48%  Similarity=0.796  Sum_probs=157.3

Q ss_pred             ccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q psy4385         257 TWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKP  336 (473)
Q Consensus       257 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~  336 (473)
                      .|+|+.++++..+..+++.|+.+|+.|+|.+|+..|++||.+++........+..........+|.|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            48999999999999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         337 AKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       337 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      |+.+|++||.++|+++++|+++|.||..+|+|++|+.+|+++++++|+|+.+...+..+..++.++.+.+++.|++||++
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcC
Q psy4385         417 FAK  419 (473)
Q Consensus       417 ~~~  419 (473)
                      +..
T Consensus       161 ~~~  163 (170)
T d1p5qa1         161 LAE  163 (170)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            864

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.7e-26  Score=182.61  Aligned_cols=107  Identities=42%  Similarity=0.773  Sum_probs=99.5

Q ss_pred             CEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCC-------CCccEEEEeCCCccchhHHHHhccCCCCcEEE
Q psy4385          31 GVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKT-------RGEPFEFDLGKGQVIKAWDRGIATMKKDEVAV  103 (473)
Q Consensus        31 gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~-------~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~  103 (473)
                      .+.|+|+++|+|...|+.||.|+|||++++.||++||+|+.       ..+|+.|.+|.+.+++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            57899999999976899999999999999999999999864       34699999999999999999999999999999


Q ss_pred             EEecCCCCcCCCCCC-CCCCCCCceEEEEEEEeee
Q psy4385         104 FTCKPEYAYGKQGSP-PTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       104 v~i~~~~ayg~~g~~-~~ip~~~~l~~~v~l~~~~  137 (473)
                      |+|||++|||+.|.+ ..|||+++|+|+|+|++|.
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            999999999999986 4799999999999999873

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4.9e-26  Score=202.47  Aligned_cols=108  Identities=32%  Similarity=0.561  Sum_probs=102.6

Q ss_pred             CCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEec
Q psy4385          28 DDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCK  107 (473)
Q Consensus        28 ~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~  107 (473)
                      +++|+.|+|+++|.|. .|..||.|+|||++++.||++|++|+.++.|+.|.+|  .+|+||++||.+|++|++++|+||
T Consensus        96 ~~sGl~y~v~~~G~G~-~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~iP  172 (204)
T d1fd9a_          96 LPSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVP  172 (204)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             ecCccEEEEeecCCCc-ccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEEEC
Confidence            5789999999999997 7999999999999999999999999988889999885  699999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         108 PEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       108 ~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      |++|||+.|+++.||||++|+|+|+|++|.+
T Consensus       173 ~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         173 SGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             hHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            9999999999999999999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-25  Score=200.08  Aligned_cols=107  Identities=44%  Similarity=0.797  Sum_probs=101.1

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      .+++|+.|+|+++|+|. .|..||.|+|||++++.||++|++|+.++.|+.|.+|  .+|+||++||.+|++|++++|+|
T Consensus       104 ~~~sGl~y~v~~~G~G~-~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSSC-CCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCCC-CCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            35789999999999996 8999999999999999999999999999999999995  69999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      ||++|||+.|.++ ||||++|+|+|+|++|.
T Consensus       181 P~~laYG~~g~~~-Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         181 PPELAYGKAGVPG-IPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             CGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCC-CCcCCcEEEEEEEEEEC
Confidence            9999999999865 99999999999999873

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=3.2e-25  Score=188.71  Aligned_cols=110  Identities=37%  Similarity=0.602  Sum_probs=101.6

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEe
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTC  106 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i  106 (473)
                      +.++||+|+++++|.|...|..||.|+|||++++.||++|++++..+.|  |.++.+.+++||+++|.+|++|++++|+|
T Consensus        31 ~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~v~i  108 (160)
T d1jvwa_          31 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMREGDRWRLFI  108 (160)
T ss_dssp             ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCccccceeEEEe
Confidence            4688999999999999877999999999999999999999999876666  45666889999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCCCCCCceEEEEEEEeeee
Q psy4385         107 KPEYAYGKQGSPPTIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       107 ~~~~ayg~~g~~~~ip~~~~l~~~v~l~~~~~  138 (473)
                      ||++|||..|.++.|||+++|+|+|+|++|..
T Consensus       109 Pp~laYG~~g~~~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_         109 PYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             CGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             CHHHCcCCCCCCCCcCcCCcEEEEEEEEEEec
Confidence            99999999999889999999999999999964

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.91  E-value=1.9e-24  Score=174.58  Aligned_cols=107  Identities=32%  Similarity=0.732  Sum_probs=96.9

Q ss_pred             ecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCC---ccchhHHHHhccCCCCcEE
Q psy4385          26 LTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKG---QVIKAWDRGIATMKKDEVA  102 (473)
Q Consensus        26 ~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~---~~~~g~~~~l~~m~~Ge~~  102 (473)
                      ++.|+||.|+|+++|+|..+|..||.|+|||++++ +|++|+++     +..|.++.+   .+|+||+++|.+|++||++
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~   77 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQC   77 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhcee
Confidence            45899999999999999768999999999999997 88888875     567777653   5899999999999999999


Q ss_pred             EEEecCCCCcCCCCCCC-CCCCCCceEEEEEEEeeee
Q psy4385         103 VFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       103 ~v~i~~~~ayg~~g~~~-~ip~~~~l~~~v~l~~~~~  138 (473)
                      +|+|||++|||+.|+++ .|||+++|+|+|+|++|.+
T Consensus        78 ~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          78 ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999877 6999999999999999864

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.1e-24  Score=178.56  Aligned_cols=109  Identities=40%  Similarity=0.696  Sum_probs=101.2

Q ss_pred             cCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhcc------CCCCc
Q psy4385          27 TDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIAT------MKKDE  100 (473)
Q Consensus        27 ~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~------m~~Ge  100 (473)
                      ++++||+|+++++|+|. .|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.+++||++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G~-~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSSC-BCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccCC-CCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            56789999999999997 799999999999999999999999998888999999999999999998854      99999


Q ss_pred             EEEEEecCCCCcCCCCC-----CCCCCCCCceEEEEEEEee
Q psy4385         101 VAVFTCKPEYAYGKQGS-----PPTIPPDSTLVFEVEMISW  136 (473)
Q Consensus       101 ~~~v~i~~~~ayg~~g~-----~~~ip~~~~l~~~v~l~~~  136 (473)
                      +++|+|||++|||+.|.     ++.|||+++|+|+|||+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999885     3459999999999999975

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.91  E-value=2.5e-23  Score=177.42  Aligned_cols=148  Identities=26%  Similarity=0.409  Sum_probs=135.8

Q ss_pred             ccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy4385         255 KDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEG-EQETERKKTLTACHLNAAMCLLKLKQ  333 (473)
Q Consensus       255 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~kl~~  333 (473)
                      ++.|+|+.+++++.+..+++.|+.+|+.|+|.+|+..|++|+++++......+ .......+....+++|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999998877555433 34456677888999999999999999


Q ss_pred             hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      |++|+.+|++||+++|.++++||++|.+|..+|+|++|+.+|+++++++|+|..+...+..+..++++.
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877544

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=170.11  Aligned_cols=110  Identities=33%  Similarity=0.660  Sum_probs=97.2

Q ss_pred             cceecCCCCEEEEEEeCCCCCCCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCC---ccchhHHHHhccCCCC
Q psy4385          23 AIDLTDDGGVLKEIKTPGVGDTTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKG---QVIKAWDRGIATMKKD   99 (473)
Q Consensus        23 ~~~~~~~~gv~~~i~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~---~~~~g~~~~l~~m~~G   99 (473)
                      |++.+.|+||.|+|+++|.|...|..||.|+|||++++.|| .|+++     +..+..+.+   .+++||+++|.+|++|
T Consensus         1 d~t~~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~G   74 (117)
T d1q1ca2           1 DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKG   74 (117)
T ss_dssp             ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTE-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTT
T ss_pred             CCCccCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCC-cEeec-----cccceeeecceeeeCcHHHHhhhcchhh
Confidence            67788999999999999999778999999999999999766 45554     455666543   6899999999999999


Q ss_pred             cEEEEEecCCCCcCCCCCCC-CCCCCCceEEEEEEEeeee
Q psy4385         100 EVAVFTCKPEYAYGKQGSPP-TIPPDSTLVFEVEMISWEA  138 (473)
Q Consensus       100 e~~~v~i~~~~ayg~~g~~~-~ip~~~~l~~~v~l~~~~~  138 (473)
                      ++++|+|||++|||..|+++ .|||+++|+|+|+|++|.+
T Consensus        75 e~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~  114 (117)
T d1q1ca2          75 EHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  114 (117)
T ss_dssp             CEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred             CeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEe
Confidence            99999999999999999866 6999999999999999975

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.3e-21  Score=168.07  Aligned_cols=148  Identities=33%  Similarity=0.529  Sum_probs=130.9

Q ss_pred             chhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy4385         262 SDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQ  340 (473)
Q Consensus       262 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~  340 (473)
                      .+..+..+..++..|+.++..|+|..|+..|.+||.+++.... ........++|....+++|+|.|++++++|++|+.+
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            3556777888999999999999999999999999987654211 223334466889999999999999999999999999


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         341 CDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQV  409 (473)
Q Consensus       341 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  409 (473)
                      |++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|..+...|..+..++.++.+++|+.
T Consensus       100 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~  168 (169)
T d1ihga1         100 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA  168 (169)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999988888777653

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=4.7e-21  Score=154.39  Aligned_cols=110  Identities=38%  Similarity=0.723  Sum_probs=104.6

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCC
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQH  224 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~  224 (473)
                      .|+++.++++++|+|..+|..+++|+|||+|+++|++|++++..|.++.+....+++||+.||..|+.||++.+.+||.+
T Consensus         6 ~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~~g~~~~~~~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v~ip~~~   85 (115)
T d1kt1a3           6 EDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRY   85 (115)
T ss_dssp             SSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             cCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEeCCccccccccCceeeeccccccCchhHhhhccchhhceeEEEeCHHH
Confidence            89999999999999999999999999999999999999999999999887666799999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceeeeeecccccc
Q psy4385         225 LWSGKGNDKLGVPSNKPATYTITMNNFEKI  254 (473)
Q Consensus       225 ~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~  254 (473)
                      +||..+.+...||+++.+.|+++|.+|+++
T Consensus        86 ayG~~g~~~~~Ipp~a~l~f~ieLl~~~ka  115 (115)
T d1kt1a3          86 GFGEAGKPKFGIEPNAELIYEVTLKSFEKA  115 (115)
T ss_dssp             SSCTTCBTTTTBCTTCCEEEEEEEEEEECC
T ss_pred             CcCCCCCCCCCcCcCCeEEEEEEEEEEEeC
Confidence            999999988889999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=5.2e-20  Score=148.07  Aligned_cols=109  Identities=22%  Similarity=0.487  Sum_probs=100.8

Q ss_pred             cCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccC
Q psy4385         140 DISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYK  213 (473)
Q Consensus       140 ~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~g  213 (473)
                      ++++..|+++.++++++|+|...|..+++|++||.|++ +|++|++     .|.+|.+|.+.   +++||+.+|..|++|
T Consensus         3 d~t~~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~---vi~G~~~~l~~M~~G   79 (118)
T d1r9ha_           3 DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGN---VIKGWDLGVATMTKG   79 (118)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTS---SCHHHHHHHTTCCBT
T ss_pred             cccccCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcc---eeeeeeeeeeeecCC
Confidence            45677899999999999999889999999999999999 9999986     38899999887   999999999999999


Q ss_pred             cEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         214 EKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       214 E~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      |++.+.+||+++||..+... .||+++.+.|+++|.+|.
T Consensus        80 e~~~~~ipp~laYG~~g~~~-~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          80 EVAEFTIRSDYGYGDAGSPP-KIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CEEEEEECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEEE
T ss_pred             ceEEEEECHHHhCCcCCCCC-ccCcCCcEEEEEEEEEEe
Confidence            99999999999999999853 599999999999998874

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.8e-20  Score=148.31  Aligned_cols=115  Identities=32%  Similarity=0.683  Sum_probs=106.3

Q ss_pred             CCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeeeCCeEEEeceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEe
Q psy4385         141 ISPTHDGGIRREILEEGASFSTPKDGANVEITLKGECEGKVFQEGTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFV  220 (473)
Q Consensus       141 ~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~~g~~~~~~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i  220 (473)
                      ++...|++|.++++++|.|..+|..|++|+|||.|++.+..|++++..+..+.+....+++||+.||..|+.||++.+.+
T Consensus         2 ~t~~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~i   81 (117)
T d1q1ca2           2 LTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYL   81 (117)
T ss_dssp             CCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCccCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEeeccccceeeecceeeeCcHHHHhhhcchhhCeEEEEE
Confidence            45668899999999999999999999999999999997778998888999888777779999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCceeeeeeccccccc
Q psy4385         221 QPQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIK  255 (473)
Q Consensus       221 ~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~  255 (473)
                      ||+++||..|.+...|||++.+.|+++|.+|++.+
T Consensus        82 p~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          82 KPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             CGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             CHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            99999999998877899999999999999998754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.9e-20  Score=148.34  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=109.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+++.|+.+++.|+|++|+..|+++|               ..+|.++.+|+++|.||+++|+|++|+..|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al---------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAI---------------KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hcCCcchhhhhcccccccccccccccchhhhhHHHh
Confidence            35678899999999999999999999999               667778999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +|+++.+|+++|.++..+|+|++|+.+|+++++++|+++.++..++.+..
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999888753

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2e-19  Score=144.95  Aligned_cols=110  Identities=26%  Similarity=0.488  Sum_probs=101.3

Q ss_pred             ccCCCCCCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhccc
Q psy4385         139 EDISPTHDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKY  212 (473)
Q Consensus       139 ~~~~~~~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~  212 (473)
                      .++++..|+++.++++++|.|...|..+++|+|||++++ ||++|++     .|+.|.+|.+.   +++||+.+|..|+.
T Consensus         3 ~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~---~i~G~~~~l~~M~~   79 (120)
T d1q1ca1           3 VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGE---VIKAWDIAIATMKV   79 (120)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTS---SCHHHHHHHTTCCT
T ss_pred             eeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCc---eeeeeeeeeccccC
Confidence            356777899999999999999889999999999999998 9999996     37899999987   99999999999999


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         213 KEKSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       213 gE~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      ||++.+.+||.++||..+... .||+++.+.|+++|.+++
T Consensus        80 Ge~~~~~ip~~laYG~~g~~~-~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          80 GEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             TCEEEEEECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEEE
T ss_pred             CcEEEEEECHHHhCCCcCCCC-CCCcCCcEEEEEEEEEEe
Confidence            999999999999999998753 699999999999999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-19  Score=151.49  Aligned_cols=122  Identities=25%  Similarity=0.401  Sum_probs=115.1

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCD  342 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~  342 (473)
                      +..++.|..++..|+.+|+.|+|.+|+..|++++               .++|.+..+|+++|.|++.+|++++|+.+|+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI---------------ELNPSNAIYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcc---------------ccchhhhhhhhhhHHHHHhccccchHHHHHH
Confidence            4567889999999999999999999999999999               6777889999999999999999999999999


Q ss_pred             HHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         343 KAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       343 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      ++|+++|+++.+|+++|.++..+|+|++|+.+|++++.++|++..++..+..+...+
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888876554

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-19  Score=141.87  Aligned_cols=102  Identities=25%  Similarity=0.489  Sum_probs=94.5

Q ss_pred             CceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec------------eeeEEeCCCcccCCcHHHHHHHHhcccCc
Q psy4385         148 GIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG------------TFSFVLGEGSEYDIPENLEKALEKFKYKE  214 (473)
Q Consensus       148 ~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~------------~~~~~lg~~~~~~~~~gle~al~~m~~gE  214 (473)
                      .+.|+|+++|.|...|+.|+.|+|||.|++ ||++||+.            |+.|.+|.+.   +++||+.++..|+.||
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~---~i~Gl~~~v~~M~~Ge   78 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK---VIRGWDEALLTMSKGE   78 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTS---SCHHHHHHHTTCCTTC
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccc---cccchheechhhcCCc
Confidence            468999999999889999999999999999 99999863            6899999997   9999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         215 KSRLFVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       215 ~~~~~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      ++.+.+||.++||..+.+...||+++.+.|+++|.+++
T Consensus        79 ~~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          79 KARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            99999999999999998777899999999999998753

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.75  E-value=6.5e-19  Score=140.12  Aligned_cols=104  Identities=23%  Similarity=0.452  Sum_probs=82.4

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      .|+++.++++++|.|...|..|++|+|||.|++ +|++||+     .|+.|.+|.+.   +++||+.+|..|+.||++.+
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~---~i~G~~~~l~~M~~Ge~~~~   78 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQ---VIKAWDIGVATMKKGEICHL   78 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSS---SCHHHHHSTTTCCTTCCEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCc---EEeeeeeeehhccCCcEEEE
Confidence            478999999999999889999999999999998 9999986     37899999987   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeecccc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNFE  252 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~  252 (473)
                      .+||.++||..|... .|||++.+.|+++|.+++
T Consensus        79 ~ip~~layG~~g~~~-~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          79 LCKPEYAYGATGSLP-KIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             EC----CCCTTTCTT-TSCTTCCCEEEEEEEEEE
T ss_pred             EECHHHhCCCCCCCC-cCCcCCeEEEEEEEEEEC
Confidence            999999999998764 799999999999998763

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.9e-18  Score=134.12  Aligned_cols=100  Identities=19%  Similarity=0.488  Sum_probs=92.3

Q ss_pred             CceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         148 GIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       148 ~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      ++.++++++|+|...|..+++|++||.|++ +|++|++     .|..|.+|.+.   +++||+.++..|++||++.+.+|
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~---~i~G~~~~l~~M~~Ge~~~~~ip   77 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQE---VIRGWEEGVAQMSVGQRAKLTIS   77 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCC---SCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcch---hheeehhhhcCccCCCEEEEEEC
Confidence            467899999999888999999999999998 9999986     37899999887   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      |.++||..+.... ||+++.+.|+++|.++
T Consensus        78 ~~laYG~~g~~~~-IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          78 PDYAYGATGHPGI-IPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGGTTTTTCBTTT-BCTTCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCC-CCcCCeEEEEEEEEEE
Confidence            9999999997654 9999999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.5e-18  Score=153.66  Aligned_cols=103  Identities=28%  Similarity=0.472  Sum_probs=98.4

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+++.|+.+|+.|+|++|+..|++||               .++|.++.+|+|+|.||+++|+|++|+.+|++|++++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal---------------~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAI---------------TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            6789999999999999999999999999               6677789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      |+++.+|+++|.+|..+|+|++|+.+|++|+.++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999999998654

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.2e-17  Score=133.40  Aligned_cols=103  Identities=20%  Similarity=0.402  Sum_probs=94.4

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      -|+++.++++++|+|...|+.+++|++||.|++ ||++|++.     ++.|.+|.+.   +++||+.||..|+.|+++.+
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~---~i~G~~~~l~~M~~G~~~~~   80 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQ---VIKGWDVGIPKLSVGEKARL   80 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSS---SCHHHHHHGGGCCTTCEEEE
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCc---eeeehhhhcccccCCCEEEE
Confidence            367899999999999888999999999999998 99999873     6788999887   99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      .+||.++||..|.+. .||+++.+.|+++|.++
T Consensus        81 ~iP~~laYG~~g~~~-~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          81 TIPGPYAYGPRGFPG-LIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EECGGGTTTTTCBTT-TBCTTCCEEEEEEEEEE
T ss_pred             EechHHeecCcCCCC-ccCcCCeEEEEEEEEEe
Confidence            999999999999764 39999999999999764

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=1.5e-16  Score=134.54  Aligned_cols=106  Identities=15%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec---eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEec
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG---TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQ  221 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~---~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~  221 (473)
                      +.++..+++++|.|...|..|++|+|||+|++ +|++|++.   ...|.++.+.   +++||+.+|..|+.||++.|.||
T Consensus        33 ~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~~~~~~---~i~G~~e~l~~M~~Ge~~~v~iP  109 (160)
T d1jvwa_          33 PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE---VIKGWTEALQLMREGDRWRLFIP  109 (160)
T ss_dssp             TTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGGG---SCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccccCccc---cchhHHHHhcCccccceeEEEeC
Confidence            56789999999999888999999999999998 99999984   4557777666   99999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeeeeccccccc
Q psy4385         222 PQHLWSGKGNDKLGVPSNKPATYTITMNNFEKIK  255 (473)
Q Consensus       222 ~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~~~  255 (473)
                      |.++||..|... .||+++.+.|+++|.++....
T Consensus       110 p~laYG~~g~~~-~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         110 YDLAYGVTGGGG-MIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             GGGTTTTTCSSS-SSCTTCCEEEEEEEEEEGGGC
T ss_pred             HHHCcCCCCCCC-CcCcCCcEEEEEEEEEEecCC
Confidence            999999988754 499999999999999997643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=130.94  Aligned_cols=116  Identities=28%  Similarity=0.353  Sum_probs=102.9

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .|..++++|+.+|..|+|.+|+.+|+++|               .++|.++.+++|+|.||.++|+|++|+.+|++++++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al---------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   67 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAK---------------ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence            57789999999999999999999999999               666677899999999999999999999999999999


Q ss_pred             CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         348 EPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       348 ~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +|.+.       ++|+++|.++..+++|++|+.+|.+++..+|+ +.+...+..+.+.+
T Consensus        68 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            98875       57788899999999999999999999999875 56666666665544

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.65  E-value=3.7e-16  Score=138.04  Aligned_cols=101  Identities=15%  Similarity=0.329  Sum_probs=90.8

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEE
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLF  219 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~  219 (473)
                      +.++..+++++|.| .+|..+++|+|||.|++ +|++|++.     |++|.+|  .   +++||+.||..|++|+++.+.
T Consensus        97 ~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~---~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          97 PSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--Q---VIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             TTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--G---SCHHHHHHHTTCCTTCEEEEE
T ss_pred             cCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--c---cchhHHHHhcCCCCCCEEEEE
Confidence            46788999999998 68999999999999999 99999973     5666665  3   999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCceeeeeeccccc
Q psy4385         220 VQPQHLWSGKGNDKLGVPSNKPATYTITMNNFEK  253 (473)
Q Consensus       220 i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~~~  253 (473)
                      |||.++||..|... .|||++.+.|+++|.++.+
T Consensus       171 iP~~laYG~~g~~~-~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGG-PIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSS-SCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCC-CcCcCCcEEEEEEEEEEEc
Confidence            99999999998754 5999999999999998865

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=7.7e-16  Score=136.50  Aligned_cols=99  Identities=24%  Similarity=0.494  Sum_probs=90.6

Q ss_pred             CCCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEec-----eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEE
Q psy4385         145 HDGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQEG-----TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRL  218 (473)
Q Consensus       145 ~d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~~-----~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~  218 (473)
                      -+.++..+++++|+| ..|..+++|+|||.|++ +|++|++.     |+.|.+|.     +++||+.+|..|++|+++.+
T Consensus       105 ~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~~-----vi~g~~e~l~~m~~G~k~~~  178 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG-----VIPGWTEGLKNIKKGGKIKL  178 (210)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGGG-----SCHHHHHHGGGSCTTCEEEE
T ss_pred             ccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccCc-----cchhHHHHHhhccCCCEEEE
Confidence            356889999999998 89999999999999999 99999973     68888863     99999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCceeeeeeccc
Q psy4385         219 FVQPQHLWSGKGNDKLGVPSNKPATYTITMNNF  251 (473)
Q Consensus       219 ~i~~~~~~~~~g~~~~~ip~~~~~~y~i~L~~~  251 (473)
                      .|||.++||..|.+  .|||++.++|+++|.++
T Consensus       179 ~iP~~laYG~~g~~--~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         179 VIPPELAYGKAGVP--GIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             EECGGGTTTTTCBT--TBCTTCCEEEEEEEEEE
T ss_pred             EECHHHCcCCCCCC--CCCcCCcEEEEEEEEEE
Confidence            99999999999975  49999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-16  Score=126.42  Aligned_cols=113  Identities=12%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             HhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhhCC
Q psy4385         273 KERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK---QAKPAKDQCDKAIELEP  349 (473)
Q Consensus       273 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~---~~~~A~~~~~~al~~~p  349 (473)
                      .++.+.++..++|.+|...|++++               .++|.++.+++|+|.|+++.+   ++.+|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL---------------~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEK---------------AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---------------HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHH---------------hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            356778899999999999999999               667778999999999998755   55679999999999998


Q ss_pred             CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         350 NN--EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       350 ~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      .+  +.+||++|.+|..+|+|++|+.+|+++++++|+|..++..+..+..++.
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            66  4599999999999999999999999999999999999998888876653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-15  Score=140.04  Aligned_cols=145  Identities=24%  Similarity=0.295  Sum_probs=122.4

Q ss_pred             CCCCCceeeeeeccccccccccccCchhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHH
Q psy4385         237 PSNKPATYTITMNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKT  316 (473)
Q Consensus       237 p~~~~~~y~i~L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~  316 (473)
                      |-.....+++.+..+.+......++   ....+..+..+|..++..|+|++|+..|++|+               .++|.
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~~~---~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al---------------~l~p~   69 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQAL---------------AIRPD   69 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh---------------ccCCC
Confidence            3334455666666665544333333   23468899999999999999999999999999               66667


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      ++.+|+++|.||.++|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  149 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  149 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999988777666665


Q ss_pred             HHH
Q psy4385         397 QKL  399 (473)
Q Consensus       397 ~~~  399 (473)
                      ...
T Consensus       150 ~~~  152 (259)
T d1xnfa_         150 QKL  152 (259)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=126.35  Aligned_cols=122  Identities=19%  Similarity=0.197  Sum_probs=104.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+.+.|..++..|+|+.|+..|.++..                  .++.+++|+|.||+.+|+|++|+.+|++||++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l   65 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD------------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR   65 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence            355777899999999999999999987531                  12557999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN----------------KAAVQKLTQTKQKLREQKIKEK  407 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~----------------~~~~~~l~~~~~~~~~~~~~~k  407 (473)
                      +|+++.+|+++|.+|..+|+|++|+.+|++|+...|.|                ..++..++.+...+++..+...
T Consensus        66 dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999876654                2566778888877766665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=8.1e-15  Score=122.60  Aligned_cols=116  Identities=19%  Similarity=0.228  Sum_probs=101.6

Q ss_pred             hcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHc----------CChhHHHHHHHHH
Q psy4385         275 RGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKL----------KQAKPAKDQCDKA  344 (473)
Q Consensus       275 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl----------~~~~~A~~~~~~a  344 (473)
                      .+..+-+.+.|++|+..|++|+               +++|.++.+++++|.+++.+          +.+++|+..|++|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al---------------~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTY---------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHH---------------hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            3556677888999999999999               77888999999999999865          4457899999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNE-----------PELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      ++++|+++.+|+++|.+|..+|+           |++|+.+|++|++++|+|..++..|+.+.+......+.
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764           79999999999999999999999999987666544443

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=1.8e-14  Score=116.87  Aligned_cols=101  Identities=17%  Similarity=0.279  Sum_probs=89.6

Q ss_pred             CCCceEEEEecCCCcCCCCCCCeEEEEEEeee-CCeEEEe-----ceeeEEeCCCcccCCcHHHHHHHH------hcccC
Q psy4385         146 DGGIRREILEEGASFSTPKDGANVEITLKGEC-EGKVFQE-----GTFSFVLGEGSEYDIPENLEKALE------KFKYK  213 (473)
Q Consensus       146 d~~i~k~i~~~g~g~~~p~~~~~v~~~~~g~~-~g~~~~~-----~~~~~~lg~~~~~~~~~gle~al~------~m~~g  213 (473)
                      +.++..+++++|.| ..|+.+++|+|||+|++ +|++||+     .+..|.+|.+.   ++++|+.++.      .|++|
T Consensus         7 psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~---~i~g~~~~i~g~~~l~~M~~G   82 (125)
T d1u79a_           7 PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGE---VIKGWDQGILGSDGIPPMLTG   82 (125)
T ss_dssp             TTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSS---SCHHHHHHHHCBTTBCCCBTT
T ss_pred             CCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccc---cccchhhhccchhhcccccCC
Confidence            45788999999999 68999999999999999 9999997     37899999987   9999999885      49999


Q ss_pred             cEEEEEecCCCCCCCCCCCC----CCCCCCCCceeeeeecc
Q psy4385         214 EKSRLFVQPQHLWSGKGNDK----LGVPSNKPATYTITMNN  250 (473)
Q Consensus       214 E~~~~~i~~~~~~~~~g~~~----~~ip~~~~~~y~i~L~~  250 (473)
                      +++.+.+||+++||..|...    ..||+++.+.|+++|..
T Consensus        83 ~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~  123 (125)
T d1u79a_          83 GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG  123 (125)
T ss_dssp             CEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEE
T ss_pred             CEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEE
Confidence            99999999999999987532    23899999999999864

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.52  E-value=3.4e-15  Score=124.66  Aligned_cols=84  Identities=31%  Similarity=0.564  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCC-------------CCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCc
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKT-------------RGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAY  112 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~-------------~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ay  112 (473)
                      ++.||.|++||++++.||++|+||+.             .+.|+.|.+|.++++|||+++|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            68899999999999999999999963             34699999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEeee
Q psy4385         113 GKQGSPPTIPPDSTLVFEVEMISWE  137 (473)
Q Consensus       113 g~~g~~~~ip~~~~l~~~v~l~~~~  137 (473)
                      |+        .+..+++.+....+.
T Consensus        82 G~--------~d~~~v~~vp~~~f~   98 (151)
T d1ix5a_          82 GN--------RNEMLIQKIPRDAFK   98 (151)
T ss_dssp             CS--------CCSTTBCCEETHHHH
T ss_pred             cc--------cccCccceehhhhcc
Confidence            98        445566666554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.51  E-value=1.4e-14  Score=115.54  Aligned_cols=95  Identities=11%  Similarity=0.062  Sum_probs=86.4

Q ss_pred             HHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCC
Q psy4385         270 KLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEP  349 (473)
Q Consensus       270 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p  349 (473)
                      ....+.|..+++.|++.+|+..|++++               ..+|.++.+|.++|.|+.+++++++|+.+++++++++|
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVC---------------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhc---------------ccccccchhhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            345678999999999999999999999               66677789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy4385         350 NNEKAFFRRGNAYLDLNEPELAEKDFQKVL  379 (473)
Q Consensus       350 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  379 (473)
                      +++.+|+.+|.+|..+|++++|++.|+++|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999876

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.50  E-value=2.6e-14  Score=107.08  Aligned_cols=83  Identities=19%  Similarity=0.365  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCCC
Q psy4385          46 PSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPDS  125 (473)
Q Consensus        46 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~~  125 (473)
                      +..||.|+|+|+++. ||+.|+++..  ..+.|.+|.+.++|||+++|.+|++|+++.|.|++...|+..+.     ++.
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aGk   73 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QSK   73 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GSC
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CCC
Confidence            678999999999998 9999998743  47899999999999999999999999999999999999998663     789


Q ss_pred             ceEEEEEEEee
Q psy4385         126 TLVFEVEMISW  136 (473)
Q Consensus       126 ~l~~~v~l~~~  136 (473)
                      ++.|+|+|+++
T Consensus        74 ~~~f~V~v~~V   84 (85)
T d1hxva_          74 PVTFEVVLKAI   84 (85)
T ss_dssp             CCEEEEEECCB
T ss_pred             cEEEEEEEEEe
Confidence            99999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.49  E-value=1.5e-14  Score=122.68  Aligned_cols=117  Identities=20%  Similarity=0.159  Sum_probs=96.1

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|+.++..|+|++|+..|++||.+.+........   ...+..+.+|.|+|.||.++|+|+.|+.+|+++|.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            345556667999999999999999999999887764332111   23345678999999999999999999999999998


Q ss_pred             hCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         347 LEPN-----------NEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       347 ~~p~-----------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      +.|.           ...+|+++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            7542           346899999999999999999999999999977543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.7e-14  Score=133.90  Aligned_cols=130  Identities=8%  Similarity=-0.031  Sum_probs=107.2

Q ss_pred             ccccccCchhHHHhhHHHHhhcchhhhcc-cHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy4385         255 KDTWQLNSDEKLEQGKLLKERGTTYFKQD-KFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ  333 (473)
Q Consensus       255 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~  333 (473)
                      ...+....+..+....++..+|..+...+ ++++|+..|++++               .++|.+..+|.++|.++.++|+
T Consensus        63 l~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al---------------~~~p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          63 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---------------EEQPKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------HHHHhhhhHHHHHhHHHHhhcc
Confidence            33333344555666777777887777655 4788888888887               6777788999999999999999


Q ss_pred             hhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         334 AKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       334 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++|+..++++++++|.+..+|+++|.++..+++|++|+.+|.++++++|+|..++..++.+...+
T Consensus       128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999988888776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-13  Score=129.27  Aligned_cols=125  Identities=16%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK-QAKPAKDQCDKA  344 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~-~~~~A~~~~~~a  344 (473)
                      +..+.++..+|..+.+.+.+++|+..|++||               +++|.+..+|+++|.|+..++ ++++|+..++++
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai---------------~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~a  104 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAI---------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI  104 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHH---------------HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            4678888899999999999999999999999               788889999999999999987 599999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIK  405 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  405 (473)
                      ++++|++..+|+++|.++..+|++++|+.+|.++++++|+|..++..++.+...++...++
T Consensus       105 l~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999999999999998887665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-13  Score=133.16  Aligned_cols=132  Identities=16%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCC------------Ch-------hHHHHHHHHHHHHHHHHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGF------------EG-------EQETERKKTLTACHLNAAM  326 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~nla~  326 (473)
                      ...+..+..+|..++..|++++|+..|++++...+.....            ..       .......|.....+..++.
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            3445567777888888888888888888888544321100            00       0001222333445555555


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      ++.++|++++|+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|++..++..|+.++.
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            55555556666666666655555555555556666666666666666666666666655555555555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=9.9e-13  Score=120.13  Aligned_cols=128  Identities=12%  Similarity=0.093  Sum_probs=108.1

Q ss_pred             chhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHH
Q psy4385         277 TTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFF  356 (473)
Q Consensus       277 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~  356 (473)
                      ..+....+++.|+..+.+++....           ..++..+.+++++|.+|.++|+|++|+.+|+++|+++|+++.+|+
T Consensus         7 ~~~~~~~~~e~al~~~~e~l~~~~-----------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~   75 (259)
T d1xnfa_           7 VPLQPTLQQEVILARMEQILASRA-----------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN   75 (259)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSSC-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHhhh-----------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHh
Confidence            344556778899999998874322           124557889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4385         357 RRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       357 ~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++..++ ...|.+.+..
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~~  134 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA-QDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH-HHHHHHHHhh
Confidence            9999999999999999999999999999999999999998887666544 3455555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-12  Score=114.19  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=93.9

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+.++|..++..|+|++|+..|++||               +++|..+.+|+|+|.||.++|+|++|+.+|++|+...
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl---------------~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSI---------------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHH---------------HHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            4578899999999999999999999999               6777789999999999999999999999999999876


Q ss_pred             CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy4385         349 PNN----------------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN  385 (473)
Q Consensus       349 p~~----------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~  385 (473)
                      +.+                ..++|++|.++..+|++++|+..|.+|+.+.|+.
T Consensus       101 ~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            543                3789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4e-13  Score=127.09  Aligned_cols=110  Identities=14%  Similarity=0.173  Sum_probs=92.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      +..+..+|..++..|++++|+..|++++               ...|....+++++|.++.++|++++|+..|+++++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  236 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAAL---------------SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  236 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccc---------------ccccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence            4456778889999999999999999999               5555668889999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         349 PNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      |+++.+|+++|.+|..+|+|++|+..|++|++++|++..++..+.
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  281 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG  281 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhH
Confidence            999999999999999999999999999999999998877655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.32  E-value=1.3e-11  Score=97.75  Aligned_cols=88  Identities=17%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      .++++|.++++.|++.+|+..+++++.++|+++.+|+.+|.++..++++++|+.+|++|++++|++..++..|+.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q psy4385         400 REQKIKEK  407 (473)
Q Consensus       400 ~~~~~~~k  407 (473)
                      ++..++.+
T Consensus        98 g~~~~A~~  105 (112)
T d1hxia_          98 HNANAALA  105 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            77766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=8.9e-12  Score=109.12  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         319 ACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       319 ~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      ..+.+.|.++++.|+|++|+..|++||+++|.++.+|+++|.||..+|+|++|+.+|.+|++++|++..++..++.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy4385         399 LREQKIKEKQVYANMF  414 (473)
Q Consensus       399 ~~~~~~~~k~~~~~~f  414 (473)
                      +++..++.. .|++++
T Consensus        85 l~~~~~A~~-~~~~al   99 (201)
T d2c2la1          85 MESYDEAIA-NLQRAY   99 (201)
T ss_dssp             TTCHHHHHH-HHHHHH
T ss_pred             CCCHHHHHH-HHHHHH
Confidence            987776543 445444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.2e-12  Score=123.65  Aligned_cols=121  Identities=20%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             hHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy4385         264 EKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDK  343 (473)
Q Consensus       264 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~  343 (473)
                      ..+..+..+..+|..++..++|++|+..|.+++...+               .....+.++|.++.++|++++|+..|++
T Consensus       198 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~  262 (388)
T d1w3ba_         198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---------------NHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh---------------hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3345567888999999999999999999999985433               3344455555555555555555555555


Q ss_pred             HhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         344 AIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       344 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      +++++|+++.+++++|.++..+|++++|+..|++++...|.+..++..++.+....
T Consensus       263 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            55555555555555555555555555555555555555554444444444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-12  Score=99.37  Aligned_cols=89  Identities=12%  Similarity=-0.009  Sum_probs=74.6

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhC
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELE  348 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~  348 (473)
                      ++.+.++|+.+++.|+|..|+..|++|++..+......        +....++.|+|.|+.++|+|++|+.+|+++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            56788999999999999999999999998766532221        2346789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhc
Q psy4385         349 PNNEKAFFRRGNAYLDL  365 (473)
Q Consensus       349 p~~~ka~~~~g~a~~~l  365 (473)
                      |+++.++++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999988765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-11  Score=97.24  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      -+.+.|..+++.|+|++|+..|+++|.++|+++.+|+.+|.+|..+|+|++|+.+|.++++++|++..++..++.+...+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy4385         400 REQKIKEKQVYANMFD  415 (473)
Q Consensus       400 ~~~~~~~k~~~~~~f~  415 (473)
                      ++..++.+ .|++.+.
T Consensus        85 ~~~~~A~~-~~~~a~~   99 (117)
T d1elwa_          85 NRFEEAKR-TYEEGLK   99 (117)
T ss_dssp             TCHHHHHH-HHHHHHT
T ss_pred             cCHHHHHH-HHHHHHH
Confidence            77665544 4555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.4e-12  Score=96.07  Aligned_cols=82  Identities=11%  Similarity=0.020  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN-------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQ  390 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~  390 (473)
                      +.-++++|..+++.|+|..|+.++++|+++.|.+       ..+|+++|.++.++|+|++|+..|+++|+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4457899999999999999999999999886543       578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4385         391 KLTQTKQKL  399 (473)
Q Consensus       391 ~l~~~~~~~  399 (473)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998877655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=1.2e-10  Score=100.10  Aligned_cols=119  Identities=19%  Similarity=0.112  Sum_probs=105.7

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCC-------CChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGG-------FEGEQETERKKTLTACHLNAAMCLLKLKQAKPAK  338 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~  338 (473)
                      +.....+...|+.++..|++++|+..|.+|+.+......       +...+...+.+....++.+++.+++.+|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456778999999999999999999999999998664321       2245566788899999999999999999999999


Q ss_pred             HHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCC
Q psy4385         339 DQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKV-------LQIDPN  384 (473)
Q Consensus       339 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a-------l~l~P~  384 (473)
                      .+|++++.++|.+..+|.+++.+|..+|++++|+..|+++       +-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       556775

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3e-11  Score=102.08  Aligned_cols=99  Identities=19%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4385         317 LTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTK  396 (473)
Q Consensus       317 ~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  396 (473)
                      .+..+...|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..++..++.+.
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34557789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q psy4385         397 QKLREQKIKEKQVYANMFDK  416 (473)
Q Consensus       397 ~~~~~~~~~~k~~~~~~f~~  416 (473)
                      ..+++..++.. .|.+....
T Consensus        89 ~~~g~~~eA~~-~~~~a~~~  107 (159)
T d1a17a_          89 MALGKFRAALR-DYETVVKV  107 (159)
T ss_dssp             HHTTCHHHHHH-HHHHHHHH
T ss_pred             HHcCCHHHHHH-HHHHHHHc
Confidence            98887776654 45555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.3e-11  Score=98.84  Aligned_cols=87  Identities=15%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQ  397 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  397 (473)
                      +..+.++|.++++.++|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|.+|+.++|++..++..++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34667999999999999999999999999999999999999999999999999999999999999998876666666655


Q ss_pred             HHHHHHH
Q psy4385         398 KLREQKI  404 (473)
Q Consensus       398 ~~~~~~~  404 (473)
                      .++....
T Consensus        84 ~lg~~~~   90 (128)
T d1elra_          84 RIGNSYF   90 (128)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2e-11  Score=115.10  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             HHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC
Q psy4385         272 LKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN  351 (473)
Q Consensus       272 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~  351 (473)
                      ..++|..+++.|+|++|+..|++++               +.+|.++.+|.++|.|+..+|+++.|+..+.++++++|++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al---------------~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAV---------------QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH---------------HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH---------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            4578999999999999999999999               5566678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy4385         352 EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK  386 (473)
Q Consensus       352 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~  386 (473)
                      ..+++++|.+|..+|++++|+..|.+++.++|.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccccccccccccccchhhHHHhccchH
Confidence            99999999999999999999999999999999754

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2.9e-10  Score=88.15  Aligned_cols=91  Identities=21%  Similarity=0.405  Sum_probs=76.7

Q ss_pred             CCCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCC
Q psy4385          44 TTPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPP  123 (473)
Q Consensus        44 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~  123 (473)
                      +.++.||.|+|+|+++. ||+.+.+..  ...+.|.+|.+.+++||+++|.||++|++..|.+.....|....     -+
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~--~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~-----la   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN-----LK   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTE--EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTT-----TT
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCc--ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchh-----hC
Confidence            45788999999999986 898887642  34689999999999999999999999999999998777775533     37


Q ss_pred             CCceEEEEEEEeeeeccCC
Q psy4385         124 DSTLVFEVEMISWEAEDIS  142 (473)
Q Consensus       124 ~~~l~~~v~l~~~~~~~~~  142 (473)
                      +.++.|.|+|.++....++
T Consensus        85 GK~v~f~V~v~~i~~~~lP  103 (106)
T d1l1pa_          85 GKAAKFAINLKKVEERELP  103 (106)
T ss_dssp             TCCEEEEEEEEEEECCCCS
T ss_pred             CCEEEEEEEEEEeccccCC
Confidence            8999999999999876554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-10  Score=114.31  Aligned_cols=119  Identities=13%  Similarity=0.027  Sum_probs=84.0

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      .+..+..+.++|..+.+.+++..|+..|.+++               ...  ...++.++|.++..+++|++|+.+|.+|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------~~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A  178 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC---------------SYI--CQHCLVHLGDIARYRNQTSQAESYYRHA  178 (497)
T ss_dssp             ---------------------------CCHHH---------------HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh---------------CCC--HHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34556677788888888888888888888887               322  3568899999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLR  400 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  400 (473)
                      ++++|++..+|+++|.++...|++.+|+.+|.+|+.++|..+.++..|..+..+..
T Consensus       179 ~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999998876543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=5e-10  Score=95.36  Aligned_cols=93  Identities=16%  Similarity=0.078  Sum_probs=83.2

Q ss_pred             HHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy4385         265 KLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKA  344 (473)
Q Consensus       265 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~a  344 (473)
                      ....+..+.++|.++++.|+|.+|+..|++||               +++|.++.+|+++|.+|..+|+|+.|+.+|+++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al---------------~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEAL---------------EIDPSNTKALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhh---------------hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence            34567778899999999999999999999999               556677899999999999999999999999999


Q ss_pred             hhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy4385         345 IELEPNNEKAFFRRGNAYLDLNEPELAE  372 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~lg~~~~A~  372 (473)
                      ++++|+|..++..++.++..+..+.++.
T Consensus       138 l~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         138 QEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988777766654

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.95  E-value=2.8e-10  Score=89.49  Aligned_cols=90  Identities=21%  Similarity=0.452  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEEEEEEecCCCEEeccCCCCccEEEEeCCCccchhHHHHhccCCCCcEEEEEecCCCCcCCCCCCCCCCCC
Q psy4385          45 TPSAGCKVKVHYTGTLLDGTVFDSSKTRGEPFEFDLGKGQVIKAWDRGIATMKKDEVAVFTCKPEYAYGKQGSPPTIPPD  124 (473)
Q Consensus        45 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~v~i~~~~ayg~~g~~~~ip~~  124 (473)
                      .++.||.|+|+|.++. ||+.+...  ....+.|.+|.+.++|||+++|.||++|+++.|.++....|.....     ++
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~--~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----aG   94 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGG--KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KG   94 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTC--EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SS
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCC--ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----CC
Confidence            4788999999999998 89888765  2356899999999999999999999999999998887777766433     78


Q ss_pred             CceEEEEEEEeeeeccCC
Q psy4385         125 STLVFEVEMISWEAEDIS  142 (473)
Q Consensus       125 ~~l~~~v~l~~~~~~~~~  142 (473)
                      .++.|.|+|.++....++
T Consensus        95 k~~~f~v~v~~Ik~~~lP  112 (113)
T d1t11a3          95 KAAKFAIKVNKVEARELP  112 (113)
T ss_dssp             CEEEECCCEEEEEEEECC
T ss_pred             CeEEEEEEEEEEEeccCC
Confidence            899999999999876554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.95  E-value=1.5e-09  Score=92.24  Aligned_cols=89  Identities=16%  Similarity=0.113  Sum_probs=79.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+.++|.++++.++|.+|+..|++++               .++|.+..+|+++|.|+..+|+|++|+.+|.++++
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al---------------~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKAL---------------GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhh---------------hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667789999999999999999999999               77778899999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHH
Q psy4385         347 LEPNNEKAFFRRGNAYLDLNEPEL  370 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a~~~lg~~~~  370 (473)
                      ++|+|..++..++.+...++.+.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999888777665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.9e-10  Score=88.88  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=81.4

Q ss_pred             cccccccccccCchhHHHhhHHHHhhcchhhh---cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy4385         250 NFEKIKDTWQLNSDEKLEQGKLLKERGTTYFK---QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAM  326 (473)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~---~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  326 (473)
                      +++++.+.|.......+..+..+.+.|..+++   .+++.+|+..|++++...+             .+....+++++|.
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-------------~~~~~~~~~~Lg~   80 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------------KEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-------------CchHHHHHHHHHH
Confidence            44445555555555566678899999999986   4567789999999994322             3445679999999


Q ss_pred             HHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh
Q psy4385         327 CLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD  364 (473)
Q Consensus       327 ~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  364 (473)
                      ||.++|+|++|+.+++++|+++|++..|+..++.+..+
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888876554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.6e-09  Score=92.27  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=81.0

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+.++|.++++.|+|.+|+..|+++|               .++|.++.+++++|.||..+|+|++|+.+|++++++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al---------------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKAL---------------ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhh---------------hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34567789999999999999999999999               677778999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAE  372 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~  372 (473)
                      +|+|..+...++.++..+.++.+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.87  E-value=1.8e-09  Score=90.18  Aligned_cols=84  Identities=18%  Similarity=0.091  Sum_probs=76.5

Q ss_pred             hhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         268 QGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       268 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      .+..+.++|.++++.++|.+|+..|++||               .++|.+..+|+++|.||..+|+|++|+.+|.+++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al---------------~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVL---------------KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccc---------------cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567789999999999999999999999               777788999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcC
Q psy4385         348 EPNNEKAFFRRGNAYLDLN  366 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg  366 (473)
                      +|+|..+...++.+..++.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999988888776553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1e-08  Score=94.94  Aligned_cols=139  Identities=16%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|+.|...++|++|+..|.+|+.+....         ...+..+.+|.++|.||.+++++++|+.++++++.
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~---------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA---------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            456778889999999999999999999999664321         11344578999999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNN------EKAFFRRGNAYLD-LNEPELAEKDFQKVLQIDPNN------KAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      +.+.+      ..++.++|.+|.. +++|++|+..|++|+.+.+.+      ..++..++.+...++++.++.. .|.++
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~~~  184 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKL  184 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHHHH
Confidence            86554      5778899988854 699999999999999875432      2346667777776665554433 45544


Q ss_pred             hh
Q psy4385         414 FD  415 (473)
Q Consensus       414 f~  415 (473)
                      ..
T Consensus       185 ~~  186 (290)
T d1qqea_         185 IK  186 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=4.8e-10  Score=92.92  Aligned_cols=109  Identities=11%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             eccccccccccccCchhHHHhhHHHHhhcchhhhc----------ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHH
Q psy4385         248 MNNFEKIKDTWQLNSDEKLEQGKLLKERGTTYFKQ----------DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTL  317 (473)
Q Consensus       248 L~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~----------~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      +..|+++...++......+..+..+..+|.+++..          +.+++|+..|++|+               +++|.+
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---------------~l~P~~   74 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---------------LIDPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---------------HHCTTC
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---------------Hhcchh
Confidence            44566666677767777888899999999998854          55688999999999               777888


Q ss_pred             HHHHHHHHHHHHHcC-----------ChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy4385         318 TACHLNAAMCLLKLK-----------QAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELA  371 (473)
Q Consensus       318 ~~~~~nla~~~~kl~-----------~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A  371 (473)
                      ..+|+|+|.+|..+|           .|..|+.+|++|++++|++..++..++.+....+.|.++
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998875           479999999999999999999998888887666555554

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=98.80  E-value=2.8e-09  Score=88.19  Aligned_cols=66  Identities=18%  Similarity=0.485  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEEEeee-CCeEEEec------------------eeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCC
Q psy4385         163 PKDGANVEITLKGEC-EGKVFQEG------------------TFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQ  223 (473)
Q Consensus       163 p~~~~~v~~~~~g~~-~g~~~~~~------------------~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~  223 (473)
                      ..+|+.|++||.+++ +|++||+.                  |++|.+|.+.   +++||+.||..|+.|++..|.++|.
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~---~ipglE~al~gm~~Ge~~~v~i~p~   78 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQ---LIQGFEEAVLDMEVGDEKTVKIPAE   78 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTC---SCHHHHHHHHTCCTTCCCEEEECTT
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCC---ccHHHHHHHHhhcCCceeEEEeCHH
Confidence            357899999999999 99999863                  7999999998   9999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy4385         224 HLWSGKGN  231 (473)
Q Consensus       224 ~~~~~~g~  231 (473)
                      .+||....
T Consensus        79 ~ayG~~d~   86 (151)
T d1ix5a_          79 KAYGNRNE   86 (151)
T ss_dssp             TSSCSCCS
T ss_pred             Hhcccccc
Confidence            99997543

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=98.79  E-value=8.9e-09  Score=76.27  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=70.6

Q ss_pred             CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS  238 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~  238 (473)
                      ++..|+.|+|+|.|..+|+.|++   .+..|.+|.+.   +++||+.+|..|+.|++..|.+++...|+....      .
T Consensus         1 k~a~GD~V~idy~g~~dG~~~~~~~~~~~~~~lg~~~---~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l------a   71 (85)
T d1hxva_           1 KLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNS---FIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL------Q   71 (85)
T ss_dssp             CCCSSEEEEEEEEEEETTEECSTTCCSEEEEEETSSC---SCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG------G
T ss_pred             CCCCCCEEEEEEEEEECCEEcccccccCCCEEECCcc---cCchHHHHhccCcCCCeEEEEEEChhhcCcccC------C
Confidence            35679999999999999999987   47899999987   999999999999999999999999888887653      4


Q ss_pred             CCCceeeeeeccc
Q psy4385         239 NKPATYTITMNNF  251 (473)
Q Consensus       239 ~~~~~y~i~L~~~  251 (473)
                      +..+.|++.+..+
T Consensus        72 Gk~~~f~V~v~~V   84 (85)
T d1hxva_          72 SKPVTFEVVLKAI   84 (85)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCcEEEEEEEEEe
Confidence            5678999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=2.1e-08  Score=94.59  Aligned_cols=119  Identities=11%  Similarity=0.033  Sum_probs=106.1

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHhh
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQ--AKPAKDQCDKAIE  346 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~--~~~A~~~~~~al~  346 (473)
                      ...+...+..+...+++.+|+..|++++               ..+|.+..++.++|.++..+++  +..|+..+.++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l---------------~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCL---------------RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHH---------------HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            3456677888888999999999999999               6677789999999999988875  8899999999999


Q ss_pred             hCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNNEKAF-FRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKLREQ  402 (473)
Q Consensus       347 ~~p~~~ka~-~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  402 (473)
                      ++|.+..++ +++|.++...+.+++|+..++++++++|++..++..++.+...+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            999999986 57889999999999999999999999999999999999998876543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=3.7e-08  Score=77.24  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHcCC---hhHHHHHHHHHhhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy4385         318 TACHLNAAMCLLKLKQ---AKPAKDQCDKAIELEPNNE-KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       318 ~~~~~nla~~~~kl~~---~~~A~~~~~~al~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  393 (473)
                      ....++.|.|+.+..+   ..+++..++.++..+|.+. .++|.+|.+|+++|+|++|+.+++++|+++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5578899999988754   5689999999999999775 89999999999999999999999999999999999988877


Q ss_pred             HHHHHHH
Q psy4385         394 QTKQKLR  400 (473)
Q Consensus       394 ~~~~~~~  400 (473)
                      .+..++.
T Consensus       115 ~Ie~~~~  121 (124)
T d2pqrb1         115 MVEDKIQ  121 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.2e-07  Score=87.53  Aligned_cols=112  Identities=20%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             hhHHHHhhcchhhh-cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         268 QGKLLKERGTTYFK-QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       268 ~a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      .+..+..+|..++. .++|++|+..|++|+.+.+..         ...+....++.++|.++.++|+|.+|+..|++++.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~---------~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc---------CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            46677788888865 599999999999999765432         11344577899999999999999999999999999


Q ss_pred             hCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy4385         347 LEPNNE-------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAA  388 (473)
Q Consensus       347 ~~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~  388 (473)
                      ..+.+.       ..+++.|.++...++++.|...|.++++++|.....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            987764       356789999999999999999999999999976554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.50  E-value=3.5e-07  Score=76.00  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=74.7

Q ss_pred             HHHHHH--HHHHHHHcCChhHHHHHHHHHhhhCCCCH------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         318 TACHLN--AAMCLLKLKQAKPAKDQCDKAIELEPNNE------------KAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       318 ~~~~~n--la~~~~kl~~~~~A~~~~~~al~~~p~~~------------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      ..++.+  .|..++..|+|++|+..|++||++.|+++            .+|.++|.+|..+|+|++|+.++++++.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            334444  48889999999999999999999987653            5789999999999999999999999998754


Q ss_pred             CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4385         384 NN-----------KAAVQKLTQTKQKLREQKIKEKQVYANMF  414 (473)
Q Consensus       384 ~~-----------~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  414 (473)
                      .+           ..++..++.++..+++.+++-. .|++..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~-~~~~Al  127 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVV  127 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence            21           2356778888888876665443 444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=3.7e-07  Score=85.74  Aligned_cols=102  Identities=12%  Similarity=0.028  Sum_probs=84.9

Q ss_pred             ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcC----------ChhHHHHHHHHHhhhCCCCH
Q psy4385         283 DKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLK----------QAKPAKDQCDKAIELEPNNE  352 (473)
Q Consensus       283 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~----------~~~~A~~~~~~al~~~p~~~  352 (473)
                      +.+++|+..|.+++               .++|.+..+|++++.++..++          ++.+|+..++++++.+|++.
T Consensus        43 ~~~~~al~~~~~~l---------------~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          43 ELDESVLELTSQIL---------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             CCSHHHHHHHHHHH---------------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHH---------------HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence            34589999999999               667777888888877766554          47899999999999999999


Q ss_pred             HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHH
Q psy4385         353 KAFFRRGNAYLDLNE--PELAEKDFQKVLQIDPNNKAAVQ-KLTQTKQKL  399 (473)
Q Consensus       353 ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~P~~~~~~~-~l~~~~~~~  399 (473)
                      .+|+.+|.++..+++  +++|+..+.++++++|.+..++. .++.+....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~  157 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc
Confidence            999999999988875  89999999999999999988764 444554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.47  E-value=5.4e-08  Score=88.56  Aligned_cols=91  Identities=10%  Similarity=-0.046  Sum_probs=79.0

Q ss_pred             cchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHH
Q psy4385         276 GTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAF  355 (473)
Q Consensus       276 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~  355 (473)
                      +..++..|++++|+..|++++               +.+|.+..++.+++.+++..|++++|+..++++++++|++..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al---------------~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~   67 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAI---------------KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   67 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHH---------------HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            345678899999999999999               66777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy4385         356 FRRGNAYLDLNEPELAEKDFQKVLQI  381 (473)
Q Consensus       356 ~~~g~a~~~lg~~~~A~~~~~~al~l  381 (473)
                      ..++.++...+..+++...+.+...+
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhhcc
Confidence            99999998888888777665554444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=2.2e-07  Score=86.57  Aligned_cols=106  Identities=12%  Similarity=0.016  Sum_probs=88.9

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..+..+...|..+...+++..|...|.+++...+..           .+.....+.++|.+++.+|+++.|+..+++++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-----------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-----------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345566778889999999999999999998664421           223455778999999999999999999999984


Q ss_pred             h------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy4385         347 L------EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDP  383 (473)
Q Consensus       347 ~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P  383 (473)
                      .      .|....+++.+|.+|..+|++++|+..|++|+++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            3      466778999999999999999999999999999864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.6e-08  Score=95.77  Aligned_cols=92  Identities=10%  Similarity=0.040  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy4385         312 ERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQK  391 (473)
Q Consensus       312 ~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  391 (473)
                      .+++.....+.++|.++.+.+++..|+..+.+++.++|.  .+++++|.++..+++|++|+.+|.+|++++|++..++..
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             -----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            556777889999999999999999999999999998864  789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy4385         392 LTQTKQKLREQKIK  405 (473)
Q Consensus       392 l~~~~~~~~~~~~~  405 (473)
                      |+.+....++..++
T Consensus       192 Lg~~~~~~~~~~~A  205 (497)
T d1ya0a1         192 LAILASSKGDHLTT  205 (497)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            99998776555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=3.5e-06  Score=71.48  Aligned_cols=99  Identities=9%  Similarity=-0.016  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCC----------------------HHHHHHHHHHHHhcCCHHHH
Q psy4385         314 KKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNN----------------------EKAFFRRGNAYLDLNEPELA  371 (473)
Q Consensus       314 ~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~----------------------~ka~~~~g~a~~~lg~~~~A  371 (473)
                      +-.....+.+.|..+...|+++.|+..|.+||.+.+..                      ..++.+++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            44556788899999999999999999999999986543                      26789999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4385         372 EKDFQKVLQIDPNNKAAVQKLTQTKQKLREQKIKEKQVYANM  413 (473)
Q Consensus       372 ~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  413 (473)
                      +.++++++.++|.+..++..+..+....++..+..+ .|.++
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~  127 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRV  127 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            999999999999999999999999988877766543 34433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.2e-06  Score=81.44  Aligned_cols=127  Identities=9%  Similarity=-0.052  Sum_probs=98.1

Q ss_pred             HhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         267 EQGKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       267 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ..++...-+|..++..|++++|+..|++++...+..          -.+....++.++|.++..+|++++|+..+.++++
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~----------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG----------WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC----------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345566667899999999999999999999876542          1234567899999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHHH
Q psy4385         347 LEPNN------EKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNN--------KAAVQKLTQTKQKLREQK  403 (473)
Q Consensus       347 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~--------~~~~~~l~~~~~~~~~~~  403 (473)
                      +.+..      ..+++.++.++...+++..|...+.+++.+.+..        ..+...++.+....+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  150 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD  150 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchh
Confidence            75432      4678899999999999999999999998864321        224445556655544333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.29  E-value=1.2e-06  Score=79.27  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=68.0

Q ss_pred             HHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         326 MCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       326 ~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                      .-+++.|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..+...++.+....
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            34578899999999999999999999999999999999999999999999999999999999988887776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=2.3e-06  Score=79.34  Aligned_cols=80  Identities=13%  Similarity=-0.012  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         320 CHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNAY-LDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       320 ~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~-~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      ++...+.+..+.++++.|+..+.++++..|.+...|...+... ...++.+.|...|++++...|++..++..+......
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555433 223555555555555555555555555554444443


Q ss_pred             H
Q psy4385         399 L  399 (473)
Q Consensus       399 ~  399 (473)
                      .
T Consensus       216 ~  216 (308)
T d2onda1         216 L  216 (308)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2.7e-05  Score=71.81  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHH-cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHH
Q psy4385         317 LTACHLNAAMCLLK-LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNK----AAVQK  391 (473)
Q Consensus       317 ~~~~~~nla~~~~k-l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~----~~~~~  391 (473)
                      ....+.+.|..... .++.+.|...+++++...|+++..|...+..+...|+++.|+..|++|+...|.++    .++..
T Consensus       167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~  246 (308)
T d2onda1         167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR  246 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34456666665443 57888888888888888888888888888888888888888888888888777543    35555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4385         392 LTQTKQKLREQKIKEKQVYANMFDKFAKH  420 (473)
Q Consensus       392 l~~~~~~~~~~~~~~k~~~~~~f~~~~~~  420 (473)
                      ........+... ..++.++++...+...
T Consensus       247 ~~~fE~~~G~~~-~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         247 FLAFESNIGDLA-SILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHSCHH-HHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHcCCHH-HHHHHHHHHHHHCccc
Confidence            555544443333 3445666666655544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=1.3e-05  Score=62.45  Aligned_cols=76  Identities=16%  Similarity=0.083  Sum_probs=58.3

Q ss_pred             HHHhhcchhhhc---ccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q psy4385         271 LLKERGTTYFKQ---DKFELACRNYKKAIPYLDFDGGFEGEQETERKKT-LTACHLNAAMCLLKLKQAKPAKDQCDKAIE  346 (473)
Q Consensus       271 ~~~~~G~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~kl~~~~~A~~~~~~al~  346 (473)
                      ...+.|.++.+.   .+..+|+..++.+++               .+|. ...+++++|.+|+++|+|++|..+++++|+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~---------------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYK---------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            444455555433   456788888888873               3333 357999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHH
Q psy4385         347 LEPNNEKAFFRRGNA  361 (473)
Q Consensus       347 ~~p~~~ka~~~~g~a  361 (473)
                      ++|+|..|..-+-.+
T Consensus       102 ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1         102 HERNNKQVGALKSMV  116 (124)
T ss_dssp             HCTTCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHH
Confidence            999999987655444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.65  E-value=0.00022  Score=63.63  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=82.0

Q ss_pred             hHHHHhhcchhhhcccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHH
Q psy4385         269 GKLLKERGTTYFKQDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKDQCDKA  344 (473)
Q Consensus       269 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~a  344 (473)
                      +.++..+|..++.+++|.+|+.+|++|.+.                 .+..++++||.+|..    ..++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-----------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            468889999999999999999999999832                 246789999999998    67999999999998


Q ss_pred             hhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q psy4385         345 IELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPN  384 (473)
Q Consensus       345 l~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~  384 (473)
                      ....  ++.+.+++|.++..    ..+++.|...++++....+.
T Consensus        65 ~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            8664  78888899888765    56889999999999876543

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=8e-05  Score=56.68  Aligned_cols=84  Identities=19%  Similarity=0.374  Sum_probs=66.8

Q ss_pred             CCCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCC
Q psy4385         161 STPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVP  237 (473)
Q Consensus       161 ~~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip  237 (473)
                      .....|+.|+|+|.|..+|..+.+   .+..|.+|.+.   ++++++.+|..|+.|+...|.+.-...|....      .
T Consensus        13 r~a~~GD~v~id~~~~~dG~~~~~~~~~~~~~~lg~~~---~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~------l   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGR---MIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN------L   83 (106)
T ss_dssp             SSCCTTEEEEEEEECCSSSSCCSTTEEEEEEEEETTSC---CCTTHHHHTTSCCTTCCEEEEECCCSSCCCTT------T
T ss_pred             ccccCCCEEEEEEEEEECCEECCCCcccceEEEecCCC---ccchHHHHhcCCCCCceEEEEEEeCCCCCchh------h
Confidence            345578999999999999988864   47899999987   89999999999999999999987444443322      2


Q ss_pred             CCCCceeeeeeccccc
Q psy4385         238 SNKPATYTITMNNFEK  253 (473)
Q Consensus       238 ~~~~~~y~i~L~~~~~  253 (473)
                      .+..+.|.+.+..+.+
T Consensus        84 aGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          84 KGKAAKFAINLKKVEE   99 (106)
T ss_dssp             TTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEecc
Confidence            3467899999987755

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.37  E-value=0.00066  Score=53.72  Aligned_cols=82  Identities=17%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCCHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNNEKAFFR  357 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~  357 (473)
                      ..++++|+..|+++.+.                 .++.+++++|.+|..    ..++.+|+.+++++.+.  .++.+.++
T Consensus        36 ~~~~~~a~~~~~~aa~~-----------------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~   96 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL-----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLI   96 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc-----------------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHH
Confidence            45677778877777632                 346677788887776    45678888888888765  46788888


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhcC
Q psy4385         358 RGNAYLD----LNEPELAEKDFQKVLQID  382 (473)
Q Consensus       358 ~g~a~~~----lg~~~~A~~~~~~al~l~  382 (473)
                      +|.+|..    ..++++|+..|++|.++.
T Consensus        97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          97 LGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            8888776    457888888888887764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00042  Score=61.63  Aligned_cols=75  Identities=25%  Similarity=0.244  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHH----cCChhHHHHHHHHHhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHH
Q psy4385         316 TLTACHLNAAMCLLK----LKQAKPAKDQCDKAIELEPNNEKAFFRRGNAYLD----LNEPELAEKDFQKVLQIDPNNKA  387 (473)
Q Consensus       316 ~~~~~~~nla~~~~k----l~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~P~~~~  387 (473)
                      .+..+++++|.++..    ..+++.|+.+|.++.+.  .++.++|++|.+|..    ..++++|+..|++|..+.+  ..
T Consensus       176 g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~  251 (265)
T d1ouva_         176 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KG  251 (265)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HH
T ss_pred             cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC--HH
Confidence            357788889988887    67889999999998887  478899999998876    4478889999999987753  34


Q ss_pred             HHHHHHH
Q psy4385         388 AVQKLTQ  394 (473)
Q Consensus       388 ~~~~l~~  394 (473)
                      +...|..
T Consensus       252 A~~~l~~  258 (265)
T d1ouva_         252 ACDILKQ  258 (265)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            4444443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.31  E-value=5.5e-05  Score=58.40  Aligned_cols=83  Identities=19%  Similarity=0.315  Sum_probs=64.6

Q ss_pred             CCCCCCeEEEEEEeeeCCeEEEe---ceeeEEeCCCcccCCcHHHHHHHHhcccCcEEEEEecCCCCCCCCCCCCCCCCC
Q psy4385         162 TPKDGANVEITLKGECEGKVFQE---GTFSFVLGEGSEYDIPENLEKALEKFKYKEKSRLFVQPQHLWSGKGNDKLGVPS  238 (473)
Q Consensus       162 ~p~~~~~v~~~~~g~~~g~~~~~---~~~~~~lg~~~~~~~~~gle~al~~m~~gE~~~~~i~~~~~~~~~g~~~~~ip~  238 (473)
                      .+..|+.|+|+|.|..+|..|.+   .++.|.+|.+.   ++++++.+|.+|+.|+...|.+.-...|.....      .
T Consensus        23 ~a~~gD~v~id~~~~~dG~~~~~~~~~~~~~~lg~~~---~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l------a   93 (113)
T d1t11a3          23 AAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGR---MIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL------K   93 (113)
T ss_dssp             CCCTTCEEEEEEEEESSSSCCTTCEEEEEEEETTSCC---BSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT------S
T ss_pred             cccCCCEEEEEEEEEECCEEccCCccceEEEEecccc---ccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc------C
Confidence            56789999999999999988865   36888899887   899999999999999999888864333333222      2


Q ss_pred             CCCceeeeeeccccc
Q psy4385         239 NKPATYTITMNNFEK  253 (473)
Q Consensus       239 ~~~~~y~i~L~~~~~  253 (473)
                      +..+.|.+.+..+..
T Consensus        94 Gk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          94 GKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SCEEEECCCEEEEEE
T ss_pred             CCeEEEEEEEEEEEe
Confidence            356788888876654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.00086  Score=53.00  Aligned_cols=94  Identities=17%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             cccHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy4385         282 QDKFELACRNYKKAIPYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIELEPNNEKAFFRRGNA  361 (473)
Q Consensus       282 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  361 (473)
                      ..++.+|+.+|++|.+.-                 +..++++++.  ....++++|+..+.++.+.  .++.+.+++|..
T Consensus         6 ~kd~~~A~~~~~kaa~~g-----------------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~   64 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN-----------------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT-----------------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC-----------------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHh
Confidence            358999999999998432                 2335556653  3456899999999999876  589999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4385         362 YLD----LNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQK  398 (473)
Q Consensus       362 ~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  398 (473)
                      |..    ..++++|+..|+++.+.  .++.+...|+.++..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            986    56799999999999876  578888888887654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.78  E-value=0.66  Score=33.11  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             hhHHHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385         263 DEKLEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD  300 (473)
Q Consensus       263 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~  300 (473)
                      ...+..|..+...+..+-..|+|.+|+.+|..|+.++-
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34556788888999999999999999999999997654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.71  E-value=1.8  Score=38.78  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             hhcchhhhcccHHHHHHHHHHHh------hhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q psy4385         274 ERGTTYFKQDKFELACRNYKKAI------PYLDFDGGFEGEQETERKKTLTACHLNAAMCLLKLKQAKPAKDQCDKAIEL  347 (473)
Q Consensus       274 ~~G~~~~~~~~~~~A~~~y~~al------~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~kl~~~~~A~~~~~~al~~  347 (473)
                      ..|..+++.|.|+.|...|...-      .++-........-..........+|......++...+..-| ..|...+.+
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la-~i~~~~~~~   97 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA-QMCGLHIVV   97 (336)
T ss_dssp             ----------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH-HHTTTTTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHH-HHHHHHhhc
Confidence            35666667777777776665422      11111000000001111222233444444444444444332 112222222


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4385         348 EPNNEKAFFRRGNAYLDLNEPELAEKDFQKVLQIDPNNKAAVQKLTQTKQKL  399 (473)
Q Consensus       348 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  399 (473)
                         ++.-+--.-..|...|.+++.+..|..++.+++.+...+..|..+..+.
T Consensus        98 ---~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          98 ---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence               2333344566777889999999999999999899998888888887664

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.06  E-value=4.1  Score=27.62  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=19.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHH-------HHHHhcCCCCHHHHHHHH
Q psy4385         356 FRRGNAYLDLNEPELAEKDF-------QKVLQIDPNNKAAVQKLT  393 (473)
Q Consensus       356 ~~~g~a~~~lg~~~~A~~~~-------~~al~l~P~~~~~~~~l~  393 (473)
                      -|++..++..|+|++|+.++       ..|+++ +.+..+..-|.
T Consensus        12 ~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SLq   55 (83)
T d2crba1          12 SRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSLE   55 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            35555555555555555444       444555 56666655443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.50  E-value=0.49  Score=32.38  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             HHhhHHHHhhcchhhhcccHHHHHHHHHHHhhhhc
Q psy4385         266 LEQGKLLKERGTTYFKQDKFELACRNYKKAIPYLD  300 (473)
Q Consensus       266 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~  300 (473)
                      ++.|..+-..+..+.+.|+|++||.++++|..++.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999996554