Psyllid ID: psy4416

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGKPTV
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHcEEEccccccccHHHHHHHHHHHHHHccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHccHHHHHHHHcccccccEEEEEccccEcccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccc
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILnplklnknlhneiVNNKSTLFLTLINnwkkpnhlVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSaiknnplfeefnkltlgfsfnkltsnsktQDTLILNTlktskaepngihkyyaDDIVGILNIIEEnlkwsnyktELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERlqekcplpdpeVAIVIGRKlssygllpwnirlteffqfdnyydisASKFKNILRKYSKceqrygkptv
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNtlktskaepngiHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERlqekcplpdpEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKyskceqrygkptv
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYIlnplklnknlhnEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGKPTV
*FIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKC*********
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIV**************KKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSK*************IVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIV**********DTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGKP**
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKC*********
MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNT*******************VGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYG****
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFIHRYFYKFLSLLAFCYYFLTSNIWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGKPTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
Q6DHR8274 Nogo-B receptor OS=Danio yes N/A 0.875 0.927 0.246 6e-19
Q96E22293 Nogo-B receptor OS=Homo s yes N/A 0.675 0.668 0.289 4e-15
Q99LJ8297 Nogo-B receptor OS=Mus mu yes N/A 0.658 0.643 0.274 9e-15
Q12063375 Probable undecaprenyl pyr yes N/A 0.665 0.514 0.292 4e-08
>sp|Q6DHR8|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1 Back     alignment and function desciption
 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 46/300 (15%)

Query: 2   FIHRYFYKFLSLLAFCYYFLTSNIWT---SLIYILNPLKLNKNLHNEIVNNKSTLFLTLI 58
            + R+ +  L L      +   +IW    +++ +L PL L    HN+          +  
Sbjct: 7   MVWRFLHALLYLQRAIVAWFRVHIWRWKLAVVDLLLPLALG--FHNQKKTGPKGTRTSRR 64

Query: 59  NNW--------KKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRLSHYNL 110
             W        K P H+ L++ E+ I Y DI  +++WCM  G+S+VSVYD +      N 
Sbjct: 65  VRWGADGRTLEKLPLHVGLLVTEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKRNN- 123

Query: 111 LSAIKNNPLFEEFNKLTLG---FSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADD 167
            S +    L ++   L +G   +S   L + +  Q+  +L+     K           DD
Sbjct: 124 -SRLMEEILKQQQELLGMGSSKYSVEILKNGTNKQEHQVLSCQSMVKV-------LSPDD 175

Query: 168 IVGILNIIEENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKC 227
             G L+I+                   Q    L  ++ +  +T+  ++ +++   L+E  
Sbjct: 176 --GRLSIV-------------------QAAQQLCRAVEQKEKTSKDINVSVLDSLLKESK 214

Query: 228 PLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
            +PDP++ +  G   S+ G LPW+IRLTE     ++ D S     + L++++ CEQR GK
Sbjct: 215 NIPDPDLVLKFGTVQSTLGFLPWHIRLTEIISMPSHIDASYDDLYDALQRFAGCEQRLGK 274
Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator.
Danio rerio (taxid: 7955)
>sp|Q96E22|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1 Back     alignment and function description
>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1 Back     alignment and function description
>sp|Q12063|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
242024649258 conserved hypothetical protein [Pediculu 0.644 0.724 0.331 5e-23
156537017277 PREDICTED: nogo-B receptor-like [Nasonia 0.737 0.772 0.286 4e-19
156386671251 predicted protein [Nematostella vectensi 0.662 0.764 0.289 1e-18
350534606251 uncharacterized protein LOC100574241 [Ac 0.675 0.780 0.271 6e-18
380025580222 PREDICTED: nogo-B receptor-like [Apis fl 0.641 0.837 0.311 9e-18
157167417275 hypothetical protein AaeL_AAEL009647 [Ae 0.741 0.781 0.302 1e-17
50539772274 nogo-B receptor precursor [Danio rerio] 0.875 0.927 0.246 4e-17
213512010281 Nogo-B receptor [Salmo salar] gi|2091474 0.675 0.697 0.282 1e-16
328790733222 PREDICTED: nogo-B receptor-like [Apis me 0.648 0.846 0.293 2e-16
383859774251 PREDICTED: nogo-B receptor-like [Megachi 0.841 0.972 0.282 5e-16
>gi|242024649|ref|XP_002432739.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518224|gb|EEB20001.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 45/232 (19%)

Query: 62  KKPNHLVLIIGEDVILYNDITQIILWCMIAGVSFVSVYDYKNRL-----SHYN-LLSAIK 115
           K P HLV+I+GED I + D + I++WC+ A +SF+S YDY  RL     ++YN L+   K
Sbjct: 66  KCPTHLVIIVGEDGIAFKDFSNIVIWCLAAKISFLSFYDYTGRLKNEQNNYYNYLIDKSK 125

Query: 116 NNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNII 175
            NP     N L+L      L +  K    + LN L       +G  K+     V +   I
Sbjct: 126 INP-----NYLSLASGKQNLKNGQKINCKIYLNFLSIE----DGKRKF-----VELTKEI 171

Query: 176 EENLKWSNYKTELNILSRKQCESDLLNSIVELGETNLSVSDTIMKERLQEKCPLPDPEVA 235
            +N+  +N                              +++  +   L + C LPDPE+ 
Sbjct: 172 SKNVACNNISIS-------------------------DINEQYINNELFKLCGLPDPELV 206

Query: 236 IVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
           ++ G   SS+GLLPW+IR+TEF Q  +  DI  + F +IL KYS C QR+GK
Sbjct: 207 VISGTIYSSFGLLPWHIRVTEFLQTISLKDIQITDFVDILEKYSSCNQRFGK 258

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156537017|ref|XP_001608303.1| PREDICTED: nogo-B receptor-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|156386671|ref|XP_001634035.1| predicted protein [Nematostella vectensis] gi|156221113|gb|EDO41972.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|350534606|ref|NP_001232959.1| uncharacterized protein LOC100574241 [Acyrthosiphon pisum] gi|239790664|dbj|BAH71880.1| ACYPI27127 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380025580|ref|XP_003696548.1| PREDICTED: nogo-B receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|157167417|ref|XP_001653915.1| hypothetical protein AaeL_AAEL009647 [Aedes aegypti] gi|108874239|gb|EAT38464.1| AAEL009647-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|50539772|ref|NP_001002356.1| nogo-B receptor precursor [Danio rerio] gi|82183326|sp|Q6DHR8.1|NGBR_DANRE RecName: Full=Nogo-B receptor; Short=NgBR; AltName: Full=Nuclear undecaprenyl pyrophosphate synthase 1 homolog; Flags: Precursor gi|49900370|gb|AAH75899.1| Zgc:92136 [Danio rerio] Back     alignment and taxonomy information
>gi|213512010|ref|NP_001133241.1| Nogo-B receptor [Salmo salar] gi|209147404|gb|ACI32888.1| Nogo-B receptor precursor [Salmo salar] Back     alignment and taxonomy information
>gi|328790733|ref|XP_001120453.2| PREDICTED: nogo-B receptor-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383859774|ref|XP_003705367.1| PREDICTED: nogo-B receptor-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
UNIPROTKB|F1N8Y0218 NUS1 "Uncharacterized protein" 0.362 0.481 0.285 1.2e-18
ZFIN|ZDB-GENE-040718-48274 nus1 "nuclear undecaprenyl pyr 0.334 0.354 0.309 4.5e-18
UNIPROTKB|E2RT93293 NUS1 "Uncharacterized protein" 0.362 0.358 0.315 7.9e-17
UNIPROTKB|I3LLX5296 NUS1 "Uncharacterized protein" 0.262 0.256 0.387 4.8e-16
RGD|1307879293 Nus1 "nuclear undecaprenyl pyr 0.2 0.197 0.431 3.1e-14
MGI|MGI:1196365297 Nus1 "nuclear undecaprenyl pyr 0.2 0.195 0.448 3.9e-14
FB|FBgn0031312278 Tango14 "Transport and Golgi o 0.7 0.730 0.296 1.4e-11
DICTYBASE|DDB_G0271830354 DDB_G0271830 "Nogo-B receptor" 0.789 0.646 0.235 4e-11
SGD|S000002352375 NUS1 "Putative prenyltransfera 0.665 0.514 0.292 4e-09
UNIPROTKB|E1BA08157 E1BA08 "Uncharacterized protei 0.2 0.369 0.448 4.7e-09
UNIPROTKB|F1N8Y0 NUS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 147 (56.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 32/112 (28%), Positives = 58/112 (51%)

Query:   183 NYKTELNILSRKQCESDLLNS-------IVELGETNLSVSDTIMKERLQEKCPLPDPEVA 235
             N ++ L +LS +  ++D++ +       + +   T   +   ++   L      PDP++ 
Sbjct:   107 NCQSTLKVLSPEDGKADIVKAAQNFCQLVAQQQRTYTDLDVNVLDNLLSSTSGFPDPDLV 166

Query:   236 IVIGRKLSSYGLLPWNIRLTEFFQFDNYYDISASKFKNILRKYSKCEQRYGK 287
             +  G   S+ G LPW+IRLTE     ++ +IS   F + L +Y+ CEQR+GK
Sbjct:   167 LKFGPVDSTLGFLPWHIRLTEIISLPSHQNISYEDFFSALHRYAACEQRWGK 218
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
GO:0032367 "intracellular cholesterol transport" evidence=IEA
GO:0055092 "sterol homeostasis" evidence=IEA
ZFIN|ZDB-GENE-040718-48 nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RT93 NUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLX5 NUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307879 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1196365 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0031312 Tango14 "Transport and Golgi organization 14" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271830 DDB_G0271830 "Nogo-B receptor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002352 NUS1 "Putative prenyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E1BA08 E1BA08 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DHR8NGBR_DANRENo assigned EC number0.24660.87580.9270yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
COG0020245 COG0020, UppS, Undecaprenyl pyrophosphate synthase 2e-04
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information 
 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 199 DLLNSIVELGETNLSVSDTIMKERLQEKCPLPD-PEVAIVI---GRKLSSYGLLPWNIRL 254
           D +  I E         + I +E +         P+  ++I   G +  S   L W    
Sbjct: 152 DAVRKIAEDVAAGKLSPEDIDEELISSHLYTSGLPDPDLLIRTSGEQRLS-NFLLWQSAY 210

Query: 255 TEFFQFDNYY-DISASKFKNILRKYSKCEQRYGK 287
           +E +  D  + D         +R Y K E+R+G+
Sbjct: 211 SELYFTDVLWPDFRREDLLRAIRDYQKRERRFGR 244

Length = 245

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
PRK14837230 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14831249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14836253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14834249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14827296 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14829243 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14830251 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14832253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14841233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14840250 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14833233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14842241 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14838242 undecaprenyl pyrophosphate synthase; Provisional 100.0
TIGR00055226 uppS undecaprenyl diphosphate synthase. Alternate 100.0
PRK14828256 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14835275 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14839239 undecaprenyl pyrophosphate synthase; Provisional 100.0
COG0020245 UppS Undecaprenyl pyrophosphate synthase [Lipid me 100.0
cd00475221 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases ( 100.0
PRK10240229 undecaprenyl pyrophosphate synthase; Provisional 100.0
PTZ00349322 dehydrodolichyl diphosphate synthetase; Provisiona 100.0
PF01255223 Prenyltransf: Putative undecaprenyl diphosphate sy 100.0
KOG1602|consensus271 100.0
KOG2818|consensus263 100.0
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-53  Score=377.61  Aligned_cols=207  Identities=13%  Similarity=0.241  Sum_probs=169.2

Q ss_pred             CCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHH
Q psy4416          60 NWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEE  122 (290)
Q Consensus        60 ~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~  122 (290)
                      .+++|+|||||||||               ..|++++.+++.||.++||++||+|+|| +||||+. +++.|+  +++.+
T Consensus         3 ~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm--~L~~~   80 (230)
T PRK14837          3 KNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM--FLIAD   80 (230)
T ss_pred             CCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH--HHHHH
Confidence            368999999999999               3799999999999999999999999999 7999998 666666  55543


Q ss_pred             hhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHH
Q psy4416         123 FNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLN  202 (290)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~  202 (290)
                      .  +..  .   ......+..++.+.|+..          ++|++....++..++.| +++++++||+|.+||||+||++
T Consensus        81 ~--l~~--~---~~~~~~~~irvr~iGd~~----------~Lp~~l~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~  142 (230)
T PRK14837         81 Y--LSS--E---FNFYKKNNIKIIVSGDIE----------SLSEEVKKSIKDAISFT-KNFDGLVLNLAINYGGRNEIVR  142 (230)
T ss_pred             H--HHH--H---HHHHHHCCcEEEEEcChh----------hCCHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCHHHHHH
Confidence            2  210  0   111122344555556542          34555556666776665 7899999999999999999999


Q ss_pred             HHHHHHhccCCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHHHHH
Q psy4416         203 SIVELGETNLSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNILRKY  278 (290)
Q Consensus       203 a~r~l~~~~~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL~~Y  278 (290)
                      |++++++..++++++   .+++.|+.. +.|||||+||||||.|||||||||++||||||++.+ |||+..+|.+||.+|
T Consensus       143 A~~~~~~~~~~~~~i~e~~~~~~L~~~-~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y  221 (230)
T PRK14837        143 AVKKFLSSGLDLETLNENVFSKFLDNP-ELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECF  221 (230)
T ss_pred             HHHHHHhcCCChhhCCHHHHHHhhccC-CCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHH
Confidence            999999775555443   677888864 899999999999999999999999999999999997 999999999999999


Q ss_pred             hhhhhccCC
Q psy4416         279 SKCEQRYGK  287 (290)
Q Consensus       279 s~~~~R~Gk  287 (290)
                      ++|+||||+
T Consensus       222 ~~R~RrfG~  230 (230)
T PRK14837        222 KNRKRNFGR  230 (230)
T ss_pred             hcccCcCCC
Confidence            999999996

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>TIGR00055 uppS undecaprenyl diphosphate synthase Back     alignment and domain information
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2 Back     alignment and domain information
>KOG1602|consensus Back     alignment and domain information
>KOG2818|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 55/208 (26%)

Query: 25  IWTSLIYILNPLKLNKNLHNEIVNNKSTLFLTLINNWKKPN----HLVLI-----IGEDV 75
           IW  +I     + +NK LH       S     L+    K +      + +     +  + 
Sbjct: 395 IWFDVIKSDVMVVVNK-LHK-----YS-----LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 76  IL-------YNDITQIILWCMIAGVSFVSVYDYKNRLSHYNLLSAIKNNPLFEEFNKLTL 128
            L       YN         +I        Y +   + H+  L  I++      F  + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHH--LKNIEHPERMTLFRMVFL 498

Query: 129 GFSF--NKL--TSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNY 184
            F F   K+   S +      ILNTL+          K+Y   I       E  +     
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQL--------KFYKPYICDNDPKYERLV----- 545

Query: 185 KTELNILSRKQCESDLLNS----IVELG 208
              L+ L   + E +L+ S    ++ + 
Sbjct: 546 NAILDFL--PKIEENLICSKYTDLLRIA 571

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 100.0
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 100.0
3sgv_B253 Undecaprenyl pyrophosphate synthase; alpha/beta, t 100.0
4h8e_A256 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 100.0
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 100.0
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 100.0
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-57  Score=405.64  Aligned_cols=220  Identities=16%  Similarity=0.248  Sum_probs=155.2

Q ss_pred             ccchhhhHhhhcCCCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-h
Q psy4416          48 NNKSTLFLTLINNWKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-L  110 (290)
Q Consensus        48 ~~~~~~~~~v~~~~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-l  110 (290)
                      +.|+.|++||.+.+++|+|||||||||               ..|++++.+++.||.++||++||+|+|| +||||+. +
T Consensus         5 ~~~~~I~~d~~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~E   84 (249)
T 1f75_A            5 KKRKAIKNNNINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDE   84 (249)
T ss_dssp             ---------CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-----------
T ss_pred             CchhHhhhcccccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHH
Confidence            456779999999999999999999998               2689999999999999999999999999 7999997 5


Q ss_pred             HhhhccchhhHHhhhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEE
Q psy4416         111 LSAIKNNPLFEEFNKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNI  190 (290)
Q Consensus       111 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnl  190 (290)
                      ++.|+  +++.+.  +..     .+++...+..++.+.|+..          .+|.+....+...++.| ++|++++||+
T Consensus        85 V~~Lm--~l~~~~--l~~-----~~~~l~~~~vr~~~iG~~~----------~lp~~~~~~i~~~~~~T-~~n~~l~lni  144 (249)
T 1f75_A           85 VNYLM--KLPGDF--LNT-----FLPELIEKNVKVETIGFID----------DLPDHTKKAVLEAKEKT-KHNTGLTLVF  144 (249)
T ss_dssp             -CGGG--THHHHH--HHH-----HHHHHHHTTCEEEEESCGG----------GSCHHHHHHHHHHHHTT-TTCCSCEEEE
T ss_pred             HHHHH--HHHHHH--HHH-----HHHHHHHcCeEEEEeCChh----------hCCHHHHHHHHHHHHhh-cCCCceEEEE
Confidence            55555  444322  210     0111112334555556432          23444445555555554 7899999999


Q ss_pred             EeCCCcHHHHHHHHHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC
Q psy4416         191 LSRKQCESDLLNSIVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY  263 (290)
Q Consensus       191 ls~ydGr~eIv~a~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~  263 (290)
                      |++||||+||++|+|+++++.    ++++|+   .++++|+.. +.|||||+|||||+.|||||||||++||||||++.+
T Consensus       145 a~~YggR~eIv~A~r~l~~~v~~g~l~~~~I~e~~i~~~L~t~-~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~l  223 (249)
T 1f75_A          145 ALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTA-NMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEF  223 (249)
T ss_dssp             ECSCCHHHHHHHHHHHHHHHHHTTSSCGGGCSHHHHGGGSTTT-TSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSC
T ss_pred             EecCCCHHHHHHHHHHHHHHHHcCCCChHhCCHHHHHHhhccC-CCCCCcEEEEcCCCccccCCchhhhhceEEEECCCC
Confidence            999999999999999998762    555554   677888864 899999999999999999999999999999999997


Q ss_pred             -CCCCHHHHHHHHHHHhhhhhccCCC
Q psy4416         264 -YDISASKFKNILRKYSKCEQRYGKP  288 (290)
Q Consensus       264 -p~~~~~~f~~aL~~Ys~~~~R~Gk~  288 (290)
                       |||++.+|.+||.+||+|+||||+.
T Consensus       224 WPdF~~~~~~~Al~~y~~r~RRfG~~  249 (249)
T 1f75_A          224 WPDFNEESLAQCISIYQNRHRRFGGL  249 (249)
T ss_dssp             GGGCCHHHHHHHHHHHTTC-------
T ss_pred             CCcCCHHHHHHHHHHHhcCccCCCCC
Confidence             9999999999999999999999973
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Back     alignment and structure
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ... Back     alignment and structure
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp} Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Back     alignment and structure
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1ueha_228 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 6e-04
d1f75a_229 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 0.002
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 172 LNIIEENLKWSNYKTELNILSRKQCESDLLNSI------VELGETNLSVSDTIMKERLQE 225
                E L   N    LNI +      D++  +      V+ G       D  M  +   
Sbjct: 111 RIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVC 170

Query: 226 KCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNYY-DISASKFKNILRKYSK 280
              L   ++ I  G +      L W I   E +  D  + D     F+  L  ++ 
Sbjct: 171 MHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN 226
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1ueha_228 Undecaprenyl diphosphate synthase {Escherichia col 100.0
d1f75a_229 Undecaprenyl diphosphate synthase {Micrococcus lut 100.0
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-50  Score=354.70  Aligned_cols=201  Identities=16%  Similarity=0.229  Sum_probs=152.0

Q ss_pred             CCCCcEEEEEEeCC---------------cccHHHHHHHHHHHHHhCCCEEEEEecC-CCCCchh-hHhhhccchhhHHh
Q psy4416          61 WKKPNHLVLIIGED---------------VILYNDITQIILWCMIAGVSFVSVYDYK-NRLSHYN-LLSAIKNNPLFEEF  123 (290)
Q Consensus        61 ~kiP~HlAvImdgn---------------~~g~~~l~~ll~Wc~~~GI~~lSlYd~s-g~lkr~~-ll~~l~~~~~~~~~  123 (290)
                      ...|+|||||||||               ..|++++.+++.||.++||++||+|+|| +||+|+. +++.++  +++.+.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm--~l~~~~   80 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM--ELFVWA   80 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------C--HHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHH--HHHHHH
Confidence            35799999999998               2799999999999999999999999999 7999998 556666  555432


Q ss_pred             hhhccccccccccccCCCCceEEEecCCCCCCCcccccccccchhhhHHHHHHHhhhcCCCceEEEEEeCCCcHHHHHHH
Q psy4416         124 NKLTLGFSFNKLTSNSKTQDTLILNTLKTSKAEPNGIHKYYADDIVGILNIIEENLKWSNYKTELNILSRKQCESDLLNS  203 (290)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~~~~~~~~l~vnlls~ydGr~eIv~a  203 (290)
                        +..  ....+   ..+..++.+.|+..          .+|++....++..++.| +++++++||+|++||||+||++|
T Consensus        81 --l~~--~~~~~---~~~~i~i~~iG~~~----------~lp~~~~~~i~~~e~~T-~~n~~~~Lnia~~Yggr~EI~~A  142 (228)
T d1ueha_          81 --LDS--EVKSL---HRHNVRLRIIGDTS----------RFNSRLQERIRKSEALT-AGNTGLTLNIAANYGGRWDIVQG  142 (228)
T ss_dssp             --HHH--THHHH---HHTTCEEEEESCCT----------TSCHHHHHHHHHHHHHH-TTCCSCEEEEEESCCHHHHHHHH
T ss_pred             --HHH--hHHHH---HhccEEEEEECCcc----------hhhhhhhhhhhhHHHhc-cCCCCceEEEEeccccchHHHHH
Confidence              210  00111   12344566666542          23344446666666665 68999999999999999999999


Q ss_pred             HHHHHhcc----CCcchH---HHHHHhhhcCCCCCCcEEEEeCCCcccCCCcchhhcceeEEEcCCC-CCCCHHHHHHHH
Q psy4416         204 IVELGETN----LSVSDT---IMKERLQEKCPLPDPEVAIVIGRKLSSYGLLPWNIRLTEFFQFDNY-YDISASKFKNIL  275 (290)
Q Consensus       204 ~r~l~~~~----~~~~di---~i~~~L~~~~~~pePDLlIrtgg~~rLsgFlpWqir~TEi~~~~~~-p~~~~~~f~~aL  275 (290)
                      ++++++..    ++++++   .+++.|+.. +.|||||+|||||+.|||||||||++||||||++.+ |||++.||.+||
T Consensus       143 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~-~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~dl~~al  221 (228)
T d1ueha_         143 VRQLAEKVQQGNLQPDQIDEEMLNQHVCMH-ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGAL  221 (228)
T ss_dssp             HHHHHHHHHTTSCCGGGCCHHHHHTTSTTT-TSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHhHhhhhheecccccC-CCCCCcEEEecCCceeccccchhcccceeEEECCCCCCcCCHHHHHHHH
Confidence            99998763    455554   677888764 899999999999999999999999999999999997 999999999999


Q ss_pred             HHHhhhh
Q psy4416         276 RKYSKCE  282 (290)
Q Consensus       276 ~~Ys~~~  282 (290)
                      .+|++|+
T Consensus       222 ~~y~~R~  228 (228)
T d1ueha_         222 NAFANRE  228 (228)
T ss_dssp             HHHHTCC
T ss_pred             HHHHccC
Confidence            9999885
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Back     information, alignment and structure