Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 66
cd01926 164
cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik
9e-38 PTZ00060 183
PTZ00060, PTZ00060, cyclophilin; Provisional
1e-29 cd01927 148
cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo
2e-24 cd00317 146
cd00317, cyclophilin, cyclophilin: cyclophilin-typ
3e-24 pfam00160 144
pfam00160, Pro_isomerase, Cyclophilin type peptidy
7e-24 COG0652 158
COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase
4e-22 PLN03149 186
PLN03149, PLN03149, peptidyl-prolyl isomerase H (c
6e-20 cd01923 159
cd01923, cyclophilin_RING, cyclophilin_RING: cyclo
5e-17 cd01922 146
cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY
7e-17 cd01928 153
cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3
2e-15 cd01921 166
cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph
2e-13 cd01925 171
cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC
7e-12 PTZ00221 249
PTZ00221, PTZ00221, cyclophilin; Provisional
6e-09 cd01924 176
cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40
2e-04 cd01920 155
cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP
4e-04 PRK10903 190
PRK10903, PRK10903, peptidyl-prolyl cis-trans isom
0.002
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
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Score = 122 bits (308), Expect = 9e-38
Identities = 47/63 (74%), Positives = 56/63 (88%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTVKT WLD +HVVFG VVEG+DVVKK+E++GS +GK KK+V+A
Sbjct: 102 MANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIA 161
Query: 61 NSG 63
+ G
Sbjct: 162 DCG 164
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional
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Score = 102 bits (256), Expect = 1e-29
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV WLD +HVVFG V+EG++VV+ +E G+QSG K +VV
Sbjct: 118 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVT 177
Query: 61 NSGQLS 66
+ G+L
Sbjct: 178 DCGELQ 183
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
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Score = 87.9 bits (218), Expect = 2e-24
Identities = 35/57 (61%), Positives = 45/57 (78%), Gaps = 2/57 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI 57
MANAGPNTNGSQFFITTV T WLDN+H VFG VV+G+DVV+++E+ ++ K +
Sbjct: 86 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIEN--VKTDKNDRPY 140
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
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Score = 87.3 bits (217), Expect = 3e-24
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
MANAGPNTNGSQFFITT T LD +H VFG VVEG+DVV K+E ++G+ K + +
Sbjct: 85 MANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTI 144
Query: 60 AN 61
++
Sbjct: 145 SD 146
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
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Score = 86.6 bits (215), Expect = 7e-24
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MA +GPN+ GSQFFIT LD + VFG VVEG+DVV+K+E + + + K + +
Sbjct: 83 MARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDVKIT 142
Query: 61 N 61
+
Sbjct: 143 S 143
The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
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Score = 82.7 bits (205), Expect = 4e-22
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 1 MANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 45
MA AG PN+NGSQFFIT V +LD ++ VFG VVEG+DVV K+++
Sbjct: 87 MARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKN 132
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional
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Score = 77.6 bits (191), Expect = 6e-20
Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIV 58
MAN+GPNTNG QFFIT K WLDN+HVVFG V+ +GL VV+K+E++ + + + V
Sbjct: 120 MANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACV 179
Query: 59 VANSGQL 65
++ G++
Sbjct: 180 ISECGEM 186
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
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Score = 69.4 bits (170), Expect = 5e-17
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVV 59
MAN+GPNTNGSQFFIT LD +H VFG VV GL+ ++ +E++ + + ++I +
Sbjct: 88 MANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKI 147
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
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Score = 68.7 bits (168), Expect = 7e-17
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGK 52
MANAGPNTNGSQFFIT T WLD +H +FG V +G+ V++ + + +Q+ +
Sbjct: 86 MANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDR 137
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like
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Score = 65.2 bits (159), Expect = 2e-15
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 58
MAN GPNTNGSQFFIT K LD ++ VFG V++G + + LE + K + +
Sbjct: 89 MANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKL--PVDKKYRPLE 144
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
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Score = 60.0 bits (146), Expect = 2e-13
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 1 MANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKL 43
M NAG N NGSQF+IT + +LD +H VFG VVEG DV++K+
Sbjct: 93 MVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKI 136
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
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Score = 56.2 bits (136), Expect = 7e-12
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 34
MANAG ++NGSQFF T K L+N+H +FG V
Sbjct: 94 MANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional
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Score = 49.5 bits (118), Expect = 6e-09
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
M + GP+T+GS F IT + LD + VVFG V+ L +++KLES+ G+ + V
Sbjct: 154 MISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTV 213
Query: 60 ANSGQLS 66
+ G L+
Sbjct: 214 SFCGALT 220
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40
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Score = 36.3 bits (84), Expect = 2e-04
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 6 PNTNGSQFFI-------TTVKTAWLDNRHVVFGSVVEGLDVVKKLE 44
PN+ SQFF T + LD R+ VFG V +GLD++++L+
Sbjct: 118 PNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
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Score = 35.5 bits (82), Expect = 4e-04
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 1 MA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLES 45
MA P++ SQFFI A LD + + VFG V EG+DVV K+
Sbjct: 83 MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAG 133
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
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Score = 34.0 bits (78), Expect = 0.002
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 11 SQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKL-----ESMGSQSGKTSKKIVV 59
SQFFI A+LD+ + VFG VV+G+DV K+ +G SK +V+
Sbjct: 125 SQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG0880|consensus
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Probab=99.96 E-value=6.4e-30 Score=159.82 Aligned_cols=66 Identities=62% Similarity=1.060 Sum_probs=64.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||.|||+||||||||+.+.+|||++|+|||||++|||++.+|+.+++ ..++|.++++|.+||+|+
T Consensus 137 MAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 137 MANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred eeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 999999999999999999999999999999999999999999999999 789999999999999874
>KOG0546|consensus
Back Show alignment and domain information
Probab=99.96 E-value=6.3e-30 Score=170.44 Aligned_cols=66 Identities=52% Similarity=0.889 Sum_probs=63.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||.||||||||||||+.++|+|||+|+|||+||+|++|++.||.+.+ ..++|..+|+|.+||+|.
T Consensus 113 MAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 113 MANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV 179 (372)
T ss_pred hhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence 999999999999999999999999999999999999999999999999 455899999999999974
>PTZ00221 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=3.6e-28 Score=156.71 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=63.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++||||||+.++++||++|+|||||++||++|++|+++++ ..++|.++|+|.+||+++
T Consensus 154 Man~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 154 MISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220 (249)
T ss_pred eCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence 899999999999999999999999999999999999999999999987 688999999999999974
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Back Show alignment and domain information
Probab=99.94 E-value=2.4e-27 Score=147.46 Aligned_cols=65 Identities=51% Similarity=0.931 Sum_probs=62.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||+++++|+||++|+|||||+ +||++|++|+++++ .+++|.++|+|.+||++
T Consensus 120 ma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 120 MANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred EeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 8899999999999999999999999999999999 79999999999999 78899999999999986
>PTZ00060 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=4.2e-27 Score=146.02 Aligned_cols=66 Identities=62% Similarity=1.051 Sum_probs=63.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
||+++|++++|||||+++++++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||++.
T Consensus 118 ma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 118 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGELQ 183 (183)
T ss_pred eccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEcC
Confidence 789999999999999999999999999999999999999999999999888999999999999973
>KOG0879|consensus
Back Show alignment and domain information
Probab=99.94 E-value=2.7e-27 Score=141.83 Aligned_cols=65 Identities=43% Similarity=0.804 Sum_probs=63.6
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||+|+++||+|||||..++.|||++|+|||+|++|+.++++||.+++ .+++|..+|.|+.||++
T Consensus 112 MANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 112 MANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred ccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 899999999999999999999999999999999999999999999999 89999999999999985
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
Back Show alignment and domain information
Probab=99.94 E-value=5.2e-27 Score=143.22 Aligned_cols=63 Identities=75% Similarity=1.195 Sum_probs=61.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg 63 (66)
||+.+|++++|||||++++.++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||
T Consensus 102 ma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 102 MANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred eeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 889999999999999999999999999999999999999999999999888999999999998
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
Back Show alignment and domain information
Probab=99.93 E-value=2.8e-26 Score=140.29 Aligned_cols=66 Identities=44% Similarity=0.704 Sum_probs=62.1
Q ss_pred CcccCCCCCCceEEEEcCC-CCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||++++++++|||||++.+ .++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+|+++.
T Consensus 93 ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 93 MVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred EeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 8999999999999999975 89999999999999999999999999988 678999999999999874
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
Back Show alignment and domain information
Probab=99.93 E-value=3e-26 Score=139.46 Aligned_cols=65 Identities=42% Similarity=0.731 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
||+++|++++|||||+++++++||++|+|||||++|||+|++|+++++ .+++|..+|+|.+|+++
T Consensus 88 ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 88 MANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 789999999999999999999999999999999999999999999988 67899999999999986
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
>KOG0881|consensus
Back Show alignment and domain information
Probab=99.93 E-value=1.4e-26 Score=137.40 Aligned_cols=64 Identities=44% Similarity=0.814 Sum_probs=61.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|||+|||+|||||||||.+.+|||+||++||||..||+|+.++..+.+ .++||..+++|.+.-.
T Consensus 98 MANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 98 MANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred hhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 899999999999999999999999999999999999999999999999 7899999999998643
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like
Back Show alignment and domain information
Probab=99.93 E-value=1.4e-25 Score=135.82 Aligned_cols=63 Identities=41% Similarity=0.690 Sum_probs=60.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
||+++|++++|||||++++.++||++|+|||||++|||+|++|+++++ .+++|..+|+|.+|-
T Consensus 89 ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 89 MANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred EeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 788999999999999999999999999999999999999999999998 678999999999983
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
Back Show alignment and domain information
Probab=99.93 E-value=1.4e-25 Score=135.12 Aligned_cols=61 Identities=59% Similarity=1.013 Sum_probs=58.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~ 61 (66)
||+++|++++|||||++++.|+||++|+|||||++|||+|++|+++++ .+++|.++|+|.+
T Consensus 86 ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 86 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred EeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 789999999999999999999999999999999999999999999998 6789999999975
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
Back Show alignment and domain information
Probab=99.92 E-value=2.1e-25 Score=134.27 Aligned_cols=61 Identities=44% Similarity=0.847 Sum_probs=58.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~ 61 (66)
||+++|++++|||||+++++|+||++|+|||||++|||+|++|+++++.+++|.++|+|.+
T Consensus 86 ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 86 MANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred EeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 7889999999999999999999999999999999999999999999998889999999974
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
>KOG0111|consensus
Back Show alignment and domain information
Probab=99.92 E-value=4e-25 Score=141.14 Aligned_cols=66 Identities=58% Similarity=0.997 Sum_probs=64.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||+|+|+|||||||+..+.+|||++|+|||.|++||+|+++++..++..++|.+.|+|.+||+++
T Consensus 233 mansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 233 MANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEIE 298 (298)
T ss_pred ccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEeccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999974
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.91 E-value=1.7e-24 Score=132.08 Aligned_cols=65 Identities=43% Similarity=0.720 Sum_probs=57.7
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeec
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~ 65 (66)
|||++ |++|+|||||++.+.+|||++|+|||+|++|||+|++|++..+. .+.|..+++|.+..++
T Consensus 87 MA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 87 MARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred EcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 99999 99999999999999999999999999999999999999997773 2456678888876654
>KOG0882|consensus
Back Show alignment and domain information
Probab=99.91 E-value=1.1e-24 Score=149.03 Aligned_cols=63 Identities=52% Similarity=0.907 Sum_probs=60.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
|||+|||+||||||||..+.||||++|||||||+.||||+++|+.+.+ ..+||++++.|.+--
T Consensus 493 manag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 493 MANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred ecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 999999999999999999999999999999999999999999999999 789999999998753
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Back Show alignment and domain information
Probab=99.91 E-value=4.3e-24 Score=133.30 Aligned_cols=66 Identities=35% Similarity=0.583 Sum_probs=60.2
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCC-----CceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeecC
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~~ 66 (66)
|||.+ |++++|||||++++.++||+ +|+|||+|++|||||++|++++++ .++|..+|+|.+|++++
T Consensus 114 ma~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 114 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred eCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 78865 99999999999999999984 899999999999999999999884 46999999999999864
>KOG0884|consensus
Back Show alignment and domain information
Probab=99.91 E-value=1.9e-24 Score=127.87 Aligned_cols=62 Identities=42% Similarity=0.684 Sum_probs=58.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC--CCCCeecceEEeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVVANS 62 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~--~~~~P~~~v~I~~c 62 (66)
|||+||++|+||||||.+++|+||-+|++||+|++|+|+|+.|+++++ ..+||+.++.|.+.
T Consensus 89 manngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred cccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 899999999999999999999999999999999999999999999999 45899988888764
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Back Show alignment and domain information
Probab=99.89 E-value=2.7e-23 Score=127.18 Aligned_cols=65 Identities=29% Similarity=0.549 Sum_probs=58.1
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCC-------C-CceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeec
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~ 65 (66)
|||.+ |++++|||||++.+.++|| + +|+|||||++|||+|++|+++++. +++|..+|+|.+|.+.
T Consensus 85 ma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred ECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEEe
Confidence 78875 9999999999999988776 3 799999999999999999999983 3699999999999764
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms
Back Show alignment and domain information
Probab=99.89 E-value=2.3e-23 Score=125.00 Aligned_cols=63 Identities=41% Similarity=0.765 Sum_probs=58.7
Q ss_pred CcccC--CCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeee
Q psy442 1 MANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~--~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~ 64 (66)
|++.+ +++++|||||+|.+.++||++|+|||+|++||++|++|++.++.+ +|.++|+|.+||+
T Consensus 91 ~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 91 MARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp EEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred ecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 56654 888999999999999999999999999999999999999998866 9999999999996
It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
Back Show alignment and domain information
Probab=99.89 E-value=1e-22 Score=125.20 Aligned_cols=66 Identities=33% Similarity=0.497 Sum_probs=61.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||++++++++|||||++++.++||++|+|||||+ ++++++++|+++++ .+++|.++|+|.+|+++.
T Consensus 94 ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 94 MANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred ECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 8999999999999999999999999999999999 46888999999998 678999999999998863
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
>KOG0883|consensus
Back Show alignment and domain information
Probab=99.88 E-value=7.9e-23 Score=138.30 Aligned_cols=64 Identities=44% Similarity=0.742 Sum_probs=61.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|||+||++|||||||++.++.+||.+||+||+|+.|+++|.+||++++ +.+||..+|+|.+.-+
T Consensus 366 MANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 366 MANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred eccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 999999999999999999999999999999999999999999999999 6799999999988755
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
Back Show alignment and domain information
Probab=99.87 E-value=2.1e-22 Score=122.14 Aligned_cols=62 Identities=35% Similarity=0.582 Sum_probs=55.8
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCC-----CceEEeEEEccHHHHHHHHhCCCCC-----CCeecceEEeee
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVVANS 62 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~v~I~~c 62 (66)
||+++ |++++|||||++.+.++||+ +|+|||+|++|||+|++|+++++.. ++|..+|+|.+.
T Consensus 83 ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 83 MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 88875 89999999999999999995 7999999999999999999999833 589999999763
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
Back Show alignment and domain information
Probab=99.86 E-value=1.1e-21 Score=116.80 Aligned_cols=61 Identities=57% Similarity=0.927 Sum_probs=57.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~ 61 (66)
|++.++++++|||||++.+.++||++|+|||+|++||++|++|++.++ ++++|.++|+|.+
T Consensus 85 ~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 85 MANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 678888999999999999999999999999999999999999999999 5899999999964
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
>KOG0865|consensus
Back Show alignment and domain information
Probab=99.85 E-value=8.1e-22 Score=121.17 Aligned_cols=65 Identities=69% Similarity=1.120 Sum_probs=63.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
|||.+|++|+|||||++.+..|||++|+|||+|.+||+++++++.....+++|.++|.|.+||.+
T Consensus 103 maNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 103 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred hhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999975
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40
Back Show alignment and domain information
Probab=99.79 E-value=3.1e-19 Score=110.35 Aligned_cols=45 Identities=42% Similarity=0.718 Sum_probs=42.3
Q ss_pred CcccC--CCCCCceEEEEcC-------CCCCCCCCceEEeEEEccHHHHHHHHh
Q psy442 1 MANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 1 Ma~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~V~~G~~vl~~I~~ 45 (66)
||+++ |++++|||||+++ +.++||++|+|||+|++|||+|++|+.
T Consensus 111 Ma~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 111 MARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred EccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 88887 6999999999998 799999999999999999999999974
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>KOG0415|consensus
Back Show alignment and domain information
Probab=99.78 E-value=3.8e-19 Score=119.56 Aligned_cols=65 Identities=40% Similarity=0.612 Sum_probs=59.2
Q ss_pred CcccCCCCCCceEEEEcCC-CCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|++.|.+.+||||||||+. +..||++|+|||+|.+|+|+|.+|+..-. .+++|+++|+|.+.-+|
T Consensus 96 mvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiL 162 (479)
T KOG0415|consen 96 MVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIIL 162 (479)
T ss_pred eecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEe
Confidence 7899999999999999965 67999999999999999999999988766 78999999999987654
>KOG0885|consensus
Back Show alignment and domain information
Probab=99.60 E-value=9.4e-16 Score=103.48 Aligned_cols=65 Identities=31% Similarity=0.477 Sum_probs=60.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++.+.||||||+||+++|+|++++++||+|+ +-.-.+.+|..+.+ .+.||..+-+|.+|.++
T Consensus 101 mana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 101 MANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred ecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 8999999999999999999999999999999999 57778888988888 58899999999999875
>KOG0882|consensus
Back Show alignment and domain information
Probab=90.19 E-value=0.42 Score=34.25 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeee
Q psy442 8 TNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANS 62 (66)
Q Consensus 8 ~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~c 62 (66)
..+-+|++.-...+.+..+..|||++..+-++++.|+...+ .+..|..++.|.+.
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 34568888888888899999999999999999999999888 67788888877654
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 66
d1qnga_ 170
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
2e-22 d2igva1 172
b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno
2e-21 d2r99a1 161
b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
3e-21 d2z6wa1 164
b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c
8e-21 d1ihga2 195
b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain
1e-19 d2cfea1 162
b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s
2e-19 d1xo7a_ 166
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom
4e-19 d2c3ba1 171
b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper
4e-19 d1qoia_ 173
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom
8e-19 d1a33a_ 174
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (
7e-18 d1z81a1 186
b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas
3e-17 d1h0pa_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd
2e-15 d2rmca_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
5e-15 d2ok3a1 159
b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B
6e-14 d1zkca1 178
b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso
7e-13 d2a2na1 164
b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma
2e-12 d1xwna1 166
b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome
2e-12 d2b71a1 169
b.62.1.1 (A:23-191) Cyclophilin-like protein PY006
3e-12 d2fu0a1 155
b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {
4e-12 d1w74a_ 171
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
1e-09 d1v9ta_ 166
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
3e-08 d1lopa_ 164
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
7e-08
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Score = 81.8 bits (201), Expect = 2e-22
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTN SQFFIT V WLD +HVVFG V+EG++VV+++E G++SG + +V+
Sbjct: 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVIT 165
Query: 61 NSGQL 65
+ G+L
Sbjct: 166 DCGEL 170
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Score = 79.9 bits (196), Expect = 2e-21
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGLDVVK +ES GSQSGK K ++A
Sbjct: 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIA 166
Query: 61 NSGQL 65
+ GQL
Sbjct: 167 DCGQL 171
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 3e-21
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A
Sbjct: 98 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA 157
Query: 61 NSGQ 64
+ G+
Sbjct: 158 DCGE 161
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 8e-21
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 99 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 158
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 159 DCGQLS 164
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.3 bits (184), Expect = 1e-19
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T LD +HVVFG V++G+ V K LE++ + K +K V+A
Sbjct: 119 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIA 178
Query: 61 NSGQLS 66
G+L
Sbjct: 179 ECGELK 184
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Score = 74.0 bits (181), Expect = 2e-19
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK +E+ GS SGK +I +A
Sbjct: 98 MANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIA 157
Query: 61 NSG 63
G
Sbjct: 158 KCG 160
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Score = 73.3 bits (179), Expect = 4e-19
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MANAGPN+NGSQFF+TT T WLD RHVVFG VVEG+DVVKK+E+ + + K K + +
Sbjct: 101 MANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160
Query: 60 ANSGQL 65
+ G L
Sbjct: 161 NDCGVL 166
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Score = 73.4 bits (179), Expect = 4e-19
Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKK 56
MANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++GS SG +++ +
Sbjct: 103 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTR 162
Query: 57 IVVANSGQL 65
+ N G+L
Sbjct: 163 PKIVNCGEL 171
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Score = 73.0 bits (178), Expect = 8e-19
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MAN+GP+TNG QFFIT K WLD +HVVFG +++GL V++K+E++ + + K +V+
Sbjct: 108 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 167
Query: 60 ANSGQL 65
+ G++
Sbjct: 168 SQCGEM 173
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Score = 70.2 bits (171), Expect = 7e-18
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MAN GPNTNGSQFFITT L+N HVVFG VV G +VV K+E + + S + +V+
Sbjct: 108 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 167
Query: 60 ANSGQL 65
N G+L
Sbjct: 168 LNCGEL 173
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Score = 69.1 bits (168), Expect = 3e-17
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG--LDVVKKLESM--GSQSGKTSKK 56
MAN+GPNTNG QFFITT K WLD ++VVFG +++ L ++KK+E++ K
Sbjct: 118 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIP 177
Query: 57 IVVANSGQL 65
I V G+L
Sbjct: 178 INVVECGEL 186
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Score = 64.1 bits (155), Expect = 2e-15
Identities = 38/67 (56%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+K+E G + + +++
Sbjct: 103 MANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII 162
Query: 60 ANSGQLS 66
A SG ++
Sbjct: 163 AASGHIA 169
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Score = 63.3 bits (153), Expect = 5e-15
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E + + +
Sbjct: 104 MANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI 163
Query: 60 ANSGQL 65
NSG++
Sbjct: 164 VNSGKI 169
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 6e-14
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE + ++ + +
Sbjct: 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVH 148
Query: 59 VAN 61
+ +
Sbjct: 149 IKD 151
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (138), Expect = 7e-13
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +E++ ++ + ++I
Sbjct: 89 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIR 148
Query: 59 V 59
+
Sbjct: 149 I 149
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 2e-12
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++ ++ K + +
Sbjct: 98 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVS 157
Query: 59 VAN 61
+ N
Sbjct: 158 IIN 160
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 2e-12
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++ + + S + + +
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Score = 55.6 bits (133), Expect = 3e-12
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
M+N GPNTN SQFFIT LD +H +F V + + ++ + S+ + + K + +
Sbjct: 105 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 164
Query: 60 ANSG 63
+
Sbjct: 165 LRTS 168
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Score = 55.3 bits (132), Expect = 4e-12
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
MAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E + + K + I +
Sbjct: 90 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKI 149
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.7 bits (115), Expect = 1e-09
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQSGKTSKKIV 58
MANAGP TNGSQFFIT KT L+ RH +FG V+ E VV+ + + V
Sbjct: 104 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPV 163
Query: 59 VANSGQLS 66
V S +S
Sbjct: 164 VIESITIS 171
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (105), Expect = 3e-08
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 6 PNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESM-----GSQSGKTSK 55
++ SQFFI A+LD+ + VFG VV+G+DV K+ + G SK
Sbjct: 96 KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSK 155
Query: 56 KIVVANSGQL 65
+V+ ++ L
Sbjct: 156 PVVILSATVL 165
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (103), Expect = 7e-08
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 1 MANAGPNTNGSQFFITTVKTAWL--------DNRHVVFGSVVEGLDVVKKLESMGSQSGK 52
P++ +QFFI V +L + VF VV+G+D V K++ + +
Sbjct: 86 ARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSG 145
Query: 53 TSK 55
+
Sbjct: 146 MHQ 148
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 66
d2z6wa1 164
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.95 d2igva1 172
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.95 d1qnga_ 170
Cyclophilin (eukaryotic) {Plasmodium falciparum [T
99.95 d1qoia_ 173
Cyclophilin (eukaryotic) {Human (Homo sapiens), U4
99.95 d1xo7a_ 166
Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId
99.95 d1a33a_ 174
Cyclophilin (eukaryotic) {Nematode (Brugia malayi)
99.95 d1ihga2 195
Cyclophilin 40 isomerase domain {Cow (Bos taurus)
99.95 d2r99a1 161
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.95 d2cfea1 162
Cyclophilin-like allergen Mal s 6 {Malassezia symp
99.94 d2rmca_ 182
Cyclophilin (eukaryotic) {Mouse (Mus musculus), va
99.94 d1h0pa_ 182
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.94 d1z81a1 186
Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId
99.94 d2ok3a1 159
Cyclophilin-like protein PPIL3B {Human (Homo sapie
99.93 d2c3ba1 171
Cyclophilin (eukaryotic) {Aspergillus fumigatus [T
99.93 d2b71a1 169
Cyclophilin-like protein PY00693 {Plasmodium yoeli
99.92 d1zkca1 178
Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop
99.92 d2fu0a1 155
Putative cyclophilin PFE0505w {Plasmodium falcipar
99.91 d2a2na1 164
Peptidylprolyl isomerase domain and WD repeat-cont
99.91 d1w74a_ 171
Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob
99.91 d1xwna1 166
Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
99.89 d1v9ta_ 166
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.88 d1lopa_ 164
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.84
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-29 Score=148.81 Aligned_cols=66 Identities=76% Similarity=1.205 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
||+++|++++|||||++.+.++||++|+|||+|++|||+|++|+++++.+++|.++|+|.+||+|+
T Consensus 99 ma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~cG~l~ 164 (164)
T d2z6wa1 99 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164 (164)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEECC
T ss_pred EecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCCEEEEeCeecC
Confidence 789999999999999999999999999999999999999999999999999999999999999985
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Probab=99.95 E-value=6.6e-29 Score=149.70 Aligned_cols=66 Identities=73% Similarity=1.097 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
||+++|++++|||||++.++++||++|+|||+|++|||+|++|++.++.+++|.++|+|.+||+|+
T Consensus 107 ma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~cG~l~ 172 (172)
T d2igva1 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLK 172 (172)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEEC
T ss_pred EeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCCeEEEeccccC
Confidence 789999999999999999999999999999999999999999999999999999999999999985
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.95 E-value=7e-29 Score=149.25 Aligned_cols=65 Identities=55% Similarity=1.011 Sum_probs=63.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
||+.+|++++|||||+++++++||++|+|||||++|||+|++|++.++.+++|.++|+|.+||+|
T Consensus 106 ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~CG~l 170 (170)
T d1qnga_ 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170 (170)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC
T ss_pred EeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccCEEEEeeEcC
Confidence 78999999999999999999999999999999999999999999999999999999999999996
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Probab=99.95 E-value=5.3e-29 Score=149.88 Aligned_cols=65 Identities=46% Similarity=0.902 Sum_probs=63.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
||+++|++++|||||++++.++||++|+|||+|++|||+|++|+++++ .+++|.++|+|.+||+|
T Consensus 108 ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~cGel 173 (173)
T d1qoia_ 108 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173 (173)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred eeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence 789999999999999999999999999999999999999999999999 78899999999999986
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=6.9e-29 Score=148.83 Aligned_cols=65 Identities=60% Similarity=0.982 Sum_probs=62.8
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
||+++|++++|||||+++++++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+||+|
T Consensus 101 ~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl 166 (166)
T d1xo7a_ 101 MANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166 (166)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred ecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence 789999999999999999999999999999999999999999999998 78899999999999986
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Probab=99.95 E-value=1.6e-28 Score=147.88 Aligned_cols=65 Identities=52% Similarity=0.826 Sum_probs=62.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|++.+|++++|||||++++.|+||++|+|||||++|||||++|+++++ .+++|.++|+|.+||+|
T Consensus 108 ~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~cGel 173 (174)
T d1a33a_ 108 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173 (174)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred eeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence 678899999999999999999999999999999999999999999998 78899999999999997
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1e-28 Score=151.44 Aligned_cols=66 Identities=56% Similarity=0.836 Sum_probs=63.8
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|++.+|++++|||||+++++++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||+|+
T Consensus 119 m~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i~I~~cG~l~ 184 (195)
T d1ihga2 119 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELK 184 (195)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEEEEEEC
T ss_pred eeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcCCCeEEEECcccC
Confidence 788899999999999999999999999999999999999999999999999999999999999985
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.2e-28 Score=145.59 Aligned_cols=64 Identities=59% Similarity=1.079 Sum_probs=62.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~ 64 (66)
||+++|++++|||||++.++++||++|+|||||++|||+|++|+..++.+++|.++|+|.+||+
T Consensus 98 ~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~CGe 161 (161)
T d2r99a1 98 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 161 (161)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEE
T ss_pred ecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCCEEEEeCCC
Confidence 7889999999999999999999999999999999999999999998889999999999999997
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Probab=99.94 E-value=2.6e-27 Score=141.61 Aligned_cols=65 Identities=63% Similarity=1.025 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
||+.+|++++|||||++.+.++||++|+|||||++|||+|++|+..++++++|.++|+|.+||+.
T Consensus 98 m~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~I~~cgv~ 162 (162)
T d2cfea1 98 MANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCGVC 162 (162)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEC
T ss_pred EeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeEEEeeEcC
Confidence 78889999999999999999999999999999999999999999988899999999999999983
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Probab=99.94 E-value=3.1e-27 Score=143.47 Aligned_cols=66 Identities=48% Similarity=0.871 Sum_probs=63.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||+.++++++|||||++.+.++||++|+|||+|++|||+|++|+++++ .+++|.++|+|.+||+|+
T Consensus 104 ma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~~g~l~ 170 (182)
T d2rmca_ 104 MANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID 170 (182)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred hhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEEEeeEEe
Confidence 788999999999999999999999999999999999999999999998 789999999999999973
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Probab=99.94 E-value=2.4e-27 Score=143.85 Aligned_cols=66 Identities=56% Similarity=0.998 Sum_probs=63.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||+.++++++|||||++.+.++||++|+|||||++|||+|++|++.++ ++++|.++|+|.+||+|.
T Consensus 103 ~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~cG~l~ 169 (182)
T d1h0pa_ 103 MANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169 (182)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEEEEEEE
T ss_pred ecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEECCeEe
Confidence 788899999999999999999999999999999999999999999998 778999999999999973
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.94 E-value=2.8e-27 Score=144.04 Aligned_cols=65 Identities=49% Similarity=0.800 Sum_probs=61.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEcc--HHHHHHHHhCCC--CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG--LDVVKKLESMGS--QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G--~~vl~~I~~~~~--~~~~P~~~v~I~~cg~~ 65 (66)
|++.+|++++|||||++++.++||++|+|||||++| ||+|++|+++++ ..++|.++|+|.+||+|
T Consensus 118 ~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~CGel 186 (186)
T d1z81a1 118 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186 (186)
T ss_dssp ECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred hhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEeCCcC
Confidence 678899999999999999999999999999999998 999999999988 46899999999999986
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.1e-26 Score=137.20 Aligned_cols=66 Identities=39% Similarity=0.624 Sum_probs=62.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC--CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~--~~~~P~~~v~I~~cg~~~ 66 (66)
||+++|++++|||||++++.|+||++|+|||||++||++|++|+++++ ++++|..+|+|.+|.++.
T Consensus 89 ma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~ 156 (159)
T d2ok3a1 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (159)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred EeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEe
Confidence 789999999999999999999999999999999999999999999998 457899999999999873
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Probab=99.93 E-value=2.2e-26 Score=138.57 Aligned_cols=65 Identities=57% Similarity=0.952 Sum_probs=51.9
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEc--cHHHHHHHHhCCCC--CCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQ--SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~~~~--~~~P~~~v~I~~cg~~ 65 (66)
||+++|++++|||||++.+.++||++|+|||||++ ||++|++|+++++. ..+|..+|+|.+||+|
T Consensus 103 ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel 171 (171)
T d2c3ba1 103 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171 (171)
T ss_dssp EC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred eeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence 78999999999999999999999999999999994 99999999999984 3479999999999996
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.92 E-value=5.2e-26 Score=136.67 Aligned_cols=63 Identities=32% Similarity=0.573 Sum_probs=60.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
|++++|++++|||||++++.++||++|+|||||++|||+|++|+++++ .+++|..+|+|.+|+
T Consensus 105 ~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 168 (169)
T d2b71a1 105 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168 (169)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred hhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence 788999999999999999999999999999999999999999999998 789999999999985
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-25 Score=134.88 Aligned_cols=65 Identities=42% Similarity=0.740 Sum_probs=62.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC--CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~--~~~~P~~~v~I~~cg~~ 65 (66)
||++++++++|||||+++++++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+|.++
T Consensus 89 ma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il 155 (178)
T d1zkca1 89 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 155 (178)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred EeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence 789999999999999999999999999999999999999999999988 56899999999999985
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.91 E-value=3.4e-25 Score=131.26 Aligned_cols=64 Identities=48% Similarity=0.777 Sum_probs=60.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|++.+|++++|||||++++.++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+|.+
T Consensus 90 ~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i 154 (155)
T d2fu0a1 90 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 154 (155)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred ecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence 577889999999999999999999999999999999999999999998 8899999999999853
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.2e-25 Score=131.23 Aligned_cols=64 Identities=48% Similarity=0.838 Sum_probs=60.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC--CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~--~~~~P~~~v~I~~cg~ 64 (66)
|++.++++++|||||++++.++||++|+|||+|++||++|++|+++++ .+++|.++|+|.+|.+
T Consensus 98 ~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i 163 (164)
T d2a2na1 98 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 163 (164)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred hhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence 678899999999999999999999999999999999999999999999 4589999999999864
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=5.4e-25 Score=131.98 Aligned_cols=64 Identities=42% Similarity=0.690 Sum_probs=60.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE--ccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~--~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|++.+|++++|||||++++.|+||++|+|||||+ +|||+|++|+++++ .+++|..+|+|.+|.+
T Consensus 104 ~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~~v~i 170 (171)
T d1w74a_ 104 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 170 (171)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEE
T ss_pred EEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEEEEEE
Confidence 6788999999999999999999999999999999 49999999999998 7899999999999864
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.3e-24 Score=130.15 Aligned_cols=62 Identities=39% Similarity=0.804 Sum_probs=59.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANS 62 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~c 62 (66)
||+++|++++|||||++++.++||++|+|||+|++|||+|++|+++++ .+++|.++|+|.+.
T Consensus 100 m~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a 162 (166)
T d1xwna1 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162 (166)
T ss_dssp EEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEE
T ss_pred ecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEe
Confidence 678889999999999999999999999999999999999999999998 78899999999875
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=7.9e-24 Score=126.56 Aligned_cols=66 Identities=36% Similarity=0.590 Sum_probs=58.4
Q ss_pred Ccc-cCCCCCCceEEEEcCCCCCCCCC-----ceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeecC
Q psy442 1 MAN-AGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~-~~~~~~~sqFfI~l~~~~~ld~~-----~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~~ 66 (66)
|++ .+|++++|||||++++.++||+. |+|||+|++|||+|++|+++++. .++|.++|+|.+|++|+
T Consensus 90 ~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~vlp 166 (166)
T d1v9ta_ 90 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166 (166)
T ss_dssp ECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEECC
T ss_pred EEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeEEEEEEEcC
Confidence 555 56999999999999999988864 89999999999999999999872 35899999999999985
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.8e-21 Score=116.01 Aligned_cols=65 Identities=26% Similarity=0.470 Sum_probs=56.6
Q ss_pred Ccc-cCCCCCCceEEEEcCCC--------CCCCCCceEEeEEEccHHHHHHHHhCCC-CC----CCeecceEEeeeeec
Q psy442 1 MAN-AGPNTNGSQFFITTVKT--------AWLDNRHVVFGSVVEGLDVVKKLESMGS-QS----GKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~-~~~~~~~sqFfI~l~~~--------~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~----~~P~~~v~I~~cg~~ 65 (66)
||+ .+|++++|||||++.+. +++|++|+|||+|++|||+|++|+++++ .. ++|.++|+|.++-+.
T Consensus 85 ~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~~v~I~ 163 (164)
T d1lopa_ 85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_dssp ECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEEEC
T ss_pred EeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEEEEEEe
Confidence 454 56999999999999865 7789999999999999999999999988 22 489999999998764
