Psyllid ID: psy4442

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-----

MSAPVSKPCSNVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPSDRRGGGTEHELSSVSYRNVQSVKTVPYPPCSYRDTSKAEWTTFKQDCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS

ccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccHHccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccEEEEEEccccccccEEEEcccccEEEEEEEEEEEEEEEEcccccEEEccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEccccccccccccccEEEEcccccccccEEEEcccccEEEEEEcccHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccEEEEcccccccccccccEEEEcccccHHHHHHHHHHcccccccEEEEEccccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHcccccccccccEEEEHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccc

ccccccccccHHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHcEEHHHHHcccccccccccccccccEEEEEccccccEEEEcccccccccccccccccccccccccEEEcccHHHHEEEEEcEEEEEEEcccccEEEEEEEccHHHHEEEEHHHHHEEEEEEccccccccccccccccccccccccEEEEEcccccccccccccEccEEEEEccEEEEcccccccccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHcccEEEcHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEccccHHHHHHHHHHEHHHcccEEEEEccccccEEEEEccEcccccccccHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHcccccccHHHHHcccccccccccHHHHHHHHHHHHHHHccccccEcHHHHHHHHHHHHHHcccc

msapvskpcsnvvRHRLTQALVVMVNAALFVKLAQHTYANLFGTFlcnsskdredkmvTSQTFSVWKflnhgsyrnhlynennceRVSMLKVlgtmpgimlyplrepvyehkslvepsipklngeyydyvgstvdgklclsnyrlchqdnngsnasitffniplglienveikEVHWLQIVCKDvtsckkgsglghvkpryssrshftvtlmepsdrrgggtehelSSVSYrnvqsvktvpyppcsyrdtskaewTTFKQDCTTRIlqgegskrgknepyprvlyrdtfqseghvqKRVTTYLILRMLVQGtfkrgtrskEVRLYLVYQgpfqcvrltyrsvlptgtrstsewermkfdeapvrwrqcsanqnyelcetypkyvivpsgiddgllkssadfrsnqrfpVVVWRHQkngaviarssqpqvgvlgwrkKEDEMLLEQITKagsggdesskrfdrenwnrydlivpkakkegigesqpfrertlpgkdeirsgwwkavdgtswrapsntswwkavdgtsWLQNMHLLLVSAVNLAATIELESRSVLVhcsdgwdrtpqLVSLAEIlldpyyrtvKGFQVLVEREWLefghkfddrcgrndksserspvFLQWLDCVYQLLTQfptefqfnsmflfptefqfnsmflgs

msapvskpcsnvvRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVtsckkgsglghvkpryssrshftvtlmepsdrrgggTEHElssvsyrnvqsvktvpyppcsyrdtskaewttFKQDCttrilqgegskrgknepyPRVLYrdtfqseghvqKRVTTYLILRMLVQgtfkrgtrskeVRLYLVYqgpfqcvrltyrsvlptgtrstsewermKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHqkngaviarssqpqvgvlGWRKKEDEMLLEQitkagsggdesskrfdrenwnrydlivpkakkegigesqpfrertlpgkdeirsgwwkavdgtswrapsntsWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFghkfddrcgrndkssersPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS

**********NVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSS*****KMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCKKGSGLGHV***************************************VKTVPYPPCSYRDTSKAEWTTFKQDCTTRIL************YPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWR*****************************WNRYDLIV************************IRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCG*********PVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMF***

*SAPVSKPCSNVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCK*******VKPRYSSRSHFTVT***********************************************F**************************YRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGA********************EMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS

*********SNVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLM*****************SYRNVQSVKTVPYPPCSYRDTSKAEWTTFKQDCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQIT***********RFDRENWNRYDLIVPKAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDR*********RSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS

*****SKPCSNVVRHRLTQALVVMVNAALFVKLAQHTYANLFGTFLCNSSKDREDKMVTSQTFSVWKFLNHGSYRNHLYNENNCERVSMLKVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIKEVHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPS********HELSSVSYRNVQSVKTVPYPPCSYRDTSKAEWTTFKQDCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQPFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		655	2.2.26 [Sep-21-2011]
Q7ZXF1		1078	Myotubularin-related prot	N/A	N/A	0.448	0.272	0.414	2e-65
Q13615		1198	Myotubularin-related prot	yes	N/A	0.448	0.245	0.418	2e-65
Q5PQT2		1194	Myotubularin-related prot	yes	N/A	0.448	0.246	0.421	3e-65
Q9NYA4		1195	Myotubularin-related prot	no	N/A	0.447	0.245	0.415	4e-65
Q91XS1		1190	Myotubularin-related prot	yes	N/A	0.447	0.246	0.421	5e-65
Q8K296		1196	Myotubularin-related prot	no	N/A	0.448	0.245	0.415	1e-64
A6QLT2		643	Myotubularin-related prot	no	N/A	0.476	0.485	0.396	1e-59
Q13614		643	Myotubularin-related prot	no	N/A	0.439	0.447	0.412	2e-59
Q9Z2D1		643	Myotubularin-related prot	no	N/A	0.439	0.447	0.409	2e-59
Q5REB9		643	Myotubularin-related prot	no	N/A	0.439	0.447	0.409	9e-59

>sp\|Q7ZXF1\|MTMR4_XENLA Myotubularin-related protein 4 OS=Xenopus laevis GN=mtmr4 PE=2 SV=1	Back alignment and function desciption

 Score =  251 bits (640), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/340 (41%), Positives = 188/340 (55%), Gaps = 46/340 (13%)

Query: 347 TRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQR 406
           +R   E +RM FD     WR    N NY+LC++YP+ ++VP  I D  L++ A FRS +R
Sbjct: 158 SRFQIELKRMGFDLQNA-WRVSEINNNYKLCQSYPQKLLVPVWITDKELENVATFRSWKR 216

Query: 407 FPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKA----------------- 449
            PVVV+RH + GAVIAR SQP++   GWR  +DE L+  I KA                 
Sbjct: 217 IPVVVYRHTRTGAVIARCSQPEISWWGWRNADDEYLVTSIAKACALNPAVRMPNGNPSNK 276

Query: 450 --GSGGDESSKRFDRE------------------NWNRYDLIVPKAKKEGIGESQ---PF 486
               G D S   FD                    +   Y   V    K G  E +   P 
Sbjct: 277 GNNDGSDNSDTDFDSSLTACPVEGGGVPQKLLIVDARSYTAAVANRAKGGGCECEEYYPN 336

Query: 487 RERTLPGKDEIRS--GWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAAT 544
            E    G   I S    ++ +     + P   +W  A++ T WLQ++  +L +A  +A+ 
Sbjct: 337 CEVAFMGMANIHSIRNSFQYLRAVCNQVPDPGNWLSALESTKWLQHLSAMLKAATVVASA 396

Query: 545 IELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCG 604
           ++ E R VLVHCSDGWDRTPQ+VSLA+ILLDPYYRT++GFQVLVE +WL++GHKF DRCG
Sbjct: 397 VDREERPVLVHCSDGWDRTPQIVSLAKILLDPYYRTLEGFQVLVETDWLDYGHKFADRCG 456

Query: 605 RNDK---SSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL 641
             +     +E+ PVFLQWLDC++QLL QFP  F+FN  FL
Sbjct: 457 HQENREDQNEQCPVFLQWLDCIHQLLFQFPCHFEFNHAFL 496

Dephosphorylates proteins phosphorylated on Ser, Thr, and Tyr residues and low molecular weight phosphatase substrate para-nitrophenylphosphate. Phosphorylates phosphatidylinositol 3,4,5-trisphosphate (PIP3).
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp\|Q13615\|MTMR3_HUMAN Myotubularin-related protein 3 OS=Homo sapiens GN=MTMR3 PE=1 SV=3	Back alignment and function description

>sp\|Q5PQT2\|MTMR3_RAT Myotubularin-related protein 3 OS=Rattus norvegicus GN=Mtmr3 PE=2 SV=1	Back alignment and function description

>sp\|Q9NYA4\|MTMR4_HUMAN Myotubularin-related protein 4 OS=Homo sapiens GN=MTMR4 PE=2 SV=2	Back alignment and function description

>sp\|Q91XS1\|MTMR4_MOUSE Myotubularin-related protein 4 OS=Mus musculus GN=Mtmr4 PE=1 SV=1	Back alignment and function description

>sp\|Q8K296\|MTMR3_MOUSE Myotubularin-related protein 3 OS=Mus musculus GN=Mtmr3 PE=1 SV=2	Back alignment and function description

>sp\|A6QLT2\|MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1	Back alignment and function description

>sp\|Q13614\|MTMR2_HUMAN Myotubularin-related protein 2 OS=Homo sapiens GN=MTMR2 PE=1 SV=4	Back alignment and function description

>sp\|Q9Z2D1\|MTMR2_MOUSE Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3	Back alignment and function description

>sp\|Q5REB9\|MTMR2_PONAB Myotubularin-related protein 2 OS=Pongo abelii GN=MTMR2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		655
328778545		1009	PREDICTED: myotubularin-related protein	0.462	0.300	0.450	8e-70
380017361		1009	PREDICTED: myotubularin-related protein	0.462	0.300	0.447	1e-69
332030042		1015	Myotubularin-related protein 3 [Acromyrm	0.462	0.298	0.455	2e-69
322789701		996	hypothetical protein SINV_00661 [Solenop	0.462	0.304	0.446	8e-69
307169722		1033	Myotubularin-related protein 3 [Camponot	0.462	0.293	0.446	9e-69
156542522		1010	PREDICTED: myotubularin-related protein	0.468	0.303	0.441	1e-68
91084687		1035	PREDICTED: similar to myotubularin [Trib	0.438	0.277	0.450	1e-68
383851403		1231	PREDICTED: myotubularin-related protein	0.462	0.246	0.437	4e-68
307198198		1044	Myotubularin-related protein 3 [Harpegna	0.462	0.290	0.437	9e-68
350403381		1021	PREDICTED: myotubularin-related protein	0.462	0.296	0.443	1e-66

>gi\|328778545\|ref\|XP_397104.4\| PREDICTED: myotubularin-related protein 4-like [Apis mellifera]	Back alignment and taxonomy information

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 150/333 (45%), Positives = 198/333 (59%), Gaps = 30/333 (9%)

Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
           SE ER+KF+     WR    N++Y +C +YP  ++VPS + D  LK+ A++RS +R PVV
Sbjct: 169 SEVERLKFN-LHTTWRISQINKDYRVCPSYPPLLLVPSCVPDDKLKAGAEYRSFRRIPVV 227

Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGS---GGDESSKRF-----DR 462
           VWRH  NGAVIARSSQP+VG LGWR  EDEMLL+ ++ A S   G  +SS  +     D 
Sbjct: 228 VWRHVNNGAVIARSSQPEVGWLGWRNPEDEMLLQGLSDACSYDKGKSDSSSIYPDSGDDN 287

Query: 463 ENWNRY-DLIVPKAKKEGIGESQPFRER----------------TLPGKDEIRSGWWKAV 505
              NR   +++  A+      +   R                   LP    IR   + AV
Sbjct: 288 VTTNRTKKVLIVDARSYSTAFANRARGGGYEYPGYYPSCDIQFMNLPNIHSIRKS-FHAV 346

Query: 506 DGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQ 565
                      +W   ++GT WLQ+M  LL +AV +A+ IE + R VLVHCSDGWDRTPQ
Sbjct: 347 RQLCASDADQPNWLSLLEGTRWLQHMSGLLRAAVTVASAIERDGRPVLVHCSDGWDRTPQ 406

Query: 566 LVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN---DKSSERSPVFLQWLDC 622
           +V+LA+ILLDPYYRT++GFQ+L EREWL+FGHKF DRCG+    +  +ER PVFLQWLDC
Sbjct: 407 IVALAQILLDPYYRTMEGFQILCEREWLDFGHKFADRCGQTVGCEDPNERCPVFLQWLDC 466

Query: 623 VYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655
           V+QL+ QF   FQ +S +L        S   G+
Sbjct: 467 VHQLILQFKCSFQMSSAYLVKLAQHTYSQLFGT 499

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|380017361\|ref\|XP_003692626.1\| PREDICTED: myotubularin-related protein 4-like [Apis florea]	Back alignment and taxonomy information

>gi\|332030042\|gb\|EGI69867.1\| Myotubularin-related protein 3 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|322789701\|gb\|EFZ14867.1\| hypothetical protein SINV_00661 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|307169722\|gb\|EFN62287.1\| Myotubularin-related protein 3 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|156542522\|ref\|XP_001600658.1\| PREDICTED: myotubularin-related protein 4-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|91084687\|ref\|XP_968830.1\| PREDICTED: similar to myotubularin [Tribolium castaneum] gi\|270008930\|gb\|EFA05378.1\| hypothetical protein TcasGA2_TC015545 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|383851403\|ref\|XP_003701222.1\| PREDICTED: myotubularin-related protein 3-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307198198\|gb\|EFN79213.1\| Myotubularin-related protein 3 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|350403381\|ref\|XP_003486786.1\| PREDICTED: myotubularin-related protein 3-like [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		655
UNIPROTKB\|E1C2A9		1199	MTMR3 "Uncharacterized protein	0.196	0.107	0.598	6e-70
UNIPROTKB\|F1M0Y8		1160	Mtmr3 "Myotubularin-related pr	0.196	0.111	0.598	1.1e-69
RGD\|1310972		1194	Mtmr3 "myotubularin related pr	0.196	0.108	0.598	1.3e-69
UNIPROTKB\|Q5PQT2		1194	Mtmr3 "Myotubularin-related pr	0.196	0.108	0.598	1.3e-69
UNIPROTKB\|F1MFT9		1113	MTMR3 "Uncharacterized protein	0.196	0.115	0.583	4.1e-69
ZFIN\|ZDB-GENE-091204-465		1170	mtmr3 "myotubularin related pr	0.196	0.110	0.583	4.8e-69
UNIPROTKB\|F1PJD1		1198	MTMR3 "Uncharacterized protein	0.196	0.107	0.583	5e-69
UNIPROTKB\|F1RFF0		1195	MTMR3 "Uncharacterized protein	0.196	0.107	0.583	6.3e-69
UNIPROTKB\|Q13615		1198	MTMR3 "Myotubularin-related pr	0.196	0.107	0.590	7.9e-69
MGI\|MGI:1921552		1196	Mtmr3 "myotubularin related pr	0.196	0.107	0.590	1.3e-68

UNIPROTKB\|E1C2A9 MTMR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 443 (161.0 bits), Expect = 6.0e-70, Sum P(3) = 6.0e-70
 Identities = 79/132 (59%), Positives = 100/132 (75%)

Query:   513 PSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEI 572
             P   +W  A++ T WLQ++ +LL SA+ +   ++ + R VLVHCSDGWDRTPQ+V+LA++
Sbjct:   372 PDPGNWLSALESTKWLQHLSVLLKSALLVVHAVDRDQRPVLVHCSDGWDRTPQIVALAKL 431

Query:   573 LLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRNDKS---SERSPVFLQWLDCVYQLLTQ 629
             LLDPYYRT +GFQVLVE EWL+FGHKF DRCG  + S   +ER PVFLQWLDCV+QL  Q
Sbjct:   432 LLDPYYRTTEGFQVLVEMEWLDFGHKFADRCGHGENSDDLNERCPVFLQWLDCVHQLQRQ 491

Query:   630 FPTEFQFNSMFL 641
             FP  F+FN  FL
Sbjct:   492 FPCSFEFNEAFL 503

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004438 "phosphatidylinositol-3-phosphatase activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046856 "phosphatidylinositol dephosphorylation" evidence=IEA

UNIPROTKB\|F1M0Y8 Mtmr3 "Myotubularin-related protein 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1310972 Mtmr3 "myotubularin related protein 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5PQT2 Mtmr3 "Myotubularin-related protein 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MFT9 MTMR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091204-465 mtmr3 "myotubularin related protein 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PJD1 MTMR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFF0 MTMR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13615 MTMR3 "Myotubularin-related protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1921552 Mtmr3 "myotubularin related protein 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.691
3rd Layer	3.1.3.48	0.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		655
pfam13849		55	pfam13849, Y_phosphatase_m, Myotubularin Y_phospha	2e-34
pfam06602		118	pfam06602, Myotub-related, Myotubularin-related	1e-32
cd13342		147	cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) relate	1e-09
cd13341		148	cd13341, PH-GRAM_MTMR3, Myotubularian (MTM) relate	4e-09
cd13209		121	cd13209, PH-GRAM_MTMR3_MTMR4, Myotubularian (MTM)	2e-07
smart00404		105	smart00404, PTPc_motif, Protein tyrosine phosphata	1e-04
smart00012		105	smart00012, PTPc_DSPc, Protein tyrosine phosphatas	1e-04
cd10570		94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	2e-04
pfam02893		60	pfam02893, GRAM, GRAM domain	0.003

>gnl\|CDD\|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like	Back alignment and domain information

 Score =  124 bits (314), Expect = 2e-34
 Identities = 43/55 (78%), Positives = 49/55 (89%)

Query: 550 RSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCG 604
            SVLVHCSDGWDRT QL SLA++LLDPYYRT++GFQVL+E+EWL FGH F DRCG
Sbjct: 1   SSVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWLSFGHPFSDRCG 55

This short region is highly conserved and seems to be common to many myotubularin proteins with protein tyrosine pyrophosphate activity. As the family has a number of highly conserved residues such as histidine, cysteine, glutamine and aspartate, it is possible that this represents a catalytic core of the active enzymatic part of the proteins. Length = 55

>gnl\|CDD\|219103 pfam06602, Myotub-related, Myotubularin-related	Back alignment and domain information

>gnl\|CDD\|241496 cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

>gnl\|CDD\|241495 cd13341, PH-GRAM_MTMR3, Myotubularian (MTM) related 3 protein (MTMR3) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

>gnl\|CDD\|241363 cd13209, PH-GRAM_MTMR3_MTMR4, Myotubularian (MTM) related 3 and 4 proteins (MTMR3 and MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 101 LYPLREPVYEHKSLVEPSIPKLNGEYYDYVGSTVDGKLCLSNYRLCHQDNNGSNASITFF 160
           L+P +E + E +SL  P    L GE  +Y+G   D  + +SNYRL  +  +      +  
Sbjct: 10  LFPPKELIKEEESLQVPFT-VLQGEGVEYLGHANDAVIAISNYRLHIKFKD------SVI 62

Query: 161 NIPLGLIENVEIKEVHWLQIVCKDVTSCK 189
           N+PL ++E+VE +++  L IVCKD    K
Sbjct: 63  NVPLRMMESVECRDMFQLHIVCKD---SK 88

MTMR3 is a member of the myotubularin dual specificity protein phosphatase gene family. MTMR3 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. The protein can self-associate and also form heteromers with MTMR4. MTMR4, a member of the myotubularin dual specificity protein phosphatase gene family. MTMR4 binds to phosphoinositide lipids through its PH-GRAM domain, and can hydrolyze phosphatidylinositol(3)-phosphate and phosphatidylinositol(3,5)-biphosphate in vitro. The protein form heteromers with MTMR3. Both MTMR3 and MTMR4 contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, an active PTP domain, a SET-interaction domain, a coiled-coil region, and a C-terminal lipid-binding FYVE domain which binds phosphotidylinositol-3-phosphate. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 121

>gnl\|CDD\|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic domain motif	Back alignment and domain information

>gnl\|CDD\|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic domain, undefined specificity	Back alignment and domain information

>gnl\|CDD\|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

>gnl\|CDD\|217271 pfam02893, GRAM, GRAM domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		655
KOG4471\|consensus		717		100.0
PF06602		353	Myotub-related: Myotubularin-like phosphatase doma	100.0
KOG1089\|consensus		573		100.0
KOG1090\|consensus		1732		100.0
KOG4471\|consensus		717		99.93
KOG1089\|consensus		573		99.83
KOG1090\|consensus		1732		99.45
smart00404		105	PTPc_motif Protein tyrosine phosphatase, catalytic	96.57
smart00012		105	PTPc_DSPc Protein tyrosine phosphatase, catalytic	96.57
PF13350		164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	94.7
smart00195		138	DSPc Dual specificity phosphatase, catalytic domai	92.95
cd00127		139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	92.49
PF00782		133	DSPc: Dual specificity phosphatase, catalytic doma	90.49
PF03162		164	Y_phosphatase2: Tyrosine phosphatase family; Inter	89.64
COG2365		249	Protein tyrosine/serine phosphatase [Signal transd	88.56
PTZ00393		241	protein tyrosine phosphatase; Provisional	81.78
PTZ00242		166	protein tyrosine phosphatase; Provisional	81.13
smart00194		258	PTPc Protein tyrosine phosphatase, catalytic domai	80.49
cd00047		231	PTPc Protein tyrosine phosphatases (PTP) catalyze	80.19

>KOG4471\|consensus	Back alignment and domain information

Probab=100.00  E-value=3.6e-135  Score=1099.42  Aligned_cols=443  Identities=41%  Similarity=0.690  Sum_probs=412.0

Q ss_pred             cccCCCCccccCCCCCCcccCCCCCCCcccccccccc-------hhccccccceEeecccccccccccCCCCCCceeecc
Q psy4442          91 KVLGTMPGIMLYPLREPVYEHKSLVEPSIPKLNGEYY-------DYVGSTVDGKLCLSNYRLCHQDNNGSNASITFFNIP  163 (655)
Q Consensus        91 ~P~~svq~leLWp~~~p~~e~~~l~~pf~~eL~gE~~-------e~~~r~~d~~lalSnyrl~l~~~~~~~~~~~~~~vP  163 (655)
                      ..++.+++.+.+|...++++++++++|| ++|.||++       .|+| +++|+|+|||||||++.  ..+.+..+++||
T Consensus         7 ~s~~~~~~~~s~~~t~~~~~~~~~~~~~-~~L~GE~i~~~~y~c~f~G-~~~g~l~lsNyRl~fks--~~t~~~~~~~VP   82 (717)
T KOG4471|consen    7 SSNSFIQANDSFPRTSLDKEDENLQVPF-PLLPGESIIDEKYICPFLG-AVDGTLALSNYRLYFKS--KETDPPFVLDVP   82 (717)
T ss_pred             CcchhhhhhhccCchhcccccccccCcc-cccCCcccccceecccccc-cccceEEeeeeEEEEEe--ccCCCceeEeec
Confidence            3455567788889888999999999999 99999999       9999 99999999999999999  445566799999


Q ss_pred             ccceeeeeeee-------eeEEEEEecCCcccccCCCCCCCCCCCccceeeeecccCCCCCCCCCccccccccccccccc
Q psy4442         164 LGLIENVEIKE-------VHWLQIVCKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPSDRRGGGTEHELSSVSYRNVQS  236 (655)
Q Consensus       164 Lg~ie~~e~~d-------~~~l~i~ckd~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (655)
                      ||+||+||+++       .|+|+|+|||+|++               ||+|.            +.+||+-         
T Consensus        83 Lg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~l---------------R~~fk------------~~~q~r~---------  126 (717)
T KOG4471|consen   83 LGVIERVEKRGGATSGENSFGLEITCKDMRNL---------------RCAFK------------QEEQCRR---------  126 (717)
T ss_pred             hhhhhhhhhcCccccCCcceeEEEEeccccce---------------eeecC------------cccccHH---------
Confidence            99999999999       99999999999999               99999            9999982         


Q ss_pred             ccccCCCCCCCCCCCccccccccccccccccccccccccCCCCCCccccccccccccccccchhhHHHHHhhhccccccC
Q psy4442         237 VKTVPYPPCSYRDTSKAEWTTFKQDCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRG  316 (655)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (655)
                                       +|+                +||++.+.||+..+++|||         +|++|....++     
T Consensus       127 -----------------~~~----------------e~L~~~~~p~~~~~~LFaF---------~~~~~~~~ng~-----  159 (717)
T KOG4471|consen  127 -----------------DWF----------------ERLNRAAFPPAKSEDLFAF---------AYHAWFPVNGS-----  159 (717)
T ss_pred             -----------------HHH----------------HHHHHhcCCcccchhhhhc---------ccHhhcCCCCc-----
Confidence                             677                9999999999999999999         99999976433     


Q ss_pred             CchhhhhhhhhccCCcceeeecccCCCCCcCCh--HHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhH
Q psy4442         317 TRSKEVRLYLVYQGPFQCVRLTYRSVLPTGTRS--TSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGL  394 (655)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~  394 (655)
                       + +..|.                    ..|++  ..|+.|||++  ...||||.+|++|++|+|||..++||++|+|++
T Consensus       160 -e-~~~~~--------------------~l~~P~~~~E~~r~g~~--n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~e  215 (717)
T KOG4471|consen  160 -E-NGQHW--------------------KLYDPMFKNEYRRQGLP--NESWRISKINSNYKLCDSYPAKLVVPKSISDEE  215 (717)
T ss_pred             -c-ccccc--------------------cccChhhHhHHHhcCCC--hhheeeecccccccccccCccceEeccccCHHH
Confidence             0 11111                    13455  9999999998  569999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcceEEeeecCCCceEeeccCCcccCCCCCChHhHHHHHHHHHhCCCCCCCCccccccCCCcceeEeec
Q psy4442         395 LKSSADFRSNQRFPVVVWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPK  474 (655)
Q Consensus       395 L~~vA~FRs~gRfPvlsW~h~~nGAvL~RsSQP~vG~~g~Rs~eDE~lL~aI~~a~~~~~~s~~~~~~~~~~~~l~IvDa  474 (655)
                      |.++|.||+++|+||++|+||++||+|+|||||+||++|||+++||+||++|+++|..+          ...+|++|+||
T Consensus       216 L~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQPlVG~~g~Rn~~DEkll~~i~~a~A~~----------~e~~KL~I~DA  285 (717)
T KOG4471|consen  216 LLRVASFRSRCRLPVLSWRHPESGAVIARCSQPLVGWSGKRNKDDEKLLQAIADANAQD----------GERRKLLIVDA  285 (717)
T ss_pred             HHHHhhhhhcCccceEEEEcCCCCceEEecCCcccchhcccccchHHHHHHHHHhcccc----------cccceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999998764          12568999999


Q ss_pred             -------c-cccCCC-CCC------CccccCCCChHHHHHHHHHHHhcccCCCCCchhhhhcccCCchHHHHHHHHHHHH
Q psy4442         475 -------A-KKEGIG-ESQ------PFRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAV  539 (655)
Q Consensus       475 -------a-ra~G~G-E~~------p~~f~~i~nIh~iR~Sf~~~L~~lc~~~~~~~~wls~Le~s~WL~~V~~lL~~a~  539 (655)
                             | +||||| |++      ++.|+||.|||+||+|| ++++++|.+.+++++|++.||+|+||+||+.+|.+|+
T Consensus       286 Rp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~mR~s~-~~~k~~~~~~~d~s~wlS~Le~T~WL~Hi~~lLaga~  364 (717)
T KOG4471|consen  286 RPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVMRESL-RKLKEICYPSPDESNWLSALESTHWLEHISSLLAGAV  364 (717)
T ss_pred             ccchhhhhccccCCCccChhccccceEEEeecchhHHHHHHH-HhHHHhhcCCCCchhHHHhhccchHHHHHHHHHHHHH
Confidence                   4 999999 987      39999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCcEEEEEcCCCCCcchhHHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCC---CCCCCCCchh
Q psy4442         540 NLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN---DKSSERSPVF  616 (655)
Q Consensus       540 ~ia~~l~~~g~sVLVhcsdGwDrT~qisSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~---~~~~e~sPvF  616 (655)
                      .||+.++.+++|||||||||||||+||+||||||||||||||+||++|||||||+|||||++|+||+   +..+++||||
T Consensus       365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVF  444 (717)
T KOG4471|consen  365 RIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVF  444 (717)
T ss_pred             HHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999   5678999999


Q ss_pred             hHHHHHHHHHHhhCCCCccCCccchHHHHHhhccCCCCC
Q psy4442         617 LQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS  655 (655)
Q Consensus       617 lqFLDCV~QL~~QfP~aFEFne~fL~~L~~h~yS~~FGt  655 (655)
                      ||||||||||++|||++|||||.||+.|++|+|||+|||
T Consensus       445 LQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGT  483 (717)
T KOG4471|consen  445 LQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGT  483 (717)
T ss_pred             HHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999998

>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO	Back alignment and domain information

>KOG1089\|consensus	Back alignment and domain information

>KOG1090\|consensus	Back alignment and domain information

>KOG4471\|consensus	Back alignment and domain information

>KOG1089\|consensus	Back alignment and domain information

>KOG1090\|consensus	Back alignment and domain information

>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif	Back alignment and domain information

>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity	Back alignment and domain information

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B	Back alignment and domain information

>smart00195 DSPc Dual specificity phosphatase, catalytic domain	Back alignment and domain information

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases	Back alignment and domain information

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00393 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PTZ00242 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain	Back alignment and domain information

>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		655
1lw3_A		657	Crystal Structure Of Myotubularin-Related Protein 2		1e-59
1zsq_A		528	Crystal Structure Of Mtmr2 In Complex With Phosphat		3e-59
2yf0_A		512	Human Myotubularin Related Protein 6 (Mtmr6) Length		6e-52

>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2 Complexed With Phosphate Length = 657

Back alignment and structure

Iteration: 1

Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/298 (40%), Positives = 169/298 (56%), Gaps = 10/298 (3%) Query: 365 WRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS 424 WR N+ YELC+TYP ++VP+ I D LK A FRS R PV+ W H ++ A I R Sbjct: 228 WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRC 287 Query: 425 SQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPKAKKEGIGESQ 484 SQP VGV G R KEDE L+ I + + +S K F + + + KAK G Sbjct: 288 SQPMVGVSGKRSKEDEKYLQAIMDSNA---QSHKIFIFDARPSVNAVANKAKGGGYESED 344 Query: 485 PFRERTLPGKD----EIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVN 540 ++ L D + + + + T W ++ T WL+++ L+L A+ Sbjct: 345 AYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALR 404 Query: 541 LAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFD 600 +A +E SV+VH SDGWDRT QL SLA ++LD YYRT++GF+VLVE+EWL FGH+F Sbjct: 405 IADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQ 464 Query: 601 DRCGRNDKS---SERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEFQFNSMFLGS 655 R G DK+ ++RSPVFLQ++DCV+Q+ QFPT F+FN FL S G+ Sbjct: 465 LRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGT 522

PyMOL of 1lw3

>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With Phosphatidylinositol 3-Phosphate Length = 528

Back alignment and structure

>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6) Length = 512

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		655
1zsq_A		528	Myotubularin-related protein 2; protein-phospholip	1e-78
1zsq_A		528	Myotubularin-related protein 2; protein-phospholip	1e-08
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	5e-77
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	5e-09
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	7e-04
2yf0_A		512	Myotubularin-related protein 6; hydrolase; 2.65A {	2e-69
2yf0_A		512	Myotubularin-related protein 6; hydrolase; 2.65A {	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528	Back alignment and structure

 Score =  259 bits (661), Expect = 1e-78
 Identities = 119/299 (39%), Positives = 164/299 (54%), Gaps = 14/299 (4%)

Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
            E+ R         WR    N+ YELC+TYP  ++VP+ I D  LK  A FRS  R PV+
Sbjct: 144 LEYRRQGIPNES--WRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVL 201

Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
            W H ++ A I R SQP VGV G R KEDE  L+ I  + +   +      R      + 
Sbjct: 202 SWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARP---SVNA 258

Query: 471 IVPKAKKEGIGESQPFRE-----RTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
           +  KAK  G      ++        +     +R    K  +         T W   ++ T
Sbjct: 259 VANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPN-IEETHWLSNLEST 317

Query: 526 SWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQ 585
            WL+++ L+L  A+ +A  +E    SV+VH SDGWDRT QL SLA ++LD YYRT++GF+
Sbjct: 318 HWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFE 377

Query: 586 VLVEREWLEFGHKFDDRCG---RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL 641
           VLVE+EWL FGH+F  R G   +N   ++RSPVFLQ++DCV+Q+  QFPT F+FN  FL
Sbjct: 378 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFL 436

PyMOL of 1zsq

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528	Back alignment and structure

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657	Back alignment and structure

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657	Back alignment and structure

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Length = 657	Back alignment and structure

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512	Back alignment and structure

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Length = 512	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		655
1zsq_A		528	Myotubularin-related protein 2; protein-phospholip	100.0
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	100.0
2yf0_A		512	Myotubularin-related protein 6; hydrolase; 2.65A {	100.0
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	99.91
1zsq_A		528	Myotubularin-related protein 2; protein-phospholip	99.88
2yf0_A		512	Myotubularin-related protein 6; hydrolase; 2.65A {	99.86
3s4o_A		167	Protein tyrosine phosphatase-like protein; structu	93.39
2img_A		151	Dual specificity protein phosphatase 23; DUSP23, V	93.34
3rgo_A		157	Protein-tyrosine phosphatase mitochondrial 1; phos	92.39
4erc_A		150	Dual specificity protein phosphatase 23; alpha bet	92.14
1rxd_A		159	Protein tyrosine phosphatase type IVA, member 1; p	91.81
3ezz_A		144	Dual specificity protein phosphatase 4; alpha/beta	91.05
1xri_A		151	AT1G05000; structural genomics, protein structure	90.62
1zzw_A		149	Dual specificity protein phosphatase 10; MKP, PTP,	90.57
1ywf_A		296	Phosphotyrosine protein phosphatase PTPB; four str	89.77
2hxp_A		155	Dual specificity protein phosphatase 9; human phos	89.74
3rz2_A		189	Protein tyrosine phosphatase type IVA 1; tyrosine	89.73
2r0b_A		154	Serine/threonine/tyrosine-interacting protein; str	89.7
2q05_A		195	Late protein H1, dual specificity protein phosphat	89.42
1wrm_A		165	Dual specificity phosphatase 22; DSP, JNK, hydrola	88.91
1fpz_A		212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	88.86
2nt2_A		145	Protein phosphatase slingshot homolog 2; alpha/bet	88.83
1yz4_A		160	DUSP15, dual specificity phosphatase-like 15 isofo	88.65
3s4e_A		144	Dual specificity protein phosphatase 19; PTP, prot	88.25
2hcm_A		164	Dual specificity protein phosphatase; structural g	87.82
3cm3_A		176	Late protein H1, dual specificity protein phosphat	87.77
3emu_A		161	Leucine rich repeat and phosphatase domain contain	87.76
2e0t_A		151	Dual specificity phosphatase 26; conserved hypothe	87.6
1yn9_A		169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	87.55
2oud_A		177	Dual specificity protein phosphatase 10; A central	87.54
3f81_A		183	Dual specificity protein phosphatase 3; hydrolase,	87.08
2wgp_A		190	Dual specificity protein phosphatase 14; MKP6, DUS	86.3
2esb_A		188	Dual specificity protein phosphatase 18; alpha/bet	86.24
2gjt_A		295	Receptor-type tyrosine-protein phosphatase PTPro;	84.86
2p6x_A		309	Tyrosine-protein phosphatase non-receptor type 22;	84.73
3s3e_A		307	Tyrosine-protein phosphatase 10D; differentiation,	84.67
2i75_A		320	Tyrosine-protein phosphatase non-receptor type 4;	83.78
2hc1_A		291	Receptor-type tyrosine-protein phosphatase beta; p	83.45
4grz_A		288	Tyrosine-protein phosphatase non-receptor type 6;	82.65
1fpr_A		284	Protein-tyrosine phosphatase 1C; protein tyrosine	82.13
2i1y_A		301	Receptor-type tyrosine-protein phosphatase; recept	81.53
3b7o_A		316	Tyrosine-protein phosphatase non-receptor type 11;	81.21
1yfo_A		302	D1, receptor protein tyrosine phosphatase alpha; h	80.67
2ooq_A		286	Receptor-type tyrosine-protein phosphatase T; prot	80.24

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*	Back alignment and structure

Probab=100.00  E-value=9.3e-112  Score=938.29  Aligned_cols=406  Identities=37%  Similarity=0.628  Sum_probs=356.7

Q ss_pred             cccccccch-------hc---cccccceEeecccccccccccCCCCCCceeeccccceeeeeee--------eeeEEEEE
Q psy4442         120 PKLNGEYYD-------YV---GSTVDGKLCLSNYRLCHQDNNGSNASITFFNIPLGLIENVEIK--------EVHWLQIV  181 (655)
Q Consensus       120 ~eL~gE~~e-------~~---~r~~d~~lalSnyrl~l~~~~~~~~~~~~~~vPLg~ie~~e~~--------d~~~l~i~  181 (655)
                      +.|+||.++       ++   ....+|+|.++||||.+.+..  .++...++|||+.|++||+.        +.+.|.|.
T Consensus         8 ~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~--~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~   85 (528)
T 1zsq_A            8 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSME--RDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV   85 (528)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESS--SSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEE
T ss_pred             ccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccC--CCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEE
Confidence            789999877       32   235779999999999999833  33456799999999999963        46899999


Q ss_pred             ecCCcccccCCCCCCCCCCCccceeeeecccCCCCCCCCCc-ccccccccccccccccccCCCCCCCCCCCccccccccc
Q psy4442         182 CKDVTSCKKGSGLGHVKPRYSSRSHFTVTLMEPSDRRGGGT-EHELSSVSYRNVQSVKTVPYPPCSYRDTSKAEWTTFKQ  260 (655)
Q Consensus       182 ckd~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (655)
                      |||.|++               |+.|.            .. ++|.                           ++.    
T Consensus        86 CKDfr~~---------------~f~f~------------~~~~~~~---------------------------~v~----  107 (528)
T 1zsq_A           86 CKDIRNL---------------RFAHK------------PEGRTRR---------------------------SIF----  107 (528)
T ss_dssp             ETTTEEE---------------EEECC------------GGGCCHH---------------------------HHH----
T ss_pred             ccCCeEE---------------EEEec------------CchHHHH---------------------------HHH----
Confidence            9999999               88886            22 3454                           222    


Q ss_pred             cccccccccccccccCCCCCCccccccccccccccccchhhHHHHHhhhccccccCCchhhhhhhhhccCCcceeeeccc
Q psy4442         261 DCTTRILQGEGSKRGKNEPYPRVLYRDTFQSEGHVQKRVTTYLILRMLVQGTFKRGTRSKEVRLYLVYQGPFQCVRLTYR  340 (655)
Q Consensus       261 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (655)
                                  ..|.+.+.|.+..+++|||         .|...       +      .+ .+|               
T Consensus       108 ------------~~L~~~~~p~~~~~~lfaF---------~y~~~-------~------~~-~gw---------------  137 (528)
T 1zsq_A          108 ------------ENLMKYAFPVSNNLPLFAF---------EYKEV-------F------PE-NGW---------------  137 (528)
T ss_dssp             ------------HHHHHHSCTTTTTCCCGGG---------TCCCC-------C------SS-CGG---------------
T ss_pred             ------------HHHHHHhcCCccccceeee---------ecccc-------c------cC-CCc---------------
Confidence                        3344444566655679999         44221       0      00 122               


Q ss_pred             CCCCCcCChHHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhHHHHHHhhhcCCCcceEEeeecCCCce
Q psy4442         341 SVLPTGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAV  420 (655)
Q Consensus       341 ~~~~~~~d~~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~L~~vA~FRs~gRfPvlsW~h~~nGAv  420 (655)
                          +.||+..||+|||++  ...||||.+|++|++|+|||+.+|||++++|++|.++|+||++||||||||+|++|||+
T Consensus       138 ----~~y~~~~E~~R~g~~--~~~WRis~vN~~y~~c~tYP~~lvVP~~i~D~~l~~~a~frs~~R~Pvl~w~h~~~~a~  211 (528)
T 1zsq_A          138 ----KLYDPLLEYRRQGIP--NESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQAT  211 (528)
T ss_dssp             ----GSCCHHHHHHHTTCS--CSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCE
T ss_pred             ----eecCHHHHHHHcCCC--cccEEEEEecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcE
Confidence                368999999999997  67899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCcccCCCCCChHhHHHHHHHHHhCCCCCCCCccccccCCCcceeEeec-------c-cccCCC-CCC------C
Q psy4442         421 IARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPK-------A-KKEGIG-ESQ------P  485 (655)
Q Consensus       421 L~RsSQP~vG~~g~Rs~eDE~lL~aI~~a~~~~~~s~~~~~~~~~~~~l~IvDa-------a-ra~G~G-E~~------p  485 (655)
                      |+|||||++|+.|+||.+||++|++|.+++.             +.++++|+|+       | +++||| |+.      .
T Consensus       212 l~RssqP~~g~~~~r~~~DE~~l~~i~~~~~-------------~~~~~~i~D~rp~~~A~an~a~G~G~E~~~~Y~~~~  278 (528)
T 1zsq_A          212 ITRCSQPMVGVSGKRSKEDEKYLQAIMDSNA-------------QSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAE  278 (528)
T ss_dssp             EEEECCBCCTTTTCCCHHHHHHHHHHHHHSS-------------SCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEE
T ss_pred             EEEcCCcCcccccCCCHHHHHHHHHHHHhCc-------------ccCccEEEccCchhhHHHhhhcCCcccCcccccCce
Confidence            9999999999999999999999999998753             2457899997       3 899999 866      3


Q ss_pred             ccccCCCChHHHHHHHHHHHhcccCCCCCchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchh
Q psy4442         486 FRERTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQ  565 (655)
Q Consensus       486 ~~f~~i~nIh~iR~Sf~~~L~~lc~~~~~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~q  565 (655)
                      ++|++|+|||+||+|| +||+++|.+..++.+|++.||+|+||+||+.+|++|+.||++|+.++.|||||||||||||+|
T Consensus       279 ~~f~~i~nIh~~r~S~-~kL~~~~~~~~~~~~wls~Le~s~WL~~i~~iL~~a~~ia~~l~~~~~sVLvhcsdGwDrT~q  357 (528)
T 1zsq_A          279 LVFLDIHNIHVMRESL-RKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQ  357 (528)
T ss_dssp             EEECCCCCHHHHHHHH-HHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHH
T ss_pred             EEEcCCccHHHHHHHH-HHHHHHhCCCCcchhHHHHhHhcccHHHHHHHHHHHHHHHHHHHcCCceEEEECCCCccchHH
Confidence            8999999999999999 999999987778889999999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCCC---CCCCCCchhhHHHHHHHHHHhhCCCCccCCccchH
Q psy4442         566 LVSLAEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRND---KSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLF  642 (655)
Q Consensus       566 isSLaqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~~---~~~e~sPvFlqFLDCV~QL~~QfP~aFEFne~fL~  642 (655)
                      ||||||||||||||||+||++|||||||+|||||++||||++   .++|+||||+|||||||||++|||++|||||.||+
T Consensus       358 l~SLaqllLDPyyRTi~GF~~LIEKEWlsfGH~F~~R~gh~~~~~~~~e~SPvFlqFLDcV~Ql~~QfP~~FEFne~~L~  437 (528)
T 1zsq_A          358 LTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI  437 (528)
T ss_dssp             HHHHHHHHHCGGGGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHH
T ss_pred             HHHHHHHHcCccccHHHHHHHHHHhHHhhcCCChhhhcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccccCHHHHH
Confidence            999999999999999999999999999999999999999983   35789999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCC
Q psy4442         643 PTEFQFNSMFLGS  655 (655)
Q Consensus       643 ~L~~h~yS~~FGt  655 (655)
                      +|+||+|||+|||
T Consensus       438 ~L~~h~ys~~fgT  450 (528)
T 1zsq_A          438 TILDHLYSCLFGT  450 (528)
T ss_dssp             HHHHHHHHCSSST
T ss_pred             HHHHHhcccccCC
Confidence            9999999999998

PyMOL of 1zsq

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A	Back alignment and structure

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}	Back alignment and structure

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A	Back alignment and structure

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*	Back alignment and structure

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}	Back alignment and structure

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}	Back alignment and structure

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}	Back alignment and structure

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*	Back alignment and structure

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A	Back alignment and structure

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A	Back alignment and structure

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A	Back alignment and structure

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A	Back alignment and structure

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}	Back alignment and structure

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*	Back alignment and structure

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A	Back alignment and structure

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A	Back alignment and structure

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}	Back alignment and structure

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}	Back alignment and structure

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}	Back alignment and structure

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*	Back alignment and structure

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}	Back alignment and structure

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}	Back alignment and structure

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}	Back alignment and structure

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}	Back alignment and structure

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A	Back alignment and structure

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}	Back alignment and structure

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}	Back alignment and structure

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}	Back alignment and structure

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}	Back alignment and structure

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*	Back alignment and structure

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}	Back alignment and structure

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}	Back alignment and structure

>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine phosphatase, glepp1, PTPU2, structural genom structural genomics consortium, SGC; 2.15A {Homo sapiens} PDB: 2g59_A 2pi7_A	Back alignment and structure

>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine phosphatase, lymphoid phosphatase, PEP, LYP, struct genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A* 2qcj_A* 3olr_A* 3omh_A*	Back alignment and structure

>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis, signal transduction, developm protein, hydrolase; 2.40A {Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*	Back alignment and structure

>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP, tyrosine phosphatase, MEG-1, structural genomics structural genomics consortium, SGC; 2.45A {Homo sapiens}	Back alignment and structure

>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine phosphatase, WPD-loop, sulfamic acid, inhibitor, drug design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A 2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A* 2i4h_A* 2i5x_A* 2ahs_A	Back alignment and structure

>4grz_A Tyrosine-protein phosphatase non-receptor type 6; phosphatase domain, hydrolase; 1.37A {Homo sapiens} PDB: 4gry_A 4gs0_A* 1gwz_A 1fpr_A*	Back alignment and structure

>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase, substrate specificity, residue shift, signaling protein; HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB: 1gwz_A	Back alignment and structure

>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein tyrosine phosphatase precursor, phosph structural genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A	Back alignment and structure

>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11, tyrosine phosphatase, structural genomics, STR genomics consortium, SGC, deafness; 1.60A {Homo sapiens} PDB: 3jrl_A* 3mow_A* 3o5x_A*	Back alignment and structure

>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal transduction, glycoprotein, phosphorylation, signal; 2.25A {Mus musculus} SCOP: c.45.1.2	Back alignment and structure

>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine phosphatase, human, structural GE structural genomics consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo sapiens} PDB: 1rpm_A 2c7s_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		655
d1zsqa2		387	c.45.1.3 (A:199-585) Myotubularin-related protein	1e-93
d1zsqa2		387	c.45.1.3 (A:199-585) Myotubularin-related protein	5e-11
d1zsqa1		125	b.55.1.8 (A:74-198) Myotubularin-related protein 2	2e-04

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  292 bits (748), Expect = 1e-93
 Identities = 126/319 (39%), Positives = 172/319 (53%), Gaps = 26/319 (8%)

Query: 351 SEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVV 410
            E+ R         WR    N+ YELC+TYP  ++VP+ I D  LK  A FRS  R PV+
Sbjct: 15  LEYRRQGIPN--ESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVL 72

Query: 411 VWRHQKNGAVIARSSQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDL 470
            W H ++ A I R SQP VGV G R KEDE  L+ I  + +   +S K F  +     + 
Sbjct: 73  SWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNA---QSHKIFIFDARPSVNA 129

Query: 471 IVPKAKKEGIGESQPFRE-----RTLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGT 525
           +  KAK  G      ++        +     +R    K  +         T W   ++ T
Sbjct: 130 VANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVY-PNIEETHWLSNLEST 188

Query: 526 SWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSLAEILLDPYYRTVKGFQ 585
            WL+++ L+L  A+ +A  +E    SV+VH SDGWDRT QL SLA ++LD YYRT++GF+
Sbjct: 189 HWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFE 248

Query: 586 VLVEREWLEFGHKFDDRCG---RNDKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFL- 641
           VLVE+EWL FGH+F  R G   +N   ++RSPVFLQ++DCV+Q+  QFPT F+FN  FL 
Sbjct: 249 VLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLI 308

Query: 642 ----------FPTEFQFNS 650
                     F T F  NS
Sbjct: 309 TILDHLYSCLFGT-FLCNS 326

PyMOL of d1zsqa2

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387	Back information, alignment and structure

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		655
d1zsqa2		387	Myotubularin-related protein 2, C-terminal domain	100.0
d1zsqa2		387	Myotubularin-related protein 2, C-terminal domain	99.85
d1zsqa1		125	Myotubularin-related protein 2, N-terminal domain	99.18
d1xria_		151	Putative phosphatase At1g05000 {Thale cress (Arabi	92.95
d1ywfa1		272	Phosphotyrosine protein phosphatase PtpB {Mycobact	92.77
d1rxda_		152	Protein tyrosine phosphatase type IVa {Human (Homo	88.07
d1mkpa_		144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	87.91
d1m3ga_		145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	87.13
d1fpza_		176	Kinase associated phosphatase (kap) {Human (Homo s	86.72
d1ohea2		182	Proline directed phosphatase CDC14b2 {Human (Homo	85.62
d1lara2		249	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	82.47
d1rpma_		278	Tyrosine phosphatase {Human (Homo sapiens), mu [Ta	81.66
d2shpa1		307	Tyrosine phosphatase {Human (Homo sapiens), shp-2	81.61
d1yfoa_		288	Tyrosine phosphatase {Mouse (Mus musculus) [TaxId:	80.84
d1d5ra2		174	Phoshphoinositide phosphatase Pten (Pten tumor sup	80.53

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-97  Score=797.48  Aligned_cols=295  Identities=41%  Similarity=0.727  Sum_probs=280.5

Q ss_pred             CcCChHHHHhHcCCCCCCCCeeEeeccCCcccccCCCCceEecCcCChhHHHHHHhhhcCCCcceEEeeecCCCceEeec
Q psy4442         345 TGTRSTSEWERMKFDEAPVRWRQCSANQNYELCETYPKYVIVPSGIDDGLLKSSADFRSNQRFPVVVWRHQKNGAVIARS  424 (655)
Q Consensus       345 ~~~d~~~Ef~RlG~~~~~~~WRVS~vN~~Y~lC~SYP~~LVVP~sIsD~~L~~vA~FRs~gRfPvlsW~h~~nGAvL~Rs  424 (655)
                      ..||+.+||+|||++  ...||||.+|++|++|+|||+.+|||++++|++|.++|+||++||||||||+|+.|||+|+||
T Consensus         9 ~~yd~~~E~~RlGl~--~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~a~L~Rs   86 (387)
T d1zsqa2           9 KLYDPLLEYRRQGIP--NESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRC   86 (387)
T ss_dssp             GSCCHHHHHHHTTCS--CSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEE
T ss_pred             hhcCHHHHHHhcCCC--CCCEEEeeecCCCeecCCCCCceEEcCcCCHHHHHHHHHhhcCCCceEEEEEcCCCCceEEee
Confidence            368999999999996  678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCCCChHhHHHHHHHHHhCCCCCCCCccccccCCCcceeEeec-------c-cccCCC-CCC------Ccccc
Q psy4442         425 SQPQVGVLGWRKKEDEMLLEQITKAGSGGDESSKRFDRENWNRYDLIVPK-------A-KKEGIG-ESQ------PFRER  489 (655)
Q Consensus       425 SQP~vG~~g~Rs~eDE~lL~aI~~a~~~~~~s~~~~~~~~~~~~l~IvDa-------a-ra~G~G-E~~------p~~f~  489 (655)
                      |||++|..+.||.|||++|++|.++..             ..++++|+|+       | +++||| |+.      .++|+
T Consensus        87 sqP~~g~~~~r~~ede~~l~~i~~~~~-------------~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~  153 (387)
T d1zsqa2          87 SQPMVGVSGKRSKEDEKYLQAIMDSNA-------------QSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFL  153 (387)
T ss_dssp             CCBCCTTTTCCCHHHHHHHHHHHHHSS-------------SCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEEC
T ss_pred             CCcCCCccCCCcHHHHHHHHHHHHhCC-------------CcCcceeecCCcchhHHHhhhcCCCccchhcccCceeeee
Confidence            999999999999999999999988654             3456899998       3 889999 875      28999


Q ss_pred             CCCChHHHHHHHHHHHhcccCCCCCchhhhhcccCCchHHHHHHHHHHHHHHHHHhhhcCcEEEEEcCCCCCcchhHHHH
Q psy4442         490 TLPGKDEIRSGWWKAVDGTSWRAPSNTSWWKAVDGTSWLQNMHLLLVSAVNLAATIELESRSVLVHCSDGWDRTPQLVSL  569 (655)
Q Consensus       490 ~i~nIh~iR~Sf~~~L~~lc~~~~~~~~wls~Le~s~WL~~V~~lL~~a~~ia~~l~~~g~sVLVhcsdGwDrT~qisSL  569 (655)
                      +|+|||.||+|| +||+++|....++.+|++.||+|+||+||+.+|++|+.||++|+.++++|||||+||||||+||+||
T Consensus       154 ~i~nih~vr~s~-~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL  232 (387)
T d1zsqa2         154 DIHNIHVMRESL-RKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSL  232 (387)
T ss_dssp             CCCCHHHHHHHH-HHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHH
T ss_pred             cccchHHHHHHH-HHHHHHhcCCCchhhHHhhccccchHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCchhHHHHHH
Confidence            999999999999 8899999887788999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHhCccccchhhHHHHHHhHhhhcCCCcccccCCC---CCCCCCCchhhHHHHHHHHHHhhCCCCccCCccchHHHHH
Q psy4442         570 AEILLDPYYRTVKGFQVLVEREWLEFGHKFDDRCGRN---DKSSERSPVFLQWLDCVYQLLTQFPTEFQFNSMFLFPTEF  646 (655)
Q Consensus       570 aqLllDPyYRTi~GF~~LIeKEWlsfGH~F~~R~gh~---~~~~e~sPvFlqFLDCV~QL~~QfP~aFEFne~fL~~L~~  646 (655)
                      ||||||||||||+||++||||||++|||||.+||||+   ...+|.||||+|||||||||++|||++|||||.||++|+|
T Consensus       233 ~ql~lDpyyRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~  312 (387)
T d1zsqa2         233 AMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILD  312 (387)
T ss_dssp             HHHHHCGGGGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHH
T ss_pred             HHHHhCcccccHHHHHHHHHHHHHhcCCchhhhhcCCCCCcccCCCCCchHHHHHHHHHHHHhCCcccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999997   4567899999999999999999999999999999999999


Q ss_pred             hhccCCCCC
Q psy4442         647 QFNSMFLGS  655 (655)
Q Consensus       647 h~yS~~FGt  655 (655)
                      |+|||+|||
T Consensus       313 h~~s~~fgt  321 (387)
T d1zsqa2         313 HLYSCLFGT  321 (387)
T ss_dssp             HHHHCSSST
T ss_pred             Hhccccccc
Confidence            999999998

PyMOL of d1zsqa2

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}	Back information, alignment and structure

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}	Back information, alignment and structure

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}	Back information, alignment and structure

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]}	Back information, alignment and structure

>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]}	Back information, alignment and structure

>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure