Psyllid ID: psy444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mgllenlkfkeWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDrlnheiihkDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
mgllenlkfkewhTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKtartkdqelrdlrqqtqqsvtkantcEQHLEKIKKEFKELQEKYqrdlnqktetirsltnknlelkvqyeeeidnrdtrikeltsdtseidkivsrkdaeieklskeneklsmdlVFKENQEVTelmkevdkkdNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNElverlnsveprievltkdiqikteKLHKLAEeheeliqtrrnekkleldEMREEIKRleevlkeneceraglltkekrkdeeIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESaekiklrdseldkkHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTeklhklaeeheelIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
*****NLKFKEWHTKISEAELLVKQIEYKNNQLLEF********************************************************************************************************************************************************KDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIH*********************************************RIEVLTKDIQIK********************************************************************GKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMK******************************************************ENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGL***
**L*ENL************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LILGL***
MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTK*******************TCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
*GLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MGLLENLKFKEWHTKISEAELLVKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTQQSVTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSEIDKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVTELMKEVDKKDNYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEIIHKDDEIRQNASKxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNSVEPRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDSELDKKHEVxxxxxxxxxxxxxxxxxxxxxLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
145497979 5605 hypothetical protein [Paramecium tetraur 0.909 0.080 0.184 7e-15
157869463 2046 hypothetical protein LMJF_22_1320 [Leish 0.898 0.217 0.172 5e-07
154413468 3369 viral A-type inclusion protein [Trichomo 0.583 0.085 0.294 0.0006
>gi|145497979|ref|XP_001434978.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402106|emb|CAK67581.1| unnamed protein product [Paramecium tetraurelia] Back     alignment and taxonomy information
 Score = 88.6 bits (218), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 215/471 (45%), Gaps = 21/471 (4%)

Query: 6    NLKFKEWHTKISEAEL---LVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKD 62
            + K K   T + E+ L   +V + +  N+Q  E EQ  +E +KQ +  +  + +  +  +
Sbjct: 1061 SFKMKNEITDVVESYLKGNVVIKPQISNSQKKEQEQSTQE-IKQVNSDIKVVNQEVKQVN 1119

Query: 63   QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQ------RDLNQKTETIRSLTN 116
            QE++   Q+ +Q+  +  +  Q + +   E +++ ++ +      +  NQ+T+ +   T 
Sbjct: 1120 QEIKQTNQEEKQTTQETKSVNQEIRQNNSETQQINQETKSVISETKSTNQETQQVNQETK 1179

Query: 117  KNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKEN 176
            +  +   Q  +E    +   K+   +T E+ +   + + EI++ ++EN++++ + V +E 
Sbjct: 1180 QTNQEVKQTTQETKQINQETKQTNQETREVSQETKQVNQEIKQTTQENKQVNQE-VKQET 1238

Query: 177  QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDE 236
            Q+V +  K+V ++        ++    VK   +  KQV     N+E+ +   E    +++
Sbjct: 1239 QQVNQQTKQVSQETQQTNQETRQTTQEVKQTNQESKQV-----NQEVKQTTQETKQTNEQ 1293

Query: 237  IRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLH-- 294
             +Q   +IKQ   +I    +  K++ ++  ++ ++  +  P      K+    T  L   
Sbjct: 1294 TKQTNEQIKQSNEQIKQATQETKQITQEIKQVDQKQQTAVPYDHDTIKEGYSDTPGLKPG 1353

Query: 295  KLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENE--CERAGLLTKEKRKDEEIKR 352
            K+ +  ++  Q + N+K   LD   E+ K +   +++ E   E A  +  + + D+ +  
Sbjct: 1354 KIDQSEQQECQEQTNDKDTPLDRPIEK-KSVSRTVQQQEQTSEEAQAIIIDSKVDQSLSN 1412

Query: 353  LKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLR 412
             ++     K + Q+ +   N  +E +Q    V       + +  + +     + ++ +  
Sbjct: 1413 SEQNQEIIKKVDQKVESSQNNAQETEQVTSKVTETTSQTNSITQQTNDQSSITNKQTQQT 1472

Query: 413  DSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQR 463
            +  + + ++ I E   S+  NN+ +Q+  E   +NN  I E +  +Q++ +
Sbjct: 1473 NETIQQNNKTIQETNESISQNNKTVQETNETTQQNNKTIQETNETVQQVNK 1523

Source: Paramecium tetraurelia strain d4-2

Species: Paramecium tetraurelia

Genus: Paramecium

Family: Parameciidae

Order: Peniculida

Class: Oligohymenophorea

Phylum:

Superkingdom: Eukaryota
>gi|157869463|ref|XP_001683283.1| hypothetical protein LMJF_22_1320 [Leishmania major strain Friedlin] gi|68224167|emb|CAJ04669.1| hypothetical protein LMJF_22_1320 [Leishmania major strain Friedlin] Back     alignment and taxonomy information
>gi|154413468|ref|XP_001579764.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121913974|gb|EAY18778.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
ZFIN|ZDB-GENE-050208-317 1422 tnks1bp1 "tankyrase 1 binding 0.848 0.295 0.267 1.3e-25
UNIPROTKB|F1MN61 1188 Bt.111284 "Uncharacterized pro 0.925 0.385 0.246 1.2e-23
SGD|S000002216 1790 USO1 "Protein involved in the 0.915 0.253 0.245 1.3e-23
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.945 0.313 0.229 6.4e-23
DICTYBASE|DDB_G0271058 1528 vilC "villin-like protein C" [ 0.864 0.280 0.269 2.5e-21
DICTYBASE|DDB_G02869851024 zipA "zipper-like domain-conta 0.923 0.446 0.202 2.5e-20
UNIPROTKB|G3MZG5 2683 CENPE "Uncharacterized protein 0.913 0.168 0.251 5.2e-20
DICTYBASE|DDB_G0287291 1738 abpD "interaptin" [Dictyosteli 0.872 0.248 0.226 1.4e-19
CGD|CAL0001468 895 SYS3 [Candida albicans (taxid: 0.911 0.503 0.224 1.6e-19
UNIPROTKB|Q59UF5 895 SYS3 "Potential GRIP domain Go 0.911 0.503 0.224 1.6e-19
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 320 (117.7 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 124/464 (26%), Positives = 235/464 (50%)

Query:    20 ELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQ-QTQQSVTK 78
             E L K+ E +  + +E E+ LR+  + + ++  E  K  +  ++E + +++ + Q+   +
Sbjct:   473 ERLKKEREMEERKRIE-EERLRQEERLRQEREKERVKKEKEMEEERQRVQELERQKEEER 531

Query:    79 ANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLEL-KVQYEEEIDNRDTRIK 137
                 E+ +E+I+KE KE++E+ +R    + +       K  E+ +++ E+E++    RI+
Sbjct:   532 RRKEEEEMERIRKE-KEIEEERRRIQELERQMEEERLRKEQEMERIRKEKEMEEERRRIQ 590

Query:   138 ELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDK--KDNYIET 195
             EL     E +++  RK+ E+E++ KE E   M+   +  QE+ E  KE D+  K+  I  
Sbjct:   591 ELERQMEE-ERL--RKEQEMERIRKEKE---MEEERRRIQEL-ERQKEEDRLRKEREIAR 643

Query:   196 LLKENEANV--KLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIAS 253
             L KE E     +  +ELE+Q  E  + KE +    E I K+ EI +   +I++L  E   
Sbjct:   644 LKKEKEMEEERRRIQELERQKEEERLRKEQEI---ERIKKEKEIEEKRQRIQEL--ERQK 698

Query:   254 KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTXXXXXXXXXXXXXIQTRRNEKKL 313
             +EE ++K      E+ ER+   E  IE   + ++I+               +  R +K+ 
Sbjct:   699 EEERLRK----EREM-ERIRK-EKEIE--EERLRIQELERQKEEERLRKEQEMERIKKEK 750

Query:   314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE--IGKYKMLVQERDQLA 371
             E++E R  I++LE   +E    +   + +E+++ ++++R KEE  I K K L +ER ++ 
Sbjct:   751 EMEEERRRIQKLERQKEEERLRKEREMEEERQRIQQLERQKEEERIRKEKELEEERRRIQ 810

Query:   372 NM-LEEYKQNAKDVVYYEDMKDKLEVELDKLRME---SAEKIKLRDSELDKKHEVIA-EM 426
                 +  ++  K     E M+ + E ++++LR E     E+ K+++ E  K+ E +  E 
Sbjct:   811 EFERQREEERLKKEREMERMRKEKEEQMERLRKERDLEEERRKIQELERQKEEERLRKER 870

Query:   427 KLS-------MEANNRRIQDLEEQLAENNAWINEQDLKIQEIQR 463
             ++        ME   RRIQDLE Q  E      E+++K +E QR
Sbjct:   871 EIERIRKEKEMEEERRRIQDLERQKEEERLR-KEREMK-EERQR 912
GO:0008150 "biological_process" evidence=ND
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|F1MN61 Bt.111284 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZG5 CENPE "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287291 abpD "interaptin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0001468 SYS3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59UF5 SYS3 "Potential GRIP domain Golgi protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
COG1269 660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 3e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 8e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 2e-04
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-04
PHA02562562 PHA02562, 46, endonuclease subunit; Provisional 5e-04
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG1269 660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 0.002
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.002
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.002
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.002
pfam13166 713 pfam13166, AAA_13, AAA domain 0.002
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.004
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 75/344 (21%), Positives = 162/344 (47%), Gaps = 13/344 (3%)

Query: 34   LEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEF 93
            L+  +E    ++ + +KL E  K+ + + + L DL ++ ++ + +     + L++     
Sbjct: 669  LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 94   KELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRK 153
            +E  E+ Q  L +  E +  L  +  EL+ + EE  +  ++  + L     EI+++  ++
Sbjct: 729  EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 154  DAEIEKLSKENEKLSM--DLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELE 211
             A  E+L +  E+L      +    +E+  L +  ++ +  IE L +E E   +   ELE
Sbjct: 789  QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848

Query: 212  KQVHEL-----NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNN 266
            +++ EL      + +EL+ L  E    +DE+++   + ++L  E+   E  + +L ++  
Sbjct: 849  EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908

Query: 267  ELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLE 326
            +L ERL  +E ++E L  ++    E+L       EE   T   E + E++ + EEI+ L 
Sbjct: 909  KLRERLEELEAKLERLEVELPELEEEL------EEEYEDTLETELEREIERLEEEIEALG 962

Query: 327  EVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL 370
             V      E   +  + +    + + L+E   K   +++E D+ 
Sbjct: 963  PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 495
PRK02224 880 chromosome segregation protein; Provisional 97.5
PRK02224 880 chromosome segregation protein; Provisional 96.78
PRK03918880 chromosome segregation protein; Provisional 96.62
PRK01156 895 chromosome segregation protein; Provisional 96.33
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 96.3
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.26
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 96.25
COG11961163 Smc Chromosome segregation ATPases [Cell division 95.95
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 95.65
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.28
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.93
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 94.83
PRK03918 880 chromosome segregation protein; Provisional 94.43
KOG0994|consensus1758 93.78
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.52
PRK04778569 septation ring formation regulator EzrA; Provision 90.8
PRK01156 895 chromosome segregation protein; Provisional 90.24
KOG0161|consensus 1930 88.71
PRK11637428 AmiB activator; Provisional 88.41
KOG0161|consensus 1930 88.28
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 84.97
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 83.98
PHA02562562 46 endonuclease subunit; Provisional 82.42
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 81.98
PF07412200 Geminin: Geminin; InterPro: IPR022786 This family 81.25
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 81.18
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 80.99
KOG0250|consensus1074 80.65
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information 
Probab=97.50  E-value=0.052  Score=54.94  Aligned_cols=22  Identities=27%  Similarity=0.638  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhc
Q psy444          317 EMREEIKRLEEVLKENECERAG  338 (495)
Q Consensus       317 emreeikrleevlkenecerag  338 (495)
                      ..+..|..++..|.++.|.-.|
T Consensus       437 ~~~~~l~~~~~~l~~~~Cp~C~  458 (880)
T PRK02224        437 TARERVEEAEALLEAGKCPECG  458 (880)
T ss_pred             HHHHHHHHHHHHHhcccCCCCC
Confidence            3444444555455566665555

>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long) Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-04
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 3e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 62/345 (17%), Positives = 141/345 (40%), Gaps = 14/345 (4%)

Query: 1    MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART 60
            M L   +      T+  E      +   +  +  +  +   + ++QK  +L E     + 
Sbjct: 840  MXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899

Query: 61   KDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLE 120
            K Q   +L  + ++   +    +Q LE+I  E +   E+ +    Q     + +  + L+
Sbjct: 900  KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959

Query: 121  LKVQYEEEIDNR----------DTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMD 170
            L+ Q EEE   R          D +IK++  D   ++   ++   E + L +    L+ +
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 171  LVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEI 230
            L  +E ++   L K  +K ++ I  L    +   K  +ELEK   +L    E   L+ +I
Sbjct: 1020 LA-EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL--EGESSDLHEQI 1076

Query: 231  IHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKT 290
                 +I +  +++ +   E+ +    ++    Q N  ++++  +E  I  L +D++ + 
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 291  EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
               +K  ++  +L        K EL++  +     +E+   +  +
Sbjct: 1137 AARNKAEKQKRDL-SEELEALKTELEDTLDTTATQQELRGSDYKD 1180
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.78
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.58
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 91.24
2zxx_A79 Geminin; coiled-coil, cell cycle, coiled coil, DNA 84.5
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 80.86
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=95.78  E-value=0.02  Score=59.44  Aligned_cols=12  Identities=33%  Similarity=0.562  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHH
Q psy444          316 DEMREEIKRLEE  327 (495)
Q Consensus       316 demreeikrlee  327 (495)
                      .++..+|..+++
T Consensus      1119 ~~Le~eie~L~e 1130 (1184)
T 1i84_S         1119 RELESHISDLQE 1130 (1184)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            333333433333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 90.41
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.86  Score=32.29  Aligned_cols=79  Identities=16%  Similarity=0.281  Sum_probs=58.2

Q ss_pred             hhhhHHHHHHHHhhhhc--chhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccch
Q psy444          202 ANVKLCKELEKQVHELN--INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRI  279 (495)
Q Consensus       202 anvklckelekqvheln--inkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvepri  279 (495)
                      ||=.||...-..+.++.  |+.-...+..++......+..-..+.+.++++|.+.+..+..+......|++.-..--|.|
T Consensus         2 ~~~~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i   81 (114)
T d1hcia4           2 ANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHT   81 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            56667777666666653  3444556666665544567777889999999999999999999999999998765544544


Q ss_pred             h
Q psy444          280 E  280 (495)
Q Consensus       280 e  280 (495)
                      .
T Consensus        82 ~   82 (114)
T d1hcia4          82 N   82 (114)
T ss_dssp             S
T ss_pred             H
Confidence            3