Psyllid ID: psy4451

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccHHEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSlpsikvrdgalhaiqcDEINILKLILDWqkchkpesefkghcnsndfpkciTPLMLAAQLGRLEIVALLLErghcipyphlptcqcvqvcqntdnlnskpqppssiiniyrskrffSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQdlerkywhfldptLVAESLFAVATVMSFCNLLFLCQLsydlgpmqvsvgkMTEDIMKFSVLFGIIMLAFTVGKKLQ
Flexible Loop (DISEMBL)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDnlnskpqppssiINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Low Complexity Region (SEG)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Disordered region (IsUnstruct)
*FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC***************IINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG****
Disordered Region (DISOPRED)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Disordered Region (DISEMBL)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Disordered Region (DISPRO)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCH************NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNT*********PSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKK**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
P48994	1124	Transient-receptor-potent	yes	N/A	0.433	0.098	0.336	9e-13
Q9VJJ7	1128	Transient receptor potent	no	N/A	0.406	0.092	0.348	1e-12
P48995	793	Short transient receptor	yes	N/A	0.355	0.114	0.421	1e-12
Q61056	793	Short transient receptor	yes	N/A	0.355	0.114	0.421	1e-12
Q9TUN9	759	Short transient receptor	yes	N/A	0.355	0.119	0.421	2e-12
Q9QX01	759	Short transient receptor	yes	N/A	0.355	0.119	0.421	2e-12
O62852	974	Short transient receptor	no	N/A	0.390	0.102	0.346	8e-12
Q9UL62	973	Short transient receptor	no	N/A	0.390	0.102	0.346	8e-12
O18784	793	Short transient receptor	no	N/A	0.355	0.114	0.410	9e-12
P34586	1027	Transient-receptor-potent	no	N/A	0.433	0.108	0.353	9e-12

>sp|P48994|TRPL_DROME Transient-receptor-potential-like protein OS=Drosophila melanogaster GN=trpl PE=1 SV=2

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQD-----LERKYWHFLDPTLVA 196
           K +    WN  +  + SL+V        AY+       +D     + R+ WH  DP L+A
Sbjct: 455 KSYLRNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDFDPQLIA 514

Query: 197 ESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           E LFA A V S   L+ L  ++  LGP+Q+S+G+M  DI+KF  ++ +++ AF  G
Sbjct: 515 EGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFACG 570

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction. Required for vision in the dark and in dim light. Binds calmodulin. Trp and trpl act together in the light response, although it is unclear whether as heteromultimers or distinct units. Also forms a functional cation channel with trp-gamma. Activated by fatty acids, metabolic stress, inositols and GTP-binding proteins.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VJJ7|TRPG_DROME Transient receptor potential-gamma protein OS=Drosophila melanogaster GN=trpgamma PE=1 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 149 WNIYEVFKCSLFVLTFMFWVAAYVSVR---LYDQQ--DLERKYWHFLDPTLVAESLFAVA 203
           WN+ +    SL+V T    V ++  V+   +Y+    DL R+ W   DP L++E LF+ A
Sbjct: 442 WNVIDFVTNSLYVATVALRVVSFFQVQKEMIYNSHATDLPRERWDAWDPMLISEGLFSAA 501

Query: 204 TVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            + S   L+++  ++  LGP+QVS+ +M  DIMKF  L+ +++ AF  G
Sbjct: 502 NIFSSLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSG 550

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction (By similarity). Forms a regulated cation channel when heteromultimerized with trpl.

Drosophila melanogaster (taxid: 7227)

>sp|P48995|TRPC1_HUMAN Short transient receptor potential channel 1 OS=Homo sapiens GN=TRPC1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 158 SLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQL 217
           SL++ TF   V A+   + +D  D  RK W    PTLVAE LFA A V+S+  L F+   
Sbjct: 464 SLYLATFALKVVAHN--KFHDFAD--RKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTT 519

Query: 218 SYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           S  LGP+Q+S+G+M +D  KF  +F +++ +FT+G
Sbjct: 520 SSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIG 554

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|Q61056|TRPC1_MOUSE Short transient receptor potential channel 1 OS=Mus musculus GN=Trpc1 PE=1 SV=5

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 158 SLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQL 217
           SL++ TF   V A+   + +D  D  RK W    PTLVAE LFA A V+S+  L F+   
Sbjct: 464 SLYLATFALKVVAHN--KFHDFAD--RKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTT 519

Query: 218 SYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           S  LGP+Q+S+G+M +D  KF  +F +++ +FT+G
Sbjct: 520 SSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIG 554

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Mus musculus (taxid: 10090)

>sp|Q9TUN9|TRPC1_RABIT Short transient receptor potential channel 1 OS=Oryctolagus cuniculus GN=TRPC1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 158 SLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQL 217
           SL++ TF   V A+   + +D  D  RK W    PTLVAE LFA A V+S+  L F+   
Sbjct: 430 SLYLATFALKVVAHN--KFHDFAD--RKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTT 485

Query: 218 SYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           S  LGP+Q+S+G+M +D  KF  +F +++ +FT+G
Sbjct: 486 SSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIG 520

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9QX01|TRPC1_RAT Short transient receptor potential channel 1 OS=Rattus norvegicus GN=Trpc1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 158 SLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQL 217
           SL++ TF   V A+   + +D  D  RK W    PTLVAE LFA A V+S+  L F+   
Sbjct: 430 SLYLATFALKVVAHN--KFHDFAD--RKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTT 485

Query: 218 SYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           S  LGP+Q+S+G+M +D  KF  +F +++ +FT+G
Sbjct: 486 SSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIG 520

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Rattus norvegicus (taxid: 10116)

>sp|O62852|TRPC5_RABIT Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
           WN+ +    SL++ T    + AYV           R+ W    PTL+AE+LFA++ ++S 
Sbjct: 435 WNLMDFAMNSLYLATISLKIVAYVKY----NGSRPREEWEMWHPTLIAEALFAISNILSS 490

Query: 209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
             L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct: 491 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 534

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
           WN+ +    SL++ T    + AYV           R+ W    PTL+AE+LFA++ ++S 
Sbjct: 435 WNLMDFAMNSLYLATISLKIVAYVKY----NGSRPREEWEMWHPTLIAEALFAISNILSS 490

Query: 209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
             L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct: 491 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 534

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|O18784|TRPC1_BOVIN Short transient receptor potential channel 1 OS=Bos taurus GN=TRPC1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 158 SLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQL 217
           SL++ TF     A+   + +D  D  RK W    PTLVAE LFA A V+S+  L F    
Sbjct: 464 SLYLATFALKEEAHN--KFHDFAD--RKDWDAFHPTLVAEGLFAFANVLSYLRLFFYVYT 519

Query: 218 SYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           S  LGP+Q+S+G+M +D  KF  +F +++ +FT+G
Sbjct: 520 SSILGPLQISMGRMLQDFGKFLGMFLLVLFSFTIG 554

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion.

Bos taurus (taxid: 9913)

>sp|P34586|TRPL_CAEEL Transient-receptor-potential-like protein OS=Caenorhabditis elegans GN=trp-1 PE=2 SV=3

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYV--SVRLYDQQDLERKYWHFLDPTLVAESL 199
           KR+    WN  +     L++ T    ++AY   + R    +   R YW   +P LVAE+L
Sbjct: 461 KRYMRQWWNWLDFLMICLYLCTISIRLSAYYIFTYREDPYRYTVRTYWTSEEPMLVAEAL 520

Query: 200 FAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           FAV  V SF  +++L Q +  LGP+Q+S+G M  D+ KF  +F +I+ +F++G
Sbjct: 521 FAVGNVFSFARIIYLFQTNPYLGPLQISLGCMLVDVAKFCFIFVLIISSFSIG 573

Could mediate calcium entry and form a calcium permeant channel.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
383857351	762	PREDICTED: short transient receptor pote	0.449	0.150	0.521	3e-30
332019843	757	Short transient receptor potential chann	0.429	0.145	0.554	1e-29
307175352	757	Short transient receptor potential chann	0.429	0.145	0.545	1e-28
322791124	621	hypothetical protein SINV_02756 [Solenop	0.394	0.162	0.584	4e-28
91082017	779	PREDICTED: similar to trp-like protein [	0.394	0.129	0.514	2e-24
270008187	789	hypothetical protein TcasGA2_TC013866 [T	0.378	0.122	0.525	2e-24
193713585	747	PREDICTED: short transient receptor pote	0.417	0.143	0.527	7e-24
350405349	752	PREDICTED: short transient receptor pote	0.375	0.127	0.504	1e-23
340726510	752	PREDICTED: short transient receptor pote	0.375	0.127	0.504	1e-23
380020971	759	PREDICTED: short transient receptor pote	0.445	0.150	0.486	5e-23

>gi|383857351|ref|XP_003704168.1| PREDICTED: short transient receptor potential channel 5-like [Megachile rotundata]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 87/115 (75%)

Query: 138 IYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAE 197
           I+  +R+F+  WN +++    LF+LTFM+W+ A + VR+  Q +LERKYWH  DPTL+AE
Sbjct: 410 IHGPERYFTSAWNWFDLIMIFLFILTFMYWITAAIDVRINGQLELERKYWHKYDPTLIAE 469

Query: 198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            +F  AT+M+F  L+ +CQL Y+LGP+Q+S+GKM +D+ KF+VLF I+MLAFT G
Sbjct: 470 GIFCWATIMAFLKLMHICQLDYNLGPLQLSLGKMFKDVGKFTVLFSIMMLAFTAG 524

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019843|gb|EGI60304.1| Short transient receptor potential channel 5 [Acromyrmex echinatior]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 81/110 (73%)

Query: 143 RFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAV 202
           R F  R N YE+    LF+LTF+FW+ A + VR+  Q+DLERKYWH  DPTL+AE +F V
Sbjct: 417 RCFRTRTNWYELVMIILFILTFLFWIVAAIDVRINGQRDLERKYWHKYDPTLIAEGIFCV 476

Query: 203 ATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           AT+M+F  LLF+CQL YDLGP+Q+S+ KM  D+  F  +FGII++AF +G
Sbjct: 477 ATIMAFFKLLFICQLHYDLGPLQLSLVKMIRDVGHFVAIFGIIVMAFAIG 526

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175352|gb|EFN65371.1| Short transient receptor potential channel 5 [Camponotus floridanus]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 81/110 (73%)

Query: 143 RFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAV 202
           R F  R N YE+    LF+LTF+FW+ A + VR+  Q+DLERKYWH  DPTL+AE +F +
Sbjct: 417 RCFRTRTNWYELVMLVLFILTFLFWIVAALDVRMNGQRDLERKYWHKYDPTLIAEGIFCL 476

Query: 203 ATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           AT+M+F  LLF+CQL Y LGP+Q+S+ KM  D+  F  +FGII++AFT+G
Sbjct: 477 ATIMAFFKLLFICQLDYHLGPLQLSLVKMIRDVGHFVAIFGIIVIAFTIG 526

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791124|gb|EFZ15686.1| hypothetical protein SINV_02756 [Solenopsis invicta]

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 77/101 (76%)

Query: 152 YEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNL 211
           YE+    LFVLTF+FW+AA V VR+  Q++LERKYWH  DPTL+AE +F +A +M+F  L
Sbjct: 343 YELIMLILFVLTFLFWIAAAVDVRINGQRELERKYWHKYDPTLIAEGIFCIAAIMAFFKL 402

Query: 212 LFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
           LF+CQL YDLGP+Q+S+ KM  D+  F  +FGII+LAF VG
Sbjct: 403 LFICQLDYDLGPLQLSLVKMIRDVGHFVAIFGIIVLAFAVG 443

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082017|ref|XP_970049.1| PREDICTED: similar to trp-like protein [Tribolium castaneum]

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 72/101 (71%)

Query: 138 IYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAE 197
           I   +R+F+  WN + V   + FVLTF+FW+A+YV     DQ DLERKYWH LDP L+AE
Sbjct: 451 IQGPRRYFTYLWNWHAVISNTFFVLTFVFWLASYVDAVNNDQVDLERKYWHHLDPVLIAE 510

Query: 198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKF 238
             FAVA +M++  L+F C+L+Y LGP+Q+S+GKM  D+ K+
Sbjct: 511 GTFAVAVIMTYFKLMFFCRLNYYLGPLQISLGKMCSDMAKY 551

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008187|gb|EFA04635.1| hypothetical protein TcasGA2_TC013866 [Tribolium castaneum]

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 71/97 (73%)

Query: 142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFA 201
           +R+F+  WN + V   + FVLTF+FW+A+YV     DQ DLERKYWH LDP L+AE  FA
Sbjct: 465 RRYFTYLWNWHAVISNTFFVLTFVFWLASYVDAVNNDQVDLERKYWHHLDPVLIAEGTFA 524

Query: 202 VATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKF 238
           VA +M++  L+F C+L+Y LGP+Q+S+GKM  D+ K+
Sbjct: 525 VAVIMTYFKLMFFCRLNYYLGPLQISLGKMCSDMAKY 561

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713585|ref|XP_001942539.1| PREDICTED: short transient receptor potential channel 5-like [Acyrthosiphon pisum]

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 3/110 (2%)

Query: 143 RFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAV 202
           RFF + WNIY+  K  +   T + W  +Y++ R      +ERKYW  L PTLV E L AV
Sbjct: 429 RFFRMLWNIYDCVKLCMLGATVVCWWLSYLNPR---NPPVERKYWTSLHPTLVGEGLLAV 485

Query: 203 ATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            TVMS+  LLFLCQLSY LGP+QVS+GKMT D  + + +FGII++AFT G
Sbjct: 486 VTVMSYLRLLFLCQLSYSLGPLQVSLGKMTTDFARLAAVFGIIIVAFTAG 535

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405349|ref|XP_003487407.1| PREDICTED: short transient receptor potential channel 5-like [Bombus impatiens]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 87/115 (75%)

Query: 138 IYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAE 197
           I+  KRFF+  W  +E+   SLF+LTF++W+ A + VR+  Q +LERKYW+  DPTL+AE
Sbjct: 407 IHGPKRFFAGPWYWFEMIMISLFILTFLYWITAALDVRINGQLELERKYWNQYDPTLIAE 466

Query: 198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            ++ +AT+M+F  LL++CQL Y LGP+Q+S+G+M +D++KF +LF II+ AFT G
Sbjct: 467 GIYCLATIMAFLKLLYICQLDYHLGPLQLSLGQMIKDVVKFIILFSIIIFAFTAG 521

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726510|ref|XP_003401600.1| PREDICTED: short transient receptor potential channel 5-like [Bombus terrestris]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 87/115 (75%)

Query: 138 IYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAE 197
           I+  KRFF+  W  +E+   SLF+LTF++W+ A + VR+  Q +LERKYW+  DPTL+AE
Sbjct: 407 IHGPKRFFAGPWYWFEMIMISLFILTFLYWITAALDVRINGQLELERKYWNQYDPTLIAE 466

Query: 198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            ++ +AT+M+F  LL++CQL Y LGP+Q+S+G+M +D++KF +LF II+ AFT G
Sbjct: 467 GIYCLATIMAFLKLLYICQLDYHLGPLQLSLGQMIKDVVKFIILFSIIIFAFTAG 521

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020971|ref|XP_003694348.1| PREDICTED: short transient receptor potential channel 5-like [Apis florea]

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 86/115 (74%)

Query: 138 IYRSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAE 197
           I+  KRFF+V W  +E+    LF+LTF++W+ A + V++  Q +LERKYW+  DPTL+AE
Sbjct: 412 IHGPKRFFAVPWYWFEMIMIFLFILTFLYWITAALDVKINGQLELERKYWNMYDPTLIAE 471

Query: 198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
            ++ +AT+M+F  LL++CQL Y LGP+Q+S+ KM +D++KF +LF II+LAF+  
Sbjct: 472 GIYCLATIMAFLKLLYICQLDYHLGPLQLSLVKMIKDVLKFIILFTIIILAFSAA 526

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
FB|FBgn0005614	1124	trpl "trp-like" [Drosophila me	0.433	0.098	0.336	4.2e-25
UNIPROTKB|E1C452	766	TRPC5 "Uncharacterized protein	0.390	0.130	0.355	6.6e-24
UNIPROTKB|Q91ZM0	893	Trpc4 "Short transient recepto	0.390	0.111	0.365	8.1e-24
MGI|MGI:109525	974	Trpc4 "transient receptor pote	0.390	0.102	0.365	1e-23
UNIPROTKB|F1Q223	977	TRPC4 "Uncharacterized protein	0.390	0.102	0.365	1e-23
UNIPROTKB|Q9UBN4	977	TRPC4 "Short transient recepto	0.390	0.102	0.365	1e-23
UNIPROTKB|F1RS35	977	TRPC4 "Uncharacterized protein	0.390	0.102	0.365	1e-23
RGD|621276	977	Trpc4 "transient receptor pote	0.390	0.102	0.365	1e-23
UNIPROTKB|P79100	979	TRPC4 "Short transient recepto	0.390	0.102	0.365	1e-23
ZFIN|ZDB-GENE-040812-1	1045	trpc5a "transient receptor pot	0.390	0.095	0.365	1.6e-23

FB|FBgn0005614 trpl "trp-like" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
 Identities = 39/116 (33%), Positives = 61/116 (52%)

Query:   142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQD-----LERKYWHFLDPTLVA 196
             K +    WN  +  + SL+V        AY+       +D     + R+ WH  DP L+A
Sbjct:   455 KSYLRNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDFDPQLIA 514

Query:   197 ESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
             E LFA A V S   L+ L  ++  LGP+Q+S+G+M  DI+KF  ++ +++ AF  G
Sbjct:   515 EGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFACG 570

GO:0005516 "calmodulin binding" evidence=ISS;NAS;IDA;TAS

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0008086 "light-activated voltage-gated calcium channel activity" evidence=NAS;IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0035997 "rhabdomere microvillus membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0016028 "rhabdomere" evidence=IDA;NAS;TAS

GO:0009416 "response to light stimulus" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IDA

GO:0006816 "calcium ion transport" evidence=ISS;IDA

GO:0070588 "calcium ion transmembrane transport" evidence=IGI

GO:0071454 "cellular response to anoxia" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0016027 "inaD signaling complex" evidence=IPI

GO:0005261 "cation channel activity" evidence=TAS

GO:0015279 "store-operated calcium channel activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0007589 "body fluid secretion" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|E1C452 TRPC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
 Identities = 37/104 (35%), Positives = 62/104 (59%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + AYV    Y+     R+ W    PTL+AE+LFA++ ++S 
Sbjct:   435 WNLMDFAMNSLYLATISLKIVAYVK---YNGSR-PREEWEMWHPTLIAEALFAISNILSS 490

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   491 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 534

GO:0005262 "calcium channel activity" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

UNIPROTKB|Q91ZM0 Trpc4 "Short transient receptor potential channel 4" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:109525 Trpc4 "transient receptor potential cation channel, subfamily C, member 4" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0005901 "caveola" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IMP

GO:0015279 "store-operated calcium channel activity" evidence=ISO;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0034704 "calcium channel complex" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0045296 "cadherin binding" evidence=ISO

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

GO:0070509 "calcium ion import" evidence=ISO

GO:0070588 "calcium ion transmembrane transport" evidence=IMP

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IDA

UNIPROTKB|F1Q223 TRPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

UNIPROTKB|Q9UBN4 TRPC4 "Short transient receptor potential channel 4" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0005901 "caveola" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0034704 "calcium channel complex" evidence=IDA

GO:0006816 "calcium ion transport" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0070509 "calcium ion import" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0045296 "cadherin binding" evidence=IPI

GO:0005911 "cell-cell junction" evidence=IDA

UNIPROTKB|F1RS35 TRPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005901 "caveola" evidence=IEA

RGD|621276 Trpc4 "transient receptor potential cation channel, subfamily C, member 4" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0005262 "calcium channel activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005901 "caveola" evidence=IEA;ISO

GO:0005911 "cell-cell junction" evidence=IEA;ISO

GO:0006816 "calcium ion transport" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA;ISO

GO:0015279 "store-operated calcium channel activity" evidence=IEA;ISO

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

GO:0030863 "cortical cytoskeleton" evidence=IEA;ISO

GO:0034704 "calcium channel complex" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045296 "cadherin binding" evidence=IEA;ISO

GO:0051924 "regulation of calcium ion transport" evidence=IMP

GO:0070509 "calcium ion import" evidence=IEA;ISO

GO:0070588 "calcium ion transmembrane transport" evidence=ISO

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA;ISO

UNIPROTKB|P79100 TRPC4 "Short transient receptor potential channel 4" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + A+V    Y   +  R+ W    PTLVAE+LFA+A + S 
Sbjct:   434 WNLMDFVMNSLYLATISLKIVAFVK---YSALN-PRESWDMWHPTLVAEALFAIANIFSS 489

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   490 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 533

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005901 "caveola" evidence=IEA

ZFIN|ZDB-GENE-040812-1 trpc5a "transient receptor potential cation channel, subfamily C, member 5a" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:   149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSF 208
             WN+ +    SL++ T    + AYV    Y+     R+ W    PTL+AE+LFA+A + S 
Sbjct:   438 WNLMDFAMNSLYLATISLKIVAYVK---YNSSR-PREEWEMWHPTLIAEALFAIANIFSS 493

Query:   209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG 252
               L+ L   +  LGP+Q+S+G+M  DI+KF  ++ +++LAF  G
Sbjct:   494 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANG 537

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	256
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	9e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 7/107 (6%)

Query: 149 WNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDL--ERKYWHFLDPTLVAESLFAVATVM 206
           WNI +    S ++ TF+    A + V     Q     R++W   DPTL+ E+LFA A V+
Sbjct: 423 WNILDFGMNSFYLATFLDRPFAILFVT----QAFLVLREHWLRFDPTLIEEALFAFALVL 478

Query: 207 SFCNLLFLCQLSYDLGPMQVSVGKMT-EDIMKFSVLFGIIMLAFTVG 252
           S+ NLL++ + +  LGP+Q+ +G+M   DI++F  ++ +++  F  G
Sbjct: 479 SWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACG 525

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)

Query: 12  LQTAIIKNDVMMVKYLLSL---PSIKVRDGALH-AIQCDEINILKLILDWQKCHKPESEF 67
           L  A    ++ +VK LL      ++   D ALH A +   + I+KL+L          E 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLL----------EH 50

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               N+ D     T L LAA+ G LEIV LLLE G
Sbjct: 51  GADVNAKDKDGN-TALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +VK LL      + K  DG   LH A +   + I+KL+L      
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL------ 60

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               E     N+ D     TPL LAA+ G L++V LLL+ G
Sbjct: 61  ----EKGADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHG 96

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG--ALHAIQCDEINILKLILDWQKCHKPES 65
           G SAL  A I+N+ + +  LL   S +   G   LHAI  + ++ ++ IL        +S
Sbjct: 52  GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111

Query: 66  EFKGHCN---SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNT 122
                 N   +++F   IT L LAA     EIV LLLERG  +P               +
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPA----RACGD-FFVKS 166

Query: 123 DNLNS 127
             ++S
Sbjct: 167 QGVDS 171

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 17/98 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +VK LL      + + +DG   LH A +   ++++KL+L      
Sbjct: 40  GRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH---- 95

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
                     N+ D     TPL LAA+ G LE+V LLL
Sbjct: 96  ------GADVNARDKDGR-TPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 81  TPLMLAAQLGRLEIVALLLERGHCI 105
           TPL LAA+ G LE+V LLLE G  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 39  ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVAL 97
            LH A     + ++KL+L          E     N+ D     TPL LAA+ G LEIV L
Sbjct: 10  PLHLAASNGHLEVVKLLL----------ENGADVNAKDNDGR-TPLHLAAKNGHLEIVKL 58

Query: 98  LLERGHCI 105
           LLE+G  +
Sbjct: 59  LLEKGADV 66

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 40  LH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
           LH A +   + ++KL+L+                  +     T L LAA+ G LEIV LL
Sbjct: 1   LHLAAKNGNLELVKLLLE-------------KGADVNLGDTDTALHLAARNGNLEIVKLL 47

Query: 99  LERGHCI 105
           LE G  +
Sbjct: 48  LEHGADV 54

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG3609|consensus	822		100.0
TIGR00870	743	trp transient-receptor-potential calcium channel p	100.0
KOG3676|consensus	782		99.96
KOG0510|consensus	929		99.94
KOG4412|consensus	226		99.82
KOG4412|consensus	226		99.78
PHA02791	284	ankyrin-like protein; Provisional	99.71
PHA02743	166	Viral ankyrin protein; Provisional	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
KOG0509|consensus	600		99.68
PHA02791	284	ankyrin-like protein; Provisional	99.68
KOG0502|consensus	296		99.66
PHA02875	413	ankyrin repeat protein; Provisional	99.66
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.65
PHA02795	437	ankyrin-like protein; Provisional	99.64
PHA02741	169	hypothetical protein; Provisional	99.64
KOG0514|consensus	452		99.63
PHA02874	434	ankyrin repeat protein; Provisional	99.63
PHA02736	154	Viral ankyrin protein; Provisional	99.63
PHA02878	477	ankyrin repeat protein; Provisional	99.63
PHA02798	489	ankyrin-like protein; Provisional	99.62
PHA03100	480	ankyrin repeat protein; Provisional	99.61
KOG0195|consensus	448		99.61
PHA02859	209	ankyrin repeat protein; Provisional	99.61
PHA02859	209	ankyrin repeat protein; Provisional	99.6
PHA02874	434	ankyrin repeat protein; Provisional	99.6
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.58
PHA02741	169	hypothetical protein; Provisional	99.58
PHA02875	413	ankyrin repeat protein; Provisional	99.57
PHA03095	471	ankyrin-like protein; Provisional	99.56
KOG0508|consensus	615		99.56
PHA02878	477	ankyrin repeat protein; Provisional	99.56
PHA02946	446	ankyin-like protein; Provisional	99.55
PHA02743	166	Viral ankyrin protein; Provisional	99.54
PHA03100	480	ankyrin repeat protein; Provisional	99.53
PHA02876	682	ankyrin repeat protein; Provisional	99.53
KOG0509|consensus	600		99.53
PHA02736	154	Viral ankyrin protein; Provisional	99.53
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.52
PHA02795	437	ankyrin-like protein; Provisional	99.51
KOG0508|consensus	615		99.5
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.5
KOG0512|consensus	228		99.5
PHA02884	300	ankyrin repeat protein; Provisional	99.49
PHA03095	471	ankyrin-like protein; Provisional	99.49
PHA02798	489	ankyrin-like protein; Provisional	99.49
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.48
PHA02876	682	ankyrin repeat protein; Provisional	99.47
PHA02946	446	ankyin-like protein; Provisional	99.46
KOG0512|consensus	228		99.46
KOG4177|consensus	1143		99.45
KOG3614|consensus	1381		99.44
KOG4214|consensus	117		99.43
KOG0507|consensus	854		99.43
PHA02917	661	ankyrin-like protein; Provisional	99.43
KOG4177|consensus	1143		99.41
PHA02730	672	ankyrin-like protein; Provisional	99.41
PHA02989	494	ankyrin repeat protein; Provisional	99.4
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.4
PHA02917	661	ankyrin-like protein; Provisional	99.38
KOG0510|consensus	929		99.34
PHA02730	672	ankyrin-like protein; Provisional	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG0505|consensus	527		99.32
KOG0515|consensus	752		99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.26
KOG3676|consensus	782		99.24
PHA02792	631	ankyrin-like protein; Provisional	99.23
KOG0514|consensus	452		99.23
PLN03223	1634	Polycystin cation channel protein; Provisional	99.18
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.15
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.14
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.13
PHA02792	631	ankyrin-like protein; Provisional	99.13
KOG0505|consensus	527		99.12
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	99.12
KOG0507|consensus	854		99.11
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.11
KOG4214|consensus	117		99.09
KOG1710|consensus	396		99.08
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.08
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.98
KOG0195|consensus	448		98.97
KOG0502|consensus	296		98.97
KOG1710|consensus	396		98.92
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.89
PF13606	30	Ank_3: Ankyrin repeat	98.84
KOG0515|consensus	752		98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.75
KOG3599|consensus	798		98.73
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.7
KOG0818|consensus	669		98.69
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG0783|consensus	1267		98.52
KOG4369|consensus	2131		98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.33
KOG4369|consensus	2131		98.32
KOG0506|consensus	622		98.27
KOG0705|consensus	749		98.24
KOG0782|consensus	1004		98.23
KOG0522|consensus	560		98.02
KOG0506|consensus	622		97.87
KOG0511|consensus	516		97.85
KOG0522|consensus	560		97.82
KOG0705|consensus	749		97.78
KOG0783|consensus	1267		97.71
KOG0782|consensus	1004		97.7
KOG0818|consensus	669		97.63
KOG2384|consensus	223		97.62
KOG0521|consensus	785		97.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.21
KOG0520|consensus	975		97.2
KOG0521|consensus	785		97.08
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.9
KOG0511|consensus	516		96.88
KOG0520|consensus	975		96.83
KOG2384|consensus	223		96.68
KOG3609|consensus	822		95.45
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.01
KOG2505|consensus	591		93.83
KOG2505|consensus	591		93.55
KOG2301|consensus	1592		91.77
KOG2302|consensus	1956		90.32
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.95
KOG2302|consensus	1956		86.74
KOG2301|consensus	1592		86.45
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.22
KOG3733|consensus	566		82.7
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.48
KOG1545|consensus	507		80.71

>KOG3609|consensus

Probab=100.00  E-value=2.7e-51  Score=376.63  Aligned_cols=252  Identities=32%  Similarity=0.577  Sum_probs=227.8

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCCchhHHHHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCI   80 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~   80 (256)
                      ++|+|.-|+++|+.|+++.|.|+.++|+++ +...|++.|||+..|..+.|+.++.|.... ++.+..+....+.+..+.
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~-~~~~gdALL~aI~~~~v~~VE~ll~~~~~~-~~~~~~~d~~~~~ft~di  132 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDT-SSEEGDALLLAIAVGSVPLVELLLVHFVDA-PYLERSGDANSPHFTPDI  132 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHhccccc-chhccccccCcccCCCCc
Confidence            589999999999999999999999999999 778899999999999999999999985433 223335677778899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccccccccC----------------------------------
Q psy4451          81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLN----------------------------------  126 (256)
Q Consensus        81 TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~~~~~~~----------------------------------  126 (256)
                      ||+++||+++|+||+++|+++|++++.||+.+|.|.+ |......|                                  
T Consensus       133 tPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~-C~~~~~~dslhS~srin~yraLaSpa~i~LsS~DPiltAf~L  211 (822)
T KOG3609|consen  133 TPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKT-CKRETVTDSLHSLSRVNIYRALASPALIWLSSDDPILTAFAL  211 (822)
T ss_pred             cHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchH-hhhccccCCcchHHHHHHHHHhhcHHHHHccCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999 98877776                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy4451         127 --------------------------------------------------------------------------------  126 (256)
Q Consensus       127 --------------------------------------------------------------------------------  126 (256)
                                                                                                      
T Consensus       212 S~eL~~La~~E~Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~iLn~~~~~~~~~~~~sl~RLklAIkyeqK~FVahpN  291 (822)
T KOG3609|consen  212 SWDLQQLASDELEFKEDYRDLSMQCQRFAVDLLDQARTSDELEMILNNRNNCPERMTRISLPRLKLAIKYEQKEFVAHPN  291 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCCCCcccccccccHHHHHHHHHhhhheecCcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy4451         127 --------------------------------------------------------------------------------  126 (256)
Q Consensus       127 --------------------------------------------------------------------------------  126 (256)
                                                                                                      
T Consensus       292 cQq~L~siWy~g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~  371 (822)
T KOG3609|consen  292 CQQLLKSVWYSGWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGF  371 (822)
T ss_pred             HHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                                                                                            


Q ss_pred             -----CCCCC-CC--------ceEEee----------cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy4451         127 -----SKPQP-PS--------SIINIY----------RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDL  182 (256)
Q Consensus       127 -----s~~~~-~~--------w~i~~~----------~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~  182 (256)
                           +.+|| |+        |++|+.          |...|++++|||+|++++++|++++.+|++++.+.......+.
T Consensus       372 ~~~~~~~~g~~p~~vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~  451 (822)
T KOG3609|consen  372 YFAWTDSRGVTPQALEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSV  451 (822)
T ss_pred             hhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                 12244 33        444443          9999999999999999999999999999999998876666788


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy4451         183 ERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKL  255 (256)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~~~  255 (256)
                      +|++|+++||++++|++||++++||++|++++++.|+.+||+|||+|||++||+||++||.+|++||++|++.
T Consensus       452 ~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~q  524 (822)
T KOG3609|consen  452 DRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQ  524 (822)
T ss_pred             chhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999973

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=100.00  E-value=3.5e-34  Score=275.76  Aligned_cols=246  Identities=25%  Similarity=0.349  Sum_probs=185.7

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------------------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------------------RDGALH-AIQCDEINILKLILDWQKCHKPE   64 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------------------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~   64 (256)
                      ..|.||||+|+.+|+.|+|++|+++ |+++                    |++||| |+..|+.+++++|+++|++.+..
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            5699999999999999999999998 5543                    678999 99999999999999999875421


Q ss_pred             ccc----------------------------------cCCCC----CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          65 SEF----------------------------------KGHCN----SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        65 ~~~----------------------------------~~~~~----~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      ...                                  .+.+.    +..|.+|.||||+|+..|+.+++++|++.+.+..
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~k  284 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQK  284 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcc
Confidence            100                                  01111    4468899999999999999999999998543322


Q ss_pred             ----CCCC------------CCCccc----cccccc-c--ccC-------------------------------------
Q psy4451         107 ----YPHL------------PTCQCV----QVCQNT-D--NLN-------------------------------------  126 (256)
Q Consensus       107 ----~~~~------------~~~~~~----~~~~~~-~--~~~-------------------------------------  126 (256)
                          .|..            .++...    +..... .  ...                                     
T Consensus       285 k~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~P~~~l~~~kw~pf~kf~~~~~~~~~fl~  364 (743)
T TIGR00870       285 KFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFHSASYLYFLY  364 (743)
T ss_pred             eeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1110            011100    000000 0  000                                     


Q ss_pred             ----------CC-------CC-CCCc---eEEee---------------cchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy4451         127 ----------SK-------PQ-PPSS---IINIY---------------RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAA  170 (256)
Q Consensus       127 ----------s~-------~~-~~~w---~i~~~---------------~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~  170 (256)
                                +.       ++ +|+|   ++..|               |...|+++.||++|++++.+|+++++++...
T Consensus       365 l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~  444 (743)
T TIGR00870       365 LIIFTSVAYYRPTRTDLRVTGLQQTPLEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFA  444 (743)
T ss_pred             HHHHHHHHhhcccccccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                      00       01 2332   22111               7889999999999999999999999999877


Q ss_pred             HHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy4451         171 YVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTE-DIMKFSVLFGIIMLAF  249 (256)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~~Gp~~~~l~~m~~-di~~F~~i~~v~~~af  249 (256)
                      +.....  .....+..|..++|..++++++|++++++|+|++++++.++.+||+++|++||++ |+++|+++|+||++||
T Consensus       445 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF  522 (743)
T TIGR00870       445 ILFVTQ--AFLVLREHWLRFDPTLIEEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGF  522 (743)
T ss_pred             Hhhhhh--hhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            653321  1235578899999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             hhhcc
Q psy4451         250 TVGKK  254 (256)
Q Consensus       250 ~~~~~  254 (256)
                      |+|++
T Consensus       523 ~~~~~  527 (743)
T TIGR00870       523 ACGLN  527 (743)
T ss_pred             HHHHH
Confidence            99985

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676|consensus

Probab=99.96  E-value=3.6e-28  Score=223.41  Aligned_cols=226  Identities=21%  Similarity=0.261  Sum_probs=157.2

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC-----------------------------chhHHH-HHHcCCHHHHHHHH
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV-----------------------------RDGALH-AIQCDEINILKLIL   55 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-----------------------------g~t~L~-A~~~g~~~~v~~Ll   55 (256)
                      ++|+||||.|+.+.+.++|++|++. |+|+                             |+.||. ||+.+++|++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            6799999999999999999999999 6765                             678998 99999999999999


Q ss_pred             hCCcCCCCCcc----------------------ccCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCC
Q psy4451          56 DWQKCHKPESE----------------------FKGHC--NSNDFPKCITPLMLAAQLGRLEIVALLLER-GHCIPYPHL  110 (256)
Q Consensus        56 ~~~~~~~~~~~----------------------~~~~~--~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~-ga~i~~~~~  110 (256)
                      ++|+|++....                      ..|++  ....|++|.|||.+||+.|+.||.+.+++. +..-..-.+
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp  340 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP  340 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc
Confidence            99998764321                      13455  667899999999999999999999999998 444443334


Q ss_pred             CCCcccc-----cccc----------ccccC-----------------------------------------------CC
Q psy4451         111 PTCQCVQ-----VCQN----------TDNLN-----------------------------------------------SK  128 (256)
Q Consensus       111 ~~~~~~~-----~~~~----------~~~~~-----------------------------------------------s~  128 (256)
                      ..|+.++     .|.+          ..+..                                               +.
T Consensus       341 vtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~~f~~~~~~~~~y~i~ft~~~y~RP~~  420 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGKKQFFMSLLIYLLYMICFTLAFYYRPAL  420 (782)
T ss_pred             cccccccchhcccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4444332     2310          00000                                               00


Q ss_pred             CCCCC-------------------ceEEee-----cchhhh----hhhhhHH---------HHHHHHHHHHHHHHHHHHH
Q psy4451         129 PQPPS-------------------SIINIY-----RSKRFF----SVRWNIY---------EVFKCSLFVLTFMFWVAAY  171 (256)
Q Consensus       129 ~~~~~-------------------w~i~~~-----~~~~~~----~~~wn~~---------d~~~~~l~~~~~~l~~~~~  171 (256)
                      .+++.                   |+++..     +...++    ..+|.++         -+...++.+++.++++...
T Consensus       421 ~~~~~~~~~~~~~~~~~r~~~e~~~l~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~~~~i~~~  500 (782)
T KOG3676|consen  421 EQAKLLDEAYINDYDELRLAGETLTLLGGILFLFCELPDIFLQGLPAYNGQLIDGPLFHVLGFLQAVLVLVSPVLRLGAI  500 (782)
T ss_pred             ccccchhhccccCchhhhhhhhHHHhhhhHhhhhhhhHhHHhcccHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01111                   111110     222232    1122222         1111222222222222211


Q ss_pred             HHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q psy4451         172 VSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMT-EDIMKFSVLFGIIMLAFT  250 (256)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~~Gp~~~~l~~m~-~di~~F~~i~~v~~~af~  250 (256)
                      .                      ..+.+++++..++|..+|||.|..+.+||+++||+||+ +|++||++||+||++|||
T Consensus       501 ~----------------------~~~~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~IY~Vfl~GFs  558 (782)
T KOG3676|consen  501 K----------------------WELALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLLIYLVFLVGFS  558 (782)
T ss_pred             H----------------------HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1                      14479999999999999999999999999999999999 999999999999999999


Q ss_pred             hhcc
Q psy4451         251 VGKK  254 (256)
Q Consensus       251 ~~~~  254 (256)
                      .+|.
T Consensus       559 qAfy  562 (782)
T KOG3676|consen  559 QAFY  562 (782)
T ss_pred             HHHH
Confidence            9985

>KOG0510|consensus

Probab=99.94  E-value=1.8e-26  Score=211.74  Aligned_cols=232  Identities=21%  Similarity=0.230  Sum_probs=156.4

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHh-CCcCC-CCC---------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILD-WQKCH-KPE---------   64 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~-~~~~~-~~~---------   64 (256)
                      -.|.+|.||||+|+++|+.+.++.|+.. |+++      +.+||| |+..|+.++++.|++ .+... +.+         
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH  346 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH  346 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence            4688899999999999999999999988 6655      568888 888888888888877 22211 100         


Q ss_pred             -------------ccccCCCCC---CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc--------cc----
Q psy4451          65 -------------SEFKGHCNS---NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ--------CV----  116 (256)
Q Consensus        65 -------------~~~~~~~~~---~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~--------~~----  116 (256)
                                   .-.+|+...   ..|.+|.||||+||..|+..++++|+.+|+++...+..+.+        |.    
T Consensus       347 laa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~~~~~p~~~  426 (929)
T KOG0510|consen  347 LAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRPDRCLPVFV  426 (929)
T ss_pred             hhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccccccccccHHH
Confidence                         001233322   34889999999999999999999999999999532111111        10    


Q ss_pred             -------------------------ccccccccc--C-------------------------------------------
Q psy4451         117 -------------------------QVCQNTDNL--N-------------------------------------------  126 (256)
Q Consensus       117 -------------------------~~~~~~~~~--~-------------------------------------------  126 (256)
                                               |.|...++.  +                                           
T Consensus       427 ~~~~~n~c~~~~~i~~~pe~~e~vlD~c~l~~~e~~~~~~~~Q~~~~~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~  506 (929)
T KOG0510|consen  427 HRSPFNKCPTTELIEPLPECFEIVLDFCILKSQERKDSPTPLQDEAAPILNIMVDKEQIELLEHPLSSSFLFMKWNRYGK  506 (929)
T ss_pred             hhCCCCCcchhhhhccchHHHHHHHHHHHHHHhhccCCCChhhhhhhhHHHHHhhhhHHHHhcChhHHHHHHHHHHHhhH
Confidence                                     011111000  0                                           


Q ss_pred             --------------------------------CC--------------CCCCC-----ceEEee----------------
Q psy4451         127 --------------------------------SK--------------PQPPS-----SIINIY----------------  139 (256)
Q Consensus       127 --------------------------------s~--------------~~~~~-----w~i~~~----------------  139 (256)
                                                      ++              +..++     |++.+|                
T Consensus       507 ~~~~~nL~~Y~lFlv~lT~Yv~~~~~~~~~n~~~~~~~~~~s~~se~lr~~~t~~i~~~~ili~~~i~~~~~~E~iQifq  586 (929)
T KOG0510|consen  507 YFHLNNLLIYSLFLVSLTIYVLLIKAGMAFNSSGTEIISKTSDHSEILRNNNTMLIAFCMILIFTSIILGILRECIQIFQ  586 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccceeehhccchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                            00              01111     222211                


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSY  219 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~  219 (256)
                      ..+.||-++-||+||+.+...++++.   ..+.                 .++.-....+.|++++++|.+++.+.+..+
T Consensus       587 qk~~Y~~~i~Nimew~iyts~li~v~---~~~~-----------------~~~~~~Q~~laa~aV~l~W~nllLmi~~~p  646 (929)
T KOG0510|consen  587 QKRHYFMDIENIMEWFIYTSALITVY---PLFF-----------------EITAHLQWVLAAFAVLLGWMNLLLMIGRFP  646 (929)
T ss_pred             HHHHHHhhhHHHHHHHHHhhhhheee---hhhh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            56667777777777765444333211   0000                 112222347999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy4451         220 DLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKL  255 (256)
Q Consensus       220 ~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~~~  255 (256)
                      .+|.+++|+-++.+.++|++.+|.++++||+.+|.+
T Consensus       647 ~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYV  682 (929)
T KOG0510|consen  647 VFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYV  682 (929)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            999999999999999999999999999999999864

>KOG4412|consensus

Probab=99.82  E-value=8.3e-21  Score=147.02  Aligned_cols=104  Identities=30%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|.+|+||||+||.-||.+++++|++..++.+      |+|||| |+..|+.++|+.|+.+          .+.+.|..+
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r----------~~advna~t  103 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR----------SGADVNATT  103 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC----------CCCCcceec
Confidence            45599999999999999999999997656544      899999 9999999999999987          477888889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +.|.|+||+||.+|+.||.++|+++|+.++..+..+|++..
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplH  144 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLH  144 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhH
Confidence            99999999999999999999999999999988888887754

>KOG4412|consensus

Probab=99.78  E-value=8.1e-19  Score=136.02  Aligned_cols=103  Identities=23%  Similarity=0.238  Sum_probs=94.3

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|..|+||||.|+..|+.|+||.|+.++++|+      |.|+|| |+.+|..+++++|+++           |+.++.+|
T Consensus        68 kDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~-----------ga~i~~kD  136 (226)
T KOG4412|consen   68 KDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK-----------GALIRIKD  136 (226)
T ss_pred             ccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc-----------CCCCcccc
Confidence            47889999999999999999999999877776      889999 9999999999999999           77788889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..|.||||-||..|+.+++++|+..|+.++..+..+.++..
T Consensus       137 ~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~  177 (226)
T KOG4412|consen  137 KQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLH  177 (226)
T ss_pred             cccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHH
Confidence            99999999999999999999999999999998888888754

>PHA02791 ankyrin-like protein; Provisional

Probab=99.71  E-value=6.9e-17  Score=138.41  Aligned_cols=98  Identities=27%  Similarity=0.245  Sum_probs=88.3

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFP   77 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      ..|.+|+||||+|+.+|+.+++++|+++ |+++    ++|||| |+..|+.+++++|+++           |.+.+.++.
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~-----------Gadvn~~d~   92 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLENEFPLHQAATLEDTKIVKILLFS-----------GMDDSQFDD   92 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCCCCCHHHHHHHCCCHHHHHHHHHC-----------CCCCCCCCC
Confidence            5789999999999999999999999998 5544    789999 9999999999999998           667778888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPT  112 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~  112 (256)
                      .|.||||+|+..|+.+++++|+++|++++.....+
T Consensus        93 ~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g  127 (284)
T PHA02791         93 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG  127 (284)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC
Confidence            99999999999999999999999999998665544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.70  E-value=1.2e-16  Score=126.90  Aligned_cols=98  Identities=11%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             ccCCCCChHHHHHHHhCCHHH---HHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHh-CCcCCCCCccccCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMM---VKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILD-WQKCHKPESEFKGH   70 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~---v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~   70 (256)
                      ..|.+|+||||+|+.+|+.+.   +++|+++ |+++       |+|||| |+..|+.+++++|++ .           |.
T Consensus        52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~-----------ga  119 (166)
T PHA02743         52 RYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADINARELGTGNTLLHIAASTKNYELAEWLCRQL-----------GV  119 (166)
T ss_pred             ccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc-----------CC
Confidence            457888999999998887654   7888887 4432       678998 888999999998885 5           66


Q ss_pred             CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy4451          71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPT  112 (256)
Q Consensus        71 ~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~  112 (256)
                      +.+.++..|.||||+|+..++.+++++|+++|++++.|...+
T Consensus       120 d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743        120 NLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            677788889999999999999999999999999998887653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.6e-16  Score=112.71  Aligned_cols=85  Identities=33%  Similarity=0.434  Sum_probs=76.2

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCCCC--chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHH
Q psy4451          12 LQTAIIKNDVMMVKYLLSLPSIKV--RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQ   88 (256)
Q Consensus        12 Lh~A~~~~~~~~v~~Ll~~~~~~~--g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~   88 (256)
                      ||.|+++|+.++++.|++. +.+.  |++|+| |+..|+.+++++|+++           |.+.+.++..|.||||.|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~-----------g~~~~~~~~~g~t~L~~A~~   68 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINLGNTALHYAAENGNLEIVKLLLEN-----------GADINSQDKNGNTALHYAAE   68 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTSSSBHHHHHHHTTTHHHHHHHHHT-----------TTCTT-BSTTSSBHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHh-----------cccccccCCCCCCHHHHHHH
Confidence            7999999999999999997 5555  589999 9999999999999999           67777888999999999999


Q ss_pred             cCcHHHHHHHHHCCCCCCCC
Q psy4451          89 LGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        89 ~g~~eiv~~Ll~~ga~i~~~  108 (256)
                      .|+.|++++|+++|++++..
T Consensus        69 ~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   69 NGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             TTHHHHHHHHHHTTT-TTSS
T ss_pred             cCCHHHHHHHHHcCCCCCCc
Confidence            99999999999999998753

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0509|consensus

Probab=99.68  E-value=7e-17  Score=146.01  Aligned_cols=115  Identities=25%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc--------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPES--------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~--------   65 (256)
                      .-.|++|-|+||+|+.||+.+++++|+++ |+++       +.|||| |+++|+..+|++|+++|+|++...        
T Consensus        72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lH  150 (600)
T KOG0509|consen   72 NNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLH  150 (600)
T ss_pred             CCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHH
Confidence            34689999999999999999999999999 6655       569999 999999999999999966643210        


Q ss_pred             --------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC-CCCCcccc
Q psy4451          66 --------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH-LPTCQCVQ  117 (256)
Q Consensus        66 --------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~-~~~~~~~~  117 (256)
                                    ...+.+.+.+|++|+||||+||.+|+...+..|++.|+++...+ ..++++..
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLH  217 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLH  217 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHH
Confidence                          01345555555556666666655555555555555555555444 44555544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.68  E-value=3.9e-16  Score=133.75  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------c-hhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------R-DGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g-~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++      | .|||| |+..|+.+++++|++++++..           
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~-----------  155 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----------  155 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc-----------
Confidence            35688899999999999999999999998 5654      4 48998 999999999999998743210           


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC  113 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~  113 (256)
                       ....|.||||.|++.|+.+++++|+++|++++..+..+.
T Consensus       156 -d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~  194 (284)
T PHA02791        156 -DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF  194 (284)
T ss_pred             -ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCC
Confidence             002356777777777777777777777777765554444

>KOG0502|consensus

Probab=99.66  E-value=1.5e-16  Score=127.12  Aligned_cols=105  Identities=21%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ++..|+.|-|||.+|+.+||+++|++||+. |+++      .+++|. |++.|..++|++|+..           +.+.|
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-----------~vdVN  220 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTR-----------EVDVN  220 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-----------CCCcc
Confidence            456799999999999999999999999999 8887      568887 9999999999999998           77888


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..|.+|.|||.+|++.|+.++++.|+..|++++...+.+....+
T Consensus       221 vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~md  264 (296)
T KOG0502|consen  221 VYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMD  264 (296)
T ss_pred             eeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHH
Confidence            89999999999999999999999999999999987776665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.66  E-value=7.1e-16  Score=139.31  Aligned_cols=95  Identities=26%  Similarity=0.417  Sum_probs=60.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      +|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.++++.|+++           |.+.+.++..|
T Consensus       101 ~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-----------g~~~~~~d~~g  168 (413)
T PHA02875        101 DGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-----------KACLDIEDCCG  168 (413)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-----------CCCCCCCCCCC
Confidence            444555555555555555555544 3332      344554 5555555555555544           56667778888


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy4451          80 ITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC  113 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~  113 (256)
                      .||||+|+..|+.|++++|++.|++++.....++
T Consensus       169 ~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~  202 (413)
T PHA02875        169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC  202 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC
Confidence            8899988888888888888888888886665543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.65  E-value=5.6e-16  Score=151.03  Aligned_cols=115  Identities=19%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC----------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPE----------   64 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~----------   64 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++      |+|||| |+..|+.+++++|++.++..++.          
T Consensus       552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa  630 (823)
T PLN03192        552 DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAA  630 (823)
T ss_pred             CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHH
Confidence            45789999999999999999999999998 6665      889999 99999999999998876644321          


Q ss_pred             ----------ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC-Ccccc
Q psy4451          65 ----------SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPT-CQCVQ  117 (256)
Q Consensus        65 ----------~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~-~~~~~  117 (256)
                                ....|.+.+.+|.+|.||||.|+..|+.+++++|+++|++++.++..+ .+..+
T Consensus       631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~  694 (823)
T PLN03192        631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE  694 (823)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence                      112578889999999999999999999999999999999999877655 55544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.6e-15  Score=135.55  Aligned_cols=116  Identities=16%  Similarity=0.055  Sum_probs=100.7

Q ss_pred             ccCCCCChHHHHHHH--hCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCC-CCC-------c--
Q psy4451           3 YLLFQGVSALQTAII--KNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCH-KPE-------S--   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~--~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~-~~~-------~--   65 (256)
                      ..+..++|+||.|+.  .|+.|+|++|+++ |+++    +.||+| |+..|+.+++++|+++|++. +..       .  
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            567889999999999  8999999999999 8886    468999 99999999999999999732 111       0  


Q ss_pred             ------------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          66 ------------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 ------------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                                        -..|++.+.++..|.||||.|+..|+.+++++|+++|++++..+..+++|...+
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~A  261 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA  261 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence                              014788899999999999999999999999999999999999999999987643

>PHA02741 hypothetical protein; Provisional

Probab=99.64  E-value=1.3e-15  Score=121.15  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCC-----CCCC------chhHHH-HHHcCC----HHHHHHHHhCCcCCCCCcc
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLP-----SIKV------RDGALH-AIQCDE----INILKLILDWQKCHKPESE   66 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~-----~~~~------g~t~L~-A~~~g~----~~~v~~Ll~~~~~~~~~~~   66 (256)
                      ..|..|+||||.|++.|+.++++.|++..     ++++      |+|||| |+..|+    .+++++|+++         
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~---------   86 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL---------   86 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc---------
Confidence            35788999999999999999999985421     2222      889999 999998    5899999998         


Q ss_pred             ccCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCcccc
Q psy4451          67 FKGHCNSNDFP-KCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        67 ~~~~~~~~~~~-~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~~  117 (256)
                        |.+.+.++. .|.||||+|+..++.+++++|++ .|++++..+..+.++..
T Consensus        87 --gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~  137 (169)
T PHA02741         87 --GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE  137 (169)
T ss_pred             --CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHH
Confidence              666777774 89999999999999999999997 59999987777777765

>KOG0514|consensus

Probab=99.63  E-value=2.6e-16  Score=133.87  Aligned_cols=105  Identities=26%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------------------------------------------ch
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------------------------------------------RD   37 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------------------------------------------g~   37 (256)
                      +.-|.+|+||||+|+.++|+++|+.||+.+-.++                                            |.
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQ  341 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQ  341 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcc
Confidence            4568999999999999999999999998842222                                            77


Q ss_pred             hHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCCcc
Q psy4451          38 GALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER-GHCIPYPHLPTCQC  115 (256)
Q Consensus        38 t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~-ga~i~~~~~~~~~~  115 (256)
                      |+|. |+.+|+.++|+.||..           |++.|.+|.+|.|+|++||++||.||+++||.. +.|+...+..+.+.
T Consensus       342 TALMLAVSHGr~d~vk~LLac-----------gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTA  410 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLAC-----------GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTA  410 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHc-----------cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchh
Confidence            8887 9999999999999998           888899999999999999999999999999965 56777666655555


Q ss_pred             cc
Q psy4451         116 VQ  117 (256)
Q Consensus       116 ~~  117 (256)
                      ..
T Consensus       411 l~  412 (452)
T KOG0514|consen  411 LS  412 (452)
T ss_pred             hh
Confidence            44

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.63  E-value=2.2e-15  Score=137.08  Aligned_cols=104  Identities=24%  Similarity=0.238  Sum_probs=92.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||.|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-----------g~~~n~  185 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK-----------GAYANV  185 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-----------CCCCCC
Confidence            35688999999999999999999999998 6654      789999 9999999999999999           666677


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..|.||||.|+..|+.+++++|++.|++++.....+.++..
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~  228 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLH  228 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH
Confidence            7889999999999999999999999999999877766666544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.63  E-value=7.8e-16  Score=120.54  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=56.1

Q ss_pred             cCCCCChHHHHHHHhCC-HHHHHH--HhcCCC-------CCCchhHHH-HHHcCCH---HHHHHHHhCCcCCCCCccccC
Q psy4451           4 LLFQGVSALQTAIIKND-VMMVKY--LLSLPS-------IKVRDGALH-AIQCDEI---NILKLILDWQKCHKPESEFKG   69 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~-~~~v~~--Ll~~~~-------~~~g~t~L~-A~~~g~~---~~v~~Ll~~~~~~~~~~~~~~   69 (256)
                      .|.+|.||||+|+++|+ .+....  .+....       -+.|+|||| |+..|+.   +++++|+++           |
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-----------g   81 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-----------G   81 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-----------C
Confidence            46667777777777766 244322  111100       112566666 6666654   345566666           4


Q ss_pred             CCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCcccc
Q psy4451          70 HCNSNDF-PKCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        70 ~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~~  117 (256)
                      .+.+.++ ..|.||||+|+..|+.+++++|++ .|++++.....+.++..
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            4445554 356666666666666666666665 36666655555555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.63  E-value=2.4e-15  Score=138.44  Aligned_cols=103  Identities=23%  Similarity=0.274  Sum_probs=86.0

Q ss_pred             ccCCC-CChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           3 YLLFQ-GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         3 ~~d~~-G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ..|.+ |+||||.|+.+|+.+++++|+++ |+++      |.|||| |+..|+.++++.|+++           |.+.+.
T Consensus       162 ~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-----------ga~in~  229 (477)
T PHA02878        162 MKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-----------GASTDA  229 (477)
T ss_pred             ccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-----------CCCCCC
Confidence            45667 99999999999999999999998 6665      789999 9999999999999999           666777


Q ss_pred             CCCCCCcHHHHHHHc-CcHHHHHHHHHCCCCCCCCCC-CCCcccc
Q psy4451          75 DFPKCITPLMLAAQL-GRLEIVALLLERGHCIPYPHL-PTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~-g~~eiv~~Ll~~ga~i~~~~~-~~~~~~~  117 (256)
                      ++..|.||||.|+.. ++.+++++|+++|++++.... .+.++..
T Consensus       230 ~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        230 RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            788888888888875 678888888888888886654 4555443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.62  E-value=3e-15  Score=138.17  Aligned_cols=118  Identities=15%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             cccCCCCChHHHHHHHhC---CHHHHHHHhcCCCCCC------chhHHH-HHHcCC---HHHHHHHHhCCcCCCCCc---
Q psy4451           2 FYLLFQGVSALQTAIIKN---DVMMVKYLLSLPSIKV------RDGALH-AIQCDE---INILKLILDWQKCHKPES---   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~---~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~---~~~v~~Ll~~~~~~~~~~---   65 (256)
                      ...|.+|+||||.|+.++   +.+++++|+++ |+++      |.|||| |+..|+   .+++++|+++|++.+...   
T Consensus       103 N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~  181 (489)
T PHA02798        103 NKKNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKE  181 (489)
T ss_pred             CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcC
Confidence            456777778888777765   56777777777 5654      667777 777766   777777777776542110   


Q ss_pred             -----c----------------------------------------------------------ccCCCCCCCCCCCCcH
Q psy4451          66 -----E----------------------------------------------------------FKGHCNSNDFPKCITP   82 (256)
Q Consensus        66 -----~----------------------------------------------------------~~~~~~~~~~~~g~Tp   82 (256)
                           +                                                          ..+.+.|.++..|.||
T Consensus       182 ~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TP  261 (489)
T PHA02798        182 KYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNP  261 (489)
T ss_pred             CCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccH
Confidence                 0                                                          0123566788899999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          83 LMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        83 L~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                      ||.|+..|+.+++++|++.|++++..+..+.+|...+.
T Consensus       262 L~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~  299 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAF  299 (489)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHH
Confidence            99999999999999999999999999999999887443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.61  E-value=3e-15  Score=137.61  Aligned_cols=117  Identities=20%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             cccCCCCChHHHHHHHhC--CHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc-------
Q psy4451           2 FYLLFQGVSALQTAIIKN--DVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES-------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~--~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~-------   65 (256)
                      ...|..|.||||.|+..+  +.+++++|+++ |+++      |.|||| |+..|+.+++++|+++|++.+...       
T Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  213 (480)
T PHA03100        135 NIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFT  213 (480)
T ss_pred             CccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHH
Confidence            346788889999999888  88889988888 6654      678888 888888888888888887654210       


Q ss_pred             -----------------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          66 -----------------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 -----------------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                                             ...|.+.+.++..|.||||.|+..|+.+++++|++.|++++..+..+.++...+
T Consensus       214 ~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        214 IFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             HHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence                                   013577788999999999999999999999999999999999988888887644

>KOG0195|consensus

Probab=99.61  E-value=1e-15  Score=126.87  Aligned_cols=108  Identities=22%  Similarity=0.148  Sum_probs=95.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +.-|..|-+|||+||..||..+|+.|++. |+.+      .+|||| |+.+||.++|+.|++.           .++.|+
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~-----------kadvna   95 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-----------KADVNA   95 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHH-----------hcccch
Confidence            34578899999999999999999999999 6554      469999 9999999999999998           778889


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQN  121 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~~  121 (256)
                      .++.|+||||+||..|...+.+=|+..|+.++.-...+-++.+.|+.
T Consensus        96 vnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            99999999999999999999999999999999777777766665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.61  E-value=6.8e-15  Score=121.10  Aligned_cols=114  Identities=20%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             ccCCCCChHHHHHHHhC--CHHHHHHHhcCCCCCC-------chhHHH-HHHc---CCHHHHHHHHhCCcCCCCCcc---
Q psy4451           3 YLLFQGVSALQTAIIKN--DVMMVKYLLSLPSIKV-------RDGALH-AIQC---DEINILKLILDWQKCHKPESE---   66 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~--~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~---g~~~~v~~Ll~~~~~~~~~~~---   66 (256)
                      ..|..|.||||.|+.++  +.+++++|+++ |+++       |.|||| |+..   ++.+++++|+++|++++....   
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~  124 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK  124 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCC
Confidence            45788999999999865  88999999998 5554       668998 7653   478999999998655431100   


Q ss_pred             ---------------------ccCCCCCCCCCCCCcHHHH-HHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          67 ---------------------FKGHCNSNDFPKCITPLML-AAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        67 ---------------------~~~~~~~~~~~~g~TpL~l-Aa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                           ..|.+.+.++..|.||||. |+..++.+++++|++.|++++..+..+.++.+
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYD  197 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence                                 0244455556666666664 33455666666666666666655555555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.60  E-value=7.9e-15  Score=120.71  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=81.9

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCC-C-CCchhHHH-HHHcC--CHHHHHHHHhCCcCCCCCccccCCCCCCCC-CC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPS-I-KVRDGALH-AIQCD--EINILKLILDWQKCHKPESEFKGHCNSNDF-PK   78 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~-~-~~g~t~L~-A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~   78 (256)
                      .+.+.||||.|+.+|+.+.|+.|++..+ . +.|.|||| |+..+  +.+++++|+++           |++.+..+ ..
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-----------gadvn~~~~~~   86 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-----------GADVNFKTRDN   86 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-----------CCCCCccCCCC
Confidence            3567999999999999999999998622 1 22889999 88754  89999999999           56666665 47


Q ss_pred             CCcHHHHHHHc---CcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          79 CITPLMLAAQL---GRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        79 g~TpL~lAa~~---g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |.||||+|+..   ++.+++++|+++|++++..+..+.++..
T Consensus        87 g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh  128 (209)
T PHA02859         87 NLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLH  128 (209)
T ss_pred             CCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            88999988753   4789999999999999988777766654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.60  E-value=9.1e-15  Score=133.02  Aligned_cols=114  Identities=20%  Similarity=0.155  Sum_probs=94.6

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ..+.+|.||||.|++.|+.++|++|+++ |+++      |.+||| |+..|+.+++++|+++|++.....          
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~  108 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK  108 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence            4577899999999999999999999998 6665      679999 999999999999999998753211          


Q ss_pred             --cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 --EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 --~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                        ...|.+.+.++..|.||||.|+..|+.+++++|++.|++++.++..+.++..
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh  162 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH  162 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence              1246677788888899999999999999999999999988877766666543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=6.2e-15  Score=136.27  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             cCCCCChHHHHHHHh--CCHHHHHHHhcCCCCCC-------chhHHH-HHHc----CCHHHHHHHHhCCcCCCCCcc---
Q psy4451           4 LLFQGVSALQTAIIK--NDVMMVKYLLSLPSIKV-------RDGALH-AIQC----DEINILKLILDWQKCHKPESE---   66 (256)
Q Consensus         4 ~d~~G~taLh~A~~~--~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~----g~~~~v~~Ll~~~~~~~~~~~---   66 (256)
                      .|..|+||||+|++.  ++.+++++|+++ |+++       |.|||| |+..    ++.+++++|+++|++.+....   
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~  219 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSE  219 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccc
Confidence            455666666666543  356666666666 4432       456665 5443    356666666666665432110   


Q ss_pred             ------------------------ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          67 ------------------------FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        67 ------------------------~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                                              ..+++.+.++..|.||||.|++.|+.+++++|+++|++++..+..+.++...+
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence                                    12345677888999999999999999999999999999999988888887633

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.58  E-value=1.6e-14  Score=124.17  Aligned_cols=102  Identities=22%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             cCCCCChH-HHHHHHhCCHHHHHHHhcCCCCCC----------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCC
Q psy4451           4 LLFQGVSA-LQTAIIKNDVMMVKYLLSLPSIKV----------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHC   71 (256)
Q Consensus         4 ~d~~G~ta-Lh~A~~~~~~~~v~~Ll~~~~~~~----------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~   71 (256)
                      .|.+|+|+ ||.|+..|+.+++++|+++ |+++          |.|||| |+..|+.+++++|+++           |++
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-----------GAD   95 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-----------GAD   95 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCC
Confidence            47778765 6777777899999999999 5543          679999 9999999999999999           666


Q ss_pred             CCCC-CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          72 NSND-FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        72 ~~~~-~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+.+ +..|.||||.|+..|+.+++++|++.|++++..+..+.++..
T Consensus        96 VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~  142 (300)
T PHA02884         96 VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIE  142 (300)
T ss_pred             cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            6664 457999999999999999999999999999988877777765

>PHA02741 hypothetical protein; Provisional

Probab=99.58  E-value=9.1e-15  Score=116.38  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             cccCCCCChHHHHHHHhCC----HHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccC
Q psy4451           2 FYLLFQGVSALQTAIIKND----VMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKG   69 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~----~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~   69 (256)
                      ...|..|+||||+|+.+|+    .+++++|+++ |+++       |+|||| |+..++.+++++|+++          .+
T Consensus        54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~----------~g  122 (169)
T PHA02741         54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQ----------PG  122 (169)
T ss_pred             hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhC----------CC
Confidence            3578899999999999999    5889999988 4442       789999 9999999999999974          15


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          70 HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        70 ~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .+.+..+..|.||||.|+..++.+++++|++.++.
T Consensus       123 ~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        123 IDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777888999999999999999999999988765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.57  E-value=1.7e-14  Score=130.27  Aligned_cols=113  Identities=19%  Similarity=0.338  Sum_probs=85.9

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCC-----C------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKP-----E------   64 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~-----~------   64 (256)
                      ..+.+|.||||.|+..|+.+++++|+++ |+++      +.+||| |+..|+.++++.|+++|++...     +      
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHL  108 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHH
Confidence            3466788999999999999999999888 5543      567888 8888888888888887654321     0      


Q ss_pred             ------------ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          65 ------------SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        65 ------------~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                                  ....|++.+..+..|.||||.|+..|+.+++++|+++|++++..+..+.++.
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL  172 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL  172 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence                        0013677777888888999999999999999999999888887777666654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.56  E-value=2.1e-14  Score=131.71  Aligned_cols=104  Identities=18%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             cccCCCCChHHHHHHHhC---CHHHHHHHhcCCCCCC------chhHHH-HHHcC-CHHHHHHHHhCCcCCCCCccccCC
Q psy4451           2 FYLLFQGVSALQTAIIKN---DVMMVKYLLSLPSIKV------RDGALH-AIQCD-EINILKLILDWQKCHKPESEFKGH   70 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~---~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~   70 (256)
                      ...|..|+||||.|+..+   +.+++++|+++ |+++      |.|||| |+..| +.+++++|+++           |.
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-----------ga  108 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA-----------GA  108 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-----------CC
Confidence            457889999999999999   99999999998 6665      889999 99999 59999999999           66


Q ss_pred             CCCCCCCCCCcHHHHHH--HcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          71 CNSNDFPKCITPLMLAA--QLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        71 ~~~~~~~~g~TpL~lAa--~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +.+.++..|.||||.|+  ..++.+++++|+++|++++..+..+.++..
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~  157 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA  157 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            67778888899999998  566888999999999998877776666543

>KOG0508|consensus

Probab=99.56  E-value=5.8e-15  Score=129.42  Aligned_cols=102  Identities=25%  Similarity=0.290  Sum_probs=85.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKG   69 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~   69 (256)
                      +.+|.|||..||++||.++|++|+++.++++              |.+||. |+..||.++|+.|+++           |
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-----------g  107 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-----------G  107 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-----------c
Confidence            4678999999999999999999999744544              557888 8899999999999999           5


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          70 HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        70 ~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ++.|.......|||--||..|+.|++|+|+++|+|++.++..+-+|..
T Consensus       108 a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLm  155 (615)
T KOG0508|consen  108 ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLM  155 (615)
T ss_pred             CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEE
Confidence            555555666678888888888888888888888888888888888764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.56  E-value=2.1e-14  Score=132.20  Aligned_cols=103  Identities=21%  Similarity=0.161  Sum_probs=89.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHc-CCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQC-DEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||.|+.+++.+++++|+++ |+++      |.|||| |+.. ++.+++++|+++           |++.+
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-----------gadvn  262 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEH-----------GVDVN  262 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-----------CCCCC
Confidence            45789999999999999999999999998 6665      889999 8865 789999999999           55566


Q ss_pred             CCCC-CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          74 NDFP-KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        74 ~~~~-~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      .++. .|.||||.|  .++.+++++|++.|++++..+..+.++...
T Consensus       263 ~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        263 AKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             ccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            5554 799999999  577899999999999999988888888763

>PHA02946 ankyin-like protein; Provisional

Probab=99.55  E-value=2.8e-14  Score=130.14  Aligned_cols=118  Identities=12%  Similarity=0.001  Sum_probs=95.1

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcC--CHHHHHHHHhCCcCCCCCc-------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCD--EINILKLILDWQKCHKPES-------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g--~~~~v~~Ll~~~~~~~~~~-------   65 (256)
                      ..+|.+|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..+  ..+++++|+++|++++...       
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            46789999999999999999999999999 6765      789999 87765  4799999999998765210       


Q ss_pred             ---------------cccCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          66 ---------------EFKGHCNSNDFPKCITPLMLAAQLG--RLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        66 ---------------~~~~~~~~~~~~~g~TpL~lAa~~g--~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                                     ...|.+.+.++..|.||||.|+..+  +.+++++|++.|++++..+..+.++...+.
T Consensus       145 L~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        145 LLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             HHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence                           0135667788888999999887644  468899999999999988888888877443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.54  E-value=2.9e-14  Score=113.12  Aligned_cols=104  Identities=12%  Similarity=0.053  Sum_probs=86.2

Q ss_pred             cccCCCCChHHHHHHHhCCH----HHHHHHhcCCCCCC------chhHHH-HHHcCCHHH---HHHHHhCCcCCCCCccc
Q psy4451           2 FYLLFQGVSALQTAIIKNDV----MMVKYLLSLPSIKV------RDGALH-AIQCDEINI---LKLILDWQKCHKPESEF   67 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~----~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~---v~~Ll~~~~~~~~~~~~   67 (256)
                      +.+|.++++++|.||+.|+.    ++++.|.++ +.++      |.|||| |+..|+.+.   +++|+++          
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~----------   82 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM----------   82 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc----------
Confidence            45788899999999999998    566677776 4332      889999 999988654   7899998          


Q ss_pred             cCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCcccc
Q psy4451          68 KGHCNSNDF-PKCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        68 ~~~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~~  117 (256)
                       |.+.+.++ ..|.||||+|+..|+.+++++|++ .|++++.....+.++..
T Consensus        83 -Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~  133 (166)
T PHA02743         83 -GADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYH  133 (166)
T ss_pred             -CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHH
Confidence             66677777 589999999999999999999995 79999988777777765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.53  E-value=4e-14  Score=130.18  Aligned_cols=96  Identities=29%  Similarity=0.441  Sum_probs=56.5

Q ss_pred             CCCCChHHHHHH--HhCCHHHHHHHhcCCCCCC------chhHHH-HHHcC--CHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           5 LFQGVSALQTAI--IKNDVMMVKYLLSLPSIKV------RDGALH-AIQCD--EINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         5 d~~G~taLh~A~--~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      |..|.||||.|+  ..|+.+++++|+++ |+++      |.|||| |+..|  +.++++.|+++           |.+.+
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-----------g~din  170 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-----------GVDIN  170 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-----------CCCcc
Confidence            444455555555  45555555555544 3332      444554 44444  45555555544           55556


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPT  112 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~  112 (256)
                      .++..|.||||.|+..|+.+++++|+++|++++.....+
T Consensus       171 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  209 (480)
T PHA03100        171 AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIET  209 (480)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence            666677788888888888888888888887777554433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.53  E-value=5.5e-14  Score=134.77  Aligned_cols=115  Identities=19%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             cccCCCCChHHHHHHHhC-CHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc--------
Q psy4451           2 FYLLFQGVSALQTAIIKN-DVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES--------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~-~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~--------   65 (256)
                      ...|..|+||||.|+..+ +.+++++|+++ |+++      |.|||| |+..|+.++++.|+++|++.+...        
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh  413 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALH  413 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHH
Confidence            346777888888888754 67777778777 5554      678887 888888888888888877654210        


Q ss_pred             ---------------cccCCCCCCCCCCCCcHHHHHHHcC-cHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 ---------------EFKGHCNSNDFPKCITPLMLAAQLG-RLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 ---------------~~~~~~~~~~~~~g~TpL~lAa~~g-~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                     ...|.+.+.++..|.||||+|+..| +.+++++|++.|++++..+..+.++..
T Consensus       414 ~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        414 FALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             HHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence                           0136788899999999999999977 689999999999999988887777765

>KOG0509|consensus

Probab=99.53  E-value=2.8e-14  Score=129.33  Aligned_cols=114  Identities=23%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------ccc
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------EFK   68 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~   68 (256)
                      ..|.||||+|+++|+..+|++|+++ |+|+      |-+|+| |++.|+..++-+++.++++++...          .++
T Consensus       110 ~l~stPLHWAar~G~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  110 VLGSTPLHWAARNGHISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CCCCCcchHHHHcCcHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence            4578999999999999999999999 8887      789999 999999999999999988654211          011


Q ss_pred             ------------CCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          69 ------------GHCNSNDF-PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        69 ------------~~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                                  +...+..| +.|+||||+|+..|+.++++++++.|++.+.++..+-+|.++.+
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHH
Confidence                        33344444 89999999999999999999778888999999888888887443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.53  E-value=1.4e-14  Score=113.34  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=82.6

Q ss_pred             cCCCCChHHHHHHHhCCH---HHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDV---MMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~---~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      +|.+|+||||+|+..|+.   +++++|+++ |+++       |+|||| |+..|+.+++++|+++          .+.+.
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~----------~g~d~  119 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQ----------PGVNM  119 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhC----------CCCCC
Confidence            478999999999999987   468899998 7776       679999 9999999999999974          26778


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      +.++..|.||||+|+..|+.+++++|+++|++.+
T Consensus       120 n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        120 EILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8999999999999999999999999999999865

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.52  E-value=5e-14  Score=133.93  Aligned_cols=112  Identities=16%  Similarity=0.083  Sum_probs=76.6

Q ss_pred             CCCCChHHHHHHHh--CCHHHHHHHhcCCCCCC------chhHHH-HHHcCC--HHHHHHHHhCCcCCCCCc--------
Q psy4451           5 LFQGVSALQTAIIK--NDVMMVKYLLSLPSIKV------RDGALH-AIQCDE--INILKLILDWQKCHKPES--------   65 (256)
Q Consensus         5 d~~G~taLh~A~~~--~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~--~~~v~~Ll~~~~~~~~~~--------   65 (256)
                      |..|+||||.|+.+  ++.+++++|+++ |+++      |.|||| |+..|+  .+++++|+++|++++...        
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh  252 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIM  252 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            55666666666543  456666666666 4444      556666 666663  366666666666543210        


Q ss_pred             ---------------------------------------------------cccCCCCCCCCCCCCcHHHHHHH--cCcH
Q psy4451          66 ---------------------------------------------------EFKGHCNSNDFPKCITPLMLAAQ--LGRL   92 (256)
Q Consensus        66 ---------------------------------------------------~~~~~~~~~~~~~g~TpL~lAa~--~g~~   92 (256)
                                                                         ...|++.+.++..|.||||.|+.  .++.
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc
Confidence                                                               01255667789999999999764  5689


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          93 EIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        93 eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |++++|++.|++++..+..+.++..
T Consensus       333 eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        333 DIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             hHHHHHHHcCCCCccCCCCCCCHHH
Confidence            9999999999999988887777764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.51  E-value=5.7e-14  Score=125.71  Aligned_cols=88  Identities=18%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCC
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCI   80 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~   80 (256)
                      |.|++|.|+++++.|++++|+++ |+++      |.|||| |+..|+.+++++|+++           |++.+.++..|.
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-----------GAdIN~~d~~G~  255 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN-----------GANVNAVMSNGY  255 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCcCCCCC
Confidence            56677777777777777777777 5554      677887 8888888888888877           778888999999


Q ss_pred             cHHHHHHHcC--------cHHHHHHHHHCCCCCCC
Q psy4451          81 TPLMLAAQLG--------RLEIVALLLERGHCIPY  107 (256)
Q Consensus        81 TpL~lAa~~g--------~~eiv~~Ll~~ga~i~~  107 (256)
                      ||||.|+..|        +.+++++|+++|++++.
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999998        46999999999998884

>KOG0508|consensus

Probab=99.50  E-value=2.5e-14  Score=125.48  Aligned_cols=102  Identities=25%  Similarity=0.226  Sum_probs=80.5

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC--------------
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPE--------------   64 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~--------------   64 (256)
                      .+|-+||-.|+..||+|+||.|+++ |+++      +.|||. ||-.|+.+++++|+++|+|..-.              
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK  160 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc
Confidence            3567788888888888888888887 5665      337887 77788888888888887765321              


Q ss_pred             --------ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          65 --------SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        65 --------~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                              ....|++.|.++..|+|+||.+|+.|+.|++++|+++|+.++..
T Consensus       161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeec
Confidence                    11248889999999999999999999999999999999988744

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.50  E-value=1.1e-13  Score=133.89  Aligned_cols=107  Identities=34%  Similarity=0.366  Sum_probs=78.9

Q ss_pred             CcccCCCCChHHH-HHHHhCCHHHHHHHhcCCC-CCCchhHHHHHHcCCHHHHHHHHhCCcCCCCCc---cccCCCCCCC
Q psy4451           1 MFYLLFQGVSALQ-TAIIKNDVMMVKYLLSLPS-IKVRDGALHAIQCDEINILKLILDWQKCHKPES---EFKGHCNSND   75 (256)
Q Consensus         1 ~~~~d~~G~taLh-~A~~~~~~~~v~~Ll~~~~-~~~g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~~~~~   75 (256)
                      +.|.|..|+|||| .|+.+++.+++++|++++. .+.|+||||++..++.+.++.++.+..+..+..   ..........
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~  124 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE  124 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence            3578999999999 8999999999999999832 456999999555566666665554432221110   0111122334


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCC
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPY  107 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~  107 (256)
                      +..|.||||+||.+|+.|++++|+++|++++.
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~  156 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPA  156 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Confidence            56799999999999999999999999999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512|consensus

Probab=99.50  E-value=5.5e-14  Score=108.61  Aligned_cols=93  Identities=22%  Similarity=0.135  Sum_probs=76.6

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +-.|.+|.||||-|+.+||.++|+.|+.. |+++      |+|||| ||.=++.+++..|+++           |+++|+
T Consensus        91 NtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqh-----------gaDVnA  158 (228)
T KOG0512|consen   91 NTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQH-----------GADVNA  158 (228)
T ss_pred             cccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchhHHHHHHhc-----------cCcccc
Confidence            45799999999999999999999999988 6665      999999 9999999999999999           666777


Q ss_pred             CCCCCCcHHHHHHHcCcH-HHHHHHHH-CCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRL-EIVALLLE-RGHCIP  106 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~-eiv~~Ll~-~ga~i~  106 (256)
                      ......||||+||...+. ..+++|+. .+.+..
T Consensus       159 ~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg  192 (228)
T KOG0512|consen  159 QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG  192 (228)
T ss_pred             cccccchhhHHhhcccchHHHHHHHhhccccChh
Confidence            777789999999986654 55666653 344443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.49  E-value=1.4e-13  Score=118.45  Aligned_cols=84  Identities=17%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      |..|.||||+|+..++.+++++|+++ |+++       |.|||| |+..|+.+++++|+++           |++.+.++
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~-----------GAdin~kd  134 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAKITPLYISVLHGCLKCLEILLSY-----------GADINIQT  134 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCCC
Confidence            56899999999999999999999999 6554       679999 9999999999999999           77788888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHH
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~  100 (256)
                      ..|.||||+|++.++.+++.++..
T Consensus       135 ~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        135 NDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             CCCCCHHHHHHHhCChhHHHHhcC
Confidence            999999999999999988766653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.4e-13  Score=126.13  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=92.5

Q ss_pred             cccCCCCChHHHHHHHhC--CHHHHHHHhcCCCCCC------chhHHH-HHH--cCCHHHHHHHHhCCcCCCCCc-----
Q psy4451           2 FYLLFQGVSALQTAIIKN--DVMMVKYLLSLPSIKV------RDGALH-AIQ--CDEINILKLILDWQKCHKPES-----   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~--~~~~v~~Ll~~~~~~~------g~t~L~-A~~--~g~~~~v~~Ll~~~~~~~~~~-----   65 (256)
                      ...|..|+||||.|+..+  +.+++++|+++ |+++      |.|||| |+.  .++.++++.|+++|++.+...     
T Consensus       146 ~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~-g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~t  224 (471)
T PHA03095        146 NALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT  224 (471)
T ss_pred             CccCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCC
Confidence            346788888888888766  57888888888 5554      778887 664  467788888888877654210     


Q ss_pred             -------------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          66 -------------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 -------------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                                         ...|.+.+.++..|.||||+|+..|+.+++++|++.|++++..+..+.++...+
T Consensus       225 pLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A  297 (471)
T PHA03095        225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM  297 (471)
T ss_pred             HHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence                               114678888999999999999999999999999999999999988888887633

>PHA02798 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.2e-13  Score=127.49  Aligned_cols=96  Identities=22%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             cccCCCCChHHHHHHHh-----CCHHHHHHHhcCCCCCC------chhHHH-HHHcC---CHHHHHHHHhCCcCCCCCcc
Q psy4451           2 FYLLFQGVSALQTAIIK-----NDVMMVKYLLSLPSIKV------RDGALH-AIQCD---EINILKLILDWQKCHKPESE   66 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~-----~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g---~~~~v~~Ll~~~~~~~~~~~   66 (256)
                      ...|..|.||||.|+.+     ++.+++++|+++ |+++      |.|||| |+..+   +.+++++|+++         
T Consensus        65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~---------  134 (489)
T PHA02798         65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGYINNLEILLFMIEN---------  134 (489)
T ss_pred             CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc---------
Confidence            45788999999999875     678999999999 7765      889999 88765   78999999999         


Q ss_pred             ccCCCCCCCCCCCCcHHHHHHHcCc---HHHHHHHHHCCCCCCCCC
Q psy4451          67 FKGHCNSNDFPKCITPLMLAAQLGR---LEIVALLLERGHCIPYPH  109 (256)
Q Consensus        67 ~~~~~~~~~~~~g~TpL~lAa~~g~---~eiv~~Ll~~ga~i~~~~  109 (256)
                        |++.+..+..|.||||.|++.++   .+++++|+++|++++...
T Consensus       135 --Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~  178 (489)
T PHA02798        135 --GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN  178 (489)
T ss_pred             --CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence              77788889999999999999988   999999999999998654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=4.5e-13  Score=99.47  Aligned_cols=103  Identities=27%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCC------CchhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIK------VRDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|.||||.|+..++.++++.|+++ +.+      .|.+|+| |+..++.++++.|+++           +.+.+..
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-----------~~~~~~~   69 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-----------GADVNAR   69 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHc-----------CCCcccc
Confidence            3578899999999999999999999998 443      1789999 9999999999999998           4455566


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..|.||+|.|+..++.+++++|+++|.+++.....+++..+
T Consensus        70 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~  111 (126)
T cd00204          70 DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH  111 (126)
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            678899999999999999999999999888888777776655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.48  E-value=2e-13  Score=129.81  Aligned_cols=101  Identities=18%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             HHhCCHHHHHHHhcCCC-CCC-------chhHHH-HHH--cCCHHHHHHHHhCCcCCCCCc-------------------
Q psy4451          16 IIKNDVMMVKYLLSLPS-IKV-------RDGALH-AIQ--CDEINILKLILDWQKCHKPES-------------------   65 (256)
Q Consensus        16 ~~~~~~~~v~~Ll~~~~-~~~-------g~t~L~-A~~--~g~~~~v~~Ll~~~~~~~~~~-------------------   65 (256)
                      .+.++.+++++|+++ | +++       |.|||| |+.  .++.+++++|+++|++++...                   
T Consensus       150 ~~~v~leiVk~LLe~-G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        150 TRGIDLDLIKYMVDV-GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             ccCCCHHHHHHHHHC-CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            456899999999999 5 543       789999 654  467899999999998765310                   


Q ss_pred             -----cccCCCCCCCCCCCCcHHHHH-------------------------------------HHcCcHHHHHHHHHCCC
Q psy4451          66 -----EFKGHCNSNDFPKCITPLMLA-------------------------------------AQLGRLEIVALLLERGH  103 (256)
Q Consensus        66 -----~~~~~~~~~~~~~g~TpL~lA-------------------------------------a~~g~~eiv~~Ll~~ga  103 (256)
                           -..|++.+.++..|.||||.|                                     |+.|+.+++++|++.|+
T Consensus       229 IVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence                 014788889999999999964                                     45678899999999999


Q ss_pred             CCCCCCCCCCcccc
Q psy4451         104 CIPYPHLPTCQCVQ  117 (256)
Q Consensus       104 ~i~~~~~~~~~~~~  117 (256)
                      +++..+..+.++..
T Consensus       309 dIN~kD~~G~TPLH  322 (764)
T PHA02716        309 KLHYKDSAGRTCLH  322 (764)
T ss_pred             ceeccCCCCCCHHH
Confidence            99988877777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.47  E-value=3.8e-13  Score=128.97  Aligned_cols=113  Identities=23%  Similarity=0.187  Sum_probs=81.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      ...|.+|.||||+|+.+|+.++|++|+++ |+++      |.+|+| |+..|+.++++.|++++++.....         
T Consensus       172 n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~  250 (682)
T PHA02876        172 NAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRN  250 (682)
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHc
Confidence            46788999999999999999999999999 6765      779999 999999999999988766543210         


Q ss_pred             ---------cccCCCCCCCCCCCCcHHHHHHHcCcH-HHHHHHHHCCCCCCCCCCCCCcc
Q psy4451          66 ---------EFKGHCNSNDFPKCITPLMLAAQLGRL-EIVALLLERGHCIPYPHLPTCQC  115 (256)
Q Consensus        66 ---------~~~~~~~~~~~~~g~TpL~lAa~~g~~-eiv~~Ll~~ga~i~~~~~~~~~~  115 (256)
                               ...|.+.+..+..|.||||.|+..++. +++++|++.|++++..+..+.++
T Consensus       251 ~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~Tp  310 (682)
T PHA02876        251 EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETP  310 (682)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence                     013445555666666677766666664 46666666666666555444443

>PHA02946 ankyin-like protein; Provisional

Probab=99.46  E-value=3.7e-13  Score=122.74  Aligned_cols=115  Identities=17%  Similarity=0.055  Sum_probs=95.7

Q ss_pred             cccCCCCChHHHHHHHhCC--HHHHHHHhcCCCCCC-------chhHHHHHHcCCHHHHHHHHhCCcCCCCCc-------
Q psy4451           2 FYLLFQGVSALQTAIIKND--VMMVKYLLSLPSIKV-------RDGALHAIQCDEINILKLILDWQKCHKPES-------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~--~~~v~~Ll~~~~~~~-------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~-------   65 (256)
                      ...|.+|+||||+|+..++  .+++++|+++ |+++       |.|||||+..|+.++++.|+++|++.+...       
T Consensus        99 n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~-Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~L  177 (446)
T PHA02946         99 NACDKQHKTPLYYLSGTDDEVIERINLLVQY-GAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHI  177 (446)
T ss_pred             CCCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHH
Confidence            4578999999999998764  7999999998 5554       678999888899999999999988653210       


Q ss_pred             -----------------cccCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          66 -----------------EFKGHCNSNDFPKCITPLMLAAQLG--RLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        66 -----------------~~~~~~~~~~~~~g~TpL~lAa~~g--~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                                       ...|++.+.+|..|.||||+|+..|  +.+++++|++ |++++..+..+.++...
T Consensus       178 h~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~  248 (446)
T PHA02946        178 HRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTL  248 (446)
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence                             0147788899999999999999986  8899999985 99999999888888763

>KOG0512|consensus

Probab=99.46  E-value=2.3e-13  Score=105.22  Aligned_cols=95  Identities=23%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             HHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcH
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITP   82 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~Tp   82 (256)
                      -+..|++.+..+.|+.||+. .++.       |.|||| |+.+|+.+|++.|+..           |++.+++...|+||
T Consensus        66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-----------gAn~~a~T~~GWTP  133 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-----------GANKEAKTNEGWTP  133 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHc-----------cCCcccccccCccc
Confidence            36889999999999999987 3332       779999 9999999999999998           77788888999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          83 LMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        83 L~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ||.||..++.+++..|+++|+|++.......++..
T Consensus       134 LhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLh  168 (228)
T KOG0512|consen  134 LHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLH  168 (228)
T ss_pred             hhhhhcccchhHHHHHHhccCcccccccccchhhH
Confidence            99999999999999999999999966655555443

>KOG4177|consensus

Probab=99.45  E-value=1.9e-13  Score=132.86  Aligned_cols=104  Identities=26%  Similarity=0.320  Sum_probs=85.0

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCC--------------------------------CCCC------chhHHH-HH
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLP--------------------------------SIKV------RDGALH-AI   43 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~--------------------------------~~~~------g~t~L~-A~   43 (256)
                      .+-+.|-||||.|+..||.++++.|++..                                |++.      +.|||| |+
T Consensus       469 ~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  469 AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV  548 (1143)
T ss_pred             hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence            34567888888888888888888888752                                1111      568999 99


Q ss_pred             HcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          44 QCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        44 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..|+.++|++|+++           |++.+.+++.|.||||.||+.|+.+++++|+++|++++..+..+-++..
T Consensus       549 ~~g~v~~VkfLLe~-----------gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~  611 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLEH-----------GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLH  611 (1143)
T ss_pred             hcCCchHHHHhhhC-----------CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhH
Confidence            99999999999999           7778888899999999999999999999999999999977666665543

>KOG3614|consensus

Probab=99.44  E-value=6.7e-14  Score=135.40  Aligned_cols=94  Identities=22%  Similarity=0.427  Sum_probs=83.6

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSY  219 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~  219 (256)
                      ..+.||.++||..|.+.+.+|++++++|+....           ..        ..++.++|+.++++++|++.|+.+|+
T Consensus       854 kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~-----------~~--------~~GRvIl~~d~i~~t~rLl~~f~V~~  914 (1381)
T KOG3614|consen  854 KVRVYFADFWNLIDLLAILLFLVGPVLRLLPID-----------SI--------YSGRVILCFDFILFTLRLLHYFTVSK  914 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhheeEecCcc-----------ce--------ecceeeeeehHHHHHHHHhhheeecc
Confidence            567799999999999999999999999964411           11        11348999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4451         220 DLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVG  252 (256)
Q Consensus       220 ~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~  252 (256)
                      .+||.++|++||++|++.|+++++|+++||||+
T Consensus       915 ~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVa  947 (1381)
T KOG3614|consen  915 QLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVA  947 (1381)
T ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999997

>KOG4214|consensus

Probab=99.43  E-value=5.9e-13  Score=92.54  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=83.9

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC-----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcH
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV-----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITP   82 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~-----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~Tp   82 (256)
                      .-...+++.+|..+-||..... +.++     |.+||| |+..|+.+++++|+..           |++++.+|+-|.||
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~-g~nVn~~~ggR~plhyAAD~GQl~ilefli~i-----------GA~i~~kDKygITP   70 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE-GLNVNEIYGGRTPLHYAADYGQLSILEFLISI-----------GANIQDKDKYGITP   70 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc-cccHHHHhCCcccchHhhhcchHHHHHHHHHh-----------ccccCCccccCCcH
Confidence            3457889999999999988877 5554     789999 9999999999999998           77888899999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          83 LMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        83 L~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |..|...||.++|++|+++|++-......+.+..+
T Consensus        71 LLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            99999999999999999999987766555555555

>KOG0507|consensus

Probab=99.43  E-value=1.3e-13  Score=126.94  Aligned_cols=107  Identities=23%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCC-CCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLP-SIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~-~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +.|-|+.|-|+||.|+.+|+.+++++|+++. -.++    |..|+| |+++|+.+++++++.+           +...|.
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q-----------~d~~na  110 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ-----------TDILNA  110 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhc-----------ccCCCc
Confidence            3578999999999999999999999999982 1232    778999 9999999999999998           566778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      .+-.|.||||+||++|++|++.+|+++|+|....+...-+|.++
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldl  154 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDL  154 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence            88889999999999999999999999999999888877777663

>PHA02917 ankyrin-like protein; Provisional

Probab=99.43  E-value=6.7e-13  Score=126.01  Aligned_cols=105  Identities=18%  Similarity=0.101  Sum_probs=82.7

Q ss_pred             ccCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC------chhHHH-HHHcCCH----HHHHHHHhCCc--CCCCC--
Q psy4451           3 YLLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV------RDGALH-AIQCDEI----NILKLILDWQK--CHKPE--   64 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~----~~v~~Ll~~~~--~~~~~--   64 (256)
                      .+|.+|+||||+|+.+   |+.++|++|+++ |+++      |.|||| |+..|+.    ++++.|++++.  +.++.  
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            3588999999998665   889999999998 7765      789999 9998884    45678877543  22211  


Q ss_pred             ----------------ccccCCCCCCCCCCCCcHHHHH--HHcCcHHHHHHHHHCCCCCCCC
Q psy4451          65 ----------------SEFKGHCNSNDFPKCITPLMLA--AQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        65 ----------------~~~~~~~~~~~~~~g~TpL~lA--a~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                                      .-..|++.+.++..|.||||.|  +..|+.|++++|+++|++++..
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~  167 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE  167 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence                            0125889999999999999965  3578999999999999999744

>KOG4177|consensus

Probab=99.41  E-value=4.4e-13  Score=130.43  Aligned_cols=90  Identities=30%  Similarity=0.337  Sum_probs=84.5

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      .++.+|.||||.||..|+.++||+||++ |+++      |.|||| |+..|+.+++++|+++           |++.|..
T Consensus       535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-----------GA~vna~  602 (1143)
T KOG4177|consen  535 LRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH-----------GASVNAA  602 (1143)
T ss_pred             hhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHHHHHHc-----------CCCCCcc
Confidence            4577889999999999999999999999 6765      889999 9999999999999999           7788889


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      +.+|.|||+.|+..|++++++.|+..|++
T Consensus       603 d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  603 DLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             cccCcchhHHHHHhcccchhhHHHhccCc
Confidence            99999999999999999999999999988

>PHA02730 ankyrin-like protein; Provisional

Probab=99.41  E-value=1.2e-12  Score=122.69  Aligned_cols=94  Identities=16%  Similarity=0.088  Sum_probs=77.6

Q ss_pred             ccCCCCChHHHHHHHhC---CHHHHHHHhcCCCCCC------chhHHH-HHHcC--CHHHHHHHHhCCcCCCCCccccCC
Q psy4451           3 YLLFQGVSALQTAIIKN---DVMMVKYLLSLPSIKV------RDGALH-AIQCD--EINILKLILDWQKCHKPESEFKGH   70 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~---~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~   70 (256)
                      ..|..|+||||+|+.+|   +.|+|++|+++ |+++      |+|||| |+..+  +.|++++|+++|+         ++
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~---------~~  105 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS---------NA  105 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC---------CC
Confidence            46788999999999997   59999999999 7876      899999 88866  7999999999965         33


Q ss_pred             CCCCCCCCCCcHHHHHHH--cCcHHHHHHHHH-CCCCCC
Q psy4451          71 CNSNDFPKCITPLMLAAQ--LGRLEIVALLLE-RGHCIP  106 (256)
Q Consensus        71 ~~~~~~~~g~TpL~lAa~--~g~~eiv~~Ll~-~ga~i~  106 (256)
                      +.+..+..+.||++.++.  .++.|++++|++ .|++++
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~  144 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS  144 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChh
Confidence            445566667889998887  888899999986 555655

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.40  E-value=1.6e-12  Score=120.17  Aligned_cols=96  Identities=23%  Similarity=0.363  Sum_probs=52.2

Q ss_pred             ccCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC-------chhHHH-HHH--cCCHHHHHHHHhCCcCCCCCccccC
Q psy4451           3 YLLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV-------RDGALH-AIQ--CDEINILKLILDWQKCHKPESEFKG   69 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~   69 (256)
                      ..|.+|.||||.|+.+   ++.|++++|+++ |+++       |.|||| |+.  .++.+++++|+++           |
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-----------G  170 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF-----------G  170 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc-----------C
Confidence            3455566666655543   345666666655 4433       445665 433  2455666666665           3


Q ss_pred             CCCCC-CCCCCCcHHHHHHHcC----cHHHHHHHHHCCCCCCCCCC
Q psy4451          70 HCNSN-DFPKCITPLMLAAQLG----RLEIVALLLERGHCIPYPHL  110 (256)
Q Consensus        70 ~~~~~-~~~~g~TpL~lAa~~g----~~eiv~~Ll~~ga~i~~~~~  110 (256)
                      ++.+. .+..|.||||.|++.+    +.+++++|+++|++++.++.
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            33333 3445666666665443    56666666666666665443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.40  E-value=1.4e-12  Score=127.43  Aligned_cols=100  Identities=18%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      .++.++||.||..|+.++++.|++. |+++      |.|||| |+.+|+.++++.|+++|+           +.+.+|.+
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-----------din~~d~~  590 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC-----------NVHIRDAN  590 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC-----------CCCCcCCC
Confidence            3567899999999999999999998 6655      889999 999999999999999954           44455555


Q ss_pred             CCcHHH-------------------------------HHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          79 CITPLM-------------------------------LAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        79 g~TpL~-------------------------------lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |.||||                               .||..|+.++++.|+++|++++.++..+.++..
T Consensus       591 G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        591 GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            555555                               555556666666667777777766666655543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.38  E-value=1.8e-12  Score=123.09  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             cccCCCCChHHHHHH--HhCCHHHHHHHhcCCCCCC---------c-----------hhHHH-HHH-----------cCC
Q psy4451           2 FYLLFQGVSALQTAI--IKNDVMMVKYLLSLPSIKV---------R-----------DGALH-AIQ-----------CDE   47 (256)
Q Consensus         2 ~~~d~~G~taLh~A~--~~~~~~~v~~Ll~~~~~~~---------g-----------~t~L~-A~~-----------~g~   47 (256)
                      ...|.+|+||||.|+  .+|+.|++++|+++ |+++         |           .|||| |+.           .++
T Consensus       130 n~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~  208 (661)
T PHA02917        130 SVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVR  208 (661)
T ss_pred             CccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCccccccccccccccccccccccccHHHHHHhhcccccccccccCc
Confidence            346778888888543  46788888888887 5654         1           37887 654           357


Q ss_pred             HHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcH--HHHHHHHHCCCCCCC
Q psy4451          48 INILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRL--EIVALLLERGHCIPY  107 (256)
Q Consensus        48 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~--eiv~~Ll~~ga~i~~  107 (256)
                      .+++++|+++           |++.+.++..|.||||+|++.|+.  |++++|++ |++++.
T Consensus       209 ~eiv~~Li~~-----------Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        209 PEVVKCLINH-----------GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             HHHHHHHHHC-----------CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence            7888888888           778889999999999999999985  89999975 887753

>KOG0510|consensus

Probab=99.34  E-value=2.2e-12  Score=119.77  Aligned_cols=102  Identities=24%  Similarity=0.241  Sum_probs=94.0

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|+||||.|++.+..+.++.|++. |++.      +.+|+| |+..|+.++.+.|+++           +.+.|..
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-----------~~dvnl~  150 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-----------GADVNLE  150 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChhhhhccCchhhccccchHHHHHHHHHh-----------cCCcccc
Confidence            4688999999999999999999999999 7776      679999 9999999999999999           7788899


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      ++.|.||||+||.+++.|..+.|++.|+++.+++..+|...
T Consensus       151 de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~i  191 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPI  191 (929)
T ss_pred             ccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchH
Confidence            99999999999999999988999999999999988777763

>PHA02730 ankyrin-like protein; Provisional

Probab=99.33  E-value=7e-12  Score=117.52  Aligned_cols=94  Identities=13%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             CCCCChHHHHHHHhCC----HHHHHHHhcCCCC--CC------chhHHH-H--HH-cC---------CHHHHHHHHhCCc
Q psy4451           5 LFQGVSALQTAIIKND----VMMVKYLLSLPSI--KV------RDGALH-A--IQ-CD---------EINILKLILDWQK   59 (256)
Q Consensus         5 d~~G~taLh~A~~~~~----~~~v~~Ll~~~~~--~~------g~t~L~-A--~~-~g---------~~~~v~~Ll~~~~   59 (256)
                      +..|.||||.|+.+++    .|++++|+++ |+  ++      |.|||| +  +. .+         ..+++++|+++  
T Consensus       375 k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~--  451 (672)
T PHA02730        375 TTDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY--  451 (672)
T ss_pred             CCCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc--
Confidence            3689999999999885    8999999999 44  22      789997 2  22 21         23569999999  


Q ss_pred             CCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC
Q psy4451          60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHL  110 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~  110 (256)
                               |++.+.++..|.||||+|+..++.+++++|+++|++++..+.
T Consensus       452 ---------GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        452 ---------MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             ---------ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                     788889999999999999999999999999999999997774

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=4.2e-12  Score=81.45  Aligned_cols=53  Identities=34%  Similarity=0.475  Sum_probs=42.6

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL   99 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll   99 (256)
                      |.||+| |+..|+.++++.|+++           +.+.+.+|.+|.||||.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-----------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-----------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-----------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-----------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578998 9999999999999998           6777888999999999999999999999986

...

>KOG0505|consensus

Probab=99.32  E-value=1.9e-12  Score=115.34  Aligned_cols=57  Identities=28%  Similarity=0.449  Sum_probs=51.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKC   60 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~   60 (256)
                      ..+.+|.|+||-||.-.|.+||++|+++ |+++      ++||+| |+..||..++++|+++|++
T Consensus        68 ~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen   68 LCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             ccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhhh
Confidence            4578899999999999999999999999 6665      889999 9999999999999999874

>KOG0515|consensus

Probab=99.27  E-value=9.5e-12  Score=110.65  Aligned_cols=84  Identities=23%  Similarity=0.295  Sum_probs=75.9

Q ss_pred             HHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHH
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPL   83 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL   83 (256)
                      .|.-|+..|.+|+|+..+.. --|+      |-|+|| |++.||.+||++|++.           |++.|+.|.+|+|||
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~-----------ganVNa~DSdGWTPL  620 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEF-----------GANVNAADSDGWTPL  620 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhc-----------CCcccCccCCCCchh
Confidence            35778999999999998876 2232      789999 9999999999999999           888999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          84 MLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        84 ~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      |+||.+++..+++.|++.|+-+.
T Consensus       621 HCAASCNnv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  621 HCAASCNNVPMCKQLVESGAAVF  643 (752)
T ss_pred             hhhhhcCchHHHHHHHhccceEE
Confidence            99999999999999999999776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.26  E-value=3.4e-11  Score=114.85  Aligned_cols=93  Identities=22%  Similarity=0.209  Sum_probs=81.5

Q ss_pred             HHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHH
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPL   83 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL   83 (256)
                      +|+.|+.+|+.+.++.|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.++..|.|||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-----------Gadvn~~d~~G~TpL  152 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEF-----------GADPTLLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC-----------CCCCCCCCCCCCCHH
Confidence            58899999999999999998 6655      789999 9999999999999999           777788899999999


Q ss_pred             HHHHHcCcHHHHHHHHHC-------CCCCCCCCCCCCcc
Q psy4451          84 MLAAQLGRLEIVALLLER-------GHCIPYPHLPTCQC  115 (256)
Q Consensus        84 ~lAa~~g~~eiv~~Ll~~-------ga~i~~~~~~~~~~  115 (256)
                      |+|+..|+.+++++|+++       |++.+..+..+.+.
T Consensus       153 h~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~  191 (664)
T PTZ00322        153 ELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPP  191 (664)
T ss_pred             HHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCc
Confidence            999999999999999998       77776655544433

>KOG3676|consensus

Probab=99.24  E-value=2.3e-10  Score=106.70  Aligned_cols=114  Identities=23%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             CCCChHHHHHHHh---CCHHHHHHHhcC-CC-C-CC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccc---c
Q psy4451           6 FQGVSALQTAIIK---NDVMMVKYLLSL-PS-I-KV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEF---K   68 (256)
Q Consensus         6 ~~G~taLh~A~~~---~~~~~v~~Ll~~-~~-~-~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~---~   68 (256)
                      ..|+|.||.|..+   ++-++++.|++. ++ + ++       |.|+|| |+.+.+.++|++|++.|||++....-   .
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~  220 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC  220 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence            3589999999984   355899999986 21 1 11       899999 99999999999999999998754321   0


Q ss_pred             CCCC---------CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          69 GHCN---------SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        69 ~~~~---------~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      ..+.         ....--|..||..||..++.|++++|+++|||++..+..+.+...+|
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~l  280 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHML  280 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHH
Confidence            0111         01123478999999999999999999999999999988887765433

>PHA02792 ankyrin-like protein; Provisional

Probab=99.23  E-value=5.2e-11  Score=110.72  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC--------chhHHH-HHHcCCH---HHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV--------RDGALH-AIQCDEI---NILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------g~t~L~-A~~~g~~---~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      +.++++.|+.+|+.++|++|+++ |+++        +.|||| |...+..   ++++.|+++           |++.+.+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-----------GADIN~k  406 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-----------IDDINKI  406 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-----------CCccccc
Confidence            55679999999999999999999 7776        248999 5555544   357888998           7778889


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      +..|.||||.|+..++.+++++|+++|++++..+..+.+|...+
T Consensus       407 D~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        407 DKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999999999988888887744

>KOG0514|consensus

Probab=99.23  E-value=2.5e-11  Score=103.81  Aligned_cols=84  Identities=31%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      ..|+|||++|+.+|+.++||.||.- |+|+      |.|+|. |+.+||.|++++||..          .+++.+..|.+
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~----------p~cd~sLtD~D  406 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV----------PSCDISLTDVD  406 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHHhcc----------CcccceeecCC
Confidence            4599999999999999999999988 6665      778887 9999999999999988          58899999999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHH
Q psy4451          79 CITPLMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~  100 (256)
                      |.|+|..|-+.||.||.-+|..
T Consensus       407 gSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  407 GSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CchhhhhHHhcCchHHHHHHHH
Confidence            9999999999999999888864

>PLN03223 Polycystin cation channel protein; Provisional

Probab=99.18  E-value=9e-11  Score=114.22  Aligned_cols=111  Identities=18%  Similarity=0.306  Sum_probs=80.6

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------h--hc--cccccccc------ccCCCC-----------
Q psy4451         141 SKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSV--------R--LY--DQQDLERK------YWHFLD-----------  191 (256)
Q Consensus       141 ~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~--------~--~~--~~~~~~~~------~~~~~~-----------  191 (256)
                      ...||++.|||+|++.+.+.+++++++++.....        +  .+  ........      .+....           
T Consensus      1207 ~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~ 1286 (1634)
T PLN03223       1207 YLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVD 1286 (1634)
T ss_pred             hhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHH
Confidence            3689999999999999999999999876421110        0  00  00000000      011100           


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         192 PTLVAESLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~rll~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      .......+.++.++++++|+++++++||+++.+..+++++++|++.|+++|++++++|++
T Consensus      1287 ~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAq 1346 (1634)
T PLN03223       1287 YFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAF 1346 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011123467888999999999999999999999999999999999999999999999984

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.15  E-value=8e-11  Score=75.43  Aligned_cols=47  Identities=30%  Similarity=0.445  Sum_probs=40.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHH
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLIL   55 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll   55 (256)
                      |+||||.|++.|+.|++++|+++ ++++      |.||+| |+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999 6765      889999 99999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.14  E-value=4.6e-10  Score=91.55  Aligned_cols=104  Identities=31%  Similarity=0.271  Sum_probs=88.8

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCC-----HHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDE-----INILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      +..+.+++|.|+..+..+.++++++. ++++      |.||+| |+..++     .++++.|+++|++        ....
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~--------~~~~  140 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--------LDVN  140 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC--------CCCc
Confidence            45588999999999999999999988 6655      889999 999999     9999999999431        1256


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +.++..|.||+|+|+..|+.++++.|++.|++++.....+.++..
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~  185 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD  185 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchh
Confidence            677999999999999999999999999999999987666665554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.13  E-value=5.3e-10  Score=82.73  Aligned_cols=85  Identities=33%  Similarity=0.395  Sum_probs=75.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|.||+|.|+..++.++++.|+++ +.++      +.+|+| |+..++.++++.|+++           +.+.+..
T Consensus        35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-----------~~~~~~~  102 (126)
T cd00204          35 AKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-----------GADVNAR  102 (126)
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHc-----------CCCCccc
Confidence            4678999999999999999999999998 4322      779999 9999999999999998           5566677


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHH
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLL   99 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll   99 (256)
                      +..|.||++.|...++.+++++|+
T Consensus       103 ~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         103 DKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCCCHHHHHHhcCCHHHHHHhC
Confidence            788999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.13  E-value=2.4e-10  Score=106.34  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             cCCCCChHHHHH-HHhCCHHHHHHHhcCCCCCC------chhHHH-HH-HcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           4 LLFQGVSALQTA-IIKNDVMMVKYLLSLPSIKV------RDGALH-AI-QCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         4 ~d~~G~taLh~A-~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~-~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      .+.+|.+++|+- ..+|+.|+|++|+++ |+++      +++|+| |+ ..+++|++++|+++|++.....         
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            567788898765 557799999999999 7877      568888 74 5799999999999998743210         


Q ss_pred             -----c---c--------cCCCCCCCCCCCCcHHHHHHHcC-------cHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 -----E---F--------KGHCNSNDFPKCITPLMLAAQLG-------RLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 -----~---~--------~~~~~~~~~~~g~TpL~lAa~~g-------~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                           +   +        .+-..|.++..|.||||+|+..+       +.|++++|+++|++++..+..++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence                 0   0        02244677888999999999999       899999999999999977776776644

>KOG0505|consensus

Probab=99.12  E-value=1.7e-10  Score=103.07  Aligned_cols=120  Identities=18%  Similarity=0.102  Sum_probs=80.2

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhH------------HH-HHHcCCHH------------
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGA------------LH-AIQCDEIN------------   49 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~------------L~-A~~~g~~~------------   49 (256)
                      |+.-|..|+||||-|+..||..++++|+++ |++.      |+.|            +- +......+            
T Consensus        99 Vn~~d~e~wtPlhaaascg~~~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m  177 (527)
T KOG0505|consen   99 VNAQDNEGWTPLHAAASCGYLNIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM  177 (527)
T ss_pred             ccccccccCCcchhhcccccHHHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH
Confidence            345688999999999999999999999999 5443      1111            11 11111111            


Q ss_pred             --HHHHHHhCCcCCCCC----------------------ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy4451          50 --ILKLILDWQKCHKPE----------------------SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI  105 (256)
Q Consensus        50 --~v~~Ll~~~~~~~~~----------------------~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i  105 (256)
                        =++..+..|.+....                      +...|.+.+.+|.+|+||||-||..|+.+++++|+++|+++
T Consensus       178 l~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  178 LDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM  257 (527)
T ss_pred             HHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence              111223334332111                      11246677888999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccc
Q psy4451         106 PYPHLPTCQCVQVCQN  121 (256)
Q Consensus       106 ~~~~~~~~~~~~~~~~  121 (256)
                      +.....+-+..++|..
T Consensus       258 d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  258 DAKTKMGETPLDVADE  273 (527)
T ss_pred             chhhhcCCCCccchhh
Confidence            9777777777666644

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=99.12  E-value=2.6e-10  Score=103.62  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=88.1

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccccccccccCCCChHHHHHHHHHHHHHHHHHHHH
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVR-------LYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLL  212 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll  212 (256)
                      | +.|+++.||++|+..+++.++++++++.......       .++....+..+-..  .......+.|+.+++.|+|++
T Consensus       236 g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~--~~~~~~~l~a~~vfl~~lrll  312 (425)
T PF08016_consen  236 G-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQ--WDQLYRYLLAFLVFLLWLRLL  312 (425)
T ss_pred             h-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence            5 7899999999999999998888888876544222       11111111111111  123456899999999999999


Q ss_pred             HhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy4451         213 FLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGKKL  255 (256)
Q Consensus       213 ~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~~~  255 (256)
                      ++++.|++++.+.-+++++.+|+..|+++++++++||+....+
T Consensus       313 ~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l  355 (425)
T PF08016_consen  313 KLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYL  355 (425)
T ss_pred             hheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987543

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG0507|consensus

Probab=99.11  E-value=9.5e-11  Score=108.32  Aligned_cols=102  Identities=27%  Similarity=0.308  Sum_probs=74.1

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCC-CCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCC--------------
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPS-IKV----RDGALH-AIQCDEINILKLILDWQKCHKPE--------------   64 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~-~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~--------------   64 (256)
                      |-+|.+|||+|+-+|+.|++|.++.+.. .++    |++||| |+++||.+++.+|+++|++...+              
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF  158 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh
Confidence            4667778888888888888887776621 121    777887 88888888888888777653211              


Q ss_pred             ------------------ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          65 ------------------SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        65 ------------------~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                                        ....|  ...++..+.+|+|+|+++|+.++++.|++.|.+++.-
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVG--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCC--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence                              01111  3355667899999999999999999999999999943

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.11  E-value=2.9e-10  Score=92.72  Aligned_cols=89  Identities=29%  Similarity=0.385  Sum_probs=80.8

Q ss_pred             cccCCCCChHHHHHHHhCC-----HHHHHHHhcCCCC--CC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc
Q psy4451           2 FYLLFQGVSALQTAIIKND-----VMMVKYLLSLPSI--KV-------RDGALH-AIQCDEINILKLILDWQKCHKPESE   66 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~-----~~~v~~Ll~~~~~--~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~   66 (256)
                      ...|.+|.||||.|+.+++     .++++.|++. ++  +.       |+||+| |+..|+.++++.|++.         
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~---------  169 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA---------  169 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc---------
Confidence            4678999999999999999     9999999999 55  22       889999 9999999999999999         


Q ss_pred             ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy4451          67 FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG  102 (256)
Q Consensus        67 ~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~g  102 (256)
                        +.+.+..+..|.||++.|+..++.++++.+++.+
T Consensus       170 --~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         170 --GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             --CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence              6666677889999999999999999999999987

>KOG4214|consensus

Probab=99.09  E-value=1.3e-10  Score=80.99  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      +.|++|||+|+..|+.+++++|+.. |+++      |-|||. |+..||.++|++|+++|+           +-..+.++
T Consensus        32 ~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GA-----------drt~~~Pd   99 (117)
T KOG4214|consen   32 YGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGA-----------DRTIHAPD   99 (117)
T ss_pred             hCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCc-----------ccceeCCC
Confidence            4689999999999999999999998 6765      679997 999999999999999954           44455566


Q ss_pred             CCcHHH
Q psy4451          79 CITPLM   84 (256)
Q Consensus        79 g~TpL~   84 (256)
                      |.+.+-
T Consensus       100 G~~~~e  105 (117)
T KOG4214|consen  100 GTALIE  105 (117)
T ss_pred             chhHHh
Confidence            755543

>KOG1710|consensus

Probab=99.08  E-value=3.5e-10  Score=94.13  Aligned_cols=87  Identities=26%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      ++|+|..|.|+|..|+.+|+.++|++||+. |+|+       +.|||+ |+..|+.++.++|++.           |+..
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda-----------Ga~~  105 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA-----------GARM  105 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHcCCchHHHHHHhc-----------cCcc
Confidence            368999999999999999999999999999 7877       569999 9999999999999998           6666


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLL   99 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll   99 (256)
                      ...|.-|.|+-.+||.-|+-++|...-
T Consensus       106 ~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  106 YLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccccchhhhHHHHHHHhcchHHHHHHh
Confidence            677788999999999999999887653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.08  E-value=2.7e-10  Score=80.52  Aligned_cols=53  Identities=30%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCC
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCH   61 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~   61 (256)
                      |+||||+|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++|++.
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            78999999999999999999998 6665      789999 99999999999999995543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.98  E-value=6.6e-10  Score=71.74  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHH
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLA   86 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lA   86 (256)
                      |.|||| |+..|+.+++++|+++           +.+.+.++..|.||+|+|
T Consensus        16 G~T~LH~A~~~g~~~~v~~Ll~~-----------g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   16 GNTPLHWAARYGHSEVVRLLLQN-----------GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             S--HHHHHHHHT-HHHHHHHHHC-----------T--TT---TTS--HHHH-
T ss_pred             CCcHHHHHHHcCcHHHHHHHHHC-----------cCCCCCCcCCCCCHHHhC
Confidence            667777 7777777777777766           777778888888888876

>KOG0195|consensus

Probab=98.97  E-value=9.2e-10  Score=91.81  Aligned_cols=94  Identities=19%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ++.++....||||+|+.+||.++|+.|++. .+|+      |+|||| ||--|+.++.+-|++.           |+..+
T Consensus        60 vn~tnmgddtplhlaaahghrdivqkll~~-kadvnavnehgntplhyacfwgydqiaedli~~-----------ga~v~  127 (448)
T KOG0195|consen   60 VNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-----------GAAVN  127 (448)
T ss_pred             cccccCCCCcchhhhhhcccHHHHHHHHHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhc-----------cceee
Confidence            356777788999999999999999999998 4544      899999 9999999999999998           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      ..+++|.||+..|-.--...+.+.--+.|.+.+
T Consensus       128 icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  128 ICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             ecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            899999999998744333334444446787776

>KOG0502|consensus

Probab=98.97  E-value=2e-09  Score=86.59  Aligned_cols=100  Identities=18%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      ++-.+.+|+.+++...|.+.+..+.++ .++.    |-|||. |+.+|+.++|++|++.|++..           ...+.
T Consensus       125 vs~~p~s~~slsVhql~L~~~~~~~~n-~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-----------~lgk~  192 (296)
T KOG0502|consen  125 VSLMPWSPLSLSVHQLHLDVVDLLVNN-KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-----------ALGKY  192 (296)
T ss_pred             cccccCChhhHHHHHHHHHHHHHHhhc-cccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-----------hhhhh
Confidence            455678899999999988888777766 3332    889998 999999999999999955543           33444


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQC  115 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~  115 (256)
                      ..|+|++|+..|..+|+++|++++.|++.-+-.+-++
T Consensus       193 resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTp  229 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTP  229 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCce
Confidence            5799999999999999999999999999655444443

>KOG1710|consensus

Probab=98.92  E-value=2.9e-09  Score=88.72  Aligned_cols=100  Identities=27%  Similarity=0.252  Sum_probs=83.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCC-C---CCC-chhHH-HHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCc
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLP-S---IKV-RDGAL-HAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCIT   81 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~-~---~~~-g~t~L-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~T   81 (256)
                      -++||..++.+|+.+....||+.. .   .|+ |.++| ||+.+|+.+++++|+++|+|++.          .++..+-|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~----------~qhg~~YT   81 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND----------KQHGTLYT   81 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc----------cccccccc
Confidence            467999999999999999999751 1   233 88998 69999999999999999665443          34456789


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |||.||-.|+.++.++|++.|+.....+..+.+..+
T Consensus        82 pLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   82 PLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             HHHHHHHcCCchHHHHHHhccCccccccchhhhHHH
Confidence            999999999999999999999999988877776543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.89  E-value=1.6e-09  Score=69.96  Aligned_cols=48  Identities=25%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          70 HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        70 ~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+.+.+|..|.||||+||..|+.|++++|++.|++++.++..+.++.+
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~   54 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLH   54 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHH
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHH
Confidence            678899999999999999999999999999999999999888877765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=4.5e-09  Score=58.66  Aligned_cols=29  Identities=48%  Similarity=0.599  Sum_probs=27.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      +|+||||+||..|+.|++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47999999999999999999999999986

>KOG0515|consensus

Probab=98.81  E-value=6.1e-09  Score=93.06  Aligned_cols=85  Identities=20%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      -|.+|-||||.|+..||.++|++|++. |+++      |+|||| |+.+++..+++.|+++|+.+..          ...
T Consensus       579 pNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA----------sTl  647 (752)
T KOG0515|consen  579 PNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA----------STL  647 (752)
T ss_pred             CCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe----------eec
Confidence            467899999999999999999999999 7766      999999 9999999999999999654321          223


Q ss_pred             CCCCcHHHHHH--HcCcHHHHHHHH
Q psy4451          77 PKCITPLMLAA--QLGRLEIVALLL   99 (256)
Q Consensus        77 ~~g~TpL~lAa--~~g~~eiv~~Ll   99 (256)
                      .++.||....-  +.|..++.++|-
T Consensus       648 SDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  648 SDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             ccccchhhhcchhhhhHHHHHHHHH
Confidence            45566655432  356777888885

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.75  E-value=1.6e-08  Score=57.74  Aligned_cols=32  Identities=44%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      +|.||||+|+++|+.+++++|+++|++++.+.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47999999999999999999999999998764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3599|consensus

Probab=98.73  E-value=5.6e-08  Score=93.42  Aligned_cols=112  Identities=14%  Similarity=0.264  Sum_probs=88.4

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-H-----H-H-hhcccccccccccCCCChHHHHHHHHHHHHHHHHHHH
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAY-V-----S-V-RLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNL  211 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~-~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rl  211 (256)
                      +...|+++.|||+|+..+.+.++.+++.+... .     . . ..++.++.+.+.-..  ....+..+.|+.+++.|+|+
T Consensus       491 ~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~--~~~~~~~l~a~lvfl~tiK~  568 (798)
T KOG3599|consen  491 RLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQ--WNIAARNLLAFLVFLTTIKL  568 (798)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999888888776543 1     1 1 122222333322222  22346799999999999999


Q ss_pred             HHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4451         212 LFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGK  253 (256)
Q Consensus       212 l~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~  253 (256)
                      .+++++|++++-+.-+|.+..+||+-|.++++|+++||+...
T Consensus       569 ~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~  610 (798)
T KOG3599|consen  569 WKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLG  610 (798)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.70  E-value=3.7e-08  Score=94.20  Aligned_cols=55  Identities=18%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDW   57 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~   57 (256)
                      ...|++|+||||+|+.+|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++
T Consensus       109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        109 NCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            46789999999999999999999999999 6665      789999 9999999999999998

>KOG0818|consensus

Probab=98.69  E-value=7.1e-08  Score=85.73  Aligned_cols=87  Identities=23%  Similarity=0.244  Sum_probs=76.8

Q ss_pred             ccCCCCCh------HHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcccc
Q psy4451           3 YLLFQGVS------ALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFK   68 (256)
Q Consensus         3 ~~d~~G~t------aLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~   68 (256)
                      |.|.+|.+      -||-.++.|+.|..-.||.. |+++       |+|||| |+..|+..-+++|+-+           
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY-----------  189 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY-----------  189 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhc-----------
Confidence            67788766      48999999999998888888 6665       899999 9999999999999988           


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy4451          69 GHCNSNDFPKCITPLMLAAQLGRLEIVALLLER  101 (256)
Q Consensus        69 ~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~  101 (256)
                      |++.++.|..|+||+.+|-+.||-++.+-|++.
T Consensus       190 GAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  190 GADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            788889999999999999999999888777653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.6e-08  Score=55.56  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=24.5

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV   35 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~   35 (256)
                      +|+||||+||++|+.|++++|+++ |+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCC
Confidence            589999999999999999999998 6765

>KOG0783|consensus

Probab=98.52  E-value=4.4e-08  Score=91.82  Aligned_cols=75  Identities=27%  Similarity=0.301  Sum_probs=65.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|..|+|+||+|+..|..++++.||++ |+++       |.|||| |+..|+.+++-+|+.+           |....
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-----------g~SL~  113 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-----------GRSLR  113 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhc-----------CCceE
Confidence            45799999999999999999999999999 8876       899999 9999999999999999           55555


Q ss_pred             CCCCCCCcHHHHHHH
Q psy4451          74 NDFPKCITPLMLAAQ   88 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~   88 (256)
                      .+|++|..||..-++
T Consensus       114 i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EecccCCCHHHHHhh
Confidence            677778888776554

>KOG4369|consensus

Probab=98.48  E-value=9.8e-08  Score=91.97  Aligned_cols=101  Identities=24%  Similarity=0.231  Sum_probs=53.2

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC------------
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPE------------   64 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~------------   64 (256)
                      |+.|-+||.+|+-.||..+|+.|+.+ .+++       ++|+|. ||..|..++|++||.+|++....            
T Consensus       787 dkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~  865 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR  865 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc
Confidence            45555555555555555555555554 2222       566665 77777777777777665432100            


Q ss_pred             ----------ccccCCCCCCC--CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          65 ----------SEFKGHCNSND--FPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        65 ----------~~~~~~~~~~~--~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                                ..-.|.++|.+  .+.|..||++|+..|+.+.++.|++.|.||+
T Consensus       866 Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  866 SGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDIN  919 (2131)
T ss_pred             CcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhc
Confidence                      00023333322  2345556666666666666666666555555

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=3e-07  Score=52.42  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=22.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV   35 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~   35 (256)
                      +|+||||+|+..|+.+++++|+++ |+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCC
Confidence            578888888888888888888887 6654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.33  E-value=7.7e-07  Score=71.43  Aligned_cols=90  Identities=19%  Similarity=0.335  Sum_probs=74.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy4451         142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDL  221 (256)
Q Consensus       142 ~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~~  221 (256)
                      ++|++++||++|++....+......+....                   +..   +.+.++.-++-++|++++++..+.+
T Consensus        26 ~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------------~~~---~~~~~~~~~l~~~R~l~~~~~~~~~   83 (200)
T PF00520_consen   26 RRYFRSWWNWFDFISVIPSIVSVILRSYGS-------------------ASA---QSLLRIFRLLRLLRLLRLLRRFRSL   83 (200)
T ss_dssp             GCCCCSHHHHHHHHHHHHHCCHHCCHCSS---------------------HH---CHCHHHHHHHHHHHHHHHHHTTTSH
T ss_pred             HHHhcChhhccccccccccccccccccccc-------------------ccc---cceEEEEEeeccccccccccccccc
Confidence            789999999999988777766654441100                   000   2467888889999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4451         222 GPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGK  253 (256)
Q Consensus       222 Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~  253 (256)
                      |+++.++.++.+++.+++.++.+++..|+++.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~  115 (200)
T PF00520_consen   84 RRLLRALIRSFPDLFKFILLLFIVLLFFACIG  115 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchh
Confidence            99999999999999999999999999999864

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG4369|consensus

Probab=98.32  E-value=3.1e-07  Score=88.64  Aligned_cols=118  Identities=18%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc-----------
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES-----------   65 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~-----------   65 (256)
                      .|+.+.|+|-+||..|..++|++||.. |++.      ..|||. |...|..++++.|+.+|++++...           
T Consensus       820 sdrtkdt~lSlacsggr~~vvelLl~~-gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLml  898 (2131)
T KOG4369|consen  820 SDRTKDTMLSLACSGGRTRVVELLLNA-GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLML  898 (2131)
T ss_pred             cccccCceEEEecCCCcchHHHHHHHh-hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhh
Confidence            588999999999999999999999998 6654      458996 999999999999999998765321           


Q ss_pred             -------------cccCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccccc
Q psy4451          66 -------------EFKGHCNSNDF-PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNT  122 (256)
Q Consensus        66 -------------~~~~~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~~~  122 (256)
                                   ...|.++|+.- .+.+|+|-+|+..|+.|.+.+||.+.+++..++.-+.+.+--|...
T Consensus       899 atmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  899 ATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             hhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcC
Confidence                         12466666554 4678999999999999999999999999998888777765435443

>KOG0506|consensus

Probab=98.27  E-value=9.7e-07  Score=78.33  Aligned_cols=87  Identities=21%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      .++..++.+|+.+|++..++.+.-. |.|.      ..|.|| |+..|+.+++++|++.          .+.+.+.+|.-
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~----------~kv~~~~kDRw  572 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA----------CKVDPDPKDRW  572 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHH----------HcCCCChhhcc
Confidence            3456789999999999998866544 4444      569999 9999999999999987          46778889999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCC
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGH  103 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga  103 (256)
                      |+|||.-|.+.+|.+++++|-+.--
T Consensus       573 ~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  573 GRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CCCcchHhHhcCcHHHHHHHHHHhc
Confidence            9999999999999999999987543

>KOG0705|consensus

Probab=98.24  E-value=3.1e-06  Score=76.80  Aligned_cols=84  Identities=24%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             HHHHHHHhCCHHHHHHHhcCCCCCC----------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLPSIKV----------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~~~~~----------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      -|.-|+...++..+-+||.++ ...          |.|+|| |++.|++.+.++|+-+           |.+.-+.|..|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg-~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-----------g~dv~~rda~g  694 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHG-SREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-----------GVDVMARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-CchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-----------CccceecccCC
Confidence            577788888999999999983 221          679999 9999999999999999           77777889999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          80 ITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      +|+|.+|-+.|..|++++|+++|..-+
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            999999999999999999999987543

>KOG0782|consensus

Probab=98.23  E-value=2.6e-06  Score=77.14  Aligned_cols=84  Identities=26%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCC-------CchhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIK-------VRDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~-------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      +.+..|.||+|+..|+-|+|+++|+++..+       .|+|.|| |++.++..+.++|++.           |+..-..|
T Consensus       896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda-----------gasl~ktd  964 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA-----------GASLRKTD  964 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc-----------chhheecc
Confidence            344566677777777777777777762111       1667777 7777777777777766           44444556


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHH
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLL   99 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll   99 (256)
                      .+|.||-.-|-+.|+.|...+|-
T Consensus       965 ~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  965 SKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             cCCCChHHHHHhcCCchHHHHHh
Confidence            66677777766677777666664

>KOG0522|consensus

Probab=98.02  E-value=1.2e-05  Score=72.54  Aligned_cols=79  Identities=22%  Similarity=0.242  Sum_probs=60.4

Q ss_pred             HHHHHHHhCCHHHHHHHhcCC---CC---CC-chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcH
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLP---SI---KV-RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITP   82 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~---~~---~~-g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~Tp   82 (256)
                      |+|.++-..+.+-.+..+...   .+   |+ |+|||| |+..|+.+.++.|+.+           +++...+|+.|++|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-----------~Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-----------GADVSIKNNEGWSP   91 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-----------CCCccccccccccH
Confidence            488888888776555544331   12   22 789998 9999999999999988           77777888999999


Q ss_pred             HHHHHHcCcHHHHHHHHH
Q psy4451          83 LMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        83 L~lAa~~g~~eiv~~Ll~  100 (256)
                      ||.|+..|+.+++..++.
T Consensus        92 L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999887766553

>KOG0506|consensus

Probab=97.87  E-value=5.5e-06  Score=73.65  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=51.0

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDW   57 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~   57 (256)
                      |-+.|++.+|+||.|+..|+.+++|+|++..++++      |+|||. |-..+|.+++++|-+.
T Consensus       532 ~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  532 LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence            45789999999999999999999999999755554      889998 9999999999999765

>KOG0511|consensus

Probab=97.85  E-value=4.3e-05  Score=66.43  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=57.9

Q ss_pred             HH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          40 LH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        40 L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      +. |++.|..+.|+.|++.           |.+.|+.|.-+..||.+|+-.||.+++++|+++||--+...-.+-.|.
T Consensus        40 lceacR~GD~d~v~~LVet-----------gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVET-----------GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHhhcccHHHHHHHHHh-----------CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            55 9999999999999998           888999999999999999999999999999999997765554444453

>KOG0522|consensus

Probab=97.82  E-value=3.1e-05  Score=69.85  Aligned_cols=53  Identities=25%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDW   57 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~   57 (256)
                      .|..|+||||+|+..||.+.++.|+.. ++++      |+++|| |++.|+.+++..++.+
T Consensus        51 ~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   51 RDPPGRTPLHLAVRLGHVEAARILLSA-GADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccCCCCccHHHHHHhcCHHHHHHHHhc-CCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            578899999999999999999999998 5654      899999 9999999988888776

>KOG0705|consensus

Probab=97.78  E-value=5.6e-05  Score=68.88  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=51.9

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKC   60 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~   60 (256)
                      |.|.+|+||||+||+.|++.+.++|+=+ |+|+      |.|+|. |=+.|..+++..|+++|..
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            6788999999999999999999999988 7776      889997 9999999999999999764

>KOG0783|consensus

Probab=97.71  E-value=2.2e-05  Score=74.25  Aligned_cols=71  Identities=23%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF-PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC  113 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~  113 (256)
                      |.++|| |+..|..++++.|++|           |.+.+.+| +.|.||||-|...|+.|++-+||++|++....+..+.
T Consensus        52 GR~alH~~~S~~k~~~l~wLlqh-----------Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   52 GRTALHIAVSENKNSFLRWLLQH-----------GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             ccceeeeeeccchhHHHHHHHhc-----------CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence            899999 9999999999999999           66666555 5799999999999999999999999999998877777


Q ss_pred             cccc
Q psy4451         114 QCVQ  117 (256)
Q Consensus       114 ~~~~  117 (256)
                      ++.+
T Consensus       121 splq  124 (1267)
T KOG0783|consen  121 SPLQ  124 (1267)
T ss_pred             CHHH
Confidence            6654

>KOG0782|consensus

Probab=97.70  E-value=6.3e-05  Score=68.47  Aligned_cols=72  Identities=21%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             hhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcc
Q psy4451          37 DGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQC  115 (256)
Q Consensus        37 ~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~  115 (256)
                      .++|| |+..|+-++|+++++||+.         ...+..++.|.|.||.||..++-.+.++|++.|++..+.+.-+-++
T Consensus       900 ~sllh~a~~tg~~eivkyildh~p~---------elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  900 CSLLHYAAKTGNGEIVKYILDHGPS---------ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP  970 (1004)
T ss_pred             hhHHHHHHhcCChHHHHHHHhcCCH---------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence            47788 9999999999999999652         2245667889999999999999999999999999988777666665


Q ss_pred             cc
Q psy4451         116 VQ  117 (256)
Q Consensus       116 ~~  117 (256)
                      .+
T Consensus       971 ~e  972 (1004)
T KOG0782|consen  971 QE  972 (1004)
T ss_pred             HH
Confidence            54

>KOG0818|consensus

Probab=97.63  E-value=0.00013  Score=65.41  Aligned_cols=67  Identities=21%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             HH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          40 LH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF-PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        40 L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      || .++.|+.++.-.|+..|+           +.|-.+ ++|.||||.||+.|+.--+++|+-.|||+..++..+.++.+
T Consensus       137 LhasvRt~nlet~LRll~lGA-----------~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~  205 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGA-----------QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVD  205 (669)
T ss_pred             HHHHhhcccHHHHHHHHHccc-----------ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHH
Confidence            78 889999999999999854           444333 47899999999999999999999999999999999888876

>KOG2384|consensus

Probab=97.62  E-value=0.00013  Score=57.84  Aligned_cols=59  Identities=19%  Similarity=0.094  Sum_probs=50.2

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCc
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQK   59 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~   59 (256)
                      |+..|..|.|||+.|+..|+.+.+++|++++.+.+      +.+.+. |-..|+.++++.|-+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            56789999999999999999999999999943555      445665 889999999999988733

>KOG0521|consensus

Probab=97.52  E-value=9.3e-05  Score=71.57  Aligned_cols=82  Identities=29%  Similarity=0.272  Sum_probs=71.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      .|.|+||.|+..+..-++++|+++ |+++      |++|+| +...|+...+..++++           |++.+..+++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-----------~a~~~a~~~~~  722 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKR-----------GADPNAFDPDG  722 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccc-----------cccccccCccC
Confidence            579999999999999999999999 6655      889998 9999999999999998           77788889999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHH
Q psy4451          80 ITPLMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~  100 (256)
                      .+|+..|....+.+++-++.-
T Consensus       723 ~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             cchhhHHhhhccccHHHHHhh
Confidence            999999977777777766643

>smart00248 ANK ankyrin repeats

Probab=97.21  E-value=0.00072  Score=35.50  Aligned_cols=29  Identities=52%  Similarity=0.691  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      .|.||+|.|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36899999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520|consensus

Probab=97.20  E-value=0.00025  Score=68.88  Aligned_cols=91  Identities=20%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHHHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      ...|++-+|+++..+....++.+++-.+...      |..-+|=|..++.+..-++...          .|...+.+|..
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~----------~~~ai~i~D~~  640 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISA----------DGVAIDIRDRN  640 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEee----------cccccccccCC
Confidence            3457778888888888877777777311100      2233332333333333333221          24555556666


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCI  105 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i  105 (256)
                      |+||||+|+.+|+..++..|.+.|++.
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHHHhcccc
Confidence            666666666666666666666555543

>KOG0521|consensus

Probab=97.08  E-value=0.00048  Score=66.75  Aligned_cols=71  Identities=25%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                      |.+++| |+..|..-++++|+++           |++.|..+..|.||+|.+...|+......|+++|++.+.....+..
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~-----------ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~  724 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQN-----------GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKL  724 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhc-----------CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcc
Confidence            678999 9999999999999999           7788899999999999999999999999999999998866555444


Q ss_pred             ccc
Q psy4451         115 CVQ  117 (256)
Q Consensus       115 ~~~  117 (256)
                      ..+
T Consensus       725 ~l~  727 (785)
T KOG0521|consen  725 PLD  727 (785)
T ss_pred             hhh
Confidence            443

>smart00248 ANK ankyrin repeats

Probab=96.90  E-value=0.0016  Score=34.07  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIK   34 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~   34 (256)
                      +|.||+|.|+..++.++++.|+++ +.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            478889999999999999988887 443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0511|consensus

Probab=96.88  E-value=0.0024  Score=55.81  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=46.3

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCC
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHK   62 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~   62 (256)
                      .--|..||+.|+.|.|++|++. |+++      ..+||. |+-.||.++|++|+++|+-..
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            3468999999999999999998 7766      568998 999999999999999988543

>KOG0520|consensus

Probab=96.83  E-value=0.00082  Score=65.38  Aligned_cols=92  Identities=17%  Similarity=0.067  Sum_probs=71.9

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCC--CCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPS--IKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~--~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|++|...+|+ |..++.+.+-++..-.+  ++.    |+|||| |+..|+..++..|.+.|++...     -.+.+..+
T Consensus       604 ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~-----~tdps~~~  677 (975)
T KOG0520|consen  604 LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA-----VTDPSPET  677 (975)
T ss_pred             hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccccc-----ccCCCCCC
Confidence            47788889999 66667777766665423  332    999999 9999999999999988776542     34457778


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHC
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLER  101 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~  101 (256)
                      +.|.|+..+|...|+.++..+|-+.
T Consensus       678 p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  678 PGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCchhhhhhcccccchHHHHhhh
Confidence            8999999999999999988777644

>KOG2384|consensus

Probab=96.68  E-value=0.0068  Score=48.29  Aligned_cols=64  Identities=17%  Similarity=0.040  Sum_probs=55.2

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      |+|++. |+..|+-+.+.+|+++|          .+.....+..|++++.+|-+.|..+.++.|.+...+...|.
T Consensus        12 gWTalmcaa~eg~~eavsyllgrg----------~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen   12 GWTALMCAAMEGSNEAVSYLLGRG----------VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             cchHHHHHhhhcchhHHHHHhccC----------cccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            899998 99999999999999993          15667888999999999999999999999998866555443

>KOG3609|consensus

Probab=95.45  E-value=0.031  Score=53.71  Aligned_cols=55  Identities=25%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCC---------------CchhHHH-HHHcCCHHHHHHHHhCCcCCCC
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIK---------------VRDGALH-AIQCDEINILKLILDWQKCHKP   63 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~---------------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~   63 (256)
                      ..||.+|+..|..++|+.++++.+..               ++-||+. ||..+|.|++++|+.+|+++..
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            57999999999999999999983211               1569998 9999999999999999987654

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.01  E-value=0.12  Score=42.58  Aligned_cols=88  Identities=18%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCCch--------hHH---HHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC---
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKVRD--------GAL---HAIQCDEINILKLILDWQKCHKPESEFKGHCNSN---   74 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~g~--------t~L---~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~---   74 (256)
                      .+|+-+|..++..+++-+|+++-....++        .-+   ......+..+++..+++|          -.+.|.   
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~G----------lv~vN~~F~  249 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRG----------LVDVNKKFQ  249 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhcc----------ccccchhhh
Confidence            46788888888888988888762211111        001   122233456666666663          233343   


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      +-+.|.|-|.-|.+.++.||+..|+++||-..
T Consensus       250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  250 KVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             ccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence            34579999999999999999999999999543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=93.83  E-value=0.097  Score=47.61  Aligned_cols=39  Identities=28%  Similarity=0.182  Sum_probs=22.0

Q ss_pred             hHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHH
Q psy4451          38 GALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAA   87 (256)
Q Consensus        38 t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa   87 (256)
                      |+|| |+..|..++|..+|+.           |++...+|..|.||-.+++
T Consensus       432 T~LH~aa~qg~~k~v~~~Lee-----------g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEE-----------GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHh-----------cCCchhcccCCCCcccccc
Confidence            5555 5555555555555555           4445555555555555554

>KOG2505|consensus

Probab=93.55  E-value=0.15  Score=46.38  Aligned_cols=65  Identities=14%  Similarity=-0.044  Sum_probs=48.1

Q ss_pred             HHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          48 INILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        48 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..++.|.+++.+.+-...     ....+.-..||||.|+..|..+++.++|+.|+|....+..+.++.+
T Consensus       404 p~~ie~lken~lsgnf~~~-----pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~  468 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT-----PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYS  468 (591)
T ss_pred             hhHHHHHHhcCCccccccc-----ccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccc
Confidence            5677777777554321111     0122233579999999999999999999999999998888888887

>KOG2301|consensus

Probab=91.77  E-value=0.5  Score=49.59  Aligned_cols=92  Identities=11%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSY  219 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~  219 (256)
                      ++..||++.||.+|++...+.++..++......                    ...+...+-+...+--.|++++++.++
T Consensus      1212 ~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~--------------------~~~~~~~~~~~rl~rV~R~l~Li~~~~ 1271 (1592)
T KOG2301|consen 1212 RFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK--------------------YESSPTLLRFLRLFRVGRFLRLIPQAK 1271 (1592)
T ss_pred             hhhHhccccchheEeeeeeHhHHHHHHHHHHHh--------------------hccchhhHHHHHHHHHHHHHHhccccc
Confidence            788999999999999988888888776643321                    001124566677777788888899888


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         220 DLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       220 ~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      .+-.+.-++-..+.-+.....+.+++++-||+
T Consensus      1272 ~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi 1303 (1592)
T KOG2301|consen 1272 TIRTLLLTLMMSLPALFFIILLLFLLFFIYAI 1303 (1592)
T ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            88887777766666666666666666666665

>KOG2302|consensus

Probab=90.32  E-value=1.1  Score=44.64  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=25.0

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFW  167 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~  167 (256)
                      |.++||+|.||.+|+.+.++.+..+.+-
T Consensus      1496 G~rrFfkdrwnqldlaivlls~mgitle 1523 (1956)
T KOG2302|consen 1496 GERRFFKDRWNQLDLAIVLLSVMGITLE 1523 (1956)
T ss_pred             hHHHHHhhhhhhhhHHHHHHHHhcccHh
Confidence            9999999999999999888888777655

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.95  E-value=0.85  Score=30.84  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=39.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCCchhHHH-HHHcCCHHHHHHHHhC
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKVRDGALH-AIQCDEINILKLILDW   57 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~g~t~L~-A~~~g~~~~v~~Ll~~   57 (256)
                      +.-+..|+..|+.|+++.+++. + .+.+..+. |+..-+-++++.|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~-~-~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKK-N-KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH-h-ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568999999999999999976 3 33355566 9999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG2302|consensus

Probab=86.74  E-value=6.6  Score=39.39  Aligned_cols=28  Identities=14%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFW  167 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~  167 (256)
                      |-..|+++.||.+|.+.....++-+.+.
T Consensus      1185 ge~aYl~ssWN~LDgflv~vsviDilvs 1212 (1956)
T KOG2302|consen 1185 GEQAYLRSSWNVLDGFLVAVSVIDILVS 1212 (1956)
T ss_pred             chHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            7789999999999988777766666544

>KOG2301|consensus

Probab=86.45  E-value=5.5  Score=42.21  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSY  219 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~  219 (256)
                      |...|+++.||++|++.+.-.+++++.....                          ....-..-++=-+|-++-+...+
T Consensus       897 Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~~--------------------------~~~ik~lr~lRaLRPLR~i~r~~  950 (1592)
T KOG2301|consen  897 GFFFYFRNAWNWLDFVVVIVSLISLIASLKI--------------------------LSLIKSLRILRALRPLRALSRFP  950 (1592)
T ss_pred             HHHHHHhhHHhhhhHHHhhhHHHHHHHhhhh--------------------------hhHHHHHHHHHHHHHHHHHHHcc
Confidence            8888999999999998777777776554220                          01222233344556666666666


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         220 DLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       220 ~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      .+.-.+-.+-.-+..|+=-+++.+++.+-||+
T Consensus       951 ~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai  982 (1592)
T KOG2301|consen  951 GMRVVVLALFGGLPEIFNVLLVCLIFWFIFAI  982 (1592)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777767677777777777777777765

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.22  E-value=2.2  Score=35.26  Aligned_cols=40  Identities=15%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CHHHHHHHhcCCCCCC---------chhHHH-HHHcCCHHHHHHHHhCCc
Q psy4451          20 DVMMVKYLLSLPSIKV---------RDGALH-AIQCDEINILKLILDWQK   59 (256)
Q Consensus        20 ~~~~v~~Ll~~~~~~~---------g~t~L~-A~~~g~~~~v~~Ll~~~~   59 (256)
                      +..+.++.++++-+++         |+|.|. |...++.+++..|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            5566777777632333         899998 999999999999999976

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3733|consensus

Probab=82.70  E-value=2.8  Score=37.79  Aligned_cols=54  Identities=11%  Similarity=0.271  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         198 SLFAVATVMSFCNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       198 ~~~a~~~~~~~~rll~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      +++..+.++.|...++|+..++..-.++.++++.+-.++||...=++++++|..
T Consensus       377 I~LGtstLLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~F  430 (566)
T KOG3733|consen  377 ILLGTSTLLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCF  430 (566)
T ss_pred             HHhCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            688999999999999999999999999999999999999999999999999975

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.48  E-value=3.4  Score=27.87  Aligned_cols=47  Identities=26%  Similarity=0.219  Sum_probs=37.1

Q ss_pred             hhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy4451          37 DGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER  101 (256)
Q Consensus        37 ~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~  101 (256)
                      +.-+. |+..|+.|+++..++.+.                  .....+..|....+.|++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~------------------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK------------------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc------------------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            33444 999999999999987621                  113468999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1545|consensus

Probab=80.71  E-value=15  Score=32.71  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=23.7

Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4451         140 RSKRFFSVRWNIYEVFKCSLFVLTFMFWVA  169 (256)
Q Consensus       140 ~~~~~~~~~wn~~d~~~~~l~~~~~~l~~~  169 (256)
                      ....++++.-|++|++.+.-|.+++..-++
T Consensus       279 sK~~Ff~nimNiIDiVaI~PyFitlgtela  308 (507)
T KOG1545|consen  279 SKATFFRNIMNIIDIVAIIPYFITLGTELA  308 (507)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            566788888999999998888888775543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
              + L  A+I N   + + LL     P ++   G   LH A +   +  + ++      
Sbjct: 44  LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---- 99

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                       + ++    T L LA+  G L IV LL+  G
Sbjct: 100 SCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSLG 140

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 22/107 (20%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS-------LPSIKVRDG----ALH-AIQCDEINILKLIL 55
           G + L  A  +  +  V  L            +K  +      LH A     + I++L++
Sbjct: 78  GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137

Query: 56  DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   +   +  CN        T L LA  L   ++V+LLL+ G
Sbjct: 138 S----LGADVNAQEPCNGR------TALHLAVDLQNPDLVSLLLKCG 174

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 18/103 (17%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
            G + L  A I   + +V+ L+SL   +  ++      ALH A+     +++ L+L    
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CG 174

Query: 60  CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  ++G+          +P  L        I   L +  
Sbjct: 175 ADVNRVTYQGY----------SPYQLTWGRPSTRIQQQLGQLT 207

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             + L  A       MVK LL     P++    G   LH A +   +  +  +L+     
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----- 134

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 K           F    TPL +AA+ G++ +  LLLER 
Sbjct: 135 ------KEASQACMTKKGF----TPLHVAAKYGKVRVAELLLERD 169

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 5e-08
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 25/106 (23%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
           QGV+ L  A  +    MV  LLS     ++  + G   LH   Q   + +  +++     
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---- 299

Query: 61  HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   G          +    TPL +A+  G +++V  LL+  
Sbjct: 300 -------HGVMVDATTRMGY----TPLHVASHYGNIKLVKFLLQHQ 334

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G++ L  A+  N++ +VK LL     P     +G   LH A + +++ + + +L     +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ----Y 234

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
              +  +   +        TPL LAAQ G  E+VALLL + 
Sbjct: 235 GGSANAE---SVQGV----TPLHLAAQEGHAEMVALLLSKQ 268

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G++ L     +  V +   L+          R G   LH A     I ++K +L      
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ----- 332

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                             +    +PL  AAQ G  +IV LLL+ G
Sbjct: 333 ------HQADVNAKTKLGY----SPLHQAAQQGHTDIVTLLLKNG 367

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A    ++ +VK+LL      + K + G   LH A Q    +I+ L+L     +
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK----N 366

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                      +       TPL +A +LG + +  +L    
Sbjct: 367 GASPNEVSSDGT-------TPLAIAKRLGYISVTDVLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 38/95 (40%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
           G++ L  A     + +VK LL         GA         N+                 
Sbjct: 14  GLTPLHVASFMGHLPIVKNLLQR-------GA-------SPNV----------------- 42

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               N        TPL +AA+ G  E+   LL+  
Sbjct: 43  ---SNVKVE----TPLHMAARAGHTEVAKYLLQNK 70

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCHK 62
             +   TA  K D   +  LL    +   D     AL           ++L+ +      
Sbjct: 44  YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE----AG 99

Query: 63  PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
            + + +   +       +T L +AA   R E+V  L+E G
Sbjct: 100 ADLDHR---DMRG---GLTALHMAAGYVRPEVVEALVELG 133

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           T L LA ++ +       ++ G
Sbjct: 145 TALELAREILKTTPKGNPMQFG 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS--------LPSIKVRDG--ALH-AIQCDEINILKLILD 56
           G +AL  A + +++     L+           + ++ +G  ALH A+    +N+++ +L 
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 57  WQKCH------KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                      +       +   N       PL  AA +G  EIV LL+E G
Sbjct: 97  ----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINI----LKLILD 56
            G   L  A       +V+ L+        +   G   LH  I             L+L 
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 57  WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               +      K      +     TP  LA   G + +   L+++ 
Sbjct: 180 ----YDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKR 220

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 22/117 (18%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDG--ALHA----------IQCDEIN 49
           G   L  A   N   +V YL      +         G   LHA                 
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 50  ILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP 106
           +  L+L       P++  +   N++      +PLM+AA+ G++ I   ++ R     
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGL----SPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 24/98 (24%)

Query: 6   FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
           ++G +AL  AI +     V+ L+         GA       +++         +      
Sbjct: 91  YRGQTALHIAIERRCKHYVELLVEK-------GA-------DVH--------AQARGRFF 128

Query: 66  EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
           + K       F +   PL LAA   +  IV  L E GH
Sbjct: 129 QPKDEGGYFYFGE--LPLSLAACTNQPHIVHYLTENGH 164

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 11  ALQTAIIKNDVM----MVKYLLSL-------PSIKVRDG--ALH-AIQCDEIN---ILKL 53
            L   + +        ++ +LL+           +   G   L  A+          + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 54  ILDWQKCHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +LD  +      EF         +    T L +A +      V LL+E+G
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQ-TALHIAIERRCKHYVELLVEKG 116

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCH 61
           +  +   TA  K D   +  LL    +   D     AL           ++L+ +     
Sbjct: 44  EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE----A 99

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             + + +   +       +T L +AA   R E+V  L+E G
Sbjct: 100 GADLDHR---DMRG---GLTALHMAAGYVRPEVVEALVELG 134

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
            G +AL           V+ L      +  RD      ALH A       +++ +++   
Sbjct: 76  NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE--- 132

Query: 60  CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               + E +   +        T L LA ++ +       ++ G
Sbjct: 133 -LGADIEVE---DERGL----TALELAREILKTTPKGNPMQFG 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)

Query: 6   FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
           ++G +AL  AI + ++ +V  L+        +GA       ++            +    
Sbjct: 99  YKGQTALHIAIERRNMTLVTLLVE-------NGA-------DVQ--------AAAN--GD 134

Query: 66  EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
            FK       F     PL LAA   +L IV  LL+   
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV------RDG--ALHA---IQCDEINILKLILD 56
           G   L  A   N + +VK+LL               G   LHA   +  + ++  K +  
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 57  WQKCHKPESEFKGHCNSNDFPKCI------TPLMLAAQLGRLEIVALLLERG 102
                          +     + I      TPL LAA  G++ ++A +L+R 
Sbjct: 208 MYNEIL---ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 21/102 (20%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
            +  +  A  K     V+ L+     P+I+ R G  ALH A +   ++  K +       
Sbjct: 20  NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----- 74

Query: 62  KPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G   +         P+ LA    + ++V  L+E  
Sbjct: 75  ------VGEVHSLWH---GQKPIHLAVMANKTDLVVALVEGA 107

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 22/106 (20%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPS--------IKVRDG--ALH-AIQCDEINILKLILD 56
             + L  A+   +   +  ++               + G   LH AI  +  ++    ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 57  WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  +   +   ++        PL L+ +   + +   LL++ 
Sbjct: 233 ----MGIDVNME---DNEHT----VPLYLSVRAAMVLLTKELLQKT 267

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 16/107 (14%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G S L  AI+ N   +    + +    +++  +    L+ +++   + + K +L      
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ----K 266

Query: 62  KPESEFKGHCNSN------DFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +     N      D    +  +  AA   + E++ LL E+ 
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 16/107 (14%)

Query: 8   GVSALQTAIIKNDVM--MVKYLLSL---PSIKVRDG--ALH-AIQCDEINILK-LILDWQ 58
           G +AL   +        M+K L+ L   P+ K +     L  A++      L  ++    
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 59  KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
                  ++    N        + L  A  +   ++    +E G  +
Sbjct: 198 SKSSLRLDYA---NKQGN----SHLHWAILINWEDVAMRFVEMGIDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 11/116 (9%), Positives = 30/116 (25%), Gaps = 32/116 (27%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLS------LPSIKVRDGA------------LH-AIQCDE 47
           +    L  ++    V++ K LL       + +    +G             +  A    +
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 48  INILKLILDWQKCHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +L+L+ +           K      +         +   +     +  + L   
Sbjct: 303 QEVLQLLQE-----------KLDEVVRSLNTGA-GGAVKRKKKAAPAVKRMKLAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 21/97 (21%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
           G +AL  A     V   KYL S+     +  G   +H A+  ++ +++  +++       
Sbjct: 53  GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVE------- 105

Query: 64  ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
                             P  L  +    E+  +   
Sbjct: 106 ------GAKERGQ----MPESLLNECDEREVNEIGSH 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 69  GHCNSNDFPKC---------ITPLMLAAQLGRLEIVALLLERG 102
           G  +  DFPK          +  + +AA+ G+ + V  L+E G
Sbjct: 1   GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG 43

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH--AIQCDEINILKLILDWQK 59
           +G S +  A       +V YL++      +  ++G   L   A +   ++  +L+L    
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT--- 164

Query: 60  CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                       + N      T L  A   G   +++LLLE G
Sbjct: 165 -FNVSVNLGDKYHKN------TALHWAVLAGNTTVISLLLEAG 200

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 18/102 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQKC 60
            V+ L  A I N + +VKY +S    +    G      LH A +   ++++  ++     
Sbjct: 42  NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK---- 97

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +  +       +        + + LAAQ G   IVA L+ +G
Sbjct: 98  YGADPSLI---DGEGC----SCIHLAAQFGHTSIVAYLIAKG 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 22/104 (21%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
               +  A         + L+          ++    LH A   + I+++K  +      
Sbjct: 9   STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----- 63

Query: 62  KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 KG        D     TPL  A + G L +V  L++ G
Sbjct: 64  ------KGAIVDQLGGDLNS--TPLHWATRQGHLSMVVQLMKYG 99

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 19/103 (18%)

Query: 8   GVSALQTAIIK-NDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
           G++ L  A  + + V   + LL+   S+ + D      ALH A+      ++ L+L+   
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE--- 198

Query: 60  CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 + +   N        + L LA Q   + ++  L E  
Sbjct: 199 -AGANVDAQ---NIKGE----SALDLAKQRKNVWMINHLQEAR 233

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A IK D+  V+YLL     P++K   G   LH A     + +++L+L     H
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ----H 65

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           K      G+ N        +PL  AA+ G ++IV LLL  G
Sbjct: 66  KALVNTTGYQN-------DSPLHDAAKNGHVDIVKLLLSYG 99

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 81  TPLMLAAQLGRLEIVALLLERGH 103
           T L +A+  G +  V  LL+ G 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGS 34

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
                  A+   D+  VK  ++     +  +  G   LH A  C ++ IL+ +L      
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----- 61

Query: 62  KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 KG   +         ITPL+ A   G +  V LLL +G
Sbjct: 62  ------KGADINAPDKH---HITPLLSAVYEGHVSCVKLLLSKG 96

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 24/107 (22%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS-----LPSIKVRDG----ALH-AIQCDEINILKLILDW 57
           G +A   A        ++ LL         ++ R+     ALH A+  +    ++L+L+ 
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE- 137

Query: 58  QKCHKPESEFKGHCNSN--DFPKCITPLMLAAQLGRLEIVALLLERG 102
                     +G  + +  D     +PL+ A +   L +V LLL+ G
Sbjct: 138 ----------RG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQKC 60
           G++AL  A+       V+ LL     I   D       L  A++ + +++++L+L     
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ---- 171

Query: 61  HKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   G + N+  +    + L  A+  G L +V  L+  G
Sbjct: 172 -------HGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSG 206

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G S L  A+  N + MV+ LL      + ++  G  ALH A     + +++ ++      
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR----S 205

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +S  K   N ++     TPLM+A     ++I+     R 
Sbjct: 206 GADSSLK---NCHND----TPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 34/95 (35%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
           G + L  A+++ ++  V  L++L       G        E++I                 
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQG---GR-------ELDI----------------- 41

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               N+       TPL LA       +V LL+  G
Sbjct: 42  ---YNNLRQ----TPLHLAVITTLPSVVRLLVTAG 69

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + +  A     V +VK LLS     +I+  +    LH A     ++I +++L      
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA----A 166

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           K +       N +      +PL +AA+  R + V L L R 
Sbjct: 167 KCDLHAV---NIHGD----SPLHIAARENRYDCVVLFLSRD 200

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             S L  A     V +   L+           D    L  A + + +  +K ++      
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK----A 66

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               + K   ++       T L LAA+ G  E+V  LL  G
Sbjct: 67  GALVDPK---DAEGS----TCLHLAAKKGHYEVVQYLLSNG 100

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
               L  A     V + + LL+           G   LH A + +  + + L L      
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS----R 199

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   K   N        TPL  A+   ++     + +  
Sbjct: 200 DSDVTLK---NKEGE----TPLQCASLNSQVWSALQMSKAL 233

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG-----ALH-AIQCDEINILKLILDWQK 59
            G + L  A+I  D  MV+ L      +   +       LH A++    ++L+L+L    
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AG 215

Query: 60  CHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  + G           TPL  A       +  LL   G
Sbjct: 216 ADPTARMYGGR----------TPLGSALLRPNPILARLLRAHG 248

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 17/108 (15%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
           G +AL  A           LL           D           + +     +D Q   +
Sbjct: 78  GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 63  PESEF----KG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
            E E             N +      TPL +A      E+V LL + G
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGH----TPLHVAVIHKDAEMVRLLRDAG 181

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 35/95 (36%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
           G +AL  A+I      + +LL             +   + +++                 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLG-----------FSAGHEYLDL----------------- 40

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               N        T L LAA LG    V  L   G
Sbjct: 41  ---QNDLGQ----TALHLAAILGEASTVEKLYAAG 68

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A+      +++ LL     P+ ++  G   L  A+      + +L+      H
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA----H 247

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                       +      +P   +      +      E  
Sbjct: 248 GAPEPED---GGDKL----SPCSSSGSDSDSDNRDEGDEYD 281

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             + L  A   N V +V+ LL        K + G   LH A       + +L+L      
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK----- 112

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G      +   F    TPL  AA   R+E+ +LLL  G
Sbjct: 113 ------HGACVNAMDLWQF----TPLHEAASKNRVEVCSLLLSHG 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 31/120 (25%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQ--KCHKPES 65
           G SA+  A        + Y             L A +  ++  +K  L  +     +P+S
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK------GHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 66  EF--------KGHCNSNDFPKC---------------ITPLMLAAQLGRLEIVALLLERG 102
                       H       +                +TPL +AA+    +++ +L + G
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 8   GVSALQTAIIK---NDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQ 58
             +AL  A+         + + LL      + K +D    LH A +    ++++++    
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-- 268

Query: 59  KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             H  +                T L  AA  G L+   LLL  G
Sbjct: 269 --HGAKMNALDSLGQ-------TALHRAALAGHLQTCRLLLSYG 303

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 25/98 (25%)

Query: 6   FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPES 65
           +QG SAL  AI K  +  VK L+         GA       ++++ +    + + H+   
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVEN-------GA-------DVHL-RACGRFFQKHQGTC 132

Query: 66  EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH 103
            + G            PL LAA   + ++V  LLE  H
Sbjct: 133 FYFGE----------LPLSLAACTKQWDVVTYLLENPH 160

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 14/116 (12%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPS------IKVRDG--ALHA---IQCDEINILKLILD 56
           G   L  A       +V YLL  P            G   LHA   I  +      L++ 
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 57  WQKCHKPESEFKGHCNSNDFPKC---ITPLMLAAQLGRLEIVALLLERGHCIPYPH 109
                             +       +TPL LAA+ G++EI   +L+R       H
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 19/110 (17%)

Query: 11  ALQTAIIKNDVMMVKYLLS---------LPSIKVRDG----ALH-AIQCDEIN---ILKL 53
            L + + +     +  LL            S           L  A+   +      +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 54  ILDW-QKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +L   +    P+      C    + +  + L +A +   L+ V LL+E G
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQCVKLLVENG 113

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 24/102 (23%)

Query: 11  ALQTAIIKNDVMMVKYLLS----LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
           ++     + ++  +K  L     L +     G   L  A    EI  ++ +L+       
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------- 57

Query: 64  ESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                G   H  + +     + L LA+  G  +IV LLLER 
Sbjct: 58  ----WGADPHILAKER---ESALSLASTGGYTDIVGLLLERD 92

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A    ++  V++LL     P I  ++   AL  A      +I+ L+L+     
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE----- 90

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +       + N      TPL+ A +   ++ V  LL RG
Sbjct: 91  ------RDVDINIYDWNGG----TPLLYAVRGNHVKCVEALLARG 125

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             SAL  A       +V  LL      +I   +G   L  A++ + +  ++ +L      
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA----- 123

Query: 62  KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +G      ++      TP+ LA  LG  ++  ++    
Sbjct: 124 ------RGADLTTEADS---GYTPMDLAVALGYRKVQQVIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
             +   A  G L+ +   L +G
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKG 25

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 16/101 (15%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             + L  A  + ++  ++  L      +   + G  AL+ A      +I++++       
Sbjct: 73  IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +    G           T L  AA  G  +IV LLL +G
Sbjct: 133 LNQQNKLGD----------TALHAAAWKGYADIVQLLLAKG 163

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 18/102 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
           G +AL  A       +V+ L + P+I++    + G  ALH A      +I++L+L     
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA---- 161

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               ++ +   N            +A       ++       
Sbjct: 162 KGARTDLR---NIEKK----LAFDMATNAACASLLKKKQGTD 196

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 15/102 (14%), Positives = 42/102 (41%), Gaps = 19/102 (18%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
           G +AL  A+   ++  VK  +          + G   + + A+  ++++I+   L     
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS---- 150

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  +   ++ D    ++ + +  + G ++++ LLL+  
Sbjct: 151 -------EI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
               L  A    D  +VK LL      S     G  AL+ A+    +  +KL +      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK----K 117

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                F G        K  T    A  L  + IV+  L   
Sbjct: 118 NWRLMFYG----KTGWK--TSFYHAVMLNDVSIVSYFLSEI 152

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 18/93 (19%)

Query: 15  AIIKNDVMMVKYLLSLPSIKVRDG----ALH-AIQCDEINILKLILDWQKCHKPESEFKG 69
            I       +K  LS       D     A + AI  + + ++  +L+             
Sbjct: 6   RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN----AGALKNLLE 61

Query: 70  HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +           PL  AA L   +IV +LL  G
Sbjct: 62  N---------EFPLHQAATLEDTKIVKILLFSG 85

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 25/102 (24%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
            +S +   I    V M+  LL      +          +  AI   +I +L+ +      
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK---- 216

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                      N        +  +    L   EI  +++E+ 
Sbjct: 217 -------YD-INIY------SANLENVLLDDAEIAKMIIEKH 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G +AL  A   +     K LL      +I+   G   LH A+  D   + ++++      
Sbjct: 57  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----- 111

Query: 62  KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
                     + +   +     TPL+LAA+L    ++  L+   
Sbjct: 112 ------NRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINSH 147

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A       M++ L++     +     G  ALH A   + ++   ++L     +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N 179

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               + +   N+ +     TPL LAA+ G  E   +LL+  
Sbjct: 180 GANKDMQ---NNREE----TPLFLAAREGSYETAKVLLDHF 213

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 9e-06
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G SAL  A   N+V     LL       ++       L  A +       K++LD    H
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD----H 212

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH 109
               +   H +         P  +A +    +IV LL    H   + H
Sbjct: 213 FANRDITDHMDR-------LPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 24/104 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             S +  A  +  V  V  L++       K+      L+ A +  +   +K +L+     
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE----- 211

Query: 62  KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G   +          +PL    +    E+  LL++ G
Sbjct: 212 ------SGADVNQGKGQD----SPLHAVVRTASEELACLLMDFG 245

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             S +  A I    + ++ L+S     +I   D    LH A     ++ +K++L      
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK----- 113

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G       ++      TPL  A   G  + V LLL+ G
Sbjct: 114 ------HGAQVNGVTADWH----TPLFNACVSGSWDCVNLLLQHG 148

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 27/98 (27%)

Query: 15  AIIKNDVMMVKYLLSL--------PSIKVRDGA--LHAIQCDEINILKLILDWQKCHKPE 64
               +       L+                DG+         +   ++L+          
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAG---PRDFPGIRLL---------- 48

Query: 65  SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                +    D     +P+  AA  G    +  L+ +G
Sbjct: 49  ----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G +    A I   V ++K  LS     +     G  A   A    ++  LK +       
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK----R 127

Query: 62  KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLL 99
                 +     +         T LM AA+ G +E++ +LL
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A+  +   +V+ LL     P ++ ++G      A     + +LKL L      
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS----- 93

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 KG     C+   F    T  M AA  G+++ +  L +RG
Sbjct: 94  ------KGADVNECDFYGF----TAFMEAAVYGKVKALKFLYKRG 128

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEIN----ILKLIL 55
            G +AL  A  K  V ++K LL      V      G  AL  A+   + +    I  L+L
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 56  DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           D    H  +   +G           TPL+LA +   L +V  LLE+ 
Sbjct: 207 D----HGADVNVRGERGK-------TPLILAVEKKHLGLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 37/95 (38%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
           G + L  A+ K  + +V+ LL       ++         EIN                  
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLE------QEHI-------EIND----------------- 248

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               +S+      T L+LA +L   +I  LL +RG
Sbjct: 249 ---TDSDGK----TALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 37/95 (38%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
               L  A+   DV +V+ LL         GA         N+                 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG-------GA---------NV----------------- 31

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               N  +     TPL  A Q+ R +IV LLL  G
Sbjct: 32  ----NFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 22/117 (18%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILD----- 56
           G   L  A     + + +YL+S          +G   L  A +     +L+  ++     
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 57  --------WQKCHKPESEF--KGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
                    +   +   ++   GH N     K   T L +AA  G  E++ LL++  
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 25/102 (24%)

Query: 11  ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
               A    D   V  LL      +    DG  ALH A   D ++++K +++        
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-------- 94

Query: 65  SEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               G      ++  +     PL  AA  G L+I   L+ +G
Sbjct: 95  ---NGANINQPDNEGW----IPLHAAASCGYLDIAEYLISQG 129

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 24/105 (22%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSLP-SIKVRDG----ALHAIQCDEINILKLILDWQKCH 61
           +     Q          ++  +      KV+       L A    +   +  +L+     
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE----- 61

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +G    + N +      T L  A     +++V  L+E G
Sbjct: 62  ------RGADINYANVDGL----TALHQACIDDNVDMVKFLVENG 96

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 23  MVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF 76
             ++L S         + G  ALH A       +LKL++      + +   K      D 
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIK----DYD- 231

Query: 77  PKCITPLMLAAQLGRLEIVALLLERG 102
               TPL  AA  G+ E   +L+E  
Sbjct: 232 --GWTPLHAAAHWGKEEACRILVENL 255

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A       M++ L++     +     G  ALH A   + ++   ++L     +
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N 147

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               + +   N+ +     TPL LAA+ G  E   +LL+  
Sbjct: 148 GANKDMQ---NNREE----TPLFLAAREGSYETAKVLLDHF 181

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G SAL  A   N+V     LL       ++       L  A +       K++LD    H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD----H 180

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               +   H +         P  +A +    +IV LL E  
Sbjct: 181 FANRDITDHMDR-------LPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G +AL  A   +     K LL      +I+   G   LH A+  D   + ++++      
Sbjct: 25  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR----- 79

Query: 62  KPESEFKGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
                     + +       TPL+LAA+L    ++  L+   
Sbjct: 80  ------NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 18/87 (20%)

Query: 23  MVKYLLS----LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND 75
           ++   +     L +   R G  ALH A +    +  K +L+       ++  +   ++  
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----ASADANIQ---DNMG 58

Query: 76  FPKCITPLMLAAQLGRLEIVALLLERG 102
                TPL  A       +  +L+   
Sbjct: 59  R----TPLHAAVSADAQGVFQILIRNR 81

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 25/107 (23%)

Query: 6   FQGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQK 59
              +  L  A +  ++ +V+  +     PS    +G  ALH AI     +I+  ++    
Sbjct: 19  LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT--- 75

Query: 60  CHKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                    G      +S+ +    TPL  AA      I   L++ G
Sbjct: 76  --------AGANVNSPDSHGW----TPLHCAASCNDTVICMALVQHG 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +V++LL     P +  +    AL  A      +I+K++LD     
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD----- 90

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G      + N      TPL+ A     ++ V +LLE G
Sbjct: 91  ------CGVDVNEYDWNGG----TPLLYAVHGNHVKCVKMLLESG 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             SAL  A  K    +VK LL      +    +G   L  A+  + +  +K++L+     
Sbjct: 69  RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE----- 123

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G        + +      + LA  LG   +  ++    
Sbjct: 124 ------SGADPTIETDSGY----NSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
              ++     + +++ +   +      +    +G   L  A    +I +++ +L     +
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ----N 58

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             + +              + L LA   G  +IV +LL+ G
Sbjct: 59  GADPQLL---GKGRE----SALSLACSKGYTDIVKMLLDCG 92

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS------LPSIKVRDG--ALH-AIQCDEINILKLILDWQ 58
           G   L  ++      +  +LLS      L       G    H A     + ++K + D  
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-- 93

Query: 59  KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +  KP+        +       T L LA      E+   L+E G
Sbjct: 94  RPLKPDLNKI---TNQGV----TCLHLAVGKKWFEVSQFLIENG 130

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 21/104 (20%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPS-----IKVRDG--ALH-AIQCDEINILKLILDWQK 59
           G +    A    ++ +VK L   P           G   LH A+      + + +++   
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE--- 128

Query: 60  CHKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                    G      D      PL  AA +G L+++ LL   G
Sbjct: 129 --------NGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 11  ALQTAIIKNDV-MMVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKP 63
            L  A ++N+   + + L S   L   K +DG   LH ++      I   +L        
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS----KME 60

Query: 64  ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 + + + +    TP  +A  +G LE+V  L +R 
Sbjct: 61  NVNLDDYPDDSGW----TPFHIACSVGNLEVVKSLYDRP 95

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
           QGV+ L  A+ K    + ++L+       IK +     LH A     + +++L+      
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG---- 161

Query: 61  HKPESEFKGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLER 101
                   G    N   K   TPL  A   G  +   LL+E+
Sbjct: 162 -------LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
            ++ L  + ++ +  +V+ ++     PS+   +G  ALH A+      I+K ++      
Sbjct: 37  PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ----- 91

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G      +S+ +    TPL  AA    +++   L+E G
Sbjct: 92  ------FGVNVNAADSDGW----TPLHCAASCNNVQVCKFLVESG 126

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 14/104 (13%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G++AL  A+      +VK+L+      +    DG   LH A  C+ + + K +++     
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE----S 125

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
                       +D            + G  +    L      +
Sbjct: 126 GAAVFAM---TYSDMQTA-ADKCEEMEEGYTQCSQFLYGVQEKM 165

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 24/104 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG---ALH-AIQCDEINILKLILDWQKCHK 62
           G  +L      N        ++    +K        L  +    E ++++ I+       
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY------ 58

Query: 63  PESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                +       N       IT L  A   G  EIV  L++ G
Sbjct: 59  -----EVDDPSLPNDEG----ITALHNAVCAGHTEIVKFLVQFG 93

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 11  ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHKPES 65
            L +A  + D+  +  LL      + +   G  AL  ++     I + +L          
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL----RGANP 63

Query: 66  EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           + K   +   F      +  AA+ G L+ +  LLE  
Sbjct: 64  DLK---DRTGF----AVIHDAARAGFLDTLQTLLEFQ 93

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 22/104 (21%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + +  A     +  ++ LL      +I+  +G   LH A +   + +++ ++      
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK----- 124

Query: 62  KPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
                     N     +     T   LA   GR E+V+L+   G
Sbjct: 125 ------HTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 18/101 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G +ALQ      +  + + LL     P +K R G   +H A +   ++ L+ +L+     
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE----F 92

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           + +   +   ++        PL LAA+ G L +V  L++  
Sbjct: 93  QADVNIE---DNEGN----LPLHLAAKEGHLRVVEFLVKHT 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDG------ALH-AIQCDEINILKLILDWQKC 60
               L  A    DV  VK L ++ S+  RD        LH A   + +++++ +L     
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ---- 63

Query: 61  HKPESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   G   ++ D      PL  A   G  E+  LL++ G
Sbjct: 64  -------HGADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHG 98

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 29/111 (26%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSI------KVRDG--ALH-AIQC---DEINILKL-- 53
             SAL  A    D  M+ Y+L+   +        R+G  AL         D++   KL  
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258

Query: 54  -----ILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
                +       K   ++KG           T L  AAQ+  + IV  L+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGR----------TALHYAAQVSNMPIVKYLV 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
           G +AL  A   +++ +VKYL+            DG   +  A Q   I ++  ++     
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ---- 334

Query: 61  HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                E     ++ D     T   LA       IV +     
Sbjct: 335 QGASVEAV---DATDH----TARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 17/97 (17%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS---LPSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
            +          +  +  +  +   +P+    +    LH        I + I        
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR------ 114

Query: 63  PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLL 99
                +   N  D     T L   A     E    L+
Sbjct: 115 -----ES-VNIIDPRHNRTVLHWIASNSSAEKSEDLI 145

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 27/112 (24%)

Query: 8   GVSALQTAIIKN---DVMMVKYLLS-----------LPSIKVRDG--ALH-AIQCDEINI 50
           G++AL           V   K L+                +   G  ALH A Q   + I
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 51  LKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           +K ++  +  +K + +  G           TP+MLAAQ GR+E+V  L+++G
Sbjct: 295 VKYLVGEKGSNKDKQDEDGK----------TPIMLAAQEGRIEVVMYLIQQG 336

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 22/105 (20%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
           +G + L  A+  ND+ + K L+      +++          A       IL  +L     
Sbjct: 38  EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK---- 93

Query: 61  HKPESEFKGHCNSNDFPKCI---TPLMLAAQLGRLEIVALLLERG 102
                      + N           L+ AA+ G ++ V LLLE G
Sbjct: 94  -------HATPDLNK--HNRYGGNALIPAAEKGHIDNVKLLLEDG 129

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             + L+ A  ++   + + L            +G   L+ A+  ++I I K ++D     
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID----R 61

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   +   NS       +P + A   GR EI+A +L+  
Sbjct: 62  GADINLQ---NSISD----SPYLYAGAQGRTEILAYMLKHA 95

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 32/112 (28%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL----PSIKVRDG--ALH-AIQCDEINILKLILDWQKC 60
             S    A  +    ++ Y+L       +   R G  AL  A +   I+ +KL+L+    
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE---- 127

Query: 61  HKPESEFKG-----HCNSNDFPKCITPLMLAAQL-----GRLEIVALLLERG 102
                   G       N   +    T L+ A  L        +IV LL+E G
Sbjct: 128 -------DGREDIDFQNDFGY----TALIEAVGLREGNQLYQDIVKLLMENG 168

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 23/105 (21%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEIN-----ILKLIL 55
           G +AL  A  K  +  VK LL      +      G  AL  A+   E N     I+KL++
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 56  DWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
           +    +  +   K     N      T +  A Q G  EI  +L +
Sbjct: 166 E----NGADQSIK----DNS---GRTAMDYANQKGYTEISKILAQ 199

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALHAIQCDEINILKLILDWQKCHK 62
             + L TA  +  V  V+ LL     P+   R G   +  +      + +L+L       
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL------ 65

Query: 63  PESEFKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 G   N  D      P+  AA+ G L+ + +L   G
Sbjct: 66  -----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 27/106 (25%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
           G   +Q  +      + + LL     P+          +H A +   ++ L ++      
Sbjct: 45  GRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR---- 99

Query: 61  HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   G     C++        P+ LA + G  +I   L    
Sbjct: 100 -------AGARLDVCDAWGR----LPVDLAEEQGHRDIARYLHAAT 134

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.3 bits (106), Expect = 7e-06
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKV----RDG--ALH-AIQCDEINILKLILDWQKC 60
            +  + T   + + + V+  L      +      G   LH A +     ++++++     
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM---- 60

Query: 61  HKPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  +G   +  +       TPL LAA  G  +IV  LL+  
Sbjct: 61  -------RGARINVMNRG---DDTPLHLAASHGHRDIVQKLLQYK 95

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 25/108 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             + L  A       +V+ LL      +     G   LH A    +  + + ++      
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----- 126

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCI 105
                  G     CN         P+  A    R  +     + G  +
Sbjct: 127 ------NGALVSICNKYGE----MPVDKAKAPLRELLRERAEKMGQNL 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 27/106 (25%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG---ALH-AIQCDEINILKLILDWQKC 60
           G   +Q  +      + + LL     P+          +H A +   ++ L ++      
Sbjct: 45  GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR---- 99

Query: 61  HKPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                   G      ++        P+ LA +LG  ++   L    
Sbjct: 100 -------AGARLDVRDAWGR----LPVDLAEELGHRDVARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
             L  AA  GR+E V  LLE G
Sbjct: 14  DWLATAAARGRVEEVRALLEAG 35

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A        VK LLS     + + +DG   LH A +     I+KL+L      
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA----K 64

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   +   + +      TP  LA + G  EIV LL  +G
Sbjct: 65  GADVNAR---SKDGN----TPEHLAKKNGHHEIVKLLDAKG 98

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G +AL  A+  N + + + LLS     + K   G   L  +I      +   +L+    H
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE----H 123

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +   N        TPL++A++ GR EIV  LLE G
Sbjct: 124 GANVNDR---NLEGE----TPLIVASKYGRSEIVKKLLELG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 3e-05
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +V+ LL      +     G   L  A     + I++++L     +
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK----N 102

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +       +        TPL LAA  G LEIV +LL+ G
Sbjct: 103 GADVNAN---DMEGH----TPLHLAAMFGHLEIVEVLLKNG 136

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 11  ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
            L  A        V+ L++     + +   G   LH A     + I++++L     +  +
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK----NGAD 72

Query: 65  SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  +        TPL LAA  G LEIV +LL+ G
Sbjct: 73  VNAV---DHAGM----TPLRLAALFGHLEIVEVLLKNG 103

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 25/105 (23%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL----PSIKVRDG--ALHAIQCDEINILKLILDWQKCH 61
               L  A  + DV  V+ LL      P    R G  AL  +      I   +L      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK----- 56

Query: 62  KPESEFKG----HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +G      +++      +P+  AA+ G L+ + +L+E G
Sbjct: 57  ------QGASPNVQDTSGT----SPVHDAARTGFLDTLKVLVEHG 91

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALH-AIQCDEINILKLILDWQKCHKPESE 66
            +  +  A   ++   V  L++          L   I+ ++  +L  I        P  +
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR--FLLSIPGIK 307

Query: 67  FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                 +         L LA +LG     ALLL   
Sbjct: 308 ALAPTATIP-GDANELLRLALRLGNQGACALLLSIP 342

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 23  MVKYLLS---LPSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF 76
            +  LL+   +  +   +   A   A +   +++L  + +      P          N  
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAENY- 164

Query: 77  PKCITPLMLAAQLGRLEIVALLLERG 102
                   LAA+ G L ++  L E  
Sbjct: 165 ----HAFRLAAENGHLHVLNRLCELA 186

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.6 bits (94), Expect = 8e-05
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 23/104 (22%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +VK LL      + K ++G   LH A +   + ++KL+L+     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56

Query: 62  KPESEFKG---HCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G   +    +     TPL LAA+ G LE+V LLLE G
Sbjct: 57  ------AGADVNAKDKN---GRTPLHLAARNGHLEVVKLLLEAG 91

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 15/22 (68%), Positives = 17/22 (77%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           TPL LAA+ G LE+V LLLE G
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAG 80

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
             L+ AA+ G+ + V +L+  G
Sbjct: 26  KKLLEAARAGQDDEVRILMANG 47

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.0 bits (95), Expect = 1e-04
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +VK LL      + K ++G   LH A +   + ++KL+L+     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----A 57

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   K   + N      TPL LAA+ G LE+V LLLE G
Sbjct: 58  GADVNAK---DKNGR----TPLHLAARNGHLEVVKLLLEAG 91

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G + L  A     + +VK LL      + K ++G   LH A +   + ++KL+L+     
Sbjct: 35  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----A 90

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   K   + N      TPL LAA+ G LE+V LLLE G
Sbjct: 91  GADVNAK---DKNGR----TPLHLAARNGHLEVVKLLLEAG 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
           G S L  A         + LL        + +     LH A      NI++++L     H
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK----H 89

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
             +   K   +        T L  A +    E+V LL++ G
Sbjct: 90  GADVNAK---DMLKM----TALHWATEHNHQEVVELLIKYG 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 11  ALQTAIIKNDVMMVKYLLSL--PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPES 65
            L  A        V+ L++   P      G   LH A Q    +  +++L          
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR----AGVSR 60

Query: 66  EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
           + +      D     TPL +AA  G   IV +LL+ G
Sbjct: 61  DAR---TKVDR----TPLHMAASEGHANIVEVLLKHG 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 17/98 (17%)

Query: 11  ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
            L  A        V+ L++     + K   G   L+ A     + I++++L     +  +
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK----NGAD 72

Query: 65  SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  ++  F    TPL LAA +G LEI  +LL+ G
Sbjct: 73  VNAV---DAIGF----TPLHLAAFIGHLEIAEVLLKHG 103

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 2/22 (9%), Positives = 8/22 (36%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           T L    +  +   + ++ +  
Sbjct: 156 TALEFVKRCQKPIALKMMEDYI 177

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 38/95 (40%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
            +     A       + + +L+       D +                            
Sbjct: 7   NIMICNLAYSGKLDELKERILA-------DKS-------LATR----------------- 35

Query: 68  KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
               + +      T L  A   G  EIV  LL+ G
Sbjct: 36  ---TDQDSR----TALHWACSAGHTEIVEFLLQLG 63

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCH 61
             +AL  A       +V++LL L    + K   G   LH A       I+K +L  +  H
Sbjct: 40  SRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAH 98

Query: 62  KPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                  G           TPL  AA   R EI  +LLE G
Sbjct: 99  VNAVNQNGC----------TPLHYAASKNRHEIAVMLLEGG 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.8
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.8
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.8
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.79
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.79
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.79
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.77
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.76
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.75
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.75
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.75
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.75
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.75
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.74
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.74
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.74
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.74
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.74
2rfa_A	232	Transient receptor potential cation channel subfa	99.74
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.74
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.74
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.74
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.73
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.73
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.73
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.73
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.73
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.73
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.72
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.72
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.72
2etb_A	256	Transient receptor potential cation channel subfam	99.72
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
2rfa_A	232	Transient receptor potential cation channel subfa	99.71
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.71
2etb_A	256	Transient receptor potential cation channel subfam	99.71
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.71
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.7
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.7
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.7
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.7
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.7
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.69
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.69
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.69
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.69
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.69
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.69
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.69
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.69
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.69
2pnn_A	273	Transient receptor potential cation channel subfa	99.69
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.69
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.68
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.68
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.68
2pnn_A	273	Transient receptor potential cation channel subfa	99.68
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.68
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.67
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.66
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.66
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.66
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.66
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.65
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.65
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.65
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.65
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.64
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.64
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.63
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.63
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.63
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.63
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.62
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.62
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.61
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.61
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.6
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.6
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.59
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.58
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.55
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.54
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.54
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.49
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.46
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.45
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.31
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.22
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	96.68
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	96.51
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	93.67
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	82.35

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=1.8e-21  Score=153.87  Aligned_cols=104  Identities=24%  Similarity=0.227  Sum_probs=80.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ..+|.+|+||||.|+..++.++++.|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-----------gadvn~   98 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-----------GADVNA   98 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC-----------cCCCCC
Confidence            46778888888888888888888888887 5554      678887 8888888888888887           556666


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ++..|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus        99 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  141 (169)
T 4gpm_A           99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD  141 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            7777778888888888888888888888777777776666654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.84  E-value=1e-20  Score=149.47  Aligned_cols=96  Identities=27%  Similarity=0.275  Sum_probs=78.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++      |+|||| |+..|+.+++++|+++           |++.+.
T Consensus        64 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-----------gad~~~  131 (169)
T 4gpm_A           64 NAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-----------GADVNT  131 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             hhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCccc
Confidence            45788999999999999999999999998 6665      789998 9999999999999998           677788


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      ++..|.||||+|++.|+.+++++|+++||+++..+
T Consensus       132 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~~  166 (169)
T 4gpm_A          132 SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHHH  166 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTC--------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCCC
Confidence            89999999999999999999999999999988654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=2e-20  Score=132.60  Aligned_cols=86  Identities=35%  Similarity=0.450  Sum_probs=78.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      +|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.++..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-----------ga~~~~~d~~g   68 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADVNAKDKNG   68 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCTTS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCccCCCC
Confidence            589999999999999999999998 6654      789999 9999999999999999           67778889999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          80 ITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .||||+|+..|+.+++++|+++|++
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           69 RTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=6e-20  Score=139.11  Aligned_cols=106  Identities=25%  Similarity=0.270  Sum_probs=96.4

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----------g~~~~~~   72 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-----------KALVNTT   72 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCcccCc
Confidence            4689999999999999999999999998 6654      789999 9999999999999999           6677788


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                      +..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.+.
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            889999999999999999999999999999999888888877443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=1.7e-19  Score=134.20  Aligned_cols=104  Identities=24%  Similarity=0.223  Sum_probs=91.9

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .+..|.||||.|+.+|+.++++.|+++ +.++      |.|||| |+..|+.+++++|+++           |.+.+.++
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~d   70 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-----------GADINAPD   70 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT-----------TCCTTCCC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc-----------CCCCCcCC
Confidence            356799999999999999999999998 5554      789999 9999999999999998           67778889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      ..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.+
T Consensus        71 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            9999999999999999999999999999999888888887744

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=153.82  Aligned_cols=115  Identities=21%  Similarity=0.169  Sum_probs=91.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      ...|.+|+||||+|+.+|+.+++++|++. ++++      |.||+| |+..++.++++.|+++|++++...         
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~  158 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY  158 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            46788999999999999999999999988 5554      667777 777888888888887766543210         


Q ss_pred             -------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 -------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 -------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                   ...|++.+..+..|.||||+|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       159 A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             HHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred             HHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence                         0136777788888888888888888888888888888888888877777776

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.80  E-value=8.8e-20  Score=138.23  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=94.1

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      +...|..|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+. |+.+++++|+++           |.+.+
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-----------g~~~~   71 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-----------GAEPN   71 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-----------TCCSS
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-----------CCCCC
Confidence            356789999999999999999999999998 6654      789999 999 999999999998           66777


Q ss_pred             CCCCC-CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          74 NDFPK-CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        74 ~~~~~-g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .++.. |.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus        72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  116 (136)
T 1d9s_A           72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD  116 (136)
T ss_dssp             CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHH
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            78888 999999999999999999999999999988887777765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=5.5e-20  Score=135.14  Aligned_cols=100  Identities=28%  Similarity=0.258  Sum_probs=89.7

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|++|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-----------g~~~~~~   71 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-----------GADVNAR   71 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-----------TCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-----------CCCCccc
Confidence            5799999999999999999999999998 5554      789999 9999999999999998           6677788


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                      +..|.||||+|+..|+.+++++|+++|++++.....+..
T Consensus        72 d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~  110 (115)
T 2l6b_A           72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH  110 (115)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccc
Confidence            899999999999999999999999999999866554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.80  E-value=6e-19  Score=137.56  Aligned_cols=104  Identities=25%  Similarity=0.204  Sum_probs=86.5

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.+
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~  104 (165)
T 3twr_A           37 DIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----------GAVVNVA  104 (165)
T ss_dssp             CTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCC
T ss_pred             ccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhC-----------CCCCCCc
Confidence            3466778888888888888888888887 5544      678888 8888888888888888           6667778


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      +..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.
T Consensus       105 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  147 (165)
T 3twr_A          105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL  147 (165)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence            8889999999999999999999999999999888888887774

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.80  E-value=4.7e-19  Score=140.23  Aligned_cols=105  Identities=18%  Similarity=0.117  Sum_probs=93.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~  100 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-----------KADINA  100 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCc
Confidence            45688899999999999999999999998 6655      779999 9999999999999998           667778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.++.+.
T Consensus       101 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  144 (179)
T 3f6q_A          101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK  144 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHH
Confidence            88899999999999999999999999999999888888887763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.80  E-value=3e-19  Score=137.77  Aligned_cols=103  Identities=20%  Similarity=0.189  Sum_probs=92.7

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|..|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.++
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~   97 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-----------GADVNAKD   97 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-----------TCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHc-----------CCCCCCCC
Confidence            478899999999999999999999998 5554      789999 9999999999999998           66777888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      ..|.||||.|+..|+.+++++|+++|++++..+..+.++.+.
T Consensus        98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  139 (153)
T 1awc_B           98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            999999999999999999999999999999888877777653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.79  E-value=3.9e-19  Score=139.54  Aligned_cols=103  Identities=21%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+..
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~   98 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLER-----------DVDINIY   98 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-----------TCCTTCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHc-----------CCCCCCC
Confidence            4688899999999999999999999988 5554      779999 9999999999999998           6677788


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++.+
T Consensus        99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            889999999999999999999999999999988877777765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.79  E-value=6.8e-19  Score=138.11  Aligned_cols=104  Identities=25%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----------g~~~~~  108 (169)
T 2y1l_E           41 NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-----------GADVNA  108 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCC
Confidence            34677888888888888888888888887 5544      678888 8888888888888887           666777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       109 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  151 (169)
T 2y1l_E          109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD  151 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            7888899999999999999999999999998887777777665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.79  E-value=4.7e-19  Score=138.43  Aligned_cols=104  Identities=23%  Similarity=0.210  Sum_probs=85.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~   97 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLLDC-----------GVDVNE   97 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-----------TCCTTC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC-----------CCCCCc
Confidence            35677888888888888888888888887 5544      668888 8888888888888887           666777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.++.+
T Consensus        98 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  140 (167)
T 3v31_A           98 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD  140 (167)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            7888899999999999999999999999998888777777665

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.78  E-value=7.7e-19  Score=147.78  Aligned_cols=108  Identities=21%  Similarity=0.193  Sum_probs=88.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|..|+||||+|+.+|+.+++++|+++ |+++       |.|||| |+..|+.+++++|+++           |.+.+
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----------gad~~  219 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-----------GADPT  219 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-----------CCCCc
Confidence            35688999999999999999999999998 5543       789999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccccc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQN  121 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~~  121 (256)
                      .++..|.||||+|+..|+.+++++|+++|++++..+..+.++.+....
T Consensus       220 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             ccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            889999999999999999999999999999999998888888764433

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=6.3e-19  Score=133.49  Aligned_cols=102  Identities=23%  Similarity=0.158  Sum_probs=91.1

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFP   77 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      +..|.||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+..+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~d~   78 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-----------GADVNAVDA   78 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCT
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCcCCC
Confidence            45678999999999999999999998 6554      789999 9999999999999999           667778888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      .|.||||.|+..|+.+++++|+++|++++..+..+.++...
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~  119 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI  119 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHH
Confidence            99999999999999999999999999999888777777653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.78  E-value=9.6e-19  Score=139.84  Aligned_cols=114  Identities=23%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ..|.+|+||||.|+..|+.+++++|+++ +.++      |.|||| |+..|+.+++++|+++|++.+...          
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4566667777777777777777776665 3332      556666 666666667766666643321100          


Q ss_pred             ------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 ------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 ------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                  ...|.+.+.++..|.||||+|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA  172 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence                        0014445555556666666666666666666666666666655555555443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.77  E-value=3e-18  Score=129.67  Aligned_cols=89  Identities=18%  Similarity=0.128  Sum_probs=81.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~  108 (136)
T 2jab_A           41 NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-----------GADVNA  108 (136)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCcC
Confidence            45788999999999999999999999998 6654      789999 9999999999999999           667778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERG  102 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~g  102 (256)
                      ++..|.||||+|+..|+.+++++|++.|
T Consensus       109 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          109 QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8899999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.76  E-value=2.6e-18  Score=127.24  Aligned_cols=99  Identities=30%  Similarity=0.360  Sum_probs=88.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      +|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.++..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----------g~~~~~~~~~g   68 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADVNAKDKNG   68 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCTTS
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-----------CCCCcccCCCC
Confidence            589999999999999999999998 5544      789999 9999999999999998           66677788889


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          80 ITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  106 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH  106 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99999999999999999999999999988777777765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.75  E-value=8.3e-18  Score=137.36  Aligned_cols=115  Identities=16%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCC--CCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc--------
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPS--IKV------RDGALH-AIQCDEINILKLILDWQKCHKPESE--------   66 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~--~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~--------   66 (256)
                      .|..|+||||.|+..|+.+++++|+++ +  .++      |.|||| |+..|+.+++++|+++|++.+....        
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  146 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR  146 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHH
Confidence            566777777777777777777777776 3  332      667777 7777777777777777655432100        


Q ss_pred             --------------ccC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HCCCCCCCCCCCCCcccccc
Q psy4451          67 --------------FKG-HCNSNDFPKCITPLMLAAQLGRLEIVALLL-ERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        67 --------------~~~-~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll-~~ga~i~~~~~~~~~~~~~~  119 (256)
                                    ..| .+.+.++..|.||||.|+..|+.+++++|+ +.|++++..+..+.++.+.+
T Consensus       147 A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence                          124 666777888888888888888888888888 77888888877777777644

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.75  E-value=5.4e-18  Score=131.45  Aligned_cols=103  Identities=18%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||.|+. |+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~   98 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-----------QADVNI   98 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTC
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCC
Confidence            3567889999999998 999999999988 5554      778998 9999999999999998           666777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCC-CCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHC-IPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~-i~~~~~~~~~~~~  117 (256)
                      ++..|.||||.|+..|+.+++++|+++|++ ++..+..+.++..
T Consensus        99 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  142 (162)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence            788889999999999999999999999987 5777766777655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.75  E-value=7.6e-18  Score=124.66  Aligned_cols=91  Identities=33%  Similarity=0.372  Sum_probs=83.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|.||||.|+..++.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        29 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-----------g~~~~~   96 (126)
T 1n0r_A           29 NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADVNA   96 (126)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHc-----------CCCCcc
Confidence            34688999999999999999999999998 5554      789999 9999999999999999           667778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      ++..|.||++.|+..|+.+++++|+++|++
T Consensus        97 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           97 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            889999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.75  E-value=2.9e-18  Score=132.83  Aligned_cols=102  Identities=20%  Similarity=0.147  Sum_probs=87.1

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..++.|.||||.|+..|+.+++++|+++ ++++      |.|||| | ..|+.+++++|+++           |.+.+.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A-~~~~~~~v~~Ll~~-----------g~~~~~~   73 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVM-MMGSARVAELLLLH-----------GAEPNCA   73 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTT-----------TCCCCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH-HcCCHHHHHHHHHc-----------CCCCCCc
Confidence            3578899999999999999999999998 6654      789999 6 59999999999998           6677778


Q ss_pred             CCCCCc-HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          76 FPKCIT-PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        76 ~~~g~T-pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..|.| |||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus        74 d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  116 (156)
T 1bi7_B           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD  116 (156)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHH
T ss_pred             CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            888888 999999999999999999999999888777777655

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.75  E-value=9e-19  Score=135.71  Aligned_cols=101  Identities=14%  Similarity=0.043  Sum_probs=80.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chh-HHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDG-ALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t-~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|..|+||||+|+ +|+.+++++|+++ |+++      |.| ||| |+..|+.+++++|+++           |.+.+
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-----------ga~~~  105 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARLD  105 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-----------TCCSS
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-----------CCCCc
Confidence            457889999999996 9999999999998 6655      677 999 9999999999999999           67778


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQC  115 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~  115 (256)
                      .++..|.||||+|+..|+.+++++|+++|++++..+..+.+.
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B          106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            888999999999999999999999999999999776655444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.75  E-value=3.3e-18  Score=132.70  Aligned_cols=99  Identities=18%  Similarity=0.079  Sum_probs=81.3

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      +...||||.|+.+|+.++++.|+++ ++++      |.|||| |+. |+.+++++|+++           |.+.+..+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-----------g~~~~~~~~~   69 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-----------GANPDLKDRT   69 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-----------TCCTTCCCTT
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHc-----------CCCCCCCCCC
Confidence            4467899999999999999999987 5544      778998 777 999999999988           6666777888


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |.||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  108 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH  108 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            899999999999999999999999998888777777654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.74  E-value=4.1e-18  Score=139.36  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|..|+||||.|+.+|+.++++.|++. ++++      |.|||| |+..|+.+++++|+++          .|.+.+.++
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------~g~~~~~~d  137 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ----------PNIELNQQN  137 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS----------TTCCCCCCC
T ss_pred             cccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC----------CCCCccccC
Confidence            356789999999999999999999998 5554      789999 9999999999999987          356677888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      ..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.+
T Consensus       138 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  180 (222)
T 3ehr_A          138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA  180 (222)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence            9999999999999999999999999999999888888877633

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.74  E-value=1.1e-18  Score=132.11  Aligned_cols=90  Identities=17%  Similarity=0.073  Sum_probs=82.7

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||+|+. |+.+++++|+++ ++++       |.|||| |+..|+.+++++|+++           |.+.+
T Consensus        39 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------ga~~~  105 (136)
T 1d9s_A           39 NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARLD  105 (136)
T ss_dssp             TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-----------CCCCC
T ss_pred             CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCC
Confidence            4578999999999999 999999999998 5554       689999 9999999999999999           67778


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .++..|.||||+|+..|+.+++++|+++|+|
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          106 VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8889999999999999999999999999986

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.74  E-value=2e-18  Score=137.31  Aligned_cols=105  Identities=20%  Similarity=0.129  Sum_probs=91.5

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC-CC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF-PK   78 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~   78 (256)
                      |.+|+||||.|+.+|+.++++.|++..+++.    |.|||| |+..|+.+++++|+++           |.+.+..+ ..
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-----------ga~~~~~~~~~  109 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GADLDHRDMRG  109 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCSSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCcCCCCC
Confidence            5678999999999999999999998322222    889999 9999999999999999           66666666 78


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                      |.||||+|+..|+.+++++|+++|++++..+..+.++...+.
T Consensus       110 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999888888876443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.74  E-value=1.6e-17  Score=136.59  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      |..|+||||.|+..|+.+++++|+++ ++++       |.|||| |+..|+.+++++|+++           |.+.+.++
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~  180 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-----------GANVNAQM  180 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCBC
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc-----------CCCCCCcC
Confidence            34444555555555555555555444 2221       344554 5555555555555544           66677777


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      ..|.||||.|+..|+.+++++|+++|++++..+..+.++.+.
T Consensus       181 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            888888888888888888888888888888777777777653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.74  E-value=5.1e-18  Score=141.58  Aligned_cols=115  Identities=16%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ..|.+|+||||+|+..|+.+++++|++++..++      |.|||| |+..|+.+++++|+++|++.+...          
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            456777777777777777777777777632122      567776 777777777777777644332110          


Q ss_pred             ------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 ------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 ------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                  ...|.+.+.++..|.||||+|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence                        0025555566666666666666666666666666666666666655555554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.74  E-value=8.2e-18  Score=138.01  Aligned_cols=115  Identities=22%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCC-----------CchhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc--c
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIK-----------VRDGALH-AIQCDEINILKLILDWQKCHKPESE--F   67 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~-----------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~--~   67 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ +.+           .|.|||| |+..|+.+++++|+++|++.+....  .
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  109 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSV  109 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc
Confidence            45688899999999999999999999987 443           2779998 9999999999999999776543211  1


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          68 KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        68 ~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .....+..+..|.||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus       110 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~  159 (232)
T 2rfa_A          110 FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH  159 (232)
T ss_dssp             GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            12233445668999999999999999999999999999988888887765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.74  E-value=1.6e-17  Score=136.09  Aligned_cols=115  Identities=23%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      ...|..|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++|++.+...         
T Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  145 (231)
T 3aji_A           67 NDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR  145 (231)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            34677888888888888888888888887 5544      678888 888888888888888865543210         


Q ss_pred             -------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 -------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 -------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                   ...|.+.+.++..|.||||.|+..|+.+++++|+++|++++.++..+.++.+
T Consensus       146 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  210 (231)
T 3aji_A          146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ  210 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence                         0125556666667777777777777777777777777777666666665554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=1.9e-17  Score=136.37  Aligned_cols=115  Identities=19%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC----------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPE----------   64 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~----------   64 (256)
                      ...|..|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|++++++....          
T Consensus        39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  117 (236)
T 1ikn_D           39 NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  117 (236)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCC
Confidence            34667788888888888888888888877 5544      667787 77888888888887776532100          


Q ss_pred             ------------------ccccCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          65 ------------------SEFKGHCNSNDFP-KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        65 ------------------~~~~~~~~~~~~~-~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                        ....|.+.+..+. .|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHH
Confidence                              0012555666665 6777777777777777777777777777766666666554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.74  E-value=6.5e-18  Score=130.33  Aligned_cols=103  Identities=18%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||. +.+|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~   96 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-----------GADVNV   96 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCSCC
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-----------CCCCCC
Confidence            3467889999999 888999999999988 5554      778998 9999999999999988           666777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      ++..|.||||.|+..|+.+++++|++. ++++..+..+.++...
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~  139 (156)
T 1bd8_A           97 PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL  139 (156)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHH
Confidence            788889999999999999999999988 8888877777776653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.74  E-value=4.4e-18  Score=135.97  Aligned_cols=99  Identities=15%  Similarity=0.039  Sum_probs=64.9

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCCchhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHH
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLM   84 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~   84 (256)
                      +.|++.-+++....-.+..+.+.+. .-..|.|||| |+..|+.++++.|+++           +.+.+..+..|.||||
T Consensus         6 ~~~~~~~~~~~~~~i~~~~~~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----------~~~~~~~~~~g~t~L~   73 (192)
T 2rfm_A            6 KNGEIVEKIKDEKSINQNLDFLRNY-RDSYNRTPLMVACMLGMENAIDKLVEN-----------FDKLEDKDIEGSTALI   73 (192)
T ss_dssp             ----CGGGGSSHHHHHHTHHHHHTC-CCTTCCCHHHHHHHHTCGGGHHHHHHH-----------HCCTTCCCTTSCCHHH
T ss_pred             ccccHHHHhhhhhhhhhhhHHHHhC-cCCCCCCHHHHHHHcCCHHHHHHHHHh-----------ccccccccccCccHHH
Confidence            3444443333222222334455544 2344899999 9999999999999998           5555566667777777


Q ss_pred             HHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          85 LAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        85 lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      .|+..|+.+++++|++.|++++.++..+.++.
T Consensus        74 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           74 WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            77777777777777777777776666666554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.73  E-value=8.1e-18  Score=142.64  Aligned_cols=104  Identities=23%  Similarity=0.226  Sum_probs=77.5

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCC-CC--------------------------------------------c
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSI-KV--------------------------------------------R   36 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~-~~--------------------------------------------g   36 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+ ++                                            |
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            45789999999999999999999999998 43 22                                            3


Q ss_pred             hhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCc
Q psy4451          37 DGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQ  114 (256)
Q Consensus        37 ~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~  114 (256)
                      .|||| |+..|+.+++++|+++           |.+.+.++..|.||||+|+..|+.+++++|++ .|++++..+..+.+
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~-----------gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~T  252 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLAC-----------EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGST  252 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC-----------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCC
Confidence            45666 6666666666666666           55666677777777777777777777777777 67777777666666


Q ss_pred             ccc
Q psy4451         115 CVQ  117 (256)
Q Consensus       115 ~~~  117 (256)
                      +..
T Consensus       253 pL~  255 (276)
T 4hbd_A          253 ALM  255 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.73  E-value=1.5e-17  Score=135.42  Aligned_cols=113  Identities=16%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc---------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESE---------   66 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~---------   66 (256)
                      ..|.+|+||||.|+..|+.+++++|++++..++      |.|||| |+..|+.++++.|+++|++.+....         
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  132 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  132 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence            456778888888888888888888887632122      667887 8888888888888877443221000         


Q ss_pred             -------------ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcc
Q psy4451          67 -------------FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQC  115 (256)
Q Consensus        67 -------------~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~  115 (256)
                                   ..|.+.+.++..|.||||.|+..|+.+++++|+++|++++..+..+.++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  194 (223)
T 2f8y_A          133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP  194 (223)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH
Confidence                         0134444445555555555555555555555555555555444444433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.73  E-value=2.8e-17  Score=139.74  Aligned_cols=60  Identities=27%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHK   62 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~   62 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++|++.+
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  133 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG  133 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            46788999999999999999999999998 6655      789999 999999999999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.73  E-value=2.4e-17  Score=135.54  Aligned_cols=115  Identities=21%  Similarity=0.146  Sum_probs=77.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ..|..|.||||.|+..|+.+++++|++++..++      |.|||| |+..|+.+++++|+++|++.+...          
T Consensus        72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  151 (237)
T 3b7b_A           72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA  151 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence            456778888888888888888888887732332      667887 888888888888888755432110          


Q ss_pred             ------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 ------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 ------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                  ...|.+.+..+..|.||||.|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       152 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  215 (237)
T 3b7b_A          152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ  215 (237)
T ss_dssp             HHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHH
Confidence                        0125555666666777777777777777777777777777666666666555

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.73  E-value=8.5e-18  Score=131.84  Aligned_cols=100  Identities=19%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||+|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        63 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------ga~~~~  130 (172)
T 3v30_A           63 HILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-----------GADLTT  130 (172)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             hhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCccc
Confidence            45688999999999999999999999998 6654      789999 9999999999999999           677778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC  113 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~  113 (256)
                      ++..|.||||+|+..|+.+++++|+++|+++..+...+.
T Consensus       131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~  169 (172)
T 3v30_A          131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA  169 (172)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-----
T ss_pred             cCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCC
Confidence            889999999999999999999999999998776654433

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.73  E-value=1.7e-17  Score=137.58  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=87.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      ..|.||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.++..
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~~~d~~  102 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-----------GVNVNAADSD  102 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-----------TCCTTCCCTT
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCccCCC
Confidence            4578999999999999999999988 5554      789999 9999999999999998           7778888999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC-cccccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC-QCVQVC  119 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~-~~~~~~  119 (256)
                      |.||||.|+..|+.+++++|+++|++++.....+. ++...|
T Consensus       103 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B          103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence            99999999999999999999999999997765554 555533

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.72  E-value=2.3e-17  Score=136.19  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .+..|.||||.|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+..+
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-----------ga~~n~~d   84 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITA-----------GANVNSPD   84 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCC
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCCC
Confidence            355677899999999999999999998 5554      789999 9999999999999999           67777888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC-CCCCccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPH-LPTCQCVQV  118 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~-~~~~~~~~~  118 (256)
                      ..|.||||+|+..|+.+++++|++.|++++... ..+.++...
T Consensus        85 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  127 (229)
T 2vge_A           85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK  127 (229)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHH
Confidence            899999999999999999999999999999875 367777663

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.72  E-value=6.2e-18  Score=140.81  Aligned_cols=105  Identities=20%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC-CC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF-PK   78 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~   78 (256)
                      +.+|+||||.|+.+|+.++++.|++..+++.    |.|||| |+..|+.+++++|+++           |.+.+..+ ..
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~~~~~~~  110 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GADLDHRDMRG  110 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCSSS
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-----------CCCCCcCCCCC
Confidence            4578999999999999999999998312222    889999 9999999999999999           66666666 77


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQ  120 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~~  120 (256)
                      |.||||+|+..|+.+++++|+++|++++..+..+.++...+.
T Consensus       111 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            999999999999999999999999999998888888877443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.72  E-value=7.6e-18  Score=143.39  Aligned_cols=104  Identities=25%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+++    |.|||| |+..|+.+++++|+++           |.+.+..+
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~~~d   92 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLLENEFPLHQAATLEDTKIVKILLFS-----------GLDDSQFD   92 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT-----------TCCTTCCC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCcC
Confidence            56789999999999999999999999999 6655    789999 9999999999999999           66777888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC-Ccccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPT-CQCVQ  117 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~-~~~~~  117 (256)
                      ..|.||||+|+..|+.+++++|+++|++++.....+ .++..
T Consensus        93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~  134 (285)
T 3kea_A           93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY  134 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Confidence            899999999999999999999999999999777766 55544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=2.2e-17  Score=140.38  Aligned_cols=94  Identities=23%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             cCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           4 LLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         4 ~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      .|..|+||||+|+..   |+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |++.+
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-----------gad~~  232 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KASIE  232 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCC
Confidence            478899999999999   899999999998 6665      889999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      .++..|.||||+|+..|+.+++++|+++|++....+
T Consensus       233 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  268 (278)
T 1dcq_A          233 IANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH  268 (278)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCSS
T ss_pred             CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            889999999999999999999999999999654433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.72  E-value=2.5e-17  Score=128.32  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|.||||.|+..|+.++++.|++..+.+.      |.|||| |+..|+.+++++|+++           |.+.+..
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~   71 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-----------GADVHAK   71 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCC
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-----------CCCCCcc
Confidence            357889999999999999999999999644333      679999 9999999999999999           6677788


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..|.||||.|+..|+.+++++|+++|++++.++..+.++..
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  113 (165)
T 3twr_A           72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH  113 (165)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            889999999999999999999999999999988877776654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.72  E-value=1e-17  Score=139.63  Aligned_cols=101  Identities=21%  Similarity=0.157  Sum_probs=89.4

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------------------chhHHH-HHHcCCHHHHHHHHh---CCcCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------------------RDGALH-AIQCDEINILKLILD---WQKCH   61 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------------------g~t~L~-A~~~g~~~~v~~Ll~---~~~~~   61 (256)
                      |.+|+||||+|+.+|+.+++++|+++ |+++                   |.|||| |+..|+.+++++|++   +    
T Consensus        87 d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~----  161 (256)
T 2etb_A           87 FYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ----  161 (256)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC----
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc----
Confidence            46799999999999999999999999 5543                   779999 999999999999999   7    


Q ss_pred             CCCccccCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHCCCCC-------CCCCCCCCcccc
Q psy4451          62 KPESEFKGHCNSNDFPKCITPLMLAAQ--LGRLE-------IVALLLERGHCI-------PYPHLPTCQCVQ  117 (256)
Q Consensus        62 ~~~~~~~~~~~~~~~~~g~TpL~lAa~--~g~~e-------iv~~Ll~~ga~i-------~~~~~~~~~~~~  117 (256)
                             |.+.+.++..|.||||+|+.  .++.+       ++++|+++|+++       +..+..+.++..
T Consensus       162 -------ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          162 -------PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             -------CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             -------CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence                   77788899999999999999  88888       999999999999       666666666655

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=3.7e-17  Score=131.01  Aligned_cols=104  Identities=22%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||+|+.+|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++          .+.+.+..
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----------~~~~~~~~  102 (201)
T 3hra_A           34 EVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKH----------ATPDLNKH  102 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----------SCCCTTCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc----------cCcccccc
Confidence            3455666666666666666666666665 4433      456666 6666666666666633          13344555


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCCCcccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERG-HCIPYPHLPTCQCVQ  117 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~g-a~i~~~~~~~~~~~~  117 (256)
                      +..|.||||.|+..|+.+++++|+++| ++++.++..+.++..
T Consensus       103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A          103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            555666666666666666666666665 555555554444433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=2.7e-17  Score=131.89  Aligned_cols=106  Identities=21%  Similarity=0.129  Sum_probs=93.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccC-CCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKG-HCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~~   73 (256)
                      ...|..|+||||.|+..|+.+++++|+++.+.++      |.|||| |+..|+.+++++|+++           + .+.+
T Consensus        66 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~  134 (201)
T 3hra_A           66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-----------GREDID  134 (201)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH-----------CCCCTT
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc-----------CCCCcC
Confidence            4578899999999999999999999996534443      789999 9999999999999998           4 6778


Q ss_pred             CCCCCCCcHHHHHHHcCc-----HHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          74 NDFPKCITPLMLAAQLGR-----LEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~-----~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      .++..|.||||.|+..++     .+++++|+++|++++..+..+.++...
T Consensus       135 ~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  184 (201)
T 3hra_A          135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY  184 (201)
T ss_dssp             CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            889999999999999998     999999999999999988888877663

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.71  E-value=4e-17  Score=133.89  Aligned_cols=103  Identities=21%  Similarity=0.206  Sum_probs=89.8

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------------------chhHHH-HHHcCCHHHHHHHHhCCcCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------------------RDGALH-AIQCDEINILKLILDWQKCHK   62 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------------------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~   62 (256)
                      ..|.+|+||||+|+.+|+.+++++|+++ |+++                   |.|||| |+..|+.+++++|+++     
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----  143 (232)
T 2rfa_A           70 SELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-----  143 (232)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-----
T ss_pred             ccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-----
Confidence            4577999999999999999999999998 5442                   779999 9999999999999999     


Q ss_pred             CCccccCCCCCCCCCCCCcHHHHHHHcCcHHHH----HHHHHCCCCCC------CCCCCCCcccc
Q psy4451          63 PESEFKGHCNSNDFPKCITPLMLAAQLGRLEIV----ALLLERGHCIP------YPHLPTCQCVQ  117 (256)
Q Consensus        63 ~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv----~~Ll~~ga~i~------~~~~~~~~~~~  117 (256)
                            |.+.+.++..|.||||+|+..|+.+++    ++|++.|++.+      ..+..+.++..
T Consensus       144 ------ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  202 (232)
T 2rfa_A          144 ------GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK  202 (232)
T ss_dssp             ------TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred             ------CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence                  777888899999999999999999988    99999999884      45555555554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.71  E-value=8e-17  Score=139.23  Aligned_cols=104  Identities=26%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-----------g~~~~~  119 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-----------GACVNA  119 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-----------CCCCCC
Confidence            35678899999999999999999999998 6654      779998 9999999999999998           666777


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..|.||||.|+..|+.+++++|+++|++++.....+.++..
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~  162 (351)
T 3utm_A          120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVD  162 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchH
Confidence            8888999999999999999999999999998877766655543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.71  E-value=1.3e-17  Score=139.04  Aligned_cols=114  Identities=19%  Similarity=0.134  Sum_probs=91.0

Q ss_pred             ccCCCCChHHHHHHHh---CCHHHHHHHhcCCCCC-----------------CchhHHH-HHHcCCHHHHHHHHhCCcCC
Q psy4451           3 YLLFQGVSALQTAIIK---NDVMMVKYLLSLPSIK-----------------VRDGALH-AIQCDEINILKLILDWQKCH   61 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~-----------------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~   61 (256)
                      ..|.+|+||||+|+.+   |+.+++++|+++ +++                 .|.|||| |+..|+.+++++|+++|++.
T Consensus        38 ~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  116 (256)
T 2etb_A           38 TEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV  116 (256)
T ss_dssp             SBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3689999999999999   999999999987 321                 2789999 99999999999999996554


Q ss_pred             CCCccc--cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCcccc
Q psy4451          62 KPESEF--KGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE---RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        62 ~~~~~~--~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~---~ga~i~~~~~~~~~~~~  117 (256)
                      +.....  ...+.+..+..|.||||.|+..|+.+++++|++   .|++++..+..+.++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh  177 (256)
T 2etb_A          117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH  177 (256)
T ss_dssp             TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHH
T ss_pred             CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHH
Confidence            322110  001112223349999999999999999999999   99999998888888776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.71  E-value=7.7e-17  Score=131.94  Aligned_cols=102  Identities=25%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++|           .+.+..
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----------~~~~~~  102 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG-----------AHVNAV  102 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----------CCTTCC
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcC-----------CCCCCC
Confidence            4688999999999999999999999998 5554      789999 99999999999999994           445555


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++.
T Consensus       103 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  143 (231)
T 3aji_A          103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM  143 (231)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            56666666666666666666666666666665555554443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.70  E-value=7.5e-17  Score=126.37  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        74 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~  141 (169)
T 2y1l_E           74 NAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-----------GADVNA  141 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCC
Confidence            35688999999999999999999999998 6654      789999 9999999999999999           667778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERG  102 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~g  102 (256)
                      ++..|.||+++|+..|+.+++++|++.|
T Consensus       142 ~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          142 QDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            8899999999999999999999999886

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.70  E-value=5.5e-17  Score=126.57  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=89.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKC   79 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g   79 (256)
                      .|.||||.|+..|+.++++.|++. +.++      |.|||| |+..|+.+++++|+++           |.+.+..+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~~~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-----------GADPQLLGKGR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-----------CCCCCCcCCCC
Confidence            589999999999999999999998 4443      789999 9999999999999999           66677788899


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          80 ITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        80 ~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .||||.|+..|+.+++++|++.|++++.++..+.++..
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  107 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL  107 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHH
Confidence            99999999999999999999999999988877777655

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.70  E-value=7.8e-17  Score=139.78  Aligned_cols=115  Identities=19%  Similarity=0.149  Sum_probs=87.7

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCC---HHHHHHHHhCC-cCCCC-------Cc
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDE---INILKLILDWQ-KCHKP-------ES   65 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~---~~~v~~Ll~~~-~~~~~-------~~   65 (256)
                      .|.+|+||||+|+..|+.++|++|+++ |+++      |.|||| |+..|+   .++++.|++++ ++.+.       ..
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  205 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  205 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHH
Confidence            789999999999999999999999999 6665      667777 777666   34444444433 11100       00


Q ss_pred             ccc---------------------------------------C-------------------------CCCCCCCCCCCc
Q psy4451          66 EFK---------------------------------------G-------------------------HCNSNDFPKCIT   81 (256)
Q Consensus        66 ~~~---------------------------------------~-------------------------~~~~~~~~~g~T   81 (256)
                      ++.                                       +                         .+.+.++..|.|
T Consensus       206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~T  285 (327)
T 1sw6_A          206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  285 (327)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCC
Confidence            000                                       0                         047788999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      |||+|+..|+.+++++|+++|++++..+..+.++..++
T Consensus       286 pLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          286 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            99999999999999999999999999999898888743

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=5.3e-17  Score=118.58  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      +|.+|+||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.++
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-----------ga~~~~~d   87 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-----------GADVXAQD   87 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCC
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCccccc
Confidence            678999999999999999999999998 5654      789999 9999999999999999           77778889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHH
Q psy4451          77 PKCITPLMLAAQLGRLEIVALL   98 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~L   98 (256)
                      ..|.||||+|+..|+.+++++|
T Consensus        88 ~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           88 KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999987

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.70  E-value=5e-17  Score=135.56  Aligned_cols=114  Identities=16%  Similarity=0.061  Sum_probs=88.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCc-CCCCCc---------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQK-CHKPES---------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~-~~~~~~---------   65 (256)
                      ..|.+|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++++ +.+...         
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  130 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL  130 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence            3589999999999999999999999998 6655      789999 999999999999999875 322110         


Q ss_pred             -------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 -------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 -------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                   ...|.+.+..+..|.||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  195 (253)
T ss_dssp             HHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence                         0135666677777777777777777777777777777777766666655544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.70  E-value=1.2e-16  Score=130.41  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCC--CC-------CchhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPS--IK-------VRDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~--~~-------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      ..|.+|+||||+|+..|+.+++++|+++ +  .+       .|.|||| |+..|+.++++.|+++|.         ..+.
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------~~~~  100 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL---------KPDL  100 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSS---------CCCT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC---------Cccc
Confidence            4689999999999999999999999998 4  32       2889999 999999999999999852         1455


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +..+..|.||||.|+..|+.+++++|+++|++++.++..+.++..
T Consensus       101 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  145 (228)
T 2dzn_A          101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH  145 (228)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHH
Confidence            566677777888877777778888777777777777666666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.69  E-value=6.1e-17  Score=145.10  Aligned_cols=114  Identities=22%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ..|..|.||||.|+.+|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++|++.+...          
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  318 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA  318 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHH
Confidence            4567778888888888888888888877 4443      667777 777777777777777754432110          


Q ss_pred             ------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          66 ------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        66 ------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                  ...|.+.+.++..|.||||+|++.|+.+++++|+++|++++..+..+.++.+
T Consensus       319 ~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~  382 (437)
T 1n11_A          319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA  382 (437)
T ss_dssp             HHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             HHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence                        0125555666666666666666666666666666666666666665555554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.69  E-value=7.6e-17  Score=135.50  Aligned_cols=115  Identities=22%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      ...|..|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|++++++.....         
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           39 DLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            35688999999999999999999999999 6665      789999 999999999999999876532110         


Q ss_pred             ---------------------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC-CCcccc
Q psy4451          66 ---------------------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLP-TCQCVQ  117 (256)
Q Consensus        66 ---------------------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~-~~~~~~  117 (256)
                                                 ...+.+.+..+..|.||||.|+..|+.+++++|+++|++++..... +.++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                       0113446677888888888888888888888888888888876643 555543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.69  E-value=6.2e-17  Score=124.67  Aligned_cols=98  Identities=21%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC-----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCc
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV-----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCIT   81 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~-----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~T   81 (256)
                      +.||||.|+..|+.+++++|+++ +.+.     |.|||| |+..|+.+++++|+++           |.+.+..+..|.|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~~~g~t   69 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA-----------GVSRDARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTT-----------TCCTTCCCTTCCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCCCCCCCCC
Confidence            46899999999999999999998 5543     789999 9999999999999998           6677788889999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus        70 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  105 (153)
T 1awc_B           70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH  105 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999988877777655

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.69  E-value=5.6e-17  Score=133.54  Aligned_cols=115  Identities=20%  Similarity=0.109  Sum_probs=81.0

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCC---CCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc------
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPS---IKV------RDGALH-AIQCDEINILKLILDWQKCHKPESE------   66 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~---~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~------   66 (256)
                      .+|.+|+||||.|+..|+.++++.|++...   .++      |.|||| |+..|+.+++++|+++|++.+....      
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            579999999999999999999999998721   122      789999 9999999999999999776542110      


Q ss_pred             ----------------ccCCC------CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC-CCCcccc
Q psy4451          67 ----------------FKGHC------NSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHL-PTCQCVQ  117 (256)
Q Consensus        67 ----------------~~~~~------~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~-~~~~~~~  117 (256)
                                      ..+.+      .+..+..|.||||.|+..|+.+++++|+++|++++.... .+.++..
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  156 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH  156 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence                            01111      345566777777777777777777777777777776655 5555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.69  E-value=1.6e-16  Score=129.38  Aligned_cols=104  Identities=17%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc-----------
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES-----------   65 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~-----------   65 (256)
                      .|..|.||||.|+..++.+++++|+++ ++++      |.|||| |+..|+.+++++|+++|++.+...           
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  166 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH
Confidence            345555666666666666666655555 3332      455555 555555555555555555432110           


Q ss_pred             -----------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          66 -----------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        66 -----------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                                 ...|.+.+.++..|.||+++|+..|+.+++++|+++|+....+
T Consensus       167 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred             HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence                       0136778888999999999999999999999999999976654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.69  E-value=2e-17  Score=138.14  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=87.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------------------chhHHH-HHHcCCHHHHHHHHh---CCcC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------------------RDGALH-AIQCDEINILKLILD---WQKC   60 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------------------g~t~L~-A~~~g~~~~v~~Ll~---~~~~   60 (256)
                      |.+|+||||+|+.+|+.+++++|+++ |+++                    |.|||| |+..|+.+++++|++   +   
T Consensus        90 d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~---  165 (260)
T 3jxi_A           90 YYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK---  165 (260)
T ss_dssp             SEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC---
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc---
Confidence            45899999999999999999999998 4432                    679999 999999999999999   6   


Q ss_pred             CCCCccccCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCC-------CCCCCCCCcccc
Q psy4451          61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGR---------LEIVALLLERGHCI-------PYPHLPTCQCVQ  117 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~---------~eiv~~Ll~~ga~i-------~~~~~~~~~~~~  117 (256)
                              |.+.+.++..|.||||+|+..++         .+++++|+++|+++       +..+..+.++..
T Consensus       166 --------ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          166 --------QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             --------CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             --------CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence                    77788889999999999998887         79999999999998       445556666554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.1e-17  Score=138.24  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=88.1

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        48 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-----------ga~~~~  115 (229)
T 2vge_A           48 SQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQH-----------GAAIFA  115 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-----------TCCTTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCccc
Confidence            45789999999999999999999999999 6665      789999 9999999999999999           666666


Q ss_pred             CC-CCCCcHHHHH--HHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy4451          75 DF-PKCITPLMLA--AQLGRLEIVALLLERGHCIPYPHLPT  112 (256)
Q Consensus        75 ~~-~~g~TpL~lA--a~~g~~eiv~~Ll~~ga~i~~~~~~~  112 (256)
                      .+ ..|.||||+|  +..|+.+++++|++.|++++..+..+
T Consensus       116 ~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~  156 (229)
T 2vge_A          116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA  156 (229)
T ss_dssp             CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGE
T ss_pred             ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCc
Confidence            65 5899999999  99999999999999999998765443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.69  E-value=1.3e-16  Score=125.98  Aligned_cols=101  Identities=19%  Similarity=0.102  Sum_probs=87.8

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      .++.+|||.|+..|+.++++.|+++.+.++      |.|||| |+..|+.+++++|+++           |.+.+..+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~~~   71 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-----------GARINVMNRG   71 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-----------CCCCCCcCCC
Confidence            568899999999999999999999844433      789999 9999999999999999           6677788889


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |.||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  110 (179)
T 3f6q_A           72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH  110 (179)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            999999999999999999999999999988887777754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.69  E-value=4e-17  Score=143.00  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=94.3

Q ss_pred             cCCCCChHHHHHHHhC--CHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKN--DVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~--~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      .|.+|.||||+|+..|  +.+++++|+++ |+++      |.|||| |+..|+.+++++|+++|++..      +.+.+.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~  206 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS------SLRLDY  206 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSS------SCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccc------cccccc
Confidence            6788999999999999  99999999998 6665      789999 999999999999999955422      334778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            8899999999999999999999999999999988887777765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.69  E-value=4.4e-17  Score=137.17  Aligned_cols=102  Identities=18%  Similarity=0.152  Sum_probs=87.6

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------------------chhHHH-HHHcCCHHHHHHHHh---CCc
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------------------RDGALH-AIQCDEINILKLILD---WQK   59 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------------------g~t~L~-A~~~g~~~~v~~Ll~---~~~   59 (256)
                      .|.+|+||||+|+..|+.+++++|+++ |+++                    |.|||| |+..|+.+++++|++   +  
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--  173 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ--  173 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC--
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC--
Confidence            456899999999999999999999998 5542                    679999 999999999999999   7  


Q ss_pred             CCCCCccccCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCCCC-------CCCCCCcccc
Q psy4451          60 CHKPESEFKGHCNSNDFPKCITPLMLAAQLGR---------LEIVALLLERGHCIPY-------PHLPTCQCVQ  117 (256)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~---------~eiv~~Ll~~ga~i~~-------~~~~~~~~~~  117 (256)
                               |.+.+.++..|.||||+|+..|+         .+++++|+++|++++.       .+..+.++..
T Consensus       174 ---------gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          174 ---------PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             ---------CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             ---------CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHH
Confidence                     77778888999999999999888         7999999999998863       4555555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.69  E-value=7.4e-18  Score=135.00  Aligned_cols=102  Identities=9%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             CCCChHHHHHHHhCCH----HHHHHHhcCCCCCC------chhHHH-HHHcCC------HHHHHHHHhCCcCCCCCcccc
Q psy4451           6 FQGVSALQTAIIKNDV----MMVKYLLSLPSIKV------RDGALH-AIQCDE------INILKLILDWQKCHKPESEFK   68 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~----~~v~~Ll~~~~~~~------g~t~L~-A~~~g~------~~~v~~Ll~~~~~~~~~~~~~   68 (256)
                      .+|+||||+|+.+++.    +++++|+++ |+++      |.|||| |+..|+      .+++++|+++           
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-----------  103 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-----------  103 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-----------
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-----------
Confidence            6799999999999985    599999999 7776      889999 999887      6889999999           


Q ss_pred             CCCCCCCCCCCC-cHHHHHHHcC-----cHHHHHHHHH-CCCCCCCCCCCCCcccccc
Q psy4451          69 GHCNSNDFPKCI-TPLMLAAQLG-----RLEIVALLLE-RGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        69 ~~~~~~~~~~g~-TpL~lAa~~g-----~~eiv~~Ll~-~ga~i~~~~~~~~~~~~~~  119 (256)
                      |++.+.++..|. ||||.|+..+     +.+++++|++ .|++++..+..+.++.+.+
T Consensus       104 Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A          104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            777888899999 9999999844     4679999999 9999999999888887744

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.68  E-value=3.5e-17  Score=136.58  Aligned_cols=113  Identities=20%  Similarity=0.163  Sum_probs=92.4

Q ss_pred             cCCCCChHHHHHH---HhCCHHHHHHHhcCCCCC-----------------CchhHHH-HHHcCCHHHHHHHHhCCcCCC
Q psy4451           4 LLFQGVSALQTAI---IKNDVMMVKYLLSLPSIK-----------------VRDGALH-AIQCDEINILKLILDWQKCHK   62 (256)
Q Consensus         4 ~d~~G~taLh~A~---~~~~~~~v~~Ll~~~~~~-----------------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~   62 (256)
                      .|.+|+||||+|+   ..|+.+++++|++. +++                 .|.|||| |+..|+.+++++|+++|++.+
T Consensus        42 ~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  120 (260)
T 3jxi_A           42 EPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH  120 (260)
T ss_dssp             CTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC
Confidence            3578999999999   77999999999997 321                 3789999 999999999999999977655


Q ss_pred             CCcc---ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCcccc
Q psy4451          63 PESE---FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE---RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        63 ~~~~---~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~---~ga~i~~~~~~~~~~~~  117 (256)
                      ....   ....+.+..+..|.||||+|+..|+.+++++|++   .|++++..+..+.++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh  181 (260)
T 3jxi_A          121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH  181 (260)
T ss_dssp             CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHH
T ss_pred             ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHH
Confidence            3321   1122333444789999999999999999999999   99999998888888776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.68  E-value=3.5e-16  Score=128.53  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||.|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++|++           .+.
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~   72 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-----------VDP   72 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----------CCC
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----------CCC
Confidence            35788999999999999999999999998 5554      779999 9999999999999998554           334


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERG-HCIPYPHLPT  112 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~g-a~i~~~~~~~  112 (256)
                      .+..|.||||.|+..|+.+++++|++.| ++++.+...+
T Consensus        73 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  111 (237)
T 3b7b_A           73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG  111 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence            4444445555555555555555555444 3444433333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.68  E-value=1.1e-16  Score=143.45  Aligned_cols=102  Identities=23%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|+||||.|+..|+.++|++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+.+
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-----------g~~~~~~   76 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-----------KAKVNAK   76 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-----------TCCSSCC
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-----------CCCCCCC
Confidence            4678899999999999999999999998 6654      679999 9999999999999998           5556666


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      +..|.||||.|+..|+.+++++|+++|++++.....+.++.
T Consensus        77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  117 (437)
T 1n11_A           77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL  117 (437)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            67777777777777777777777777777776665555543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.68  E-value=6.9e-17  Score=135.99  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=92.8

Q ss_pred             ccCCCCChHHHHHHHh---CCHHHHHHHhcCCCCC-----------------CchhHHH-HHHcCCHHHHHHHHhCCcCC
Q psy4451           3 YLLFQGVSALQTAIIK---NDVMMVKYLLSLPSIK-----------------VRDGALH-AIQCDEINILKLILDWQKCH   61 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~-----------------~g~t~L~-A~~~g~~~~v~~Ll~~~~~~   61 (256)
                      ..|.+|+||||+|+..   |+.+++++|+++ +++                 .|.|||| |+..|+.+++++|+++|++.
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            3588999999999987   999999999997 321                 3889999 99999999999999997765


Q ss_pred             CCCcc---ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH---CCCCCCCCCCCCCcccc
Q psy4451          62 KPESE---FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE---RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        62 ~~~~~---~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~---~ga~i~~~~~~~~~~~~  117 (256)
                      +....   ....+.+..+..|.||||.|+..|+.+++++|++   .|++++..+..+.++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh  189 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH  189 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHH
Confidence            43221   1112233444589999999999999999999999   99999988888887766

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.68  E-value=1.1e-16  Score=136.02  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFP   77 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      +..|.||||.||..|+.++++.|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+..+.
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~~~~~  104 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVEN-----------GANINQPDN  104 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCT
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCCCC
Confidence            45678999999999999999999998 5654      789999 9999999999999999           667778888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .|.||||.|+..|+.+++++|+++|++++..+..+.++..
T Consensus       105 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  144 (299)
T 1s70_B          105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (299)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999988777777655

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=132.98  Aligned_cols=96  Identities=23%  Similarity=0.265  Sum_probs=80.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +..|..|+||||.|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~~  120 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKH-----------GAQVNG  120 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCSSC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-----------CCCCCC
Confidence            34678899999999999999999999998 6655      789999 9999999999999998           556666


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      .+..|.||||.|+..|+.+++++|++.|++++...
T Consensus       121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  155 (285)
T 3d9h_A          121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES  155 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC
T ss_pred             CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC
Confidence            77778888888888888888888888888776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.67  E-value=4.6e-16  Score=132.24  Aligned_cols=115  Identities=14%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCcc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-----RDGALH-AIQCDEINILKLILDWQKCHKPESE---------   66 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~---------   66 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ ++++     |.|||| |+..|+.+++++|+++|++.+....         
T Consensus       119 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          119 NGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            35678888899999988888888888887 5543     678888 8888888888888888655432100         


Q ss_pred             -------------ccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          67 -------------FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        67 -------------~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                                   ..|.+.+ .+..|.||||+|+..|+.+++++|+++|++++..+..+.++.++
T Consensus       198 ~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~  261 (285)
T 3d9h_A          198 CENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL  261 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence                         1244444 25566777777777777777777777777777666666666653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.66  E-value=6.3e-16  Score=133.95  Aligned_cols=43  Identities=23%  Similarity=0.182  Sum_probs=35.7

Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCccc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQCV  116 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~  116 (256)
                      ..+..|.||||.|+..|+.+++++|++ .|++++..+..+.++.
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l  206 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  206 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence            446679999999999999999999995 6999998877666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.66  E-value=4.1e-16  Score=130.72  Aligned_cols=103  Identities=29%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCC----HHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDE----INILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      .|..|.||||.|+.+|+.+++++|+++.++++      |.|||| |+..++    .+++++|+++           |.+.
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-----------g~~~  212 (285)
T 1wdy_A          144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-----------GADV  212 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-----------TCCS
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-----------CCCC
Confidence            46778888888888888888888887634433      678887 888887    7888888887           4445


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCCcccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLE-RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~~  117 (256)
                      +.++..|.||||.|+..|+.+++++|++ .|++++..+..+.++..
T Consensus       213 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~  258 (285)
T 1wdy_A          213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL  258 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH
Confidence            5555666666666666666666666666 56666665555555543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=133.30  Aligned_cols=88  Identities=30%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHh-CCcCCCCCccccCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILD-WQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~   74 (256)
                      ..|..|+||||+|+.+|+.+++++|+++ |+++      |.|||| |+..|+.+++++|++ +           |++.+.
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~-----------gad~~~  245 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP-----------SCDISL  245 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTST-----------TCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-----------CCCCcC
Confidence            3577899999999999999999999999 6665      889999 999999999999999 6           778888


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERG  102 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~g  102 (256)
                      ++..|.||||+|+..|+.+++++|++++
T Consensus       246 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          246 TDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.66  E-value=8.6e-16  Score=125.72  Aligned_cols=101  Identities=25%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      |.+|.||||.|+..|+.+++++|+++ +.++       |.|||| |+..|+.++++.|+++           |.+.+..+
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~  106 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-----------GADPSLID  106 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCC
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-----------CCCCcccC
Confidence            44444455555554444554444444 2211       334444 4444555555555444           55556666


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..|.||||.|+..|+.+++++|+++|++++.....+.++..
T Consensus       107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  147 (240)
T 3eu9_A          107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM  147 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHH
Confidence            77777777777777777777777777777766665555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.66  E-value=6.9e-16  Score=126.77  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhc----CCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLS----LPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGH   70 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~----~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   70 (256)
                      ..+|.+|+||||.|+.+|+.++++.|++    . +.++      |.|||| |+..|+.+++++|+++|++          
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   71 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS----------   71 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            4579999999999999999999999987    3 4433      789999 9999999999999998544          


Q ss_pred             CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC
Q psy4451          71 CNSNDFPKCITPLMLAAQLGRLEIVALLLERGH  103 (256)
Q Consensus        71 ~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga  103 (256)
                       .+..+..|.||||.|+..|+.+++++|++.|+
T Consensus        72 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           72 -PMALDRHGQTAAHLACEHRSPTCLRALLDSAA  103 (241)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             -ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             44444555555555555555555555555554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.66  E-value=5.3e-16  Score=119.48  Aligned_cols=100  Identities=21%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHHHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCI   80 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~   80 (256)
                      +|.||||.|+..|+.++++.|+++.+.++      |.||||.+..|+.++++.|+++           |.+.+.++..|.
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~~~~~~~v~~Ll~~-----------g~~~~~~~~~g~   69 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ-----------GASPNVQDTSGT   69 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHT-----------TCCTTCCCTTSC
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHHHHcCCHHHHHHHHHC-----------CCCCCCcCCCCC
Confidence            36799999999999999999998742232      8899987889999999999999           667778889999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          81 TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        81 TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ||||.|+..|+.+++++|+++|++++.++..+.++..
T Consensus        70 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (156)
T 1bd8_A           70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH  106 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            9999999999999999999999999988877777655

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.65  E-value=4.5e-16  Score=134.90  Aligned_cols=89  Identities=22%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||.|+..|+.++++.|++..++++      |.|||| |+..|+.+++++|+++|++           .+  
T Consensus       234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-----------~n--  300 (337)
T 4g8k_A          234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-----------TD--  300 (337)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-----------ST--
T ss_pred             CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------CC--
Confidence            456667777777777777777777776544443      667777 7777777777777777433           22  


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCC
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPY  107 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~  107 (256)
                         ..||||.|+..|+.+++++|+++||+++.
T Consensus       301 ---~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          301 ---CGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             ---TCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             ---CCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence               23577777777777777777777777663

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.65  E-value=9.2e-17  Score=131.26  Aligned_cols=98  Identities=19%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||+|+.+|+.+++++|+++.++++      |+|||| |+..|+.+++++|+++           |++.+.
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-----------ga~~~~  168 (222)
T 3ehr_A          100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-----------GARTDL  168 (222)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-----------TCCSCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCcc
Confidence            4578999999999999999999999999745544      889999 9999999999999999           777788


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHL  110 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~  110 (256)
                      ++..|.|||++|+..|+.++++.|++.|++......
T Consensus       169 ~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             ccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            899999999999999999999999999998775543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.65  E-value=4.2e-17  Score=137.94  Aligned_cols=93  Identities=18%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |++.+.
T Consensus       146 n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-----------Gad~~~  213 (269)
T 4b93_B          146 NKKDLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLH-----------GASVQV  213 (269)
T ss_dssp             CCCCTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-----------TCCSCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-----------CCCCCC
Confidence            45788999999999999999999999998 6665      789999 9999999999999998           777888


Q ss_pred             CCCCCCcHHHHHHHcCc-HHHHHHHHHCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGR-LEIVALLLERGHCIP  106 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~-~eiv~~Ll~~ga~i~  106 (256)
                      +|..|.||||+|+++++ .|+++.|.+.+++++
T Consensus       214 ~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          214 LNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             CCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             cCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            99999999999998876 355555555555543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.65  E-value=6.9e-16  Score=133.32  Aligned_cols=102  Identities=22%  Similarity=0.147  Sum_probs=92.5

Q ss_pred             cCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           4 LLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         4 ~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      .+..|.||||.|+..   ++.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~n  274 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-----------GAKMN  274 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCC
Confidence            467899999999999   558999999998 6655      789999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       275 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            88999999999999999999999999999999998888887765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.64  E-value=2.2e-16  Score=130.75  Aligned_cols=101  Identities=18%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPK   78 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~   78 (256)
                      +..|+||||.|+..++.+.++.|+++ |+++     +.|||| |+..|+.++++.|+++           |.+.+..+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-----------g~~~~~~d~~   69 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYE-----------VDDPSLPNDE   69 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTST-----------TSSCCCCCTT
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCcccCchhhHHHHHHHHcCCHHHHHHHHHc-----------CCCCCCcCCC
Confidence            45799999999999999999999999 6655     689999 9999999999999998           6677888999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          79 CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        79 g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      |.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~  108 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH  108 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            999999999999999999999999999988888877754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.64  E-value=3e-16  Score=137.37  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCC-----C------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIK-----V------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKG   69 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~-----~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~   69 (256)
                      ...|..|+||||+|+.+|+.+++++|+++ +++     +      |+|||| |+..|+.+++++|+++           |
T Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------g  234 (364)
T 3ljn_A          167 TAKDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-----------G  234 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-----------T
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-----------C
Confidence            46788999999999999999999999987 444     3      889999 9999999999999999           7


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          70 HCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        70 ~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      ++.+..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       235 ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          235 IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            7778889999999999999999999999999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.64  E-value=1.4e-15  Score=127.48  Aligned_cols=92  Identities=22%  Similarity=0.214  Sum_probs=59.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFP   77 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      |..|+||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |.+.+..+.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~~~~~~  103 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-----------GADVNECDF  103 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCBCT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCccCc
Confidence            45566666666666666666666665 4433      456666 6666666666666666           445555666


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                      .|.||||.|+..|+.+++++|+++|++++..
T Consensus       104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            6777777777777777777777777766644

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.63  E-value=3.6e-16  Score=132.99  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------c-hhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------R-DGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g-~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|..|+||||+|+..|+.+++++|+++ |+++      | .|||| |+..|+.+++++|+++|++....         
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---------  158 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL---------  158 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC---------
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc---------
Confidence            45688899999999999999999999988 6655      5 68998 99999999999999886543210         


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                         ..|.||||.|+..|+.+++++|+++|++++..+..+.+
T Consensus       159 ---~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  196 (285)
T 3kea_A          159 ---AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI  196 (285)
T ss_dssp             ---STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred             ---cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence               13445555555555555555555555555544444333

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.63  E-value=9.2e-17  Score=121.41  Aligned_cols=91  Identities=20%  Similarity=0.225  Sum_probs=77.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|..|+||||+|+..|+.+++++|+++ ++++      |.|||| |+..|+.+++++|+++           |.+.+.
T Consensus        37 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------ga~~~~  104 (137)
T 3c5r_A           37 NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-----------GASRNA  104 (137)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCC
Confidence            45788999999999999999999999998 6654      779999 9999999999999999           777788


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      ++..|.||+++|+..+..+++++|.+.+.+
T Consensus       105 ~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          105 VNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            899999999999999999999888776654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.63  E-value=4.4e-16  Score=137.34  Aligned_cols=116  Identities=25%  Similarity=0.257  Sum_probs=83.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCC----CCC----CchhHHH-HHHcC---CHHHHHHHHhCCcCCCCC-----
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLP----SIK----VRDGALH-AIQCD---EINILKLILDWQKCHKPE-----   64 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~----~~~----~g~t~L~-A~~~g---~~~~v~~Ll~~~~~~~~~-----   64 (256)
                      ...|..|+||||+|+.+|+.+++++|++++    ..+    .|.|||| |+..+   +.+++++|+++|++.+..     
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~  272 (373)
T 2fo1_E          193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK  272 (373)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc
Confidence            345677777777777777777777777762    111    1667777 77766   677777777777654320     


Q ss_pred             ----------c----------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          65 ----------S----------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        65 ----------~----------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                                .                ...+.+.+..+..|.||||+|+..|+.+++++|+++|++++..+..+.++.+
T Consensus       273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~  351 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  351 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence                      0                0124777888888999999999999999999999999998888777777665

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.63  E-value=2.3e-16  Score=135.61  Aligned_cols=89  Identities=19%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             cCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           4 LLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         4 ~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      .|.+|+||||+|+..   ++.+++++|+++ |+++      |+|||| |+..|+.+++++|+++           |++.+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-----------gad~~  253 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-----------RALVG  253 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCCS
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCC
Confidence            578999999999997   899999999998 6654      889999 9999999999999999           77778


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .+|..|.||||+|+..|+.+++++|+++|++
T Consensus       254 ~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          254 TVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            8899999999999999999999999999886

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.62  E-value=3.9e-16  Score=115.82  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ ++++      |+|||| |+..|+.+++++|+++           |.+.+.
T Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-----------ga~~~~  101 (123)
T 3aaa_C           34 NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-----------GADKTV  101 (123)
T ss_dssp             TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCC
Confidence            45788999999999999999999999998 6654      789999 9999999999999999           677788


Q ss_pred             CCCCCCcHHHHHHHcCcHHH
Q psy4451          75 DFPKCITPLMLAAQLGRLEI   94 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~ei   94 (256)
                      ++..|.||+|+|+..+..++
T Consensus       102 ~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C          102 KGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CCTTSCCHHHHCCCHHHHHH
T ss_pred             cCCCCCCHHHHhCCHHHHHH
Confidence            89999999999954444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.62  E-value=9.6e-16  Score=135.19  Aligned_cols=91  Identities=19%  Similarity=0.140  Sum_probs=81.1

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .|..|+||||+|+.+|+.+++++|++++++++      |.|||| |+..|+.+++++|+++           |++.+..+
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-----------gad~~~~d  343 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------GASVEAVD  343 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----------TCCSSCCC
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCccCCC
Confidence            57789999999999999999999998744554      789999 9999999999999999           77788889


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCI  105 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i  105 (256)
                      ..|.|||++|+..|+.+++++|+++|++-
T Consensus       344 ~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          344 ATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999999999999999999998863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.61  E-value=1.6e-15  Score=120.40  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||+|+..|+.+++++|+++ |+++       |+|||| |+..|+.+++++|+++           |.+.+
T Consensus        70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----------ga~~~  137 (183)
T 3deo_A           70 DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-----------GADIE  137 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-----------TCCTT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-----------CCCCc
Confidence            46789999999999999999999999998 5544       779999 9999999999999999           66677


Q ss_pred             CCCCCCCcHHHHHHHc----------------CcHHHHHHHHHC
Q psy4451          74 NDFPKCITPLMLAAQL----------------GRLEIVALLLER  101 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~----------------g~~eiv~~Ll~~  101 (256)
                      .++..|.||||+|++.                |+.+++++|.++
T Consensus       138 ~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          138 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            7788888888888765                556677766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.61  E-value=1.9e-15  Score=125.67  Aligned_cols=92  Identities=17%  Similarity=0.103  Sum_probs=77.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++       |.|||| |+..|+.+++++|+++           |.+.+
T Consensus        71 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----------ga~~~  138 (244)
T 3ui2_A           71 DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-----------GADIE  138 (244)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------CCCCC
Confidence            46789999999999999999999999998 5554       779999 9999999999999999           55555


Q ss_pred             CCCCCCCcHHHHHH----------------HcCcHHHHHHHHHCCCCC
Q psy4451          74 NDFPKCITPLMLAA----------------QLGRLEIVALLLERGHCI  105 (256)
Q Consensus        74 ~~~~~g~TpL~lAa----------------~~g~~eiv~~Ll~~ga~i  105 (256)
                      .++..|.||||+|+                ..|+.+++++|++.+.+.
T Consensus       139 ~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          139 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             CCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence            66666666666665                778999999999876543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.60  E-value=2.6e-15  Score=132.48  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             CCChHHHHHHHh-CCHHHHHHHhcCCCCCC--------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           7 QGVSALQTAIIK-NDVMMVKYLLSLPSIKV--------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         7 ~G~taLh~A~~~-~~~~~v~~Ll~~~~~~~--------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      .+.|+||.|+.. ++.++++.|+++ |+++        |.|||| |+..|+.+++++|+++           |++.+..+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-----------Gadvn~~d  265 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-----------GANVNQAD  265 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-----------CCCCCCCC
Confidence            445667777766 677777777666 3332        456666 6667777777777766           55555666


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      ..|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus       266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~  306 (368)
T 3jue_A          266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT  306 (368)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            66677777777777777777777777766666666555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.60  E-value=1.5e-15  Score=121.50  Aligned_cols=92  Identities=11%  Similarity=0.012  Sum_probs=79.7

Q ss_pred             CcccCCCCChHHHHHHHhCC------HHHHHHHhcCCCCCC------ch-hHHH-HHHcC-----CHHHHHHHHh-CCcC
Q psy4451           1 MFYLLFQGVSALQTAIIKND------VMMVKYLLSLPSIKV------RD-GALH-AIQCD-----EINILKLILD-WQKC   60 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~------~~~v~~Ll~~~~~~~------g~-t~L~-A~~~g-----~~~~v~~Ll~-~~~~   60 (256)
                      +...|.+|+||||+|+..++      .+++++|+++ |+++      |. |||| |+..+     +.+++++|++ +   
T Consensus        68 vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---  143 (186)
T 3t8k_A           68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---  143 (186)
T ss_dssp             SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---
T ss_pred             CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---
Confidence            35678999999999999997      6889999999 7776      77 9999 88844     4579999999 7   


Q ss_pred             CCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          61 HKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                              |++.+.++..|.||||+|++.|+.+++++|.+...+
T Consensus       144 --------gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          144 --------GLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             --------TCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             --------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    788889999999999999999999999999876443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.59  E-value=5.1e-15  Score=121.08  Aligned_cols=105  Identities=19%  Similarity=0.158  Sum_probs=90.0

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      |.-.|.+|.||||.|+..|+.++++.|++. ++++      |.|||| |+..|+.+++++|+++++           +.+
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-----------~~~   69 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-----------IVD   69 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------CTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-----------cch
Confidence            345789999999999999999999999998 5654      779999 999999999999999944           333


Q ss_pred             C-CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          74 N-DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        74 ~-~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      . .+..|.||||.|+..|+.+++++|++.|++++.....+.++..
T Consensus        70 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  114 (240)
T 3eu9_A           70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH  114 (240)
T ss_dssp             CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            2 3345899999999999999999999999999988777766654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.58  E-value=3.1e-15  Score=131.99  Aligned_cols=90  Identities=22%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             ccC--CCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           3 YLL--FQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         3 ~~d--~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ..|  .+|.||||+|+..|+.+++++|+++ |+++      |.|||| |+..|+.+++++|+++           |++.+
T Consensus       228 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~-----------Gad~~  295 (368)
T 3jue_A          228 WVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKR-----------GADLG  295 (368)
T ss_dssp             CCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCTT
T ss_pred             ccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHC-----------cCCCC
Confidence            345  8899999999999999999999999 7766      789999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      ..+..|.||||+|+..|+.+++++|++.|..
T Consensus       296 ~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          296 ARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            8999999999999999999999999988753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.55  E-value=1.4e-14  Score=122.94  Aligned_cols=98  Identities=16%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCC------------CchhHHH-HHHc---CCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIK------------VRDGALH-AIQC---DEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~------------~g~t~L~-A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      .++|+.|+..|+.+.++.+++. |.+            .|.|||| |+..   |+.+++++|+++           |++.
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-----------ga~i  198 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-----------SGNL  198 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-----------CSCT
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-----------CCCc
Confidence            3689999999999999999988 444            2789999 9998   899999999999           7778


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..+.++...
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            8889999999999999999999999999999999998888887663

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=123.82  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=87.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHhcCCCCCC------------chhHHH-HHHc---CCHHHHHHHHhCCcCCCCCccccCCC
Q psy4451           8 GVSALQTAIIKNDVMMVKYLLSLPSIKV------------RDGALH-AIQC---DEINILKLILDWQKCHKPESEFKGHC   71 (256)
Q Consensus         8 G~taLh~A~~~~~~~~v~~Ll~~~~~~~------------g~t~L~-A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~   71 (256)
                      +.++|+.|+.+|+.+.++.|++. ++++            |.|||| |+..   |+.+++++|+++           |.+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-----------gad  218 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-----------GGH  218 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-----------SSC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-----------CCC
Confidence            34679999999999999999988 4442            679999 9886   899999999999           777


Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          72 NSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        72 ~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+..+..|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus       219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  264 (301)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            7888999999999999999999999999999999998888888776

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.54  E-value=1.5e-14  Score=132.37  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC------------chhHHH-HHH---cCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV------------RDGALH-AIQ---CDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~------------g~t~L~-A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      .++||.|+.+|+.+.++.|+++ |+++            |.|||| |+.   .|+.+++++|+++           |++.
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-----------ga~v  200 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-----------GGHL  200 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-----------SCCT
T ss_pred             HHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-----------CCCC
Confidence            4689999999999999999998 5542            789999 955   9999999999999           7778


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      +.++..|.||||+||..|+.+++++|+++|++++..+..+.++..
T Consensus       201 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~  245 (497)
T 3lvq_E          201 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  245 (497)
T ss_dssp             TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            888999999999999999999999999999999999888888765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.49  E-value=2.7e-15  Score=132.78  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=58.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCC------CC---chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSI------KV---RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~------~~---g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +.+++||||.|+.+|+.++|++|+++ +.      ++   |+|||| |+..|+.+++++|+++|++...      .+.+.
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~------~~i~~  161 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM------AMIQA  161 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH------HHHSH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc------cccCC
Confidence            44566788888888888888888877 33      22   667787 8888888888888877542100      01111


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      .  + .||||.||..|+.|++++|+++|++++
T Consensus       162 ~--~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~  190 (376)
T 2aja_A          162 E--N-YHAFRLAAENGHLHVLNRLCELAPTEA  190 (376)
T ss_dssp             H--H-HHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             C--C-CCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            1  1 567777777777777777777776644

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.46  E-value=1.1e-13  Score=97.35  Aligned_cols=71  Identities=31%  Similarity=0.359  Sum_probs=64.9

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                      |+|||| |+..|+.+++++|+++           |.+.+.++..|.||||.|+..|+.+++++|+++|++++..+..+.+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-----------g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   70 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-----------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT   70 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-----------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            679999 9999999999999999           7777888999999999999999999999999999999988887777


Q ss_pred             ccc
Q psy4451         115 CVQ  117 (256)
Q Consensus       115 ~~~  117 (256)
                      +..
T Consensus        71 ~l~   73 (93)
T 1n0q_A           71 PLH   73 (93)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.45  E-value=2.4e-14  Score=126.63  Aligned_cols=89  Identities=13%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCC-----C---chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIK-----V---RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~-----~---g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      +|..|.||||+|+.+|+.|+|++|+++ |++     +   +.|||| |+..|+.+++++|+++           |.+.+.
T Consensus       124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~-----------ga~~~~  191 (376)
T 2aja_A          124 IQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL-----------APTEAT  191 (376)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS-----------CGGGHH
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHc-----------CCccch
Confidence            455688999999999999999999999 664     2   468999 9999999999999999           666555


Q ss_pred             --CCCCCCcHHHHHH-HcCcHHHHHHHHHCCCC
Q psy4451          75 --DFPKCITPLMLAA-QLGRLEIVALLLERGHC  104 (256)
Q Consensus        75 --~~~~g~TpL~lAa-~~g~~eiv~~Ll~~ga~  104 (256)
                        .+..|.||||.|| ..|+.|++++|++.|++
T Consensus       192 ~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence              7778999999999 99999999999998864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.31  E-value=4.1e-12  Score=92.29  Aligned_cols=72  Identities=25%  Similarity=0.269  Sum_probs=65.8

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                      |+++|| |+..|+.++++.|+++           |.+.+.++..|.||||.|+..|+.+++++|+++|++++..+..+.+
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~-----------g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMAN-----------GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT   92 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-----------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHc-----------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCc
Confidence            789999 9999999999999999           6677788899999999999999999999999999999988888777


Q ss_pred             cccc
Q psy4451         115 CVQV  118 (256)
Q Consensus       115 ~~~~  118 (256)
                      +...
T Consensus        93 pl~~   96 (110)
T 2zgd_A           93 AFDI   96 (110)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.31  E-value=9.2e-13  Score=114.05  Aligned_cols=78  Identities=22%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             cccCCCCChHHHHHHH----hCCHHHHHHHhcCC----------------------------------------------
Q psy4451           2 FYLLFQGVSALQTAII----KNDVMMVKYLLSLP----------------------------------------------   31 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~----~~~~~~v~~Ll~~~----------------------------------------------   31 (256)
                      ...|.+|+||||+|+.    .|+.+++++|++.+                                              
T Consensus       195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~  274 (327)
T 1sw6_A          195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  274 (327)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence            4578999999999999    89999999998651                                              


Q ss_pred             CCCC----chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcC
Q psy4451          32 SIKV----RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLG   90 (256)
Q Consensus        32 ~~~~----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g   90 (256)
                      +++.    |+|||| |+..|+.+++++|+++           |++.+.++..|.||||+|++.|
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-----------Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVDALLDY-----------GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-----------TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCcccCCCCCCHHHHHHhcC
Confidence            1222    889999 9999999999999999           7778889999999999998765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.22  E-value=1.6e-11  Score=89.42  Aligned_cols=72  Identities=28%  Similarity=0.232  Sum_probs=65.0

Q ss_pred             CchhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy4451          35 VRDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTC  113 (256)
Q Consensus        35 ~g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~  113 (256)
                      .|.|||| |+..|+.++++.|+++           |.+.+..+..|.||||.|+..|+.+++++|++.|++++..+..+.
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~-----------g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~   76 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSK-----------GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN   76 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTT-----------TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-----------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCC
Confidence            3789999 9999999999999998           666778888999999999999999999999999999998877777


Q ss_pred             cccc
Q psy4451         114 QCVQ  117 (256)
Q Consensus       114 ~~~~  117 (256)
                      ++..
T Consensus        77 tpl~   80 (115)
T 2l6b_A           77 TPEH   80 (115)
T ss_dssp             CTTH
T ss_pred             CHHH
Confidence            7665

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=96.68  E-value=0.00054  Score=57.65  Aligned_cols=78  Identities=14%  Similarity=0.335  Sum_probs=58.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy4451         142 KRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYDL  221 (256)
Q Consensus       142 ~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~~  221 (256)
                      .+|+++.||++|++.+..+++...                                ..+.+.-++-.+|++++.+.++.+
T Consensus        87 ~~y~~~~wn~~Dl~~v~~~~i~~~--------------------------------~~~~~lr~~RilR~lrl~~~~~~l  134 (285)
T 3rvy_A           87 ISFFKDPWSLFDFFVVAISLVPTS--------------------------------SGFEILRVLRVLRLFRLVTAVPQM  134 (285)
T ss_dssp             GGGGGCHHHHHHHHHHHHHHSCSS--------------------------------SSCTHHHHHGGGGGGHHHHSSTTH
T ss_pred             HHHHcCChHHhHHHHHHHHHHccc--------------------------------chHHHHHHHHHHHHHHHHHHHHHH
Confidence            668899999999876554432210                                001223445566778888889999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         222 GPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       222 Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      ..+..++.+...++..++++++++++.||+
T Consensus       135 ~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~  164 (285)
T 3rvy_A          135 RKIVSALISVIPGMLSVIALMTLFFYIFAI  164 (285)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988885

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=96.51  E-value=0.0012  Score=53.62  Aligned_cols=81  Identities=19%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy4451         141 SKRFFSVRWNIYEVFKCSLFVLTFMFWVAAYVSVRLYDQQDLERKYWHFLDPTLVAESLFAVATVMSFCNLLFLCQLSYD  220 (256)
Q Consensus       141 ~~~~~~~~wn~~d~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~rll~~~~~~~~  220 (256)
                      .++|+++.||++|++.+...++.....                              ....+.-++-.+|.+++.+.++.
T Consensus        69 ~~~y~~~~wni~D~~~v~~~~i~~~~~------------------------------~~~~~lr~~RilR~lrl~~~~~~  118 (229)
T 4dxw_A           69 KADFFKSGWNIFDTVIVAISLIPIPNN------------------------------SSFLVLRLLRIFRVLRLISVIPE  118 (229)
T ss_dssp             ------CHHHHHHHHHHHHTTCC--------------------------------------CCTTHHHHHHTTHHHHCHH
T ss_pred             hhHHhcCCcHHHHHHHHHHHHhhcCcc------------------------------HHHHHHHHHHHHHHHHHHHHhHH
Confidence            567999999999987665443221000                              00111123556788888889999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4451         221 LGPMQVSVGKMTEDIMKFSVLFGIIMLAFTV  251 (256)
Q Consensus       221 ~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~  251 (256)
                      +..+..++.+..+++..+..+.+++++.||+
T Consensus       119 l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~  149 (229)
T 4dxw_A          119 LKQIIEAILESVRRVFFVSLLLFIILYIYAT  149 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=93.67  E-value=0.091  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=20.2

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHH
Q psy4451         141 SKRFFSVRWNIYEVFKCSLFVLTFM  165 (256)
Q Consensus       141 ~~~~~~~~wn~~d~~~~~l~~~~~~  165 (256)
                      ...|+++.||++|++.++.+.+.+.
T Consensus       266 k~~Y~ks~wniiDli~iip~~i~l~  290 (514)
T 2r9r_B          266 KAGFFTNIMNIIDIVAIIPYYVTIF  290 (514)
T ss_dssp             SSSSTTSHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHhchhHHHHHHHHHHHHHHHH
Confidence            4589999999999998877765544

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=82.35  E-value=0.69  Score=39.58  Aligned_cols=45  Identities=16%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4451         209 CNLLFLCQLSYDLGPMQVSVGKMTEDIMKFSVLFGIIMLAFTVGK  253 (256)
Q Consensus       209 ~rll~~~~~~~~~Gp~~~~l~~m~~di~~F~~i~~v~~~af~~~~  253 (256)
                      +|++++.|..+.+--+.-.+.+....+..++.+++++++.||+.+
T Consensus       103 ~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~  147 (355)
T 3beh_A          103 VWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAA  147 (355)
T ss_dssp             GGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444554444444444444445667777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 11  ALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILDWQKCHKPE 64
            L  A     + +VK LL     P++        LH A +     + K +L     +K +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAK 58

Query: 65  SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQN 121
              K   +        TPL  AA++G   +V LLLE               + +   
Sbjct: 59  VNAKAKDDQ-------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 8   GVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESEF 67
           G++ L     +  V +   L+           + A        L +   +      +   
Sbjct: 264 GLTPLHLVAQEGHVPVADVLIK------HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 317

Query: 68  KGHCNSNDFPKC-ITPLMLAAQLGRLEIVALLLERG 102
           +   + N   K   +PL  AAQ G  +IV LLL+ G
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 28/127 (22%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL---PSIKVRDG--ALH-AIQCDEINILKLILD---- 56
           +  + L  A       + KYLL      + K +D    LH A +    N++KL+L+    
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

Query: 57  ------------------WQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL 98
                                        K    +    K  TPL +AA+ G++ +  LL
Sbjct: 92  PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

Query: 99  LERGHCI 105
           LER    
Sbjct: 152 LERDAHP 158

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 80  ITPLMLAAQLGRLEIVALLLERG 102
           +TPL +A+ +G L IV  LL+RG
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRG 23

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 6/94 (6%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKPESE 66
           +   A + +       +V     L    +    +       ++ ++ +L       P  +
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL-----SIPGIK 305

Query: 67  FKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLE 100
                 +         L LA +LG     ALLL 
Sbjct: 306 ALAPTATIPGDAN-ELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 13/109 (11%)

Query: 6   FQGVSALQTAIIKNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKP-- 63
               +    A+ +    ++ +LL  P + +    +H  +  E  +   I       K   
Sbjct: 195 ENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253

Query: 64  ----ESEFKGHCNSNDFPKC------ITPLMLAAQLGRLEIVALLLERG 102
                S   G  +     +C      +  L+       L+ +  LL   
Sbjct: 254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 7   QGVSALQTAIIKNDVMMVKYLLSL-PSIKVRDG------ALHAI-QCDEINILKLILDWQ 58
           +   A + A     + ++  L  L P+  +         A     +   +++L  + +  
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE-- 182

Query: 59  KCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP 108
                 +      N             A   G   ++  LL+    + Y 
Sbjct: 183 LAPTEATAMIQAENYY------AFRWAAVGRGHHNVINFLLDCPVMLAYA 226

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 8/99 (8%)

Query: 7   QGVSALQTAII---KNDVMMVKYLLSLPSIKVRDGALHAIQCDEINILKLILDWQKCHKP 63
              +AL  A+    +  + +V +L+                     +    L        
Sbjct: 44  PDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGSTALHYCCLTDNAECLK 98

Query: 64  ESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG 102
                            TPL +A +L       LL +  
Sbjct: 99  LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 137

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           T L +AA+LG + IV  LL+ G
Sbjct: 261 TCLNIAARLGNISIVDALLDYG 282

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 81  TPLMLAAQLGRLEIVALLLERGHCI 105
           TPL     +  LE+V  L++ G   
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNR 133

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 9e-04
 Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 34/129 (26%)

Query: 8   GVSALQTAIIKNDVMMVKYLLS----LPSIKVRDGALHAIQCDEINILKLILDWQKC--- 60
           G +AL  A  K  V ++K LL       +     G    I     +    +         
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 61  HKPESEFKG--------HCNSNDFPKCI-------------------TPLMLAAQLGRLE 93
           H  +   +G                  +                   T L+LA +L   +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 94  IVALLLERG 102
           I  LL +RG
Sbjct: 268 IAELLCKRG 276

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 10/89 (11%), Positives = 21/89 (23%)

Query: 79  CITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINI 138
           C    M A + G L+ V   + +G  +        + +    +   L           +I
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 139 YRSKRFFSVRWNIYEVFKCSLFVLTFMFW 167
               +                 V   +  
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSK 90

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 12/88 (13%), Positives = 27/88 (30%)

Query: 81  TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVCQNTDNLNSKPQPPSSIINIYR 140
             L+ AA+ G+ + V +L+  G       L T       Q      ++    + +    R
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 141 SKRFFSVRWNIYEVFKCSLFVLTFMFWV 168
           +K   +           ++  +      
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGA 91

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           T   LA   GR E+V+L+   G
Sbjct: 135 TACDLARLYGRNEVVSLMQANG 156

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 7/22 (31%), Positives = 8/22 (36%)

Query: 81  TPLMLAAQLGRLEIVALLLERG 102
           TPL  A       +  LL   G
Sbjct: 227 TPLGSALLRPNPILARLLRAHG 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.76
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.75
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.75
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.72
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.71
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.71
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.7
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.69
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.69
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.69
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.68
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.66
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.64
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.63
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.62
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.61
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.6
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.6
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.58
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.58
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.57
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.57
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.56
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.5
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.48
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.47
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.46
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.81

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2e-20  Score=137.34  Aligned_cols=99  Identities=24%  Similarity=0.260  Sum_probs=91.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCc
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCIT   81 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~T   81 (256)
                      .|||++|+++|+.++|+.|+++ |+++      |.||+| |+..|+.+++++|+++           |.+.+.++..|.|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-----------g~din~~d~~g~t   70 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-----------GADINAPDKHHIT   70 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-----------SCTTTCCSSSCSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccc-----------cceeeeccccccc
Confidence            4899999999999999999998 6665      889999 9999999999999999           7778888999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      |||.|+..|+.+++++|+++|++++..+..+.++.+.+
T Consensus        71 pLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999999988888887743

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=130.05  Aligned_cols=88  Identities=19%  Similarity=0.246  Sum_probs=81.5

Q ss_pred             hHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcH
Q psy4451          10 SALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITP   82 (256)
Q Consensus        10 taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~Tp   82 (256)
                      ++|+.||.+|+.++|+.|+++ |+++      |+|||| |+..|+.+++++|+++           |.+.+.+|.+|.||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-----------g~~~~~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-----------GVNVNAADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-----------TCCTTCCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccccccccccccccccccccccccccccc-----------ccccccccccCccc
Confidence            689999999999999999998 6665      889999 9999999999999998           67778889999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          83 LMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        83 L~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      ||+|+..|+.+++++|+++|++++...
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAAVFAMT   97 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccccchhhHHHHHHHHHHcCCCccccc
Confidence            999999999999999999999998654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.3e-18  Score=142.64  Aligned_cols=91  Identities=24%  Similarity=0.265  Sum_probs=83.4

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|++|+||||.|+.+++.+++++|+++ +.+.       |.|||| |+..|+.+++++|+++           |++.+
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-----------gadin  219 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-----------GADPT  219 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             ccccccCcccccccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHC-----------CCCCC
Confidence            45789999999999999999999999987 3322       789999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .++..|.||||+|+..|+.+++++|+++||+
T Consensus       220 ~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         220 ARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            8999999999999999999999999999996

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.6e-18  Score=132.95  Aligned_cols=93  Identities=23%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             cCCCCChHHHHHHHh---CCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           4 LLFQGVSALQTAIIK---NDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         4 ~d~~G~taLh~A~~~---~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      .|..|+||||+|+..   ++.+++++|+++ |+++      |+|||| |+..|+.+++++|+++           |++.+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-----------gad~~  108 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KASIE  108 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhcccccccccccccccccccccc-----------Ccccc
Confidence            367899999999985   678999999998 6665      889999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                      .+|..|.||||+|++.|+.+++++|++.++....+
T Consensus       109 ~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1         109 IANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            88999999999999999999999999987755443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.4e-18  Score=137.69  Aligned_cols=105  Identities=23%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||+|+.+|+.|++++|+++ |+++      |.+||| |+..++.++++.|.++           +.+.+..
T Consensus        98 ~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~-----------~~~i~~~  165 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-----------KASTNIQ  165 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------TCCSCCC
T ss_pred             eeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhccc-----------cceeeec
Confidence            4677788888888888888888888877 5554      667887 8888888888888777           6778888


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      +..|.||||.|+..|+.+++++|++.|++++.++..+.++.+++
T Consensus       166 d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             cCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999998888887743

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-18  Score=129.14  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=87.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHHHHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCC
Q psy4451           7 QGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALHAIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCI   80 (256)
Q Consensus         7 ~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~   80 (256)
                      .+.++||.|+.+|+.|+|++|+++ |+++      |.||+|++..|+.+++++|+++           |.+.+.++..+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~-----------ga~~~~~~~~~~   69 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMMGSARVAELLLLH-----------GAEPNCADPATL   69 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTT-----------TCCCCCCCTTTC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCcccccccccccccccccccccccccccccc-----------cccccccccccc
Confidence            467899999999999999999998 6765      7899996668999999999999           556666666654


Q ss_pred             -cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          81 -TPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        81 -TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                       ||||.|++.|+.+++++|+++|++++..+..+.++...
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCCCHHHH
Confidence             79999999999999999999999999998888887653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.8e-17  Score=132.41  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=79.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC---------c-----------------------------------h
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV---------R-----------------------------------D   37 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~---------g-----------------------------------~   37 (256)
                      ..+|.+|+||||+|+..|+.+++++|+++ |+++         |                                   .
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV  106 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhh-hccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45788899999999999999999999987 4432         1                                   1


Q ss_pred             hHHH-HHHcCCHHHHHHHHhCCcCCCCCc-----------------------cccCCCCCCCCCCCCcHHHHHHHcCcHH
Q psy4451          38 GALH-AIQCDEINILKLILDWQKCHKPES-----------------------EFKGHCNSNDFPKCITPLMLAAQLGRLE   93 (256)
Q Consensus        38 t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~TpL~lAa~~g~~e   93 (256)
                      ++++ ++..++.++++.|++.+.+.....                       .....+.+.++..|.||||.|+..|+.+
T Consensus       107 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH
Confidence            3333 333344444444443333221100                       0122456778889999999999999999


Q ss_pred             HHHHHHH-CCCCCCCCCCCCCcccccc
Q psy4451          94 IVALLLE-RGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        94 iv~~Ll~-~ga~i~~~~~~~~~~~~~~  119 (256)
                      ++++|++ .|++++..+..+.++.+.+
T Consensus       187 ~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         187 AAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             HHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            9999996 5999998888888887754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=4.8e-17  Score=135.72  Aligned_cols=117  Identities=22%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCC----------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPE----------   64 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~----------   64 (256)
                      ...|.+|.||||+|+.+|+.|++++|+++ +.+.      +.+|++ |+..++.++++.|+++++.....          
T Consensus        67 n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccccccccccccccchhhcccccCcccccccccCcccccc
Confidence            34577777777777777777777777776 4432      456666 67777777777776665421100          


Q ss_pred             ------------------------------------------------------------------------ccccCCCC
Q psy4451          65 ------------------------------------------------------------------------SEFKGHCN   72 (256)
Q Consensus        65 ------------------------------------------------------------------------~~~~~~~~   72 (256)
                                                                                              ....|.+.
T Consensus       146 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di  225 (291)
T d1s70b_         146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV  225 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             ccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc
Confidence                                                                                    00135566


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..+.++.++.
T Consensus       226 n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            77888999999999999999999999999999998887777777643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.2e-17  Score=136.03  Aligned_cols=96  Identities=25%  Similarity=0.252  Sum_probs=82.2

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------------------------------------------chhHH
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------------------------------------------RDGAL   40 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------------------------------------------g~t~L   40 (256)
                      .+..|.||||+|+.+|+.+++++|+++.++++                                           |.|||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCcc
Confidence            45679999999999999999999997633322                                           56888


Q ss_pred             H-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy4451          41 H-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPH  109 (256)
Q Consensus        41 ~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~  109 (256)
                      | |+..|+.+++++|+++          .|.+.+..|.+|.||||+|++.|+.|++++|+++||+++..+
T Consensus       224 ~~a~~~~~~~~v~~lL~~----------~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQ----------EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHS----------SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             chhhhcCcHHHHHHHHHc----------CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            8 8888888888888875          367788899999999999999999999999999999998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.3e-17  Score=131.14  Aligned_cols=103  Identities=22%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------------------------------------------------
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------------------------------------------------   35 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------------------------------------------------   35 (256)
                      .|.+|+||||+||.+|+.|++++|++. ++++                                                
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999999998 3332                                                


Q ss_pred             -------------------------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHc
Q psy4451          36 -------------------------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQL   89 (256)
Q Consensus        36 -------------------------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~   89 (256)
                                               |+||++ |+..+..++++.++++           +.+.+..+..|.||||.||..
T Consensus        98 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-----------~~~~~~~d~~g~TpL~~A~~~  166 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-----------HANRDAQDDKDETPLFLAARE  166 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-----------cccccccccccccccchhccc
Confidence                                     345565 6666666666666665           566778889999999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          90 GRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        90 g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      |+.+++++|+++|++++.++..+.++...
T Consensus       167 g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~  195 (209)
T d1ot8a_         167 GSYEASKALLDNFANREITDHMDRLPRDV  195 (209)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            99999999999999999988888888664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-17  Score=130.48  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc--------
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES--------   65 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~--------   65 (256)
                      |.+.|.+|+||||+|+.+|+.+++++|+++ |+++      |.+|++ |+..|+.++++.+++.+.......        
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  110 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             cccCCCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            356789999999999999999999999998 6665      779998 999999999999998765422110        


Q ss_pred             --------------------cccCCCCCC-CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          66 --------------------EFKGHCNSN-DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 --------------------~~~~~~~~~-~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                                          ...+...+. .+..|.||||.|+..|+.+++++|++.|+|++..+..+.++.+++
T Consensus       111 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             cchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHH
Confidence                                012334443 446799999999999999999999999999999998888887743

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.6e-17  Score=138.26  Aligned_cols=114  Identities=18%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCC-------HHHHHHHHhCCcCCC-----CC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDE-------INILKLILDWQKCHK-----PE   64 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~-------~~~v~~Ll~~~~~~~-----~~   64 (256)
                      +|.+|+||||+||..|+.++|++|+++ |+++      |+|||| |+..++       .++++.+.+.....+     +.
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            489999999999999999999999999 7776      889999 887654       245555433111000     00


Q ss_pred             ---------------------------------------------c------------------cccCCCCCCCCCCCCc
Q psy4451          65 ---------------------------------------------S------------------EFKGHCNSNDFPKCIT   81 (256)
Q Consensus        65 ---------------------------------------------~------------------~~~~~~~~~~~~~g~T   81 (256)
                                                                   .                  ...+...|.+|..|.|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T  261 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  261 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC
Confidence                                                         0                  0001125778999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      |||+||+.|+.+++++|++.|++++.++..+.++.+.
T Consensus       262 pLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~  298 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF  298 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            9999999999999999999999999999999988773

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2e-17  Score=135.52  Aligned_cols=92  Identities=24%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC---------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV---------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~---------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      ++|++|+||||+||.+|+.+++++|+++ ++++         |.|||| |+..|+.++++.|+++           |++.
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-----------ga~i   71 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-----------GAGV   71 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------TCCS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccc-----------cccc
Confidence            7899999999999999999999999987 4432         779999 9999999999999999           7778


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIP  106 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~  106 (256)
                      +..+.+|.||||.|+..++.+++++|++.+....
T Consensus        72 ~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~  105 (255)
T d1oy3d_          72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHP  105 (255)
T ss_dssp             SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSC
T ss_pred             cccccccchhhhhhhccCchHHHHHHHhhccchh
Confidence            8889999999999999999999999998876544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-17  Score=130.49  Aligned_cols=103  Identities=26%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ..+|.+|+||||+|+.+|+.|+++++++. +.+.      +.++++ |+..|+.++++.|+++           +.+.+.
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~-----------~~d~~~   98 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-----------GAQVNA   98 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----------TCCTTC
T ss_pred             cCcCCCCCCHHHHHHHhhhhccccccccc-ccccccccccccccccccccccccchhHHHhcc-----------CceeEe
Confidence            46799999999999999999999999987 3322      567887 9999999999999998           666778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCV  116 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~  116 (256)
                      .+..|.||||+|+..|+.|++++|+++|++++.....+.++.
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L  140 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM  140 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccc
Confidence            899999999999999999999999999999987766665554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.9e-17  Score=123.19  Aligned_cols=110  Identities=16%  Similarity=0.090  Sum_probs=92.7

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC-----chhHHH-HHHcCCHHHHHHHHhCCcCCCCC------------------
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV-----RDGALH-AIQCDEINILKLILDWQKCHKPE------------------   64 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~-----g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~------------------   64 (256)
                      .||||.||+.|+.++|++||++ |++.     |.|||| |+..++.++++.++.........                  
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            4999999999999999999998 5544     889999 99999999999998765533211                  


Q ss_pred             ----ccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          65 ----SEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        65 ----~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                          ....+.+.+..+..|.||||+|+..|+.+++++|++.|++++..+..+.++..++
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHH
Confidence                0124667788899999999999999999999999999999999888888887643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-17  Score=122.60  Aligned_cols=86  Identities=16%  Similarity=0.092  Sum_probs=76.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      ...|.+|+||||.|+ .|+.+++++|+++ |+++       +.+||| |+..|+.+++++|+++           |.+.+
T Consensus        30 n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-----------ga~~~   96 (125)
T d1bi7b_          30 NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARLD   96 (125)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-----------TCCSS
T ss_pred             ccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccccccccccccc-----------ccccc
Confidence            467899999999775 7999999999998 6654       347999 9999999999999999           77788


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHH
Q psy4451          74 NDFPKCITPLMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        74 ~~~~~g~TpL~lAa~~g~~eiv~~Ll~  100 (256)
                      .++..|.||||+|++.|+.|++++|++
T Consensus        97 ~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          97 VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            889999999999999999999999975

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.66  E-value=1.6e-16  Score=131.10  Aligned_cols=117  Identities=23%  Similarity=0.292  Sum_probs=94.5

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCc---CCC--------
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQK---CHK--------   62 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~---~~~--------   62 (256)
                      +..+|.+|+||||+|+.+|+.+++++|+++ |+++      |.||++ |+..++.++.+.+...+.   ...        
T Consensus        67 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  145 (277)
T d2fo1e1          67 VNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  145 (277)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             ccccCCCCCeeecccccccccccccccccc-ccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccch
Confidence            356899999999999999999999999999 7765      789998 999999999988865421   000        


Q ss_pred             ----------------------------------------CC-------------------ccccCCCCCCCCCCCCcHH
Q psy4451          63 ----------------------------------------PE-------------------SEFKGHCNSNDFPKCITPL   83 (256)
Q Consensus        63 ----------------------------------------~~-------------------~~~~~~~~~~~~~~g~TpL   83 (256)
                                                              .+                   ....+.+.+.++..|.|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL  225 (277)
T d2fo1e1         146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  225 (277)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             hHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHH
Confidence                                                    00                   0012445557788999999


Q ss_pred             HHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          84 MLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        84 ~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                      |.|++.|+.+++++|+++|++++..+..+.++...
T Consensus       226 ~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~  260 (277)
T d2fo1e1         226 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL  260 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999988888887653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.7e-16  Score=121.94  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHhcC---CCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc----------
Q psy4451           6 FQGVSALQTAIIKNDVMMVKYLLSL---PSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES----------   65 (256)
Q Consensus         6 ~~G~taLh~A~~~~~~~~v~~Ll~~---~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~----------   65 (256)
                      ++|+||||+||.+|+.++++.|++.   .|+++      |+|||| |+..|+.++++.|+++|++.+...          
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            4799999999999999999998852   24543      889999 999999999999999877432100          


Q ss_pred             --------------------------------------------------------------------------------
Q psy4451          66 --------------------------------------------------------------------------------   65 (256)
Q Consensus        66 --------------------------------------------------------------------------------   65 (256)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                                            


Q ss_pred             ---cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          66 ---EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 ---~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                         ...+...+.++..|.||||+|+..|+.|++++|+++|+|++.++..+.++..++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence               001233346678899999999999999999999999999999988888887743

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-16  Score=119.69  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=88.9

Q ss_pred             hHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHHHHHcCCHHHHHHHHhCCcCCCCCc------------------
Q psy4451          10 SALQTAIIKNDVMMVKYLLSLPSIKV------RDGALHAIQCDEINILKLILDWQKCHKPES------------------   65 (256)
Q Consensus        10 taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~------------------   65 (256)
                      +|||.||..|+.|+|+.|+++ |+++      |.||||++..|+.+++++|++++++.....                  
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence            899999999999999999998 7776      889999556899999999999988754211                  


Q ss_pred             ----cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC-CCCCCCCCCCcccccc
Q psy4451          66 ----EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGH-CIPYPHLPTCQCVQVC  119 (256)
Q Consensus        66 ----~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga-~i~~~~~~~~~~~~~~  119 (256)
                          ...+.+.+..+..|.+|++.|++.++.+++++|+++|+ +.+..+..+.++..++
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A  140 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA  140 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence                01355667788899999999999999999999998887 6777777777776543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.4e-16  Score=117.65  Aligned_cols=99  Identities=22%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      ...|.+|+||||+|+ .|+.|++++|+++ ++++      +.++++ ++..++.+.++.+++++.+.+...         
T Consensus        28 n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  105 (156)
T d1ihba_          28 NAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL  105 (156)
T ss_dssp             TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            567999999999886 7899999999998 6665      678998 999999999999999877653210         


Q ss_pred             --------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy4451          66 --------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERG  102 (256)
Q Consensus        66 --------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~g  102 (256)
                                    ...+.+.+.++..|.||||+|++.|+.+++++|+++|
T Consensus       106 a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         106 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                          1123467888999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.2e-16  Score=118.30  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             hHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHHHHHcCCHHHHHHHHhCCcCCCCCc------------------
Q psy4451          10 SALQTAIIKNDVMMVKYLLSLPSIKV------RDGALHAIQCDEINILKLILDWQKCHKPES------------------   65 (256)
Q Consensus        10 taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~A~~~g~~~~v~~Ll~~~~~~~~~~------------------   65 (256)
                      ++||.||.+|+.++|+.|+++.+.++      |+||||++..|+.++++.|++++.+.+...                  
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34666666666666666555433333      555665333455566666665554432110                  


Q ss_pred             ----cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          66 ----EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        66 ----~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                          ...+.+.+.++..|.||||+|++.|+.+++++|+ .|++++.++..+.++...
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~  139 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLEL  139 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHH
Confidence                0126667788889999999999999999999877 789999888888777663

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-16  Score=116.38  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=75.4

Q ss_pred             CcccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           1 MFYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         1 ~~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      +...|++|+||||+|+..|+.+++++|+++ ++++      |+|||| |+..|+.+++++|+++           |++.+
T Consensus        27 ~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-----------ga~v~   94 (130)
T d1ycsb1          27 PSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-----------GAAVF   94 (130)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTT
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHHHHHHHHHc-----------CCCcc
Confidence            356799999999999999999999999998 5554      889999 9999999999999999           55555


Q ss_pred             CCC-CCCCcHHHHH--HHcCcHHHHHHHHHCC
Q psy4451          74 NDF-PKCITPLMLA--AQLGRLEIVALLLERG  102 (256)
Q Consensus        74 ~~~-~~g~TpL~lA--a~~g~~eiv~~Ll~~g  102 (256)
                      ..+ .++.||++++  ++.|+.|++++|++.+
T Consensus        95 ~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          95 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            444 4578887765  5788999999998653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-15  Score=114.08  Aligned_cols=84  Identities=20%  Similarity=0.292  Sum_probs=74.1

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHhcCCCCC--------------------------------C------chhHHH-HHH
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKYLLSLPSIK--------------------------------V------RDGALH-AIQ   44 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~--------------------------------~------g~t~L~-A~~   44 (256)
                      .|..|+||||+|+..++.++++.++......                                .      |.|||| |+.
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            5889999999999999999999988763111                                0      779999 999


Q ss_pred             cCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q psy4451          45 CDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALL   98 (256)
Q Consensus        45 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~L   98 (256)
                      .|+.+++++|+++           |++.+.++..|.||||+|+.+|+.|++++|
T Consensus       110 ~g~~~iv~~ll~~-----------gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         110 HNHQEVVELLIKY-----------GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHHHHT-----------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhheeeecccc-----------ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999           777888899999999999999999999976

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.9e-16  Score=133.03  Aligned_cols=113  Identities=22%  Similarity=0.188  Sum_probs=77.6

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc------------
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES------------   65 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~------------   65 (256)
                      |.+|.||||.|+..++.++++.+.+. +...      |.+|++ |+..++.+++++|+++|++.+...            
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH  306 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcc
Confidence            44555566666666666665555554 2211      445555 555556666666555554432110            


Q ss_pred             ----------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCccccc
Q psy4451          66 ----------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQV  118 (256)
Q Consensus        66 ----------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~  118 (256)
                                ...|.+.+.++..|.||||.|++.|+.+++++|+++||+++..+..+.++...
T Consensus       307 ~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             SSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             cCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence                      01377888999999999999999999999999999999999988888888773

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=2.3e-15  Score=119.33  Aligned_cols=85  Identities=22%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ..+|..|+|||+.|+.+++.++++.+++. +.++      |.|||| |+..|+.++++.|+++           |++.+.
T Consensus       117 ~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-----------gad~n~  184 (209)
T d1ot8a_         117 NAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKALLDN-----------FANREI  184 (209)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------TCCTTC
T ss_pred             cccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHHHHHC-----------CCCCCC
Confidence            35788999999999999999999999998 4433      889999 9999999999999999           677778


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHH
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALL   98 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~L   98 (256)
                      +|..|.||||+|+++|+.|++++|
T Consensus       185 ~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         185 TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            899999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.60  E-value=1.2e-17  Score=144.22  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHH---HhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCC
Q psy4451           4 LLFQGVSALQTAIIKNDVMMVKY---LLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNS   73 (256)
Q Consensus         4 ~d~~G~taLh~A~~~~~~~~v~~---Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~   73 (256)
                      .|.+|+||||+||++||.+++++   |++. |+++      |+|||| |+.+||.++|++|+++|+           +.+
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-----------~~~  153 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP-----------TEI  153 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-----------TTH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----------Ccc
Confidence            46778888888888888776665   5555 5544      678888 888888888888888844           333


Q ss_pred             CCC--CCCCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy4451          74 NDF--PKCITPLMLAAQLGRLEIVALLLERGHCI  105 (256)
Q Consensus        74 ~~~--~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i  105 (256)
                      ..+  .+|.||||+||+.|+.|++++|++.|++.
T Consensus       154 ~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            322  34678888888888888888888887754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=4.2e-15  Score=113.55  Aligned_cols=97  Identities=16%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             HHHHHHHhCCHHHHHHHhcCCCCCC------------chhHHH-HHH---cCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451          11 ALQTAIIKNDVMMVKYLLSLPSIKV------------RDGALH-AIQ---CDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus        11 aLh~A~~~~~~~~v~~Ll~~~~~~~------------g~t~L~-A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      .|..|+++++.+.+..++.. |.+.            |+|||| |+.   .|+.+++++|+++           |.+.+.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-----------gadin~   76 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-----------SGNLDK   76 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-----------CSCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-----------CCChhh
Confidence            45688899999999988877 4432            789999 886   4678999999998           777888


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccccc
Q psy4451          75 DFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQVC  119 (256)
Q Consensus        75 ~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~~~  119 (256)
                      ++..|.||||.|+..|+.+++++|+++|++++.++..+.++...+
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  121 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             hhhhhccccccccccccccccccccccCccccccCCCCCCHHHHH
Confidence            999999999999999999999999999999999999888887633

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=6.5e-17  Score=118.15  Aligned_cols=74  Identities=20%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSN   74 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   74 (256)
                      ...|.+|+||||+|+.+|+.+++++|+++ |+++      |+|||| |+..|+.+++++|+++           |++.+.
T Consensus        29 n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-----------Gad~~~   96 (118)
T d1myoa_          29 NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-----------GADKTV   96 (118)
T ss_dssp             CCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTT-----------CCCSSS
T ss_pred             ccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCchhhhhhhhcc-----------ccccee
Confidence            46789999999999999999999999998 6654      889999 9999999999999999           777888


Q ss_pred             CCCCCCcHHHHHH
Q psy4451          75 DFPKCITPLMLAA   87 (256)
Q Consensus        75 ~~~~g~TpL~lAa   87 (256)
                      ++.+|.||||+|.
T Consensus        97 ~d~~G~t~l~~a~  109 (118)
T d1myoa_          97 KGPDGLTALEATD  109 (118)
T ss_dssp             SSSSTCCCCCTCS
T ss_pred             eCCCCCCHHHHHh
Confidence            9999999999883

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-15  Score=129.35  Aligned_cols=92  Identities=24%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCc
Q psy4451           9 VSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCIT   81 (256)
Q Consensus         9 ~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~T   81 (256)
                      .||||.||.+|+.++|++|+++ |+++      |+|||| |+..|+.+++++|+++           |++.+..+..|.|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-----------gadi~~~~~~g~t   68 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-----------KAKVNAKAKDDQT   68 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-----------TCCSSCCCTTSCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------cCCCCCCCCCCCC
Confidence            3899999999999999999998 6665      889999 9999999999999999           6677888999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy4451          82 PLMLAAQLGRLEIVALLLERGHCIPYPHLPT  112 (256)
Q Consensus        82 pL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~  112 (256)
                      |||.|+..|+.+++++|+..+.+........
T Consensus        69 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   99 (408)
T d1n11a_          69 PLHCAARIGHTNMVKLLLENNANPNLATTAG   99 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccccccccc
Confidence            9999999999999999999888776554433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-15  Score=111.67  Aligned_cols=98  Identities=20%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCc---------
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPES---------   65 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~---------   65 (256)
                      +..|.+|+||||.|+ .++.++++.|+++ +.++      |.+|++ |+..++.++++.+++++++.+...         
T Consensus        30 n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~  107 (156)
T d1bd8a_          30 DALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL  107 (156)
T ss_dssp             TCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CccCCCCCccccccc-ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCeeecc
Confidence            345666666666665 3566666666665 3332      334444 445555555555554444322110         


Q ss_pred             ------------cccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy4451          66 ------------EFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLER  101 (256)
Q Consensus        66 ------------~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~  101 (256)
                                  ...+.+.+.++..|.||||+|+..|+.|++++|+++
T Consensus       108 A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         108 AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                        012667788899999999999999999999999975

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.6e-15  Score=121.92  Aligned_cols=89  Identities=13%  Similarity=-0.030  Sum_probs=78.3

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|.+|+||||.|+..|+.+++++|++.+..++      |+|||| |+..|+.+++++|+++          .|++.+.+
T Consensus       133 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~----------~gad~~~~  202 (229)
T d1ixva_         133 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----------YGAEYDLV  202 (229)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH----------HCCCSCCC
T ss_pred             ccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh----------cCCCCCCc
Confidence            468899999999999999999999999843332      889999 9999999999999964          27778889


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      |.+|.||||+|+   +.+++++|+++|+|
T Consensus       203 d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         203 DNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999999999997   46899999999997

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.56  E-value=5.3e-16  Score=133.71  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=80.8

Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC--------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCC
Q psy4451           2 FYLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV--------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCN   72 (256)
Q Consensus         2 ~~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~--------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~   72 (256)
                      ..+|.+|.||||+||++||.++|++|+++ |+++        |+|||| |+.+|+.+++++|+++|++        ..+.
T Consensus       120 n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~--------~~~~  190 (346)
T d2ajaa1         120 KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT--------EATA  190 (346)
T ss_dssp             C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG--------GHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc--------cccc
Confidence            46788899999999999999999999999 6665        679999 9999999999999998432        1122


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy4451          73 SNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYP  108 (256)
Q Consensus        73 ~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~  108 (256)
                      +..+..+.||++.|++.|+.|++++|++.|++++.+
T Consensus       191 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~  226 (346)
T d2ajaa1         191 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA  226 (346)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHH
T ss_pred             ccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchH
Confidence            334456778888899999999999999999988744

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=3e-14  Score=118.43  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFP   77 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~   77 (256)
                      +.+|.|||+.||+.|+.++|++|+++ |+++      |.|||| |+..|+.+++++|+++           +.+.+..+.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-----------~~~~~~~~~  104 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVEN-----------GANINQPDN  104 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-----------TCCTTCCCT
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccc-----------ccccccccc
Confidence            45567999999999999999999998 6765      789999 9999999999999999           555666777


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCcccc
Q psy4451          78 KCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        78 ~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~~~~  117 (256)
                      .+.|||+.|+..++.++++.|++.|++.+..+..+.++..
T Consensus       105 ~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (291)
T d1s70b_         105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (291)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccccccccccccchhhcccccCcccccccccCccccc
Confidence            8899999999999999999999999988877666555543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.48  E-value=3.4e-14  Score=116.83  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHhcCCCCCC------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCC
Q psy4451           3 YLLFQGVSALQTAIIKNDVMMVKYLLSLPSIKV------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSND   75 (256)
Q Consensus         3 ~~d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   75 (256)
                      ..|..|+||||.++..++.++++.++...+.+.      |.|||| |+..|+.+++++|+++           |++.+.+
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-----------gadin~~  250 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------GASVEAV  250 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----------TCCSSCC
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-----------cCCCCCc
Confidence            356789999999999999999998775434332      789999 9999999999999999           7778889


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHH
Q psy4451          76 FPKCITPLMLAAQLGRLEIVALLLE  100 (256)
Q Consensus        76 ~~~g~TpL~lAa~~g~~eiv~~Ll~  100 (256)
                      |..|.||||+|++.|+.|++++|++
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-13  Score=112.54  Aligned_cols=82  Identities=23%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhC-CcCCCCCc--------------------------cccCCCCCCCCCCCCcHHHHHH
Q psy4451          36 RDGALH-AIQCDEINILKLILDW-QKCHKPES--------------------------EFKGHCNSNDFPKCITPLMLAA   87 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~-~~~~~~~~--------------------------~~~~~~~~~~~~~g~TpL~lAa   87 (256)
                      |.|||| |+..|+.++++.|+++ |++++...                          ...|++.+.++..|.||||.|+
T Consensus       148 g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~  227 (285)
T d1wdya_         148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhh
Confidence            567898 9999999999999875 44443210                          0146677888999999999999


Q ss_pred             HcCcHHHHHHHHH-CCCCCCCCCCCCCcccc
Q psy4451          88 QLGRLEIVALLLE-RGHCIPYPHLPTCQCVQ  117 (256)
Q Consensus        88 ~~g~~eiv~~Ll~-~ga~i~~~~~~~~~~~~  117 (256)
                      +.|+.|++++|++ .|++++..+..+.++..
T Consensus       228 ~~~~~~~v~~lL~~~g~din~~d~~G~TpL~  258 (285)
T d1wdya_         228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALL  258 (285)
T ss_dssp             HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred             hcCcHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            9999999999997 59999988877777665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.6e-14  Score=113.78  Aligned_cols=88  Identities=23%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHhcCCCCCC-------chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCC
Q psy4451           5 LFQGVSALQTAIIKNDVMMVKYLLSLPSIKV-------RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDF   76 (256)
Q Consensus         5 d~~G~taLh~A~~~~~~~~v~~Ll~~~~~~~-------g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   76 (256)
                      +.+|.||||.|+..++.+.+++|++. +.+.       |.|||| |+..|+.+++++|+++           |++.+.++
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~-----------gad~~~~~  175 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-----------GADVNRVT  175 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT-----------TCCSCCCC
T ss_pred             ccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHHHHHHHHhc-----------CCcccccC
Confidence            34567777777777777777777766 3221       789999 9999999999999998           77788899


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy4451          77 PKCITPLMLAAQLGRLEIVALLLERGHC  104 (256)
Q Consensus        77 ~~g~TpL~lAa~~g~~eiv~~Ll~~ga~  104 (256)
                      .+|.||||+|+.+++.+++++|++.+.+
T Consensus       176 ~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         176 YQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999999999999999988764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-12  Score=102.51  Aligned_cols=74  Identities=19%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCc
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAAQLGRLEIVALLLERGHCIPYPHLPTCQ  114 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa~~g~~eiv~~Ll~~ga~i~~~~~~~~~  114 (256)
                      |+|||| |+..|+.++++.|++...       ..|.+.+.++..|.||||.|+..|+.+++++|++.|++.+.....+..
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~-------~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQ-------QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHH-------HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHH-------HCCCCCCccCCCCCccceehhccccccccccccccccccccccccccc
Confidence            899999 999999999999886311       027778889999999999999999999999999999999877766555


Q ss_pred             cc
Q psy4451         115 CV  116 (256)
Q Consensus       115 ~~  116 (256)
                      +.
T Consensus        76 ~~   77 (228)
T d1k1aa_          76 AA   77 (228)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.1e-09  Score=91.37  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             chhHHH-HHHcCCHHHHHHHHhCCcCCCCCccccCCCCCCCCCCCCcHHHHHH
Q psy4451          36 RDGALH-AIQCDEINILKLILDWQKCHKPESEFKGHCNSNDFPKCITPLMLAA   87 (256)
Q Consensus        36 g~t~L~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~g~TpL~lAa   87 (256)
                      |+|||| |+++|+.+++++|+++           |++.+.+|..|.|||++||
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~-----------GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDY-----------GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHT-----------TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-----------CCCCCCCCCCCCCHHHHcC
Confidence            789999 9999999999999999           7778889999999999985