Psyllid ID: psy4474
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2174 | 2.2.26 [Sep-21-2011] | |||||||
| Q6ZWR6 | 8799 | Nesprin-1 OS=Mus musculus | yes | N/A | 0.242 | 0.060 | 0.195 | 2e-08 | |
| O97592 | 3680 | Dystrophin OS=Canis famil | yes | N/A | 0.135 | 0.079 | 0.220 | 8e-08 | |
| Q5GN48 | 3674 | Dystrophin OS=Sus scrofa | no | N/A | 0.137 | 0.081 | 0.210 | 3e-06 | |
| P11531 | 3678 | Dystrophin OS=Mus musculu | yes | N/A | 0.159 | 0.094 | 0.213 | 3e-05 |
| >sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 121/620 (19%), Positives = 250/620 (40%), Gaps = 92/620 (14%)
Query: 234 LKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQ 293
L+ + W Y E + L W++ +++L ++L+ L EK + L +++I +A H
Sbjct: 2726 LESVIDQWNDYLEKKSQLEQWMESVDQRLEHPLQLQPGLKEKFSLLDHFQSIVSEAEDHT 2785
Query: 294 QDLLQLKDKIESLHQPSEQSKQQLAT---ITTRHGNVLKRAQKFTEAYEGIVSIHQAYTK 350
L QL K L+Q ++ + A + T+ +++ A++ E +V H Y
Sbjct: 2786 GALQQLAAKSRELYQKTQDESFKEAGQEELRTQFQDIMTVAKEKMRTVEDLVKDHLMYLD 2845
Query: 351 AVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNL----EKELGRIGHKTVALKNN 406
AV + +W+ + ++ W D + + + L ++K L E GR+ + +L
Sbjct: 2846 AVQEFADWLHSAKEELHRWSDTSGDPSATQKKLLKIKELIDSREIGAGRLS-RVESLAPA 2904
Query: 407 VLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIW----NDFLSSKNTLE 462
V ++T G E +N E+ + DW ++ L +S +F LE
Sbjct: 2905 VKQNTAASGCELLNSEMQALRADWRQWEDCLFQTQSSLESLVSEMALSEQEFFGQVTQLE 2964
Query: 463 KWIEGFQKKIE-------------AEKDIGDCTN-----LDDLEKYKALLQEVISHNSDM 504
+ +E F ++ ++++I +C + LD L+K + + +++ S
Sbjct: 2965 QALEQFCTLLKTWAQQLTLLEGKNSDEEILECWHKGREILDALQKAEPMTEDLKSQ---- 3020
Query: 505 ETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEE 564
LN+ C +L SP E+ L Y L E+ L Q F
Sbjct: 3021 --LNELCRFSRDL---SPYSEKVSGLIKEYNCLCLQASKGCQNKEQIL--QERFQKASRG 3073
Query: 565 VEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPE-------GQHLMSVLQDTFT 617
+ WL A T +C L + L V+ ++I E GQH ++ + F
Sbjct: 3074 FQQWLVNAKITTAKCFD------LPQNLSEVSSSLQKIQEFLSESENGQHKLNTM--LFK 3125
Query: 618 KALDTT--PSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNM 675
L ++ ++ +++ + ++ W + +L + L++ + + +
Sbjct: 3126 GELLSSLLTEEKAQAVQAKVLTAKEEWKSFHANLHQKESALENLKIQMKDFEVSAELVQN 3185
Query: 676 WLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERS 735
WLS E + E S ++ + QQ +
Sbjct: 3186 WLSKTERLVQESSNRLYDLPAKRREQQKLQS----------------------------- 3216
Query: 736 KHIVDDIEKKKDDLKPIQKEAQQLSEWDS---SIVPKVSDLETRWAAVKSAWDAKHSDLS 792
++++I+ + L ++++A+QL E + S V +VS L +++ A+ + K S L
Sbjct: 3217 --VLEEIQCYEPQLHRLKEKARQLWEGQAASKSFVHRVSQLSSQYLALSNVTKEKVSRLD 3274
Query: 793 SEIAQYSSYQNAVQDAEKWL 812
IA+++ + V++ + W+
Sbjct: 3275 RIIAEHNRFSQGVKELQDWM 3294
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Multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain the subcellular spatial organization. Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Involved in the maintenance of nuclear organization and structural integrity. Connects nuclei to the cytoskeleton by interacting with the nuclear envelope and with F-actin in the cytoplasm (By similarity). Required for centrosome migration to the apical cell surface during early ciliogenesis. Mus musculus (taxid: 10090) |
| >sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1 | Back alignment and function description |
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| >sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2174 | ||||||
| 270014225 | 15417 | muscle-specific protein 300 [Tribolium c | 0.281 | 0.039 | 0.341 | 9e-99 | |
| 189240992 | 12040 | PREDICTED: similar to Muscle-specific pr | 0.281 | 0.050 | 0.341 | 3e-98 | |
| 322802858 | 2112 | hypothetical protein SINV_80335 [Solenop | 0.257 | 0.265 | 0.342 | 3e-92 | |
| 195576696 | 924 | GD23325 [Drosophila simulans] gi|1941902 | 0.258 | 0.609 | 0.337 | 1e-88 | |
| 328698597 | 4882 | PREDICTED: hypothetical protein LOC10016 | 0.277 | 0.123 | 0.339 | 5e-88 | |
| 195437272 | 7988 | GK24496 [Drosophila willistoni] gi|19416 | 0.260 | 0.070 | 0.339 | 6e-88 | |
| 194856553 | 8391 | GG25055 [Drosophila erecta] gi|190660642 | 0.258 | 0.067 | 0.339 | 7e-88 | |
| 195472759 | 8015 | GE11346 [Drosophila yakuba] gi|194174767 | 0.258 | 0.070 | 0.337 | 8e-88 | |
| 194760671 | 8003 | GF14378 [Drosophila ananassae] gi|190616 | 0.260 | 0.070 | 0.341 | 1e-87 | |
| 195342674 | 8290 | GM18531 [Drosophila sechellia] gi|194132 | 0.258 | 0.067 | 0.337 | 2e-87 |
| >gi|270014225|gb|EFA10673.1| muscle-specific protein 300 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 237/694 (34%), Positives = 390/694 (56%), Gaps = 81/694 (11%)
Query: 192 LKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTE--RELKGKLSSWCGYEESVA 249
L+ IS+L+E + I Q QED + L + L +E + +L++ E +A
Sbjct: 5429 LRYISELKERV-IMNTEQSGAAKIQEDTENLKQDMEKLLNEVQEARNRLTNRASQLEEIA 5487
Query: 250 TL----LDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIES 305
L LDWL+ E ++ + E L EKKA+L+ ++ + ++ +H D IE
Sbjct: 5488 KLHMLLLDWLQDIEHQVQSDDEFLNDLSEKKAKLEKFKAVQKEIKTH-------TDLIEK 5540
Query: 306 LHQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI---DAT 362
L K +LA ++ +A ++ +++ ++ Q+ K++ D ++ + +
Sbjct: 5541 L-------KAKLAEDSSL------KADEYENSFKKYEALKQSVAKSIADLEKQVGDHEQY 5587
Query: 363 YNAVNMWGDLTLERV-------SLHSNLERLKNLEKELGRIG----------HKTVALKN 405
N+ N+ +L + LH L+++ E ++ I HKT+ L
Sbjct: 5588 KNSYNVAMELIRKSCVEAQTCSDLHDELDKILEKEAKISEIASSLPECDNLVHKTIELSI 5647
Query: 406 NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWI 465
V+++TG GK+ I QEI Q+ +DW L K +C W +F ++ + ++K I
Sbjct: 5648 LVMKTTGEEGKDTIKQEIEQLNMDWEGLHLICNETQKSITRCKDAWKEFKTNFDKMKKCI 5707
Query: 466 EGFQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIRE 525
+ FQK+++ E + T +DL++ K LL E+++ ++E L D CEALMEL+A +R+
Sbjct: 5708 DNFQKRVDGENEKEKKTP-EDLDRCKQLLAEIVAEKPNLEILTDSCEALMELSAVGWVRD 5766
Query: 526 ETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSK 585
+T++LQ Y L+T+ Q LVS++EKNLSD TEFL K+E+E WLH AH +VQ+C G G +
Sbjct: 5767 KTVQLQTAYTNLLTNCQTLVSKIEKNLSDHTEFLKVKKELETWLHSAHKSVQDCIGVGDE 5826
Query: 586 NVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRL 645
+ ++E+L+T+ +++ + PEGQ L++ LQD F+KA++TTP+D+QD LRE MT LR+SWD+L
Sbjct: 5827 DTIREKLETIRVISAKTPEGQVLLTKLQDAFSKAINTTPADKQDGLREDMTSLRNSWDQL 5886
Query: 646 NRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVN 705
N DL S QLK+ +ARW++ ++ R WLS E L E
Sbjct: 5887 NMDLTSIQAQLKAALARWDDYNETKRRLQDWLSQTERILKE------------------- 5927
Query: 706 DELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEW--D 763
+ H++ L S+MKTLLER K++ +I+ K+ DL ++ EA +LS W
Sbjct: 5928 -----KPHTKGEL-------SEMKTLLERYKNLQVEIKNKQGDLNRLKDEAVELSSWAKQ 5975
Query: 764 SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHN 823
++ +V L+T + + + DA+ + +E+ +Y++Y ++Q+ EKWLLQISFQLMAHN
Sbjct: 5976 PKVLEEVKQLQTLYDNLSTLCDAQKERIEAEMLEYNNYHQSLQETEKWLLQISFQLMAHN 6035
Query: 824 SLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDA 857
SLYI NR+QT EQ+ HE LL++ +YQ + D
Sbjct: 6036 SLYITNREQTEEQLTQHEILLKEIQNYQKTLDDV 6069
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Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189240992|ref|XP_001809722.1| PREDICTED: similar to Muscle-specific protein 300 CG33715-PD [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|322802858|gb|EFZ23050.1| hypothetical protein SINV_80335 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|195576696|ref|XP_002078211.1| GD23325 [Drosophila simulans] gi|194190220|gb|EDX03796.1| GD23325 [Drosophila simulans] | Back alignment and taxonomy information |
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| >gi|328698597|ref|XP_003240679.1| PREDICTED: hypothetical protein LOC100167295 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|195437272|ref|XP_002066564.1| GK24496 [Drosophila willistoni] gi|194162649|gb|EDW77550.1| GK24496 [Drosophila willistoni] | Back alignment and taxonomy information |
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| >gi|194856553|ref|XP_001968775.1| GG25055 [Drosophila erecta] gi|190660642|gb|EDV57834.1| GG25055 [Drosophila erecta] | Back alignment and taxonomy information |
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| >gi|195472759|ref|XP_002088666.1| GE11346 [Drosophila yakuba] gi|194174767|gb|EDW88378.1| GE11346 [Drosophila yakuba] | Back alignment and taxonomy information |
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| >gi|194760671|ref|XP_001962561.1| GF14378 [Drosophila ananassae] gi|190616258|gb|EDV31782.1| GF14378 [Drosophila ananassae] | Back alignment and taxonomy information |
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| >gi|195342674|ref|XP_002037925.1| GM18531 [Drosophila sechellia] gi|194132775|gb|EDW54343.1| GM18531 [Drosophila sechellia] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2174 | ||||||
| UNIPROTKB|F1NG02 | 8787 | SYNE1 "Uncharacterized protein | 0.839 | 0.207 | 0.175 | 6.5e-22 | |
| UNIPROTKB|Q8NF91 | 8797 | SYNE1 "Nesprin-1" [Homo sapien | 0.906 | 0.223 | 0.188 | 1.3e-22 | |
| MGI|MGI:1927152 | 8799 | Syne1 "spectrin repeat contain | 0.551 | 0.136 | 0.200 | 2.4e-22 | |
| UNIPROTKB|E7ENN3 | 8409 | SYNE1 "Nesprin-1" [Homo sapien | 0.333 | 0.086 | 0.203 | 9.5e-33 | |
| ZFIN|ZDB-GENE-030131-4172 | 8130 | syne1a "spectrin repeat contai | 0.402 | 0.107 | 0.192 | 1.4e-32 | |
| UNIPROTKB|E9PEL9 | 8749 | SYNE1 "Nesprin-1" [Homo sapien | 0.906 | 0.225 | 0.188 | 2.8e-24 | |
| UNIPROTKB|F1PER7 | 8764 | SYNE1 "Uncharacterized protein | 0.344 | 0.085 | 0.206 | 7.2e-29 | |
| ZFIN|ZDB-GENE-071218-4 | 8759 | syne1b "spectrin repeat contai | 0.809 | 0.200 | 0.188 | 5.4e-29 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.782 | 0.794 | 0.186 | 6.9e-28 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.782 | 0.791 | 0.186 | 1.8e-27 |
| UNIPROTKB|F1NG02 SYNE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 355/2021 (17%), Positives = 781/2021 (38%)
Query: 141 KTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEE 200
K+ Q +LSH+ ++S+++K ++L + D L+ I + Y +L + LE
Sbjct: 3844 KSMQQTILSHEPSVKSVIEKGEALFDLVNDVTLKSNIQDLQSDYHELCSAAKAYVETLEV 3903
Query: 201 SLDIXXXXXXXXKAYQEDQKQLWDKLSSLTERELKG---------KLSSWCGYEESVATL 251
+ QE +K L S L +L +L++ E +A
Sbjct: 3904 RVK---EHEDYNSDLQEGEKWLLHMSSRLVSPDLMENNSLEVITQQLANHKAIMEEIAGF 3960
Query: 252 LDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSE 311
D L + K GD + + T + +A+ + Q+ SH Q I S Q
Sbjct: 3961 EDCLNKLKSK-GDYLINQCT-EHLQAKFK------QNIQSHLQGTRDSYSAICSTAQRVY 4012
Query: 312 QSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWID---ATYNAVNM 368
QS + H + L++ Q + + + ++ D + + A N
Sbjct: 4013 QSLEHELQKHVNHQDTLQQCQTWLTTVQSELKPSTWTPFSLADAVKQVKHFRALQEQANT 4072
Query: 369 WGDLTLERVSLHSXXXXXXXXXXXXGRIGHKTVALKNNVLESTGPI-GKENINQEINQIT 427
+ DL L I ++ ++ S G E I Q ++
Sbjct: 4073 YLDLLCSMCDLSDATVKSTATD-----IQQTKQMIEQQIMHSQYLAQGWEEIKQMKAELW 4127
Query: 428 LDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDL 487
+ + + LQ + + A+ L + N ++ L+ ++ F +K+++++ T++
Sbjct: 4128 IYFQDADQQLQNLKRRRAE-LEL-N--IAQNMVLQ--VKEFSQKLQSKQSA--LTSVT-- 4177
Query: 488 EKYKALLQEVIS-HNSDMETLNDKCEALMELAAHSPI--REETLRLQALYAALVTSVQGL 544
EK L Q S + ++ L+++ L L AHS + REE L+ Y + V+
Sbjct: 4178 EKINKLTQGQESPEHKEIGQLSNQWLDLC-LQAHSLLIQREEDLQRTVDYHDRMNVVELF 4236
Query: 545 VSQVEK---NLS----DQTEF-LAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVN 596
+ ++ K NL+ + T L E++ L + +++ K V LD
Sbjct: 4237 LEKLTKEWDNLARSDAESTNVHLEALEKLALTLQERRFALEDLKDQKQKMVEHLNLDDKE 4296
Query: 597 MVAERIPEGQHLMSVLQDTFTKALDTTPSDQQD------SLREAMTVLRDSWDRLNRDLK 650
+V E+ + + L++ + + + S ++ L+E M + ++ LK
Sbjct: 4297 LVKEQFGHFEQRWTQLEELVKRKMQISVSTLEEFSLVHSKLQELMEWAEEQQPSISEALK 4356
Query: 651 STSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEW 710
+ + + L + + ++ L + V T + LN + Q + L
Sbjct: 4357 HSPPPDLAQSLLMDHLT-ICSELEAKQLVLKTLLKDAERVMTSLGLNER--QELQKALSD 4413
Query: 711 ENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWDSSIV-PK 769
H + L SD+ + +R KH+ + +K L I + Q+ + + + P+
Sbjct: 4414 AQHHVDCL-------SDL--VGQRRKHLNKALSEKTQFLLAIFQATNQIHQHEKKVTFPE 4464
Query: 770 -----VSDLETRWAAVKSAWDAKHSDLSSEIAQ-YSSYQNAVQDA-EKWLLQISFQLMAH 822
D+ + K+A A +E+ ++ ++ +++A E+ ++ +L
Sbjct: 4465 HICLLPEDVNKQIRTCKNA-QASLKAYQNEVTGLWTQGRDLMKEATEQEKSEVLGKLQEL 4523
Query: 823 NSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQ---ISF---QLMAHNS-LY 875
++Y Q+ +++ EK + ++ + A WL Q ++F +M NS LY
Sbjct: 4524 QNIYDTVLQKCTQRLLELEKNIVSRKYFKEDLDKACHWLKQADIVTFPEVNVMNSNSELY 4583
Query: 876 --INNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDR 933
++ QQ LEQ +E LL + ++ P + + S + +K++ L ++ +
Sbjct: 4584 TQLSKYQQILEQSPEYENLLL-ALQRHGQEILPSLNEVDHSYLDEKLNILPQQFNIVTAL 4642
Query: 934 IQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNE 993
+D + + I RKE+ +E L EL+ K ++ +E+++ +
Sbjct: 4643 AKDKFYKVQEAIYARKEYTSLIELTTKALTELDDQFINMDKAPASVLAKEVVSLQQAYRD 4702
Query: 994 EAGELNMMISNVSIATEHMNLN-DADRLTVN----DSVSSMQKRYAQLSRTIEDRISTVN 1048
GE + ++ A + +N +A R T D + + Y +L R IE +IS +
Sbjct: 4703 LLGE----VMSLGAAVDELNQKKEAFRSTGQPWQPDEMLKLATLYHKLKRQIEQKISLLE 4758
Query: 1049 NKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQS 1108
+ +++ + + + +A L+ +++ + V+ + I E L +Y L+
Sbjct: 4759 DTVEACQEHEKMCTQLEAQLEAVKNEQIK-VNEEMLPIEEKLKIYHSLVGS--------- 4808
Query: 1109 DEDLVHLADSIKPLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEV 1168
L DS L + E IE + P+L L L Q + + +G++
Sbjct: 4809 ------LQDSGSLLKRITEHIETLS-PQLDPSALETTNHQVLSWQ--DKLKNLHSAIGDI 4859
Query: 1169 --DGNSATVQEXXXXXXXXXXXXQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRK 1226
D + VQ + + + ++ +LS D + E ++Q +
Sbjct: 4860 VMDCENRLVQSIDFQTEIC----RSLDWLRWVKTELNGKLSLDLKLQSIQEEIRKVQIHQ 4915
Query: 1227 QQLHNLRKTVEKLRQQNEKRAAESEKLGXXXXXXXXXXHARETAVPSSSRLHNLRKTVEK 1286
+++ + + + L + ++R ++++L E +H + T++K
Sbjct: 4916 EEVQSSLRVMNALSNKEKERYMKAKEL-IPADLENTLAELAELDSEVQEAIHMRQATLDK 4974
Query: 1287 LRQQNEKRAAESEKLGXXXXXXXXXXHARETA--VKTLPVLL---LEVTSVDVELDKQRL 1341
L ++ + H V+ L +E S + +
Sbjct: 4975 LYSLCQRYYQVIQITNDWLEDAQEFLHLTRNGLDVENSEGNLGNHIEFFSTESQFSNNLK 5034
Query: 1342 ELA--TKEVQPYV--QRYETLKKNIAEAIDK-------FETQ-------ANEHEAYKQAY 1383
EL E++P++ E L +N+A +K +TQ A+E + Y+ A
Sbjct: 5035 ELQGLVSELEPFILATAREQLMQNLASLEEKGKGTKQEAKTQQELLQRCASEWQEYQTAR 5094
Query: 1384 NEAYDWLRKA--KLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNV 1441
+ + + +A KL + A + ++K K + + + I T+ K +
Sbjct: 5095 QKVIEVMNEAEKKLSEFSVAKAASSHEA-EEKLQTHKTLVSVVNSFHEKIT-TLEEKASQ 5152
Query: 1442 LES-TGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIE 1500
LE + K +N+ + + WT L+N Q+ +K + W F I+
Sbjct: 5153 LEKVSNDASKATVNRSVTTVWQRWTRLRNVAQEQEKILEDAVQEWKGFNDKIQKATVVID 5212
Query: 1501 GFQKKI-ESEKDIGDCTNLDDLEKY-KALLQEGLHKEADNKKVLIDSFNKGIIGMTELE- 1557
Q ++ ES + T L +L Y + L E H+ + + + N ++ E++
Sbjct: 5213 QLQDRLPESSVEKASKTELLELLDYHSSFLLEVEHQLSSLGLLKQHALN--MLQDVEIKP 5270
Query: 1558 -SEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYID 1616
S+E ++Q V +Q + + Q ++ + V +ER+ ++ +I+ +++W+++ +
Sbjct: 5271 LSQEEVPVMQE-VKAMQDRCHNMQQKVKKSVKLVKQELKEREDVEAQINVVKTWIQETKE 5329
Query: 1617 YSGNKQALQSRLD-KVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLR 1675
Y N +D ++ E++ E++T Q + E K + +L+
Sbjct: 5330 YLLNPDV---EVDTQLQELKSLLSEVTTHRQAVEKMAEQQQNKYLGLYT-ILPSELSLHL 5385
Query: 1676 YDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWL-NDTENVLKNFTLQPT--LNEK 1732
+ + ++ D Q E G+ I + N+ +L + + K
Sbjct: 5386 AEVGLALVTVQDQIQAKEKETEHIKTLNQEFGQRIQGIANELNAILSKLKRKTNDIVQAK 5445
Query: 1733 KQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQD 1792
+Q+ L +L S C + LL+ L + ++ ++ + K Q+ I +
Sbjct: 5446 FEQKILGEELDS-CNIK-----LLE-LDASVQEFSEQ-----NIPLAK---QLANRIGKL 5490
Query: 1793 ATSHQQDLLQLKDKIESLHQPS---EQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCT 1849
HQQ + Q + + L Q + E+ + L I +++A + +
Sbjct: 5491 TALHQQTIRQAEYRATKLSQATSHLEEYNEMLEFIL----KWIEKANILVHGSITWNSSS 5546
Query: 1850 NL-DDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSV 1908
+L D + Y+ +L+E + D+E ++++ E L + + + ++ L L L +
Sbjct: 5547 HLRDQFKAYQTMLEESAEIHGDLEAMSERIEYLASVYSTEGMSQQVLELGRRTEELQQVI 5606
Query: 1909 QGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWN 1968
+ + ++ D +F + ++ L +A AT+ + +KE+ + + +
Sbjct: 5607 KVRLPNLQDAAKDMKKFEVELRALQTALEQAQATLTSPELGRLSLKEQLSHRQHLLSEME 5666
Query: 1969 SFRETLAQMTAWLDSVEKNIKQEIATPWTTTQXXXXXXXXXXXXXXXXXXGVGDHEAFVD 2028
S + + + ++ I +E+ T + V
Sbjct: 5667 SLKPKVHAVQVCQSALR--IPEEVVTSLPICHSALQLQEEASRLQHTAIQQCNIMQEAVV 5724
Query: 2029 KYEECSQKLAQ----VEAKYAKLIEPETSYEELQKRQGQLT 2065
+YE+ Q++ +E+ + ++ + + +Q+ Q Q++
Sbjct: 5725 QYEQYEQEMKHLQQMIESAHREIQDKPIATSNIQELQNQIS 5765
|
|
| UNIPROTKB|Q8NF91 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1927152 Syne1 "spectrin repeat containing, nuclear envelope 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E7ENN3 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-4172 syne1a "spectrin repeat containing, nuclear envelope 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PEL9 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PER7 SYNE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-071218-4 syne1b "spectrin repeat containing, nuclear envelope 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2174 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-04 | |
| cd00176 | 213 | cd00176, SPEC, Spectrin repeats, found in several | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| cd00176 | 213 | cd00176, SPEC, Spectrin repeats, found in several | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-11
Identities = 117/800 (14%), Positives = 297/800 (37%), Gaps = 132/800 (16%)
Query: 732 LERSKHIVDDIEKKKDDLKPIQKEAQ----------QLSEWDSSIVPKVSDLETRWAAVK 781
L+R + I++++E++ LK ++++A+ +L E + ++ L R ++
Sbjct: 188 LDRLEDILNELERQ---LKSLERQAEKAERYKELKAELRELELAL------LVLRLEELR 238
Query: 782 SAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHE 841
+ +L + +Q+ E+ L ++ L ++ ++ +E++Q
Sbjct: 239 EELEELQEELKEAEEELEELTAELQELEEKLEELR--------LEVSELEEEIEELQK-- 288
Query: 842 KLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPD 901
+ + N + E+ + +L ++ Q++ E
Sbjct: 289 ----ELYALANEISRLEQQKQILRERLANLE----RQLEELEAQLEELES---------- 330
Query: 902 NKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAK 961
K+D L +E +++++ + L L +E E ++E +E++
Sbjct: 331 -----------------KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
Query: 962 LKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLT 1021
L+ELE +E L LQ ++ L + + +
Sbjct: 374 LEELEEQLETLRSKVAQLELQIASLN-NEIERLEARLER--LEDRRERLQQEIEELLKKL 430
Query: 1022 VNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVST 1081
+ +Q +L +E+ + ++++ L+ ++EEA+ L AE +LA+ +
Sbjct: 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ-LQA 489
Query: 1082 QAEDISEALTVYQKLLDEINSWKNSQSDEDLVH--LADSIKP-------LDEVV-ERIEN 1131
+ + + + + + + +QS + L++ I ++ + R++
Sbjct: 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQA 549
Query: 1132 HAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQE 1191
V L + + V F+ + + E+ GN + + I+ + + D+ +
Sbjct: 550 VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
Query: 1192 YEA-----------------ILATA--------------SDKGDQLSSDGTISDRNEITE 1220
++ L A + GD + G I+ + T
Sbjct: 610 FDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN 669
Query: 1221 Q-LQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSR-LH 1278
+ R++++ L + +E+L ++ + +L ELEE+ E L + SR +
Sbjct: 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
Query: 1279 NLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDK 1338
LRK + +L + E+ +L EL E+ + E ++ L E + EL+
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 1339 QRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANE-HEAYKQAYNEAYDWLRKAKLGA 1397
Q +++ + K + EA+D+ + +E R+
Sbjct: 790 Q------------IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
Query: 1398 QANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEI 1457
+ D ++ ++ ++ I+ + + E ++LI++ + +L + ++ + +
Sbjct: 838 RRLEDL---EEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-----RASLEEAL 889
Query: 1458 NQITLDWTNLQNTLQDIDKH 1477
+ + L L++++
Sbjct: 890 ALLRSELEELSEELRELESK 909
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2174 | |||
| KOG0517|consensus | 2473 | 100.0 | ||
| KOG0517|consensus | 2473 | 100.0 | ||
| KOG0040|consensus | 2399 | 100.0 | ||
| KOG0040|consensus | 2399 | 100.0 | ||
| cd00176 | 213 | SPEC Spectrin repeats, found in several proteins i | 99.6 | |
| cd00176 | 213 | SPEC Spectrin repeats, found in several proteins i | 99.51 | |
| KOG4286|consensus | 966 | 99.24 | ||
| KOG4286|consensus | 966 | 99.22 | ||
| PF00435 | 105 | Spectrin: Spectrin repeat; InterPro: IPR002017 Spe | 98.84 | |
| PF00435 | 105 | Spectrin: Spectrin repeat; InterPro: IPR002017 Spe | 98.81 | |
| smart00150 | 101 | SPEC Spectrin repeats. | 98.79 | |
| smart00150 | 101 | SPEC Spectrin repeats. | 98.76 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.48 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.4 | |
| KOG4674|consensus | 1822 | 98.08 | ||
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.02 | |
| KOG0994|consensus | 1758 | 97.88 | ||
| KOG0161|consensus | 1930 | 97.84 | ||
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.75 | |
| KOG0994|consensus | 1758 | 97.61 | ||
| KOG0161|consensus | 1930 | 97.34 | ||
| KOG4674|consensus | 1822 | 97.31 | ||
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 96.83 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 96.63 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.96 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 95.84 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 95.76 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 94.3 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 94.2 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 93.97 | |
| PF13514 | 1111 | AAA_27: AAA domain | 93.89 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 93.88 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 93.66 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 93.64 | |
| PF13514 | 1111 | AAA_27: AAA domain | 93.52 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 93.13 | |
| KOG4240|consensus | 1025 | 93.08 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 92.05 | |
| KOG4240|consensus | 1025 | 90.58 | ||
| PF08580 | 683 | KAR9: Yeast cortical protein KAR9; InterPro: IPR01 | 90.54 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 90.45 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 90.07 | |
| KOG0996|consensus | 1293 | 88.78 | ||
| KOG0971|consensus | 1243 | 88.3 | ||
| KOG0933|consensus | 1174 | 87.46 | ||
| COG0497 | 557 | RecN ATPase involved in DNA repair [DNA replicatio | 83.89 | |
| KOG4673|consensus | 961 | 82.99 | ||
| PF08580 | 683 | KAR9: Yeast cortical protein KAR9; InterPro: IPR01 | 81.73 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 81.02 |
| >KOG0517|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-122 Score=1144.87 Aligned_cols=1762 Identities=14% Similarity=0.185 Sum_probs=1487.5
Q ss_pred ccccCCccchhHhHHHHHHhhHHHHHHhHhhhHhhhhhHHHHHhHHHHHHhHHHhhhhhcCCchhhhh---HHHHHHHHH
Q psy4474 20 GLVYDPKPIVDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVYVKTDDWLTGLEKDLDTLKNTTDVEAK---NSLLQKLLT 96 (2174)
Q Consensus 20 ~~i~~~~~~l~~~y~~L~~~~~~r~~~L~~~~~~~q~f~~~~~e~~~Wl~e~e~~l~~~~~~~~l~~~---~~~~~~l~~ 96 (2174)
.+|++|+.+|..+|++|+.+|..|+.+|++++..|+||.+ |++.++||.++++++.+...|+||.+. ++||++|+.
T Consensus 599 ~vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d-~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~ 677 (2473)
T KOG0517|consen 599 QVIQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWD-VEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALED 677 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999997777 999999999999999999999996666 457777777
Q ss_pred hhhhhhhhhhhhhccccccccccccccchHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCCcchhhhHHHH
Q psy4474 97 EKDQAGHKLTYLTSSGEKLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKA 176 (2174)
Q Consensus 97 e~~~~~~~l~~l~~~g~~l~~~~~~~~~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~~~~~~~i~~~ 176 (2174)
|+..+.+.+..+...|+.|+++. ||..+.|..+
T Consensus 678 E~~~~~a~~~~~~~~G~~Lvae~-----------------------------------------------~pg~~~i~~R 710 (2473)
T KOG0517|consen 678 EMRGRDAHLKQMIREGEELVAEG-----------------------------------------------HPGSDQIQER 710 (2473)
T ss_pred HHhcchhHHHHHHHHHHHHHhcC-----------------------------------------------CCCCCcHHHH
Confidence 77766666666666666665554 4556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHHHH
Q psy4474 177 IVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLK 256 (2174)
Q Consensus 177 ~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~WL~ 256 (2174)
+..+..+|+.|...+..|+.+|++|..+|| |+.+++++.+||.
T Consensus 711 ~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Q-------------------------------------ffaDAdd~~sWl~ 753 (2473)
T KOG0517|consen 711 AAEIREQWQRLEALVAGRGRRLQEARELYQ-------------------------------------FFADADDAESWLR 753 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HhccHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999
Q ss_pred HHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHH------HHHHHHHHHHHHHHHHH
Q psy4474 257 VTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQS------KQQLATITTRHGNVLKR 330 (2174)
Q Consensus 257 e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~------~~~~~~l~~r~~~L~~~ 330 (2174)
++-..+++ .++|.|...++.++++|..|..+|.+|.+.|..|..++..|....++. ..++..|++.|..|..+
T Consensus 754 d~~rlvss-~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e~p~V~~~~~R~~~i~q~Y~El~~l 832 (2473)
T KOG0517|consen 754 DALRLVSS-EDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPEGPEVRQPLQRQDTISQDYEELQEL 832 (2473)
T ss_pred HHHHhccc-hhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 99987776 568899999999999999999999999999999999999998866432 34899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHh--hhhh
Q psy4474 331 AQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALK--NNVL 408 (2174)
Q Consensus 331 ~~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~--~~~l 408 (2174)
+.-|...|++++..+. |...|++++.||.+++..|.++. ++.+++.+.....+++.|+.+|.....++..++ ...+
T Consensus 833 A~lRrq~L~dalaLy~-~~se~d~~ElWi~Eke~~L~~m~-~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL 910 (2473)
T KOG0517|consen 833 AQLRRQRLEDALALYG-FYSECDACELWIKEKEKWLATMS-PPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQL 910 (2473)
T ss_pred HHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhccC-CCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999998766 55589999999999999999763 346788899999999999999999988888888 4667
Q ss_pred hccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--CCCcHHH
Q psy4474 409 ESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIG--DCTNLDD 486 (2174)
Q Consensus 409 ~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~--~~~~~~~ 486 (2174)
...+|++.+.|..+.+.|+.+|..|...+..|...|+.+... ..|...|.+...||.++...+.+.+..+ ...+.+.
T Consensus 911 ~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V-~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~al 989 (2473)
T KOG0517|consen 911 LEVGHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALRV-ETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMAL 989 (2473)
T ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHH
Confidence 788999999999999999999999999999999999999865 5899999999999999998888754332 3456788
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy4474 487 LEKYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEE 564 (2174)
Q Consensus 487 l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 564 (2174)
..++..++.++...+++|..|...+..+....|. ..|..++..+...|..|...+.++..++++. ...+.|++++++
T Consensus 990 qrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea-~~lQ~Fl~dld~ 1068 (2473)
T KOG0517|consen 990 QRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEA-GGLQRFLRDLDD 1068 (2473)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8899999999999999999999999998877655 5588999999999999999999999999976 467799999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHhccccChhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q psy4474 565 VEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDR 644 (2174)
Q Consensus 565 l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~el~~~~~~l~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~~w~~ 644 (2174)
|..||..++..+.+.+.|.|+.+++.+|.+|.++..+|..++..+..+...|..+......|..-.+.+++..+...|..
T Consensus 1069 f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~e 1148 (2473)
T KOG0517|consen 1069 FQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEE 1148 (2473)
T ss_pred HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999888754445566799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHHHHhhh
Q psy4474 645 LNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNI 724 (2174)
Q Consensus 645 L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 724 (2174)
|...+..|+..|.+++. ++.|.+..+....-+.+.+..|.-... |.++
T Consensus 1149 L~~mWe~Rq~~L~Q~l~-lQ~F~Rda~q~ea~l~~qE~~L~~d~l-p~sl------------------------------ 1196 (2473)
T KOG0517|consen 1149 LHRMWENRQKWLSQGLD-LQLFLRDARQAEATLSNQEAFLSHDNL-PDSL------------------------------ 1196 (2473)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHhcccc-cccH------------------------------
Confidence 99999999999999997 589999999999999999999975533 3344
Q ss_pred HhHHHHHHHHHHHHHHHHHHchhChHHHHHHHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHhHhH
Q psy4474 725 RSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEW----DSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSS 800 (2174)
Q Consensus 725 ~~~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~L~~~----~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l~~~~~ 800 (2174)
..+++++++|..|...|..+.+.+..+...|+.|+.. .+.|.++...+..||..+...+..+..+|..++ .++.
T Consensus 1197 -e~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~sl-elQ~ 1274 (2473)
T KOG0517|consen 1197 -EEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSL-ELQE 1274 (2473)
T ss_pred -HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5788999999999999999999999999999999996 468889999999999999999999999999987 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhchH
Q psy4474 801 YQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQ 880 (2174)
Q Consensus 801 ~~~~l~~l~~wl~e~~~~L~~~~~~~~~~~~~~~~~~~~~q~~~~e~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 880 (2174)
|..++.+|..||.+. .|++...+|... ..+...+.+|+ .|...+.....||......
T Consensus 1275 flqd~~EL~~Wi~EK--~l~a~Desy~~~-~nl~~k~~kHq-------AFeaELaank~~l~~i~~e------------- 1331 (2473)
T KOG0517|consen 1275 FLQDCDELKLWIEEK--MLMAQDESYRDA-RNLHSKWLKHQ-------AFEAELAANKEWLEKIEKE------------- 1331 (2473)
T ss_pred HHHHHHHHHHHHHHH--hhhccccchhhh-hHHHHHHHHHH-------HHHHHHHhChHHHHHHHHH-------------
Confidence 999999999999985 677766655432 23334444444 5555555566666554311
Q ss_pred HhHHHHHHHHHhhhhhhcCcCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q psy4474 881 QTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEA 960 (2174)
Q Consensus 881 ~~l~~i~~~~~~~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~ 960 (2174)
|..|... .|.....|..++..|+.+|.+|......++.+|.++- ....|.+.+.++..
T Consensus 1332 --------------------G~~L~~e-kpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~-~q~~~~qs~~D~~~ 1389 (2473)
T KOG0517|consen 1332 --------------------GQELVSE-KPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQAN-RQELLLQSLADAKK 1389 (2473)
T ss_pred --------------------HHHHHhc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 2212111 3567788999999999999999999999999999995 57889999999999
Q ss_pred HHHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhhccChhchhhHHHHHHHHHHHHHHHHHHH
Q psy4474 961 KLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTI 1040 (2174)
Q Consensus 961 WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~ 1040 (2174)
||.+.+..+.|.++|.|+.++..+++|++.++.++..+...|..|...+..|...++++..|......+..||..|+.++
T Consensus 1390 ~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~v~~Rf~~L~~Pl 1469 (2473)
T KOG0517|consen 1390 KLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLAVLERFEDLLGPL 1469 (2473)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999997777788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhh
Q psy4474 1041 EDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIK 1120 (2174)
Q Consensus 1041 ~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~~~~~~l~~~~~ 1120 (2174)
..|+..|+.+.. +++|..+++....|+.+.- |.+
T Consensus 1470 ~~R~~~Le~S~e-~hQf~~dvddE~~WV~Erl-----P~A---------------------------------------- 1503 (2473)
T KOG0517|consen 1470 QERRKQLEASKE-LHQFVRDVDDELLWVAERL-----PLA---------------------------------------- 1503 (2473)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhHHHHHHHhhC-----ccC----------------------------------------
Confidence 999999998755 6789999999999998865 332
Q ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4474 1121 PLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATAS 1200 (2174)
Q Consensus 1121 ~l~~~~~~~~~~~~~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~ 1200 (2174)
.-.++|.++..++.+.++++.|..+|.+|++.|+.+.
T Consensus 1504 -------------------------------------------~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl 1540 (2473)
T KOG0517|consen 1504 -------------------------------------------SSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVL 1540 (2473)
T ss_pred -------------------------------------------CchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHH
Confidence 1246888999999999999999999999999999999
Q ss_pred hhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhhhcc
Q psy4474 1201 DKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNL 1280 (2174)
Q Consensus 1201 ~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~~~~~~~ 1280 (2174)
..|+.|+..++|. ++.|...+..|+..|..|...++.+...+.... +.++|.-++.++..|+.+.+..+.+ .+++.+
T Consensus 1541 ~~gq~Li~~~h~~-a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~-kaQQY~fDaaE~EaWm~Eqel~m~s-ee~gkD 1617 (2473)
T KOG0517|consen 1541 ERGQSLIDSGHPE-AEAIEEKLQELESAWQELKEACELRRQRLDEAV-KAQQYYFDAAEAEAWMGEQELYMMS-EEYGKD 1617 (2473)
T ss_pred HHhHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhhhHHHHhh-hhcccc
Confidence 9999999999885 688999999999999999999999988888877 5899999999999999998877765 478888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhcchhhhhhccchhhhhhHHHHHHhhhhhchhHHhHHHHHH
Q psy4474 1281 RKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKK 1360 (2174)
Q Consensus 1281 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~w~~L~~ 1360 (2174)
-.+.-.+.++|..+...+..+...++.+-.... . +.....| ..+.+..+-..|...|..|.+
T Consensus 1618 E~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~-----------~---lv~~~hP----~~eri~~rQ~qldkly~~Lk~ 1679 (2473)
T KOG0517|consen 1618 EDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQ-----------A---LVEANHP----ESERISRRQSQLDKLYAGLKD 1679 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H---HhcCCCC----hHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777766555444222111 1 1111111 223455555566789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcch-hhhhhHHHHHHHHH
Q psy4474 1361 NIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLP-EGQKLIDKTVALKN 1439 (2174)
Q Consensus 1361 ~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~-~~~~~v~~l~~~~~ 1439 (2174)
.+.+|..+|++++.++ .|..++++|..||.+.+... .....|.|++.|.-+-.+|..|..++. .++.+|.+++.+++
T Consensus 1680 LA~eRr~~Lee~l~L~-el~RE~dDLeqWIae~e~vA-gS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~ 1757 (2473)
T KOG0517|consen 1680 LAEERRRRLEETLRLY-ELSREVDDLEQWIAEKEVVA-GSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLAD 1757 (2473)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-cChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999998766 68999999999999977665 456889999999999999999999998 88999999999999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchH
Q psy4474 1440 NVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLD 1519 (2174)
Q Consensus 1440 ~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~ 1519 (2174)
.|+..+|| .++.|...-+.|++.|..|.+.+..|.+.|..+.. ++.|+.++.++..||.++-..|+.+-..+..+...
T Consensus 1758 ~LI~~ghs-~a~tvaewkd~LneaW~~LlELi~tR~q~Laas~e-lhrf~~D~~E~l~riqeK~~~lp~~lgRD~~s~~a 1835 (2473)
T KOG0517|consen 1758 ELIERGHS-AAATVAEWKDGLNEAWADLLELIDTRGQKLAASRE-LHRFHRDAREVLGRIQEKQAALPDDLGRDLNSAEA 1835 (2473)
T ss_pred HHHhcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhCchhhCCCcchHHH
Confidence 99999987 47889999999999999999999999999999997 89999999999999999999999866556666667
Q ss_pred hHHHHHHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1520 DLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKA 1599 (2174)
Q Consensus 1520 ~l~k~~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~ 1599 (2174)
..++|.+|..||.+ -.++|..+.+.+..|...+.++.+..|..+-+.+..-|..|...+..|+.+|.++.+ ...
T Consensus 1836 l~R~H~~fe~dl~~-----l~~Qvqql~e~a~rLq~~YaG~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~D-l~r 1909 (2473)
T KOG0517|consen 1836 LQRKHEAFEHDLVA-----LEPQVQQLQEDAARLQKAYAGDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSD-LFR 1909 (2473)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 88999999999998 578899999999999888888899999999999999999999999999999999998 556
Q ss_pred HHHHHHHHHHHHHHH------hhhcCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchHHHHHHHH
Q psy4474 1600 MQDKISKLQSWLKQY------IDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLAN 1673 (2174)
Q Consensus 1600 f~~~~~~l~~wl~~~------e~~~~d~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~ 1673 (2174)
|...+.++..|+..+ ++.+.|+..+.-++..|+.+.++|++..+.+..+.+.|+.++.. .|+++++|++++..
T Consensus 1910 F~~~VRDllsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~-~hyas~EI~ekl~~ 1988 (2473)
T KOG0517|consen 1910 FFSMVRDLLSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSACIELGKSLLLR-KHYASEEIKEKLRA 1988 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHh-cccchHHHHHHHHH
Confidence 777999999999995 34678999999999999999999999999999999999999994 78999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHhhHHHHHhhhccccchHHHHH
Q psy4474 1674 LRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVA 1753 (2174)
Q Consensus 1674 l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1753 (2174)
|..+-+.+...|..|...|+..+ ++++|.+++..++.||...+.+|.+
T Consensus 1989 L~~~r~e~~~~W~~r~e~Lq~~l-ev~~F~RdA~~aeawl~aQep~L~S------------------------------- 2036 (2473)
T KOG0517|consen 1989 LQDRREELYEKWERRWEWLQQIL-EVHQFARDAKVAEAWLIAQEPYLRS------------------------------- 2036 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhHhhH-------------------------------
Confidence 99999999999999999999988 7999999999999999999999976
Q ss_pred HHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH-hhhcCCChHHHHHHHHHhhhHHHHH
Q psy4474 1754 TLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI-ESLHQPSEQSKQQLATITTRHGNVL 1832 (2174)
Q Consensus 1754 ~~~~wl~~~e~~l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~-~~l~~~~~~i~~~l~~l~~~~~~l~ 1832 (2174)
.++|.+++.|+.+|++|+.|++-+.+...++-.+...+ -.++. .......+.++.-.+.
T Consensus 2037 ----------------~elG~sVdeVE~lIkrHEaFeKs~~a~eERfsaLerltt~el~e----~r~~~~~~l~~~~r~k 2096 (2473)
T KOG0517|consen 2037 ----------------SELGSSVDEVEKLIKRHEAFEKSAAAQEERFSALERLTTLELIE----ARHRESTLLQRRMRVK 2096 (2473)
T ss_pred ----------------HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHhhhhh
Confidence 48999999999999999999999999999988776655 33321 2222224445555666
Q ss_pred HHHHHHHhhhhhccc-----------------------C----CcHHHHHHHHHhhHHHHHhhhhhHhhHHHHHHHHHHh
Q psy4474 1833 KRAQKKIEAEKDIGD-----------------------C----TNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELA 1885 (2174)
Q Consensus 1833 ~~~~~r~~~l~~~~~-----------------------~----~~~~~l~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~ 1885 (2174)
..+..|...|.+++. . .....+.+|+++..++..+.+.++.+-.+|. +..+.
T Consensus 2097 ~~~~~r~~~l~~a~~~asf~~~~~e~~~~~~~~~~~~~~v~~~~~~~~~~~~qa~~aevqa~~~~~~~i~~rg~-~~~~~ 2175 (2473)
T KOG0517|consen 2097 ELAESRGHALHDALLMASFTQWIEEKAKRQPPAPESSESVPLDEKAKTLQKHQAFEAEVQANAPVVQEIPRRGE-LAKSH 2175 (2473)
T ss_pred hHHhhhhhHHHHHHHhhhHHHHHhhhhcccCCCcccCCCCCcchhhHHHHhhcccccchhccchhhhhhhhhhh-HhhcC
Confidence 667777777776640 0 1236688999999999999999999999999 33333
Q ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHH
Q psy4474 1886 -AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQY 1964 (2174)
Q Consensus 1886 -~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~d~~~~~~~~~~~~~~~l~ 1964 (2174)
.++.|..++..+...|.++..++..|...|+++.... +|...++..++|+.+.+..+...| ++.+++.+-.+.
T Consensus 2176 ~~s~~~~~r~~~~~~~w~~l~~a~a~~~~~lEe~~~~l-ef~q~~~~~~awi~~ke~~~~~~d-----~Gkd~ehc~~l~ 2249 (2473)
T KOG0517|consen 2176 DRSEEIARRLQGLRKHWEDLRAAMALRGQELEEARDFL-EFGQRVDEAEAWIEEKEVKVGDGD-----LGKDLEHCLQLP 2249 (2473)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHhhhccccccccchh-----cchhHHHHHHHH
Confidence 7789999999999999999999999999999987754 599999999999999999888777 777777777777
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHhhhhhhcC--------------CCcchhHHHHHHHHHHHHHHHHhhhcCChhhHHHHH
Q psy4474 1965 LQWNSFRETLAQMTAWLDSVEKNIKQEIAT--------------PWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKY 2030 (2174)
Q Consensus 1965 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~--------------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~ 2030 (2174)
.+++.++.....-..-+..++.-...|.+. ..+.+..+...+ .+..+..+. ....|.+..
T Consensus 2250 ~~l~~~r~~~~v~~~~~~~i~~l~~kL~n~~~~p~~~~~~~r~~~~~~w~~~eG~L--~Rk~~~~A~----e~k~~nRsw 2323 (2473)
T KOG0517|consen 2250 RRLRETRSDSPVDDQCPQSINDLSLKLKNQATLPARTQEQDRSRLNSAWRQLEGFL--YRKHLLGAL----EIKASNRSW 2323 (2473)
T ss_pred hhhhcccCCCCCcccccchhhhhhhhhcccCCCCccccccccccCCcHHHHHHhHH--HHHHHHhhh----hhhhhcccH
Confidence 776665544221111111111111112111 011111122212 112222221 122567788
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHhcCCCCCCc-hhhhHHHHHHH
Q psy4474 2031 EECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHE-PLRVQMEKLQQ 2109 (2174)
Q Consensus 2031 ~~l~~wl~~~e~~l~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~~~~~~~-~i~~~~~~l~~ 2109 (2174)
..+..-|.+.+.-+ ..++|.|...++..+...-.+-......+..++.......-++. .|+++. -++.+.+++-+
T Consensus 2324 ~~vy~~i~e~el~f--ykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~l~--~~~gae~llq~k~ee~m~ 2399 (2473)
T KOG0517|consen 2324 DNVYCRIREKELGF--YKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFLLQ--LPPGAEHLLQAKDEEEME 2399 (2473)
T ss_pred HHHHHHHHhccchh--hcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhhhc--CCchHHHHHhhccHHHHH
Confidence 88888888876555 56799999999888888888888888888888888887777776 444444 45558899999
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHhhcCccccHHHHH
Q psy4474 2110 AVEALYDKITVTESLILSQVEAKYAKLIEPETSYEELQ 2147 (2174)
Q Consensus 2110 ~w~~L~~~~~~R~~~~~~~~~~f~~~~~e~~~~~~~~~ 2147 (2174)
.| |...+..|.+.. .|..++.|++.|.+-..
T Consensus 2400 sW--L~~~a~~~~~~l-----k~~~~~~e~~~~a~~~~ 2430 (2473)
T KOG0517|consen 2400 SW--LRALAVKRAEAL-----KLSDDVKELEVWANAVR 2430 (2473)
T ss_pred HH--HHHHHHHHHHHh-----hhhhhHHHhhhhHHHHH
Confidence 99 777777776433 78888888888866543
|
|
| >KOG0517|consensus | Back alignment and domain information |
|---|
| >KOG0040|consensus | Back alignment and domain information |
|---|
| >KOG0040|consensus | Back alignment and domain information |
|---|
| >cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >KOG4286|consensus | Back alignment and domain information |
|---|
| >KOG4286|consensus | Back alignment and domain information |
|---|
| >PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure | Back alignment and domain information |
|---|
| >PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure | Back alignment and domain information |
|---|
| >smart00150 SPEC Spectrin repeats | Back alignment and domain information |
|---|
| >smart00150 SPEC Spectrin repeats | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4240|consensus | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4240|consensus | Back alignment and domain information |
|---|
| >PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules [] | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules [] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 2e-21
Identities = 101/630 (16%), Positives = 207/630 (32%), Gaps = 131/630 (20%)
Query: 440 IDKHHAKCLSIWNDFLSS-KNTLE-KWIEGFQKKIEAEKDIGDCTNL-DDLEKYKALLQE 496
+H + I + F + + + K ++ K I ++++I D + L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 497 VISHNSDM------ETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEK 550
++S +M E L + LM PI+ E + + + L + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 551 NLSDQTEFLAKKEEVEAWLHKAHA----TVQECAGNGSKNVL----------KERLDT-- 594
L ++ L + + G+G K + + ++D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKI 184
Query: 595 --VNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKST 652
+N+ PE ++ +LQ + +D + + D + L R LKS
Sbjct: 185 FWLNLKNCNSPET--VLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 653 STQLKSYIARWNELDDLYNR-----FNM---------------WLSGVENK---LNEPSP 689
+ + L ++ N FN+ +LS L+ S
Sbjct: 242 PYE-NCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 690 VFTE---IDLNTKWQQYVNDELEWENHSQNTLQWLDNI---RSDMKTLLERSKHIVDD-- 741
T L K+ +L E + N + L I D + KH+ D
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 742 ---IEKKKDDLKP--IQKEAQQLS--EWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSE 794
IE + L+P +K +LS + I + L W V + + ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDV---MVVVNK 410
Query: 795 IAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAV 854
+ +YS EK + + + S+Y+ + + + H ++ Y+ +
Sbjct: 411 LHKYSL-------VEKQPKESTISI--P-SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 855 QDAE--KWLLQISFQLMAHNSLYINNRQQTLEQIQHHEK--LLQDVILS---PDNKL-AP 906
D +L Q + + H+ L+ I+H E+ L + V L + K+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH----------LKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 907 CFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELE 966
+ I + + +L+ I D +L+ +F + +E L
Sbjct: 511 STAWNASGSILNTLQQLKF----YKPYICDNDPKYERLVNAILDF---LPKIEENL---- 559
Query: 967 VAVEGDVKTNNVLMLQ-ELLNKYAQLNEEA 995
+ + +L+ L+ + + EEA
Sbjct: 560 ------ICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326 | Back alignment and structure |
|---|
| >3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Length = 323 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476 | Back alignment and structure |
|---|
| >3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Length = 450 | Back alignment and structure |
|---|
| >1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 | Back alignment and structure |
|---|
| >1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
| >1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 | Back alignment and structure |
|---|
| >1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214 | Back alignment and structure |
|---|
| >3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2174 | |||
| 1hci_A | 476 | Alpha-actinin 2; triple-helix coiled coil, contrac | 99.96 | |
| 3edv_A | 323 | Spectrin beta chain, brain 1; spectrin repeat, coi | 99.95 | |
| 3edv_A | 323 | Spectrin beta chain, brain 1; spectrin repeat, coi | 99.95 | |
| 1u4q_A | 322 | Spectrin alpha chain, brain; alpha spectrin, three | 99.95 | |
| 1hci_A | 476 | Alpha-actinin 2; triple-helix coiled coil, contrac | 99.94 | |
| 1u4q_A | 322 | Spectrin alpha chain, brain; alpha spectrin, three | 99.94 | |
| 3kbt_A | 326 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.94 | |
| 3kbt_A | 326 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.93 | |
| 1sjj_A | 863 | Actinin; 3-helix bundle, calponin homology domain, | 99.88 | |
| 3r6n_A | 450 | Desmoplakin; spectrin repeat, SH3 domain, cell adh | 99.88 | |
| 3r6n_A | 450 | Desmoplakin; spectrin repeat, SH3 domain, cell adh | 99.88 | |
| 1sjj_A | 863 | Actinin; 3-helix bundle, calponin homology domain, | 99.87 | |
| 3edu_A | 218 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.8 | |
| 1s35_A | 214 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.8 | |
| 1u5p_A | 216 | Spectrin alpha chain, brain; alpha spectrin, two r | 99.79 | |
| 1cun_A | 213 | Protein (alpha spectrin); two repeats of spectrin, | 99.79 | |
| 1u5p_A | 216 | Spectrin alpha chain, brain; alpha spectrin, two r | 99.78 | |
| 1cun_A | 213 | Protein (alpha spectrin); two repeats of spectrin, | 99.77 | |
| 3edu_A | 218 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.75 | |
| 1s35_A | 214 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.74 | |
| 3fb2_A | 218 | Spectrin alpha chain, brain spectrin; non-erythroi | 99.73 | |
| 1quu_A | 250 | Human skeletal muscle alpha-actinin 2; triple-heli | 99.73 | |
| 1quu_A | 250 | Human skeletal muscle alpha-actinin 2; triple-heli | 99.72 | |
| 3pdy_A | 210 | Plectin; cytoskeleton, plakin, intermediate filame | 99.68 | |
| 3fb2_A | 218 | Spectrin alpha chain, brain spectrin; non-erythroi | 99.67 | |
| 2iak_A | 224 | Bullous pemphigoid antigen 1, isoform 5; triple he | 99.65 | |
| 3pdy_A | 210 | Plectin; cytoskeleton, plakin, intermediate filame | 99.65 | |
| 2iak_A | 224 | Bullous pemphigoid antigen 1, isoform 5; triple he | 99.63 | |
| 3pe0_A | 283 | Plectin; cytoskeleton, plakin, spectrin repeat, SH | 99.6 | |
| 3lbx_B | 185 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.52 | |
| 3lbx_B | 185 | Beta-I spectrin, spectrin beta chain, erythrocyte; | 99.51 | |
| 3lbx_A | 161 | Spectrin alpha chain, erythrocyte; tetramer, compl | 99.48 | |
| 3lbx_A | 161 | Spectrin alpha chain, erythrocyte; tetramer, compl | 99.45 | |
| 3pe0_A | 283 | Plectin; cytoskeleton, plakin, spectrin repeat, SH | 99.45 | |
| 3f31_A | 149 | Spectrin alpha chain, brain; LONE helix followed b | 99.39 | |
| 3f31_A | 149 | Spectrin alpha chain, brain; LONE helix followed b | 99.38 | |
| 3uun_A | 119 | Dystrophin; triple helical, cell structure and sta | 99.28 | |
| 3uul_A | 118 | Utrophin; spectrin repeat, structural protein, cyt | 99.28 | |
| 3uul_A | 118 | Utrophin; spectrin repeat, structural protein, cyt | 99.14 | |
| 3uun_A | 119 | Dystrophin; triple helical, cell structure and sta | 99.11 | |
| 2spc_A | 107 | Spectrin; cytoskeleton; 1.80A {Drosophila melanoga | 98.95 | |
| 2odv_A | 235 | Plectin 1, HD1; plakin domain, spectrin repeat, cy | 98.86 | |
| 1g8x_A | 1010 | Myosin II heavy chain fused to alpha-actinin 3; mo | 98.83 | |
| 2odv_A | 235 | Plectin 1, HD1; plakin domain, spectrin repeat, cy | 98.8 | |
| 1g8x_A | 1010 | Myosin II heavy chain fused to alpha-actinin 3; mo | 98.8 | |
| 2spc_A | 107 | Spectrin; cytoskeleton; 1.80A {Drosophila melanoga | 98.79 | |
| 2ycu_A | 995 | Non muscle myosin 2C, alpha-actinin; motor protein | 98.49 | |
| 2ycu_A | 995 | Non muscle myosin 2C, alpha-actinin; motor protein | 98.46 | |
| 1wlx_A | 129 | Alpha-actinin 4; three-helix bundle, protein bindi | 97.56 | |
| 1wlx_A | 129 | Alpha-actinin 4; three-helix bundle, protein bindi | 97.28 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 89.08 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 86.35 |
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=297.56 Aligned_cols=424 Identities=13% Similarity=0.186 Sum_probs=336.3
Q ss_pred HhhhhhHHHHHhHHHHHHhHHHhhhhhcCCchhhhhHHHHHHHHHhhhhhh-hhhh-------hhhcccccccccccccc
Q psy4474 52 YDHKLYNDVYVKTDDWLTGLEKDLDTLKNTTDVEAKNSLLQKLLTEKDQAG-HKLT-------YLTSSGEKLYLDTAAKG 123 (2174)
Q Consensus 52 ~~~q~f~~~~~e~~~Wl~e~e~~l~~~~~~~~l~~~~~~~~~l~~e~~~~~-~~l~-------~l~~~g~~l~~~~~~~~ 123 (2174)
.....|...+.++..||.+++..+.+...|.++.....++.+|...+.... +++. .+...|.+|.....+.-
T Consensus 11 ~~~~~y~~~~~~ll~Wi~~~~~~l~~~~~~~~l~~~~~~l~~f~~~~~~~~p~~~~ek~~le~~~~~~~~~l~~~~~~~~ 90 (476)
T 1hci_A 11 RLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAF 90 (476)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHHTHHHHHHHHHHTTTHHHHTTTTTTTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 345778999999999999999999998888888888888888877666554 4443 34444555433322111
Q ss_pred chHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 124 REVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEESLD 203 (2174)
Q Consensus 124 ~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~ 203 (2174)
.+.+...+. +...+-..+..+...|..+...+..|..+|+.+
T Consensus 91 ~~~~~~~~~------------------------------------~i~~~w~~L~~l~~~r~~~l~~~~~R~~~Le~~-- 132 (476)
T 1hci_A 91 MPSEGKMVS------------------------------------DIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL-- 132 (476)
T ss_dssp CCCGGGCSS------------------------------------SHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 011111111 112222345555555666666666677777665
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHH
Q psy4474 204 IFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYR 283 (2174)
Q Consensus 204 ~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~ 283 (2174)
.. .|...++.+..||.+++..+.+.++.|.|++.++.++++|+
T Consensus 133 ~~-------------------------------------~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~ 175 (476)
T 1hci_A 133 AE-------------------------------------KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHE 175 (476)
T ss_dssp HH-------------------------------------HHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHH
T ss_pred HH-------------------------------------HHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHH
Confidence 33 49999999999999999999875555999999999999999
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q psy4474 284 TIYQDATSHQQDLLQLKDKIESLHQPSEQS----KQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQ-------AYTKAV 352 (2174)
Q Consensus 284 ~l~~el~~~~~~v~~l~~~~~~L~~~~~~~----~~~~~~l~~r~~~L~~~~~~r~~~Le~~~~~~~-------~f~~~~ 352 (2174)
.|+.+|.++.+.|..|...|..|+..+++. ..++..|+.+|..|+..+..|..+|+.++..++ .|...+
T Consensus 176 ~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~~~~~~~~e~l~~~f~~~a 255 (476)
T 1hci_A 176 AFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 255 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876543 567999999999999999999999999988776 899999
Q ss_pred HHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHH---h---hhhhhccCc---cccccHHHHH
Q psy4474 353 LDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVAL---K---NNVLESTGP---IGKENINQEI 423 (2174)
Q Consensus 353 ~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l---~---~~~l~~~~~---~~~~~i~~~~ 423 (2174)
.++..||.++...+.+.. ++.|+.+++.++++|+.|..++......+..+ . ..++...++ .+.+.|...+
T Consensus 256 ~~~~~Wl~~~~~~l~~~~-~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~ 334 (476)
T 1hci_A 256 APFNNWMEGAMEDLQDMF-IVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTM 334 (476)
T ss_dssp HHHHHHHHHHHHHTTCCC-CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTCSSCH
T ss_pred HHHHHHHHHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhccH
Confidence 999999999999998864 68899999999999999999999887665544 2 233333333 2567788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcHHHHHHHHHHHHH
Q psy4474 424 NQITLDWTNLQNTLQVIDKHHAKCLSI-------WNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDLEKYKALLQE 496 (2174)
Q Consensus 424 ~~l~~~w~~L~~~~~~r~~~Le~~~~~-------~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~k~l~~e 496 (2174)
..|..+|+.|...+..|...|+.++.. ++.|...++.+..||.+++..+.+.+.+....+..++.+|+.|..+
T Consensus 335 ~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~~~~~~~~~le~~l~~~~~~~~e 414 (476)
T 1hci_A 335 DELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHN 414 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999874 3689999999999999999999875454455678899999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 497 VISHNSDMETLNDKCEALMELAA--HSPIREETLRLQALYAALVTSVQGLVSQVEKN 551 (2174)
Q Consensus 497 i~~~~~~l~~l~~~~~~L~~~~~--~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~ 551 (2174)
|..+.+.+..+...|..+..... .+.....+..+..+|..|...+..+...|+..
T Consensus 415 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~~~~~lE~~ 471 (476)
T 1hci_A 415 IINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQ 471 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876431 12222577889999999999999999999864
|
| >3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A | Back alignment and structure |
|---|
| >3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 | Back alignment and structure |
|---|
| >3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 | Back alignment and structure |
|---|
| >3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A | Back alignment and structure |
|---|
| >1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A | Back alignment and structure |
|---|
| >1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A | Back alignment and structure |
|---|
| >3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A | Back alignment and structure |
|---|
| >1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 | Back alignment and structure |
|---|
| >3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
| >3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
| >2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A | Back alignment and structure |
|---|
| >3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A | Back alignment and structure |
|---|
| >3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 | Back alignment and structure |
|---|
| >3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 | Back alignment and structure |
|---|
| >3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A | Back alignment and structure |
|---|
| >3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A | Back alignment and structure |
|---|
| >3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 | Back alignment and structure |
|---|
| >2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 | Back alignment and structure |
|---|
| >2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 | Back alignment and structure |
|---|
| >2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* | Back alignment and structure |
|---|
| >1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2174 | |||
| d1owaa_ | 156 | Spectrin alpha chain {Human (Homo sapiens) [TaxId: | 99.23 | |
| d1owaa_ | 156 | Spectrin alpha chain {Human (Homo sapiens) [TaxId: | 99.16 | |
| d1s35a2 | 105 | Spectrin beta chain {Human (Homo sapiens) [TaxId: | 99.16 | |
| d1quua1 | 124 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1cuna2 | 104 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 99.12 | |
| d1u5pa1 | 110 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 99.11 | |
| d1s35a1 | 106 | Spectrin beta chain {Human (Homo sapiens) [TaxId: | 99.1 | |
| d1cuna2 | 104 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 99.06 | |
| d1quua1 | 124 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d1u5pa1 | 110 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 99.03 | |
| d1s35a2 | 105 | Spectrin beta chain {Human (Homo sapiens) [TaxId: | 99.02 | |
| d1s35a1 | 106 | Spectrin beta chain {Human (Homo sapiens) [TaxId: | 99.01 | |
| d1u5pa2 | 101 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 99.0 | |
| d1hcia4 | 114 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1quua2 | 124 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1u5pa2 | 101 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 98.93 | |
| d2spca_ | 107 | Spectrin alpha chain {Drosophila sp. [TaxId: 7242] | 98.9 | |
| d1quua2 | 124 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2spca_ | 107 | Spectrin alpha chain {Drosophila sp. [TaxId: 7242] | 98.81 | |
| d1hcia4 | 114 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1hcia1 | 125 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d1hcia1 | 125 | alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | 91.99 |
| >d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Spectrin repeat family: Spectrin repeat domain: Spectrin alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8.6e-12 Score=130.38 Aligned_cols=147 Identities=10% Similarity=0.144 Sum_probs=129.5
Q ss_pred hHHHHHHHhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchH
Q psy4474 152 RIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTE 231 (2174)
Q Consensus 152 ~~v~~l~~~~~~L~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~ 231 (2174)
|.+..+...|..+++ .+++|+.++..|+.+|+.|...+..|...|++++.+++
T Consensus 5 p~~~~~~~~g~~l~e--~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~~~~~------------------------- 57 (156)
T d1owaa_ 5 PKETVVESSGPKVLE--TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV------------------------- 57 (156)
T ss_dssp CCCCCTTSSSCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCHHHHH-------------------------
T ss_pred HHHHHHHHhhhHHhh--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 344455666777765 36789999999999999999999999999999988776
Q ss_pred HHhhhhhhchhhHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCh
Q psy4474 232 RELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSE 311 (2174)
Q Consensus 232 ~~l~~~l~~w~~f~~~~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~ 311 (2174)
|...++.+..||.+++..+.+. .+.|+..++.++++|+.|+.+|.++++.|..|...|..|+..+|
T Consensus 58 ------------F~~~~~~l~~Wl~e~e~~~~~~--~~~d~~~~~~~~~~h~~l~~ei~~~~~~~~~l~~~g~~L~~~~~ 123 (156)
T d1owaa_ 58 ------------FKRDADDLGKWIMEKVNILTDK--SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGH 123 (156)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHH--HHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred ------------HHHHHHHHHHHHHHHHHHhccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999888753 45788899999999999999999999999999999999999887
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 312 QS----KQQLATITTRHGNVLKRAQKFTEAYE 339 (2174)
Q Consensus 312 ~~----~~~~~~l~~r~~~L~~~~~~r~~~Le 339 (2174)
+. ...++.|+.+|..|+..+.+|..+|.
T Consensus 124 ~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~L~ 155 (156)
T d1owaa_ 124 SAHEETKAHIEELRHLWDLLLELTLEKGDQLL 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 65 57899999999999999999998873
|
| >d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} | Back information, alignment and structure |
|---|
| >d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} | Back information, alignment and structure |
|---|
| >d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|