Psyllid ID: psy4487

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MLTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccccEEEEEEccccHHHHccccccccEEEEEcccccccccHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEccccEEccccccEEEEEEEEcccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccccccccccccEEEEcccccccccEEEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHccccccEEEEEEEccccccccccccHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mltrnnsglrrqysqqettpyripssdsgvdmrhstarSRDEELRYYRgelegstgnegsgsiggkEKQAILDERIKKFLahplswkpsadgkyMIGHMIlrksgdrypsasstlgIKVIggklledgtrGAIIEKvkkgspadleghlLAGDQViewngrsmrgksfqDVEDIIAESRQEPQVELIVSrriqpkyaptlskdvyervrdkpsvlvtspgspdihsgrpgrpvpshhtdhhpitnssvggrIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAaslvprsngqprcpyakiyllpdr
Flexible Loop (DISEMBL)
mltrnnsglrrqysqqettpyripssdsgvdmrhstarsrdeelRYYRGelegstgnegsgsigGKEKQAILDERIKKFlahplswkpsadgKYMIGHMILRksgdrypsasstLGIKViggklledgtRGAIIEKVkkgspadleGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAEsrqepqvelivsrriqpkyaptlskdvyervrdkpsvlvtspgspdihsgrPGRPVPSHHTDHhpitnssvggrIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAAslvprsngqprcpyakiyllpdr
Low Complexity Region (SEG)
MLTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR
Disordered region (IsUnstruct)
**********************************************************************ILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGR************I**********ELIVSRRI*******************************************************VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL***
Disordered Region (DISOPRED)
**************************************************************************************************MILRK********SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR******************************************************************************************************************YAKIYLLPD*
Disordered Region (DISEMBL)
****************************************DEELRYYRGELEG*************EKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSV***********************TDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR
Disordered Region (DISPRO)
*********************************************************************AILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLS*D*Y**********************************************************RLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9JIS1	1555	Regulating synaptic membr	yes	N/A	0.936	0.189	0.341	9e-36
Q9EQZ7	1530	Regulating synaptic membr	yes	N/A	0.663	0.136	0.380	2e-35
Q9UQ26	1411	Regulating synaptic membr	yes	N/A	0.663	0.148	0.380	3e-35
Q22366	1563	Rab-3-interacting molecul	no	N/A	0.876	0.176	0.347	4e-34
Q99NE5	1463	Regulating synaptic membr	no	N/A	0.634	0.136	0.364	5e-33
Q9JIR4	1615	Regulating synaptic membr	no	N/A	0.634	0.123	0.364	7e-33
Q86UR5	1692	Regulating synaptic membr	no	N/A	0.634	0.118	0.360	5e-32
Q9QYX7	5068	Protein piccolo OS=Mus mu	no	N/A	0.688	0.042	0.275	6e-11
Q9PU36	5120	Protein piccolo (Fragment	no	N/A	0.688	0.042	0.276	4e-10
Q9JKS6	5085	Protein piccolo OS=Rattus	no	N/A	0.542	0.033	0.287	2e-09

>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus norvegicus GN=Rims2 PE=1 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 160/334 (47%), Gaps = 39/334 (11%)

Query: 2   LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEEL----RYYRG---ELEG- 53
           + RN+S    Q       P R   S  G  MR  +  S +EEL     Y      E+E  
Sbjct: 477 MLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query: 54  STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
           S G +G       E  +           HP++W+PS DG  +IG ++L K    G     
Sbjct: 537 SVGEKGDMEYSWLEHASWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
           + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct: 597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query: 171 VEDIIAESRQEPQVELIVSRRI--QPKYAPTLSKDVYERVR-------DKPSVLVTSPGS 221
           V +II ES+ EPQVEL+VSR I   P+   +    +            D+PS+ VTSP S
Sbjct: 657 VYNIILESKPEPQVELVVSRPIGDMPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMS 716

Query: 222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGT 281
           P +    P        +       +    R+Q+K + D         + H          
Sbjct: 717 PGMLRDVPQFLSGQLSSQSLSRRTTPFVPRVQIKLWFDK--------VGH---------- 758

Query: 282 LRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
            +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct: 759 -QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 791

Rab effector involved in exocytosis. May act as scaffold protein.
Rattus norvegicus (taxid: 10116)

>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus GN=Rims2 PE=1 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 51/260 (19%)

Query: 70  AILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPSASSTLGIKVIGGKLLE 126
             L+E       HP++W+PS DG  +IG ++L K    G     + + LG+KV+GGK+ E
Sbjct: 640 TTLNEEHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTE 699

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
            G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++V +II ES+ EPQVEL
Sbjct: 700 SGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 759

Query: 187 IVSRRIQPKYAPTLSKDVYERVR-----------DKPSVLVTSPGSPDIHSGRPGRPVPS 235
           +VSR I     P +    + ++            D+PS+ VTSP SP +      R VP 
Sbjct: 760 VVSRPI--GDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGML-----RDVPQ 812

Query: 236 HHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLV 295
                                +L SG L        S+K + D    +L+VT++ A  L 
Sbjct: 813 ---------------------FL-SGQL--------SIKLWFDKVGHQLIVTILGAKDLP 842

Query: 296 PRSNGQPRCPYAKIYLLPDR 315
            R +G+PR PY KIY LPDR
Sbjct: 843 SREDGRPRNPYVKIYFLPDR 862

Rab effector involved in exocytosis. May act as scaffold protein.

Mus musculus (taxid: 10090)

>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens GN=RIMS2 PE=1 SV=2

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 51/260 (19%)

Query: 70  AILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPSASSTLGIKVIGGKLLE 126
             L+E       HP++W+PS DG  +IG ++L K    G     + + LG+KV+GGK+ E
Sbjct: 631 TTLNEEHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTE 690

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
            G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++V +II ES+ EPQVEL
Sbjct: 691 SGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 750

Query: 187 IVSRRIQPKYAPTLSKDVYERVR-----------DKPSVLVTSPGSPDIHSGRPGRPVPS 235
           +VSR I     P +    + ++            D+PS+ VTSP SP +      R VP 
Sbjct: 751 VVSRPI--GDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGML-----RDVP- 802

Query: 236 HHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLV 295
                              +F   SG L        S+K + D    +L+VT++ A  L 
Sbjct: 803 -------------------QFL--SGQL--------SIKLWFDKVGHQLIVTILGAKDLP 833

Query: 296 PRSNGQPRCPYAKIYLLPDR 315
            R +G+PR PY KIY LPDR
Sbjct: 834 SREDGRPRNPYVKIYFLPDR 853

Rab effector involved in exocytosis. May act as scaffold protein.

Homo sapiens (taxid: 9606)

>sp|Q22366|RIM_CAEEL Rab-3-interacting molecule unc-10 OS=Caenorhabditis elegans GN=unc-10 PE=1 SV=2

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 155/317 (48%), Gaps = 41/317 (12%)

Query: 29  GVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKP 88
           G+DM+ +  R +   L   R +      + G+GSI G +   +L  RI+ FL+HP++W+P
Sbjct: 583 GLDMQANRRRDKSLSLSPSRND------HFGTGSISGGD---LLASRIRTFLSHPVTWQP 633

Query: 89  SADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGH 148
           SAD K +IGHMIL ++ +   +A+  LG+K++GG+  + G  GA I +VK GS AD  G 
Sbjct: 634 SADQKKLIGHMILHRTENS--AANGDLGLKIVGGRRTDTGKLGAFITQVKPGSVADTIGR 691

Query: 149 LLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR-IQP------KYAPT-L 200
           L  GD+V+EWNG+S++  +++ V D IA SR +  VELIVSR  I P         P+ +
Sbjct: 692 LRPGDEVVEWNGQSLQNATYEQVYDSIAASRYDTSVELIVSRSAIIPGGDDFLNLTPSQM 751

Query: 201 SKDVYERVRDK-PSVLVTSPGSP----DIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVK 255
           S   Y RV    PS       +P    DIH       +P   +   P  N+         
Sbjct: 752 SSSAYSRVPSAYPSQFQRQLPNPDLFLDIHPALQQLSLPHSQSAVFPHNNTLTSRNRSTS 811

Query: 256 FYLDSGTLRLVVTLIH-----------------SVKFYLDSGTLRLVVTLMCAASLVPRS 298
            Y  S    L V                      V F       +L V L+    L PRS
Sbjct: 812 SYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIEVSFVYSHHDRQLSVALVRGFDLPPRS 871

Query: 299 NGQPRCPYAKIYLLPDR 315
           +G PR PY KI+LLPDR
Sbjct: 872 DGTPRNPYVKIFLLPDR 888

Regulates the efficiency of a post-docking step of the release pathway. Acts after vesicle docking likely via regulating priming. May regulate the conformational changes in syntaxin. Binding of vesicles via rab-3[GTP] to Rim may signal the presence of a docked synaptic vesicle. Rim may then signal to unc-13 to change the conformation of syntaxin from the closed to the open state. Syntaxin could then engage synaptobrevin on the docked vesicle to form SNARE complexes and to prime the vesicle for release. Not required for the development or the structural organization of synapses.

Caenorhabditis elegans (taxid: 6239)

>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus GN=Rims1 PE=1 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 129/244 (52%), Gaps = 44/244 (18%)

Query: 81  AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
           +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct: 417 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 476

Query: 141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI-------- 192
           S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR I        
Sbjct: 477 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 536

Query: 193 -QPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGR 251
                  + S     +  ++PS+ V SP SP                           G 
Sbjct: 537 SSHPPLESSSSSFESQKMERPSISVISPTSP---------------------------GA 569

Query: 252 IQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
           ++    +  G L        SVK + D    +L+V ++ A  L PR +G+PR PY K+Y 
Sbjct: 570 LKDAPQVLPGQL--------SVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYF 621

Query: 312 LPDR 315
           LPDR
Sbjct: 622 LPDR 625

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus norvegicus GN=Rims1 PE=1 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 129/244 (52%), Gaps = 44/244 (18%)

Query: 81  AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
           +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct: 596 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 655

Query: 141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI-------- 192
           S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR I        
Sbjct: 656 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 715

Query: 193 -QPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGR 251
                  + S     +  ++PS+ V SP SP                           G 
Sbjct: 716 SSHPPLESSSSSFESQKMERPSISVISPTSP---------------------------GA 748

Query: 252 IQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
           ++    +  G L        SVK + D    +L+V ++ A  L PR +G+PR PY K+Y 
Sbjct: 749 LKDAPQVLPGQL--------SVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYF 800

Query: 312 LPDR 315
           LPDR
Sbjct: 801 LPDR 804

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Rattus norvegicus (taxid: 10116)

>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens GN=RIMS1 PE=1 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 128/244 (52%), Gaps = 44/244 (18%)

Query: 81  AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
           +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct: 582 SHPVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKG 641

Query: 141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI-------- 192
           S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR I        
Sbjct: 642 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 701

Query: 193 -QPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGR 251
                  + S     +  ++PS+ V SP SP                           G 
Sbjct: 702 SSHPPLESSSSSFESQKMERPSISVISPTSP---------------------------GA 734

Query: 252 IQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
           ++    +  G L        SVK + D    +L+V ++ A  L  R +G+PR PY K+Y 
Sbjct: 735 LKDAPQVLPGQL--------SVKLWYDKVGHQLIVNVLQATDLPARVDGRPRNPYVKMYF 786

Query: 312 LPDR 315
           LPDR
Sbjct: 787 LPDR 790

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Homo sapiens (taxid: 9606)

>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 124/309 (40%), Gaps = 92/309 (29%)

Query: 72   LDERIKKFLAH--PLSWKPSA----DGK---YMIGHM---ILRKSGDRYPSASSTLGIKV 119
            LD ++ + L H  PLS         +GK   Y+  H    I R S D   S +  LGI++
Sbjct: 4387 LDRKLPERLVHSRPLSQHQEQILQMNGKTMHYIFPHARIKITRDSKDHTVSGNG-LGIRI 4445

Query: 120  IGGKLL--EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177
            +GGK +    G  GA I K+  G  A+  G L+ G QV+EWNG  +  K++++V+ II +
Sbjct: 4446 VGGKEIPGHSGEIGAYIAKILPGGSAEHSGKLIEGMQVLEWNGIPLTSKTYEEVQSIINQ 4505

Query: 178  SRQEPQV------------------EL-----IVSRRIQPKYAPTLSKDVYERVRDKPSV 214
               E ++                  EL     +V +   P   P       ++V  + S 
Sbjct: 4506 QSGEAEICVRLDLNMLSDSENPQHLELHEPPKVVDKAKSPGVDPKQLAAELQKVSLQQSP 4565

Query: 215  LVTS--------------------------PGSPDIHSGRPG--RPVPSHHTDHHPITNS 246
            LV S                          PGSP +   + G  +P     T  HPIT  
Sbjct: 4566 LVMSSVVEKGAHAHSGPTSAGSSSVPSPGQPGSPSVSKKKHGGSKPTDVSKTASHPIT-- 4623

Query: 247  SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPY 306
               G IQ++   D G L     +IH                ++ A +LVPR N     P+
Sbjct: 4624 ---GEIQLQINYDLGNL-----IIH----------------ILQARNLVPRDNNGYSDPF 4659

Query: 307  AKIYLLPDR 315
             K+YLLP R
Sbjct: 4660 VKVYLLPGR 4668

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus GN=PCLO PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 124/311 (39%), Gaps = 94/311 (30%)

Query: 72   LDERIKKFLAHPLSWKPSA---------DGK---YMIGHM---ILRKSGDRYPSASSTLG 116
            LD R+ + L+H  S  PS          +GK   Y+  H    +LR   D   S +  LG
Sbjct: 4376 LDRRLPEKLSH--SRPPSQHQDQISCQINGKPLQYIFPHARLKLLRDPKDHTVSGNG-LG 4432

Query: 117  IKVIGGKLL--EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            I+V+GGK +    G  GA I KV  G  A+  G L+ G QV+EWNG  + GK++++V++I
Sbjct: 4433 IRVVGGKEIPGSSGEIGAYIAKVLPGGNAEQTGKLIEGMQVLEWNGIPLTGKTYEEVQNI 4492

Query: 175  IAES-----------------RQEPQ----------VELIVSRRIQPK------------ 195
            I +                   + PQ          V+   S  + PK            
Sbjct: 4493 IIQQCGEAEICVRLDLNMLSDSENPQHLELHEPVKAVDKAKSPGVDPKQLAAELQKVSLQ 4552

Query: 196  YAPTL-------SKDVYERVRDKPSVLVTS---PGSPDIHSGR-PGRPVPSHHTDHHPIT 244
             AP L       S  V+       S  V S   PGSP +   R   +P  +  +  HPIT
Sbjct: 4553 QAPLLASSGVEKSSHVHSGTTSATSSAVPSPGQPGSPSVSKKRHSSKPAEATKSGSHPIT 4612

Query: 245  NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
                 G IQ++   D     L++ ++                    A +L PR N     
Sbjct: 4613 -----GEIQLQINYDKHLGNLIIHILQ-------------------ARNLAPRDNNGYSD 4648

Query: 305  PYAKIYLLPDR 315
            P+ K+YLLP R
Sbjct: 4649 PFVKVYLLPGR 4659

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Gallus gallus (taxid: 9031)

>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 108/257 (42%), Gaps = 86/257 (33%)

Query: 115  LGIKVIGGKLL--EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
            LGI+++GGK +    G  GA I K+  G  A+  G L+ G QV+EWNG  +  K++++V+
Sbjct: 4459 LGIRIVGGKEIPGHSGEIGAYIAKILPGESAEHTGPLMEGMQVLEWNGVPLTSKTYEEVQ 4518

Query: 173  DIIAESRQE--------------------------PQVELIVSRRIQPKYAPTLSKDVYE 206
             II +   E                          P+V+   S  + PK    L+ ++ +
Sbjct: 4519 SIINQQSGEAEICVRLDLNMLSDSENPQHLELHEPPKVDKAKSPGVDPKQ---LAAEL-Q 4574

Query: 207  RVRDKPSVLV---------------TSPGSPDIHS-GRPGRPVPSHH-------TD---- 239
            +V  + S LV               TS GS  + S G+PG P  S         TD    
Sbjct: 4575 KVSLQQSPLVMSSVVEKGSHAHSGPTSAGSSSVPSPGQPGSPSVSKKKHSSTKPTDGPKA 4634

Query: 240  -HHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS 298
              HPIT     G IQ++   D G L     +IH                ++ A +LVPR 
Sbjct: 4635 ASHPIT-----GEIQLQINYDLGNL-----IIH----------------ILQARNLVPRD 4668

Query: 299  NGQPRCPYAKIYLLPDR 315
            N     P+ K+YLLP R
Sbjct: 4669 NNGYSDPFVKVYLLPGR 4685

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
242020223	1131	conserved hypothetical protein [Pediculu	0.669	0.186	0.501	2e-59
307179861	2298	Regulating synaptic membrane exocytosis	0.660	0.090	0.471	2e-56
307196949	2596	Regulating synaptic membrane exocytosis	0.663	0.080	0.463	1e-53
328784630	2463	PREDICTED: hypothetical protein LOC41000	0.653	0.083	0.464	6e-53
332029406	1214	Regulating synaptic membrane exocytosis	0.660	0.171	0.492	1e-52
270007727	1730	hypothetical protein TcasGA2_TC014424 [T	0.834	0.152	0.443	3e-52
357615156	759	hypothetical protein KGM_04010 [Danaus p	0.647	0.268	0.487	5e-49
328702363	1281	PREDICTED: regulating synaptic membrane	0.765	0.188	0.419	1e-45
157137000	1883	hypothetical protein AaeL_AAEL000479 [Ae	0.657	0.109	0.434	2e-45
427796537	1438	Putative rab3 effector rim1, partial [Rh	0.666	0.146	0.426	4e-45

>gi|242020223|ref|XP_002430555.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515719|gb|EEB17817.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 164/261 (62%), Gaps = 50/261 (19%)

Query: 80  LAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKK 139
             HPLSW+ S DG ++IGHMIL +S +     +  LG+KV G +LL+ G RGA++EKVKK
Sbjct: 190 FKHPLSWEISEDGTHLIGHMILNRSREPMSGTTPILGLKVEGNRLLDSGIRGALVEKVKK 249

Query: 140 GSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK---- 195
           GS AD+EG L  GD+VIEWNGR  RG + Q+V DIIAESRQ+PQVEL+VSR I PK    
Sbjct: 250 GSIADVEGQLRPGDEVIEWNGRLFRGATSQEVSDIIAESRQDPQVELLVSRPIGPKRQGG 309

Query: 196 ------------------YAPTLS--KDVYE-RVRDKPSVLVTSPGSPDIHSGRPGRPVP 234
                              +P+L+  KDVYE R+RDKPSV VTSPGSPD+HS RP R   
Sbjct: 310 TLPWTQGQLHTFSRRSLNISPSLTQNKDVYETRMRDKPSVRVTSPGSPDMHSLRPSR--- 366

Query: 235 SHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASL 294
                    TN++VGGR+QVK + D+  L+L VTL+                   CAA L
Sbjct: 367 ---IKQTVATNANVGGRMQVKLWFDAVALQLAVTLV-------------------CAAEL 404

Query: 295 VPRSNGQPRCPYAKIYLLPDR 315
            PRSNG+PR PYAK++LLPD+
Sbjct: 405 TPRSNGEPRNPYAKLFLLPDK 425

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179861|gb|EFN68019.1| Regulating synaptic membrane exocytosis protein 2 [Camponotus floridanus]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/278 (47%), Positives = 165/278 (59%), Gaps = 70/278 (25%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGS 141
           HPLSW+ S DG+ +IGHM+LRKS     S SS LG+KV+GGKLLEDG+RGA+IEKVKKGS
Sbjct: 384 HPLSWQVSEDGQKIIGHMVLRKSAGS-GSCSSILGLKVVGGKLLEDGSRGALIEKVKKGS 442

Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKY----- 196
            AD+EG L  GD+VI WNGRS++GKSF++V DII ESR EPQ+EL+V R++         
Sbjct: 443 TADVEGQLRPGDEVIAWNGRSLQGKSFREVYDIITESRLEPQIELVVERKLSTTTTGMTP 502

Query: 197 ------APTLSK---------------------------------DVYERVRDKPSVLVT 217
                  P  S+                                 ++Y+  R+KPSVLVT
Sbjct: 503 AGPGPSTPMASRRIVAQSQWRQKHETIPGSVRKRYILVDTARSLAELYDARREKPSVLVT 562

Query: 218 SPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYL 277
           SPGSPD+H+   GR     H+  HP  N++VGG IQVK   D   L+L+VT+I       
Sbjct: 563 SPGSPDLHAQGRGR-----HS-RHPTGNANVGGSIQVKLGFDPMGLQLIVTII------- 609

Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
                       CAA L P+SNGQPR PYAKI+LLPD+
Sbjct: 610 ------------CAAGLTPKSNGQPRNPYAKIFLLPDK 635

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196949|gb|EFN78324.1| Regulating synaptic membrane exocytosis protein 2 [Harpegnathos saltator]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/272 (46%), Positives = 157/272 (57%), Gaps = 63/272 (23%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDR---YPSASSTLGIKVIGGKLLEDGTRGAIIEKVK 138
           HPLSW+ S DG+ +IGHM+LRKS +    + S SS LG+KV+GGKLLEDG+ GA IEKVK
Sbjct: 380 HPLSWQVSRDGQKIIGHMVLRKSANPQSGFDSGSSILGLKVVGGKLLEDGSMGAFIEKVK 439

Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
           +GS AD+EG L  GD+VI+WN RS++GKSF  V +II ESR EPQ+ELIVSR +      
Sbjct: 440 EGSTADIEGRLRPGDEVIKWNRRSLQGKSFDVVAEIIRESRLEPQIELIVSRNLSSTTTG 499

Query: 199 TL-----------------------------------SKDVYERVRDKPSVLVTSPGSPD 223
            +                                    K++Y+  R+KPSVLVTSPGSPD
Sbjct: 500 AMPAGPGPSTPMASRRIVAQSQWRQKHETISGPQQPHHKELYDARREKPSVLVTSPGSPD 559

Query: 224 IHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLR 283
           +H+   GRP        HP  N+SV G IQVK   D   L+L VT+I             
Sbjct: 560 LHAQGRGRP------SRHPTGNASVEGSIQVKLDFDPVALQLFVTII------------- 600

Query: 284 LVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
                 CA  L  R+NGQPR PYAK++LLPDR
Sbjct: 601 ------CAEGLSLRNNGQPRNPYAKVFLLPDR 626

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784630|ref|XP_393489.4| PREDICTED: hypothetical protein LOC410001 [Apis mellifera]

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/278 (46%), Positives = 160/278 (57%), Gaps = 72/278 (25%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGS 141
           HP  W+ S DG+ +IGHM+LRK      S+SS LG+KV+GGKLLEDG+ GA+IEKVKKGS
Sbjct: 485 HP--WQVSRDGQKIIGHMVLRKQSGSG-SSSSILGLKVVGGKLLEDGSMGAVIEKVKKGS 541

Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
            AD+EG L  GD+VI+WNGRS++GKSF +V DIIAESRQ+PQVEL+VSR I     P  +
Sbjct: 542 TADIEGQLRPGDEVIKWNGRSLQGKSFGEVYDIIAESRQDPQVELVVSRNISSTAGPMAT 601

Query: 202 --------------------------------------------KDVYERVRDKPSVLVT 217
                                                        ++Y+  R+KPSVLVT
Sbjct: 602 GGPMTGGPMAVRKTAQTQWRQKHPETISGPGRWLKSSVEVERSLAELYDARREKPSVLVT 661

Query: 218 SPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYL 277
           SPGSPD H+    R +       H  +N++VGG +QVK   D   LRL+VTLI       
Sbjct: 662 SPGSPDFHARGHARHL------RHASSNANVGGNLQVKLSFDPVALRLIVTLI------- 708

Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
                       CAA L PRSNGQPR PYAKI+LLPD+
Sbjct: 709 ------------CAAGLTPRSNGQPRNPYAKIFLLPDK 734

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029406|gb|EGI69360.1| Regulating synaptic membrane exocytosis protein 2 [Acromyrmex echinatior]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 159/254 (62%), Gaps = 46/254 (18%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGS 141
           HPLSW+ S DG+ +IGHM+LRKS     S SS LG+KV+GGKLLEDG+ GA+IEKVKKGS
Sbjct: 286 HPLSWQASEDGQKIIGHMVLRKSAGS-GSCSSILGLKVVGGKLLEDGSMGALIEKVKKGS 344

Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK------ 195
            AD+EG L  GD+VI WNGRS++GKSF++V DIIAESR EPQ+ELIV R++         
Sbjct: 345 TADVEGQLRPGDEVIAWNGRSLQGKSFREVYDIIAESRLEPQIELIVERKLSTMGMAPAG 404

Query: 196 ---YAPTLSKDVYERVRDK-----------PSVLVTSPGSPDIHSGRPGRPVPSHHTDHH 241
                P  S+ +  + + +           P   VTSPGSPD+++   GR   S H+  H
Sbjct: 405 PGPSTPMTSRRIVAQSQWRQKHETISGPPTPHHKVTSPGSPDLYA--QGR---SRHS-RH 458

Query: 242 PITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQ 301
           P  N +VGG IQVK   D   L+L+VT+I                   CAA L P+SNGQ
Sbjct: 459 PTGNVNVGGSIQVKLGFDPVGLQLIVTII-------------------CAAGLTPKSNGQ 499

Query: 302 PRCPYAKIYLLPDR 315
           PR PYAK++LLPD+
Sbjct: 500 PRNPYAKVFLLPDK 513

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007727|gb|EFA04175.1| hypothetical protein TcasGA2_TC014424 [Tribolium castaneum]

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 53/316 (16%)

Query: 19  TPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAIL----DE 74
            P   P  D   D R  T R R + +R+ + E     G++ S    G +  +      D 
Sbjct: 344 APQHRPLQDVTADNRCFTER-RKKTVRFDQHENWDRQGSQDSHRDSGIDTSSTFTSSEDS 402

Query: 75  RIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASST--LGIKVIGGKLLEDGTRGA 132
                  HPLSW+ SA+G  MIGHMILR+ G R  S SS   LG+KV+GGK+LE+G RGA
Sbjct: 403 TRGDLPKHPLSWQVSANGCRMIGHMILRR-GSRETSGSSANILGLKVVGGKILENGLRGA 461

Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192
           IIEKVKKGS AD+EG L  GD+VIEWNGR ++GK++Q+V DIIAES+ E  VELIVSR +
Sbjct: 462 IIEKVKKGSIADIEGQLRPGDEVIEWNGRPLQGKTYQEVADIIAESKHEANVELIVSRSM 521

Query: 193 QPKYA--PTLSKDVYERVR-----------DKPSVLVTSPGSPDIHSGRPGRPVPSHHTD 239
             + A   T  + V  R +           ++P VLVTSPGSP+       RP PS    
Sbjct: 522 GSRRAAQATWRQSVAHRGQSGQWQQEVEGYERPHVLVTSPGSPE-------RPRPS---- 570

Query: 240 HHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN 299
             P    SVGGRIQ+K   D  TL+L VT++                   CAA L PRS 
Sbjct: 571 --PALAPSVGGRIQIKLGFDPSTLQLFVTIV-------------------CAAGLTPRSP 609

Query: 300 GQPRCPYAKIYLLPDR 315
            QPR PY K++LLPDR
Sbjct: 610 HQPRSPYCKLFLLPDR 625

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357615156|gb|EHJ69501.1| hypothetical protein KGM_04010 [Danaus plexippus]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 154/244 (63%), Gaps = 40/244 (16%)

Query: 83  PLSWKPSADGKYMIGHMILRKS---GDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKK 139
           PLSW+ S+DG  M+GHM+LRKS   G  + SA+  LG+KV+GGK+L DGTRGAI+EKVKK
Sbjct: 449 PLSWQVSSDGTRMVGHMVLRKSVVEGSSHSSAA-ILGLKVVGGKMLPDGTRGAIVEKVKK 507

Query: 140 GSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPT 199
           GS ADLEG L  GD+V++WNG  ++G+S     +  A S+ +  VEL+VSR + P   P 
Sbjct: 508 GSIADLEGQLRIGDEVLQWNGVPLQGRSSLLQRNQQANSKHDSHVELVVSRPLAPSRVPA 567

Query: 200 LS----KDVYERVR---DKPSVLVTSPGSPDIHS-GRPGRPVPSHHTDHHPITNSSVGGR 251
            S    K+VY  +    +KPSVLVTSPGSPD+HS  R GR     H  H    N SV GR
Sbjct: 568 QSWRAHKEVYTEIMGGCEKPSVLVTSPGSPDMHSRRRSGR-----HNSH----NVSVAGR 618

Query: 252 IQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
           IQ+K Y D   L+L+VT++                    A++L PR +G PRCPYAKI+L
Sbjct: 619 IQLKVYFDIAALQLLVTVV-------------------SASNLSPRIDGSPRCPYAKIFL 659

Query: 312 LPDR 315
           LPD+
Sbjct: 660 LPDK 663

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702363|ref|XP_003241883.1| PREDICTED: regulating synaptic membrane exocytosis protein 2-like [Acyrthosiphon pisum]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/272 (41%), Positives = 165/272 (60%), Gaps = 31/272 (11%)

Query: 54  STGNEGSGSIGGKEKQAILDERIKKFL---AHPLSWKPSADGKYMIGHMILRKSGDRYP- 109
           ++ +E     G  E  A  D+  K  +   + P+SW+ S D K++IGHM+L KS    P 
Sbjct: 348 TSCDEHESEKGDAESNAGEDQTYKHSMTLSSQPMSWQRSPDNKFLIGHMVLNKSVWETPI 407

Query: 110 ----SASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164
               SA++ LG+K+ GGK L   G R AII++V+KGS AD+EG+L  GD+V+EWNG  ++
Sbjct: 408 SPSSSAAAMLGLKITGGKFLSATGRRCAIIDRVRKGSTADMEGNLKPGDEVLEWNGCLLQ 467

Query: 165 GKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP--TLSKDVYERVRDKPSVLVTSPGSP 222
           GK+ ++V DII+ES+  PQ+EL VSR I P+ A   T +K +Y+  +DKP V+VTSPGSP
Sbjct: 468 GKTQKEVSDIISESKHLPQIELKVSRSILPRRASYGTPTKGLYDLRKDKPYVMVTSPGSP 527

Query: 223 DIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTL 282
           +  +  P R + +  +   P  +  VGG+IQVK                      D  +L
Sbjct: 528 EHLASNPARVLRASKSVSGP-NSLHVGGKIQVK-------------------LGFDPQSL 567

Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314
           +LVVT+M A++L+PRS+G PR  YAK+ LLPD
Sbjct: 568 KLVVTIMAASNLLPRSDGSPRSAYAKVCLLPD 599

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137000|ref|XP_001656969.1| hypothetical protein AaeL_AAEL000479 [Aedes aegypti] gi|108884236|gb|EAT48461.1| AAEL000479-PA [Aedes aegypti]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 154/258 (59%), Gaps = 51/258 (19%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGS 141
           +P+SW+ SADG  MIGHM+L+++ D    +   LG++V GG++L    +GAI+E+V++GS
Sbjct: 220 NPVSWQVSADGSRMIGHMVLQRNSD----SEDVLGLRVRGGQVLPHNEKGAIVEQVQRGS 275

Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI--------- 192
            AD EGH+  GD+V+EWNG SMRGKS  +V DII+ S++EP VEL+++R I         
Sbjct: 276 IADQEGHIRPGDEVVEWNGHSMRGKSASNVYDIISASKREPLVELLLTREIAINRKNTQA 335

Query: 193 --QPKYAPTLSK-----DVYERVRDKPSVLVTSPGSPDIHSGR--------PGRPVPSHH 237
             +  ++PT  +     + Y R RDKPSVLVTSPGSPD+HS R        P R  P+  
Sbjct: 336 SWRKSHSPTRIQTHRGAENYIR-RDKPSVLVTSPGSPDLHSVRNYSTNLRYPNRLTPAAT 394

Query: 238 TDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPR 297
                   +SVGGR+Q+K                      D  +L+L+VT++ A  LVPR
Sbjct: 395 ATQQ---ENSVGGRVQLK-------------------LGFDPSSLQLIVTILGAKDLVPR 432

Query: 298 SNGQPRCPYAKIYLLPDR 315
            NG  R PYAKI LLPDR
Sbjct: 433 VNGAARNPYAKICLLPDR 450

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796537|gb|JAA63720.1| Putative rab3 effector rim1, partial [Rhipicephalus pulchellus]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/267 (42%), Positives = 156/267 (58%), Gaps = 57/267 (21%)

Query: 70  AILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASST-LGIKVIGGKLLEDG 128
           A L+E +   L HP SWKPSADG  M+GHM+L+K+     S+S+  LG+KV+GGK+LE G
Sbjct: 491 ATLNEDL--CLKHPASWKPSADGTRMLGHMVLKKNLQEGGSSSAAILGLKVVGGKILESG 548

Query: 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
             GA++EKVKKGS AD  GHL  GD+V+EWNGRS++GK++++V DII+ES+QE QVEL+V
Sbjct: 549 KLGALVEKVKKGSVADTVGHLRPGDEVLEWNGRSLQGKTYEEVYDIISESKQEMQVELVV 608

Query: 189 SRRIQ------------------PKYAPTLSKDV--YERVRDKPSVLVTSPGSPDIHSGR 228
           SR +                   P    T  +DV  ++    +PSV VT PGSP +    
Sbjct: 609 SRPLSDAGRGDISDRNMRRHVSGPSTGSTARRDVRKHDYSDRRPSVTVT-PGSPTL---- 663

Query: 229 PGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTL 288
                      H P  +  +GGRI++K + D+ +L+LVVT++                  
Sbjct: 664 ----------GHRPRRSPILGGRIRIKLWYDAQSLQLVVTIV------------------ 695

Query: 289 MCAASLVPRSNGQPRCPYAKIYLLPDR 315
            CA  L PRSN Q R PY K++LL DR
Sbjct: 696 -CATELPPRSNNQARNPYVKMFLLQDR 721

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
FB|FBgn0053547	2908	Rim "Rab3 interacting molecule	0.339	0.036	0.480	3.1e-43
UNIPROTKB|F1P9T3	1476	RIMS2 "Uncharacterized protein	0.752	0.160	0.336	2.4e-38
RGD|620001	1555	Rims2 "regulating synaptic mem	0.936	0.189	0.356	4.4e-38
UNIPROTKB|Q9JIS1	1555	Rims2 "Regulating synaptic mem	0.936	0.189	0.356	4.4e-38
UNIPROTKB|F1LNC5	1555	Rims2 "Regulating synaptic mem	0.936	0.189	0.353	1.9e-37
UNIPROTKB|D4AEJ9	1557	Rims2 "Regulating synaptic mem	0.936	0.189	0.353	1.9e-37
UNIPROTKB|F1LU25	1034	F1LU25 "Uncharacterized protei	0.450	0.137	0.456	3e-37
UNIPROTKB|J9NYS3	1611	RIMS2 "Uncharacterized protein	0.803	0.157	0.335	4e-37
UNIPROTKB|F1M1W0	1195	F1M1W0 "Uncharacterized protei	0.450	0.118	0.456	6e-37
UNIPROTKB|F1M9T0	1359	F1M9T0 "Uncharacterized protei	0.450	0.104	0.456	1.1e-36

FB|FBgn0053547 Rim "Rab3 interacting molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 3.1e-43, Sum P(4) = 3.1e-43
 Identities = 61/127 (48%), Positives = 77/127 (60%)

Query:    82 HPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTR----------- 130
             +P++W+ SAD   +IGHMILRK    Y      LG+KV GG+ L  G             
Sbjct:   822 NPVNWQTSADNTRLIGHMILRK----YYDGEDILGLKVNGGQPLATGGSVSGAGTGAAIG 877

Query:   131 -----GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
                  GAI+EKVK+GS ADLEG +  GD+++EWNGR +  KS  +V DII ESR + QVE
Sbjct:   878 AGGPCGAIVEKVKRGSVADLEGRIRPGDEILEWNGRGLHNKSADEVYDIIDESRLDAQVE 937

Query:   186 LIVSRRI 192
             LIVSR I
Sbjct:   938 LIVSRPI 944

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=ISS

GO:0017157 "regulation of exocytosis" evidence=ISS

GO:0070073 "clustering of voltage-gated calcium channels" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

UNIPROTKB|F1P9T3 RIMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 2.4e-38, Sum P(3) = 2.4e-38
 Identities = 92/273 (33%), Positives = 146/273 (53%)

Query:    10 RRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQ 69
             +R+ S+Q         S+    M +    S +E+L +   +++ S G +   S    E+ 
Sbjct:   532 KRKTSEQAVLSDSNTRSERQKKMMYFGGHSLEEDLEWSEPQIKDS-GVDTCSSTTLNEEH 590

Query:    70 AILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPSASSTLGIKVIGGKLLE 126
             +  D+       HP++W+PS DG  +IG ++L K    G     + + LG+KV+GGK+ E
Sbjct:   591 SHSDK-------HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTE 643

Query:   127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
              G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++V +II ES+ EPQVEL
Sbjct:   644 SGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 703

Query:   187 IVSRRIQ--PKYAPTL------SKDVYERVR-DKPSVLVTSPGSPDIHSGRPGRPVPSHH 237
             +VSR I   P+   +       S   +E  + D+PS+ +TSP SP +      R VP + 
Sbjct:   704 VVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISITSPMSPGML-----RDVPQY- 757

Query:   238 TDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLI 270
                       + G++ +K + D    +L+VT++
Sbjct:   758 ----------LSGQLSIKLWFDKVGHQLIVTIL 780

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|620001 Rims2 "regulating synaptic membrane exocytosis 2" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
 Identities = 119/334 (35%), Positives = 168/334 (50%)

Query:     2 LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRY---YRG----ELEG- 53
             + RN+S    Q       P R   S  G  MR  +  S +EEL     Y      E+E  
Sbjct:   477 MLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query:    54 STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
             S G +G       E  +           HP++W+PS DG  +IG ++L K    G     
Sbjct:   537 SVGEKGDMEYSWLEHASWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query:   111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
             + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct:   597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query:   171 VEDIIAESRQEPQVELIVSRRI--QPKYAPTL------SKDVYERVR-DKPSVLVTSPGS 221
             V +II ES+ EPQVEL+VSR I   P+   +       S   +E  + D+PS+ VTSP S
Sbjct:   657 VYNIILESKPEPQVELVVSRPIGDMPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMS 716

Query:   222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGT 281
             P +      R VP   +    +++ S+  R          T   V  +   +K + D   
Sbjct:   717 PGML-----RDVPQFLSGQ--LSSQSLSRR----------TTPFVPRV--QIKLWFDKVG 757

Query:   282 LRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
              +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct:   758 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 791

GO:0005515 "protein binding" evidence=IPI

GO:0006887 "exocytosis" evidence=TAS

GO:0017156 "calcium ion-dependent exocytosis" evidence=ISO

GO:0017157 "regulation of exocytosis" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0030073 "insulin secretion" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=IMP

UNIPROTKB|Q9JIS1 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
 Identities = 119/334 (35%), Positives = 168/334 (50%)

Query:     2 LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRY---YRG----ELEG- 53
             + RN+S    Q       P R   S  G  MR  +  S +EEL     Y      E+E  
Sbjct:   477 MLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query:    54 STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
             S G +G       E  +           HP++W+PS DG  +IG ++L K    G     
Sbjct:   537 SVGEKGDMEYSWLEHASWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query:   111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
             + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct:   597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query:   171 VEDIIAESRQEPQVELIVSRRI--QPKYAPTL------SKDVYERVR-DKPSVLVTSPGS 221
             V +II ES+ EPQVEL+VSR I   P+   +       S   +E  + D+PS+ VTSP S
Sbjct:   657 VYNIILESKPEPQVELVVSRPIGDMPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMS 716

Query:   222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGT 281
             P +      R VP   +    +++ S+  R          T   V  +   +K + D   
Sbjct:   717 PGML-----RDVPQFLSGQ--LSSQSLSRR----------TTPFVPRV--QIKLWFDKVG 757

Query:   282 LRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
              +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct:   758 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 791

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

UNIPROTKB|F1LNC5 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 118/334 (35%), Positives = 167/334 (50%)

Query:     2 LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRY---YRG----ELEG- 53
             + RN+S    Q       P R   S  G  MR  +  S +EEL     Y      E+E  
Sbjct:   477 MLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query:    54 STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
             S   +G       E  +           HP++W+PS DG  +IG ++L K    G     
Sbjct:   537 SVSEKGDMEYSWLEHASWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query:   111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
             + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct:   597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query:   171 VEDIIAESRQEPQVELIVSRRI--QPKYAPTL------SKDVYERVR-DKPSVLVTSPGS 221
             V +II ES+ EPQVEL+VSR I   P+   +       S   +E  + D+PS+ VTSP S
Sbjct:   657 VYNIILESKPEPQVELVVSRPIGDMPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMS 716

Query:   222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGT 281
             P +      R VP   +    +++ S+  R          T   V  +   +K + D   
Sbjct:   717 PGML-----RDVPQFLSGQ--LSSQSLSRR----------TTPFVPRV--QIKLWFDKVG 757

Query:   282 LRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
              +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct:   758 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 791

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4AEJ9 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 118/334 (35%), Positives = 167/334 (50%)

Query:     2 LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRY---YRG----ELEG- 53
             + RN+S    Q       P R   S  G  MR  +  S +EEL     Y      E+E  
Sbjct:   477 MLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query:    54 STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
             S   +G       E  +           HP++W+PS DG  +IG ++L K    G     
Sbjct:   537 SVSEKGDMEYSWLEHASWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query:   111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
             + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct:   597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query:   171 VEDIIAESRQEPQVELIVSRRI--QPKYAPTL------SKDVYERVR-DKPSVLVTSPGS 221
             V +II ES+ EPQVEL+VSR I   P+   +       S   +E  + D+PS+ VTSP S
Sbjct:   657 VYNIILESKPEPQVELVVSRPIGDMPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMS 716

Query:   222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGT 281
             P +      R VP   +    +++ S+  R          T   V  +   +K + D   
Sbjct:   717 PGML-----RDVPQFLSGQ--LSSQSLSRR----------TTPFVPRV--QIKLWFDKVG 757

Query:   282 LRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
              +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct:   758 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 791

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LU25 F1LU25 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
 Identities = 69/151 (45%), Positives = 98/151 (64%)

Query:    81 AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
             +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct:   468 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 527

Query:   141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR------RIQP 194
             S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR      RI  
Sbjct:   528 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 587

Query:   195 KYAPTL--SKDVYERVR-DKPSVLVTSPGSP 222
                P L  S   +E  + ++PS+ V SP SP
Sbjct:   588 SSHPPLESSSSSFESQKMERPSISVISPTSP 618

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NYS3 RIMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 97/289 (33%), Positives = 145/289 (50%)

Query:     2 LTRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRY---YRG----ELEG- 53
             + RN+S    Q       P +   S  G  MR  +  S +EEL     Y      E+E  
Sbjct:   477 MLRNDSLSSDQSESVRPPPPKPHKSKKGGKMRQVSLSSSEEELASTPEYTSCDDVEIESE 536

Query:    54 STGNEGSGSIGGKEKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRK---SGDRYPS 110
             S   +G       +  +           HP++W+PS DG  +IG ++L K    G     
Sbjct:   537 SVSEKGDMDYNWLDHTSWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRD 596

Query:   111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
             + + LG+KV+GGK+ E G   A I KVKKGS AD  GHL  GD+V+EWNGR ++G +F++
Sbjct:   597 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEE 656

Query:   171 VEDIIAESRQEPQVELIVSRRIQ--PKYAPTL------SKDVYERVR-DKPSVLVTSPGS 221
             V +II ES+ EPQVEL+VSR I   P+   +       S   +E  + D+PS+ +TSP S
Sbjct:   657 VYNIILESKPEPQVELVVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISITSPMS 716

Query:   222 PDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLI 270
             P +      R VP +           + G++ +K + D    +L+VT++
Sbjct:   717 PGML-----RDVPQY-----------LSGQLSIKLWFDKVGHQLIVTIL 749

GO:0046872 "metal ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1M1W0 F1M1W0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 6.0e-37, Sum P(3) = 6.0e-37
 Identities = 69/151 (45%), Positives = 98/151 (64%)

Query:    81 AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
             +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct:   313 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 372

Query:   141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR------RIQP 194
             S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR      RI  
Sbjct:   373 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 432

Query:   195 KYAPTL--SKDVYERVR-DKPSVLVTSPGSP 222
                P L  S   +E  + ++PS+ V SP SP
Sbjct:   433 SSHPPLESSSSSFESQKMERPSISVISPTSP 463

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1M9T0 F1M9T0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
 Identities = 69/151 (45%), Positives = 98/151 (64%)

Query:    81 AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
             +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct:   313 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 372

Query:   141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR------RIQP 194
             S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR      RI  
Sbjct:   373 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE 432

Query:   195 KYAPTL--SKDVYERVR-DKPSVLVTSPGSP 222
                P L  S   +E  + ++PS+ V SP SP
Sbjct:   433 SSHPPLESSSSSFESQKMERPSISVISPTSP 463

GO:0046872 "metal ion binding" evidence=IEA

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	315
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-13
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	3e-11
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-10
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	3e-07
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	7e-07
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	7e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	5e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	0.001
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	0.002
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	0.003
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 98  HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE 157
            + LRK           LG  + GGK   D   G  + +V+ G PA+  G L  GD+++E
Sbjct: 3   TVTLRKDPGG------GLGFSLRGGK---DSGGGIFVSRVEPGGPAERGG-LRVGDRILE 52

Query: 158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
            NG S+ G + ++  +++  S    +V L V
Sbjct: 53  VNGVSVEGLTHEEAVELLKNSG--DEVTLTV 81

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  ++GGK   D   G ++  V  GSPA   G L  GD ++E NG S+ G +  +  D+
Sbjct: 14  LGFSLVGGK---DEGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVEGLTHLEAVDL 69

Query: 175 IAESRQEPQVELIVSRR 191
           + ++  +  V L V R 
Sbjct: 70  LKKAGGK--VTLTVLRG 84

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
            ++ + D  T +L+VT++ A  L PR +G  R PY K+YLLPDR
Sbjct: 6   QIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
             LG  + GG        G ++  V+ GSPA+  G L AGD ++  NG  ++  + +DV 
Sbjct: 1   GGLGFSIRGG-----TEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVA 54

Query: 173 DIIAESRQEPQVELIV 188
           +++ +   E  V L V
Sbjct: 55  ELLKKEVGEK-VTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
           + LG    G  +        +I +V  GSPA   G L AGD+++  NG+ +  KS++D+ 
Sbjct: 1   AILGFVPGGPPI------EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKI--KSWEDLV 51

Query: 173 DIIAESRQEPQVELIVSR 190
           D + E+  +P + L V R
Sbjct: 52  DAVQENPGKP-LTLTVER 68

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 115 LGIKV------IGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           LG+ V      +  +L    T+G ++  V  GSPA   G L  GD ++  NG+ +  KS 
Sbjct: 3   LGVTVQDLTPDLAEELGLKDTKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPV--KSV 59

Query: 169 QDVEDIIAESRQEPQVELIVSR 190
            D+   +AE +   +V L V R
Sbjct: 60  ADLRRALAELKPGDKVTLTVLR 81

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  ++GG    DG  G  + +V  G  A+  G L  GD+++  NG+ +   S  +    
Sbjct: 12  LGFSLVGG---SDGDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLA 67

Query: 175 IAESRQEPQVELI 187
           +  S  E  + ++
Sbjct: 68  LKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           +  RGA++ +V  GSPA+ +  L AGD +   NG+ +   SF D+   I   +   +V L
Sbjct: 254 EKQRGALVAQVLPGSPAE-KAGLKAGDVITSVNGKPI--SSFADLRRAIGTLKPGKKVTL 310

Query: 187 IVSR 190
            + R
Sbjct: 311 GILR 314

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
               GA++  V  GSPA   G + AGD +   NG+ +   S  D+   +A +R   +V L
Sbjct: 267 PVAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPV--ASLSDLVAAVASNRPGDEVAL 323

Query: 187 IVSRRIQPK 195
            + R  + +
Sbjct: 324 KLLRGGKER 332

Length = 347

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 283 RLVVTLMCAASLVPR-SNGQPRCPYAKIYLLPD 314
           +L V+L+ A +L PR  +     P+ K+ LLPD
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD 47

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           +L+VT+    +L P  +     PY ++YLLPD+
Sbjct: 17  KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDK 49

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.51
KOG3550|consensus	207		99.5
KOG3571|consensus	626		99.28
KOG3209|consensus	984		99.24
KOG3551|consensus	506		99.23
KOG1892|consensus	1629		99.23
KOG3209|consensus	984		99.16
KOG3549|consensus	505		99.12
KOG3553|consensus	124		99.1
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.05
KOG3580|consensus	1027		99.05
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.01
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.95
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	98.89
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	98.89
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	98.88
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	98.85
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	98.77
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	98.76
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	98.74
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.72
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	98.72
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	98.7
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	98.69
KOG1028|consensus	421		98.69
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	98.67
KOG3580|consensus	1027		98.65
KOG3651|consensus	429		98.64
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	98.63
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.62
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	98.62
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	98.62
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	98.6
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	98.59
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	98.57
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	98.56
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	98.54
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	98.54
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	98.53
KOG3606|consensus	358		98.52
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	98.43
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	98.42
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	98.41
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	98.4
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	98.38
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	98.38
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	98.37
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	98.36
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.35
KOG3552|consensus	1298		98.34
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	98.32
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	98.27
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.24
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	98.24
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.19
KOG3542|consensus	1283		98.18
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.18
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.15
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.1
KOG3605|consensus	829		98.07
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.03
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.98
KOG0696|consensus	683		97.96
KOG0609|consensus	542		97.91
KOG1028|consensus	421		97.81
PRK11186	667	carboxy-terminal protease; Provisional	97.79
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	97.74
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.68
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.68
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.66
KOG0905|consensus	1639		97.61
PRK10139	455	serine endoprotease; Provisional	97.56
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.56
PRK10139	455	serine endoprotease; Provisional	97.56
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.55
PRK10942	473	serine endoprotease; Provisional	97.5
PRK10898	353	serine endoprotease; Provisional	97.5
PRK10942	473	serine endoprotease; Provisional	97.49
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.39
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.29
KOG3938|consensus	334		97.27
KOG3605|consensus	829		97.07
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.9
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.8
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	96.66
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.58
KOG1013|consensus	362		96.52
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.5
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	96.07
KOG0606|consensus	1205		96.07
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.02
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	95.96
KOG3129|consensus	231		95.82
PRK09681	276	putative type II secretion protein GspC; Provision	95.64
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	95.55
KOG1738|consensus	638		95.3
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	95.17
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	94.75
KOG1328|consensus	1103		94.2
KOG1421|consensus	955		93.52
KOG3532|consensus	1051		93.46
KOG1320|consensus	473		93.33
KOG1013|consensus	362		92.82
COG3975	558	Predicted protease with the C-terminal PDZ domain	92.67
KOG4407|consensus	1973		92.09
KOG2060|consensus	405		91.22
KOG1945|consensus	377		90.51
KOG4371|consensus	1332		90.09
COG3031	275	PulC Type II secretory pathway, component PulC [In	89.29
PF12812	78	PDZ_1: PDZ-like domain	86.79
COG0750	375	Predicted membrane-associated Zn-dependent proteas	84.21

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.51  E-value=9.6e-14  Score=106.91  Aligned_cols=80  Identities=36%  Similarity=0.636  Sum_probs=71.0

Q ss_pred             EEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhc
Q psy4487          99 MILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES  178 (315)
Q Consensus        99 v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s  178 (315)
                      ++|.|..      ..+|||.+.++.+..  ..++||..|.++|+|+++| |++||+|++|||+++.++++++++.+|+.+
T Consensus         2 v~l~k~~------~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~   72 (81)
T PF00595_consen    2 VTLEKSG------NGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA   72 (81)
T ss_dssp             EEEEEST------TSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred             EEEEeCC------CCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence            5666653      579999999988643  4699999999999999999 999999999999999999999999999999


Q ss_pred             CCCCcEEEEEE
Q psy4487         179 RQEPQVELIVS  189 (315)
Q Consensus       179 ~~~~~V~LvV~  189 (315)
                      ...  |+|+|+
T Consensus        73 ~~~--v~L~V~   81 (81)
T PF00595_consen   73 SNP--VTLTVQ   81 (81)
T ss_dssp             TSE--EEEEEE
T ss_pred             CCc--EEEEEC
Confidence            875  999875

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.50  E-value=6.8e-14  Score=121.26  Aligned_cols=76  Identities=29%  Similarity=0.460  Sum_probs=70.8

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..||||.|.||++.   ..+|||++|+|||.|++-|.|+-||++|+|||+++++--|+.|+++|+.+.+.  |.|+|+..
T Consensus       100 deglgfnvmggkeq---nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs--vklvvryt  174 (207)
T KOG3550|consen  100 DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS--VKLVVRYT  174 (207)
T ss_pred             ccccceeeccCccc---CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc--EEEEEecC
Confidence            47999999999986   46999999999999999999999999999999999999999999999999988  99998764


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus       175 p  175 (207)
T KOG3550|consen  175 P  175 (207)
T ss_pred             h
Confidence            3

>KOG3571|consensus

Probab=99.28  E-value=2.4e-11  Score=121.48  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             cccccccccccccCCCC--CCCccCC-CccCCCchhhhhHHhhhcc----CCCCCCcCCCCCCce--eEEEEEEeccCCC
Q psy4487          37 ARSRDEELRYYRGELEG--STGNEGS-GSIGGKEKQAILDERIKKF----LAHPLSWKPSADGKY--MIGHMILRKSGDR  107 (315)
Q Consensus        37 ~~~~~e~~~~~~~~~e~--~~~~~~~-~~~~g~~~~~~~~~~~~~~----~~~P~~wq~s~~g~~--~i~~v~L~k~~~~  107 (315)
                      .++..|++.|+|..+|+  +..+.-+ -++..+...+....+.+.-    ++.-.++.-..|...  .|..|.|+-..  
T Consensus       182 ~sse~d~~s~~d~Ded~~~sr~s~~Td~ss~srl~~r~K~rrrkkR~p~~~sr~SSfSSiTdSsmslnIITV~LnMe~--  259 (626)
T KOG3571|consen  182 LSSELDSTSFRDSDEDDLYSRLSSSTDQSSVSRLHRRKKRRRRKKRRPRVPSRASSFSSITDSSMSLNIITVTLNMET--  259 (626)
T ss_pred             ccccccceeeccCccccccccccccccchhHHHHHHHHHHhhhhhcCCCccccccccccccccccceeEEEEEecccc--
Confidence            37788888899987555  2222111 1122222111111111111    111222333344443  45555565443  


Q ss_pred             CCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEE
Q psy4487         108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVEL  186 (315)
Q Consensus       108 ~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~L  186 (315)
                          -+.|||+|+|-.. ..|+.||||+.|.+||+.+.+|+|.+||.||+||.+++++++.+|||.+|+++-.. ..++|
T Consensus       260 ----vnfLGiSivgqsn-~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~l  334 (626)
T KOG3571|consen  260 ----VNFLGISIVGQSN-ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKL  334 (626)
T ss_pred             ----cccceeEeecccC-cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEE
Confidence                4789999999554 56789999999999999999999999999999999999999999999999986442 23999


Q ss_pred             EEEeCCCCC
Q psy4487         187 IVSRRIQPK  195 (315)
Q Consensus       187 vV~R~~~~~  195 (315)
                      +|...+.+.
T Consensus       335 tvAk~~DP~  343 (626)
T KOG3571|consen  335 TVAKCWDPN  343 (626)
T ss_pred             EEeeccCCC
Confidence            999988765

>KOG3209|consensus

Probab=99.24  E-value=2.1e-11  Score=125.69  Aligned_cols=88  Identities=25%  Similarity=0.477  Sum_probs=78.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .|-|+|..       .||||+|.||.+..   .+|||..|++.|+|+++|+|+.||+|+.|+|++++|++|.+|+.++..
T Consensus       652 dV~L~rke-------sGFGFRiLGG~ep~---qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~  721 (984)
T KOG3209|consen  652 DVFLRRKE-------SGFGFRILGGDEPG---QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEA  721 (984)
T ss_pred             eEEEEeec-------cccceEEecCCCCC---CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHH
Confidence            44566653       69999999998753   589999999999999999999999999999999999999999999988


Q ss_pred             cCCCCcEEEEEEeCCCCC
Q psy4487         178 SRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~~~  195 (315)
                      +....+|.|+|+|.....
T Consensus       722 AArnghV~LtVRRkv~~~  739 (984)
T KOG3209|consen  722 AARNGHVNLTVRRKVRTG  739 (984)
T ss_pred             HHhcCceEEEEeeeeeec
Confidence            777778999999998544

>KOG3551|consensus

Probab=99.23  E-value=1.6e-11  Score=119.58  Aligned_cols=85  Identities=27%  Similarity=0.402  Sum_probs=76.0

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      .+|.+.|..      .+||||+|.||++.   .++|+|++|++|-+|++.+.|..||.||+|||.++.+.||+||++.||
T Consensus        86 R~V~V~K~d------~gGLGISIKGGreN---kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK  156 (506)
T KOG3551|consen   86 RRVRVVKQD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK  156 (506)
T ss_pred             ceeEEEEec------CCcceEEeecCccc---CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence            566777764      58999999999985   589999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCC
Q psy4487         177 ESRQEPQVELIVSRRI  192 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~  192 (315)
                      .++.+  |.|.|..-.
T Consensus       157 raGke--V~levKy~R  170 (506)
T KOG3551|consen  157 RAGKE--VLLEVKYMR  170 (506)
T ss_pred             hhCce--eeeeeeeeh
Confidence            99987  888775444

>KOG1892|consensus

Probab=99.23  E-value=4.7e-11  Score=125.87  Aligned_cols=90  Identities=26%  Similarity=0.397  Sum_probs=81.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .|..|+|+|+        +|+|++||-.+......+||||.+|++||+|+.+|+|..||++|+|||.++.|++.+.|..+
T Consensus       933 ei~~vtL~Kn--------nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~l 1004 (1629)
T KOG1892|consen  933 EIITVTLKKN--------NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARL 1004 (1629)
T ss_pred             ceEEEEEecc--------CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHH
Confidence            4667778886        69999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      +.+.+..  |.|.|....+.
T Consensus      1005 mtrtg~v--V~leVaKqgAi 1022 (1629)
T KOG1892|consen 1005 MTRTGNV--VHLEVAKQGAI 1022 (1629)
T ss_pred             HhccCCe--EEEehhhhhhH
Confidence            9999977  99998766543

>KOG3209|consensus

Probab=99.16  E-value=1.1e-10  Score=120.57  Aligned_cols=83  Identities=23%  Similarity=0.434  Sum_probs=72.8

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      -.|.|.|-       ..||||+|.||++.   .+++||-++.++|||.++|++++||+|++|||.+..+|+|+.|+++|+
T Consensus       900 ~~VelErG-------~kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk  969 (984)
T KOG3209|consen  900 YTVELERG-------AKGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK  969 (984)
T ss_pred             eEEEeecc-------ccccceEeeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHH
Confidence            34556654       48999999999764   589999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeC
Q psy4487         177 ESRQEPQVELIVSRR  191 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~  191 (315)
                      +.+..  |.|+++|.
T Consensus       970 ~gg~~--vll~Lr~g  982 (984)
T KOG3209|consen  970 QGGRR--VLLLLRRG  982 (984)
T ss_pred             hCCeE--EEEEeccC
Confidence            98766  77777664

>KOG3549|consensus

Probab=99.12  E-value=9.9e-11  Score=112.96  Aligned_cols=87  Identities=25%  Similarity=0.436  Sum_probs=78.4

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++++|.+      -+|||++|.||.+-   ..+++|++|.++-+|+..|.|-+||-||+|||+.++..+|+||+++|+
T Consensus        56 RtVtirRQ~------vGGlGLSIKGGaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLR  126 (505)
T KOG3549|consen   56 RTVTIRRQK------VGGLGLSIKGGAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILR  126 (505)
T ss_pred             eeEEEEeee------cCcceeeecccccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHH
Confidence            346788887      47999999999875   479999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      +++++  |+|+|..-.+.
T Consensus       127 NAGde--VtlTV~~lr~A  142 (505)
T KOG3549|consen  127 NAGDE--VTLTVKHLRAA  142 (505)
T ss_pred             hcCCE--EEEEeHhhhcC
Confidence            99988  99999766543

>KOG3553|consensus

Probab=99.10  E-value=1.7e-10  Score=93.88  Aligned_cols=102  Identities=23%  Similarity=0.334  Sum_probs=77.3

Q ss_pred             CCCCCCceeEEEEEEeccCCCC--CCCCCccceEEEcCcCC-------CCCCCCeEEEeecCCChhcccCCCCCCCEEEE
Q psy4487          87 KPSADGKYMIGHMILRKSGDRY--PSASSTLGIKVIGGKLL-------EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE  157 (315)
Q Consensus        87 q~s~~g~~~i~~v~L~k~~~~~--~~~~~gLGfsIvGGk~~-------~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILe  157 (315)
                      +|...-+-....+.|.|..+-.  ....--+||+|-||.+.       .-.+.||||++|.+||||+.+| |+.+|.|++
T Consensus         7 ~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQ   85 (124)
T KOG3553|consen    7 IPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQ   85 (124)
T ss_pred             CCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEE
Confidence            3333333444566777665321  12234589999999887       3457899999999999999887 999999999


Q ss_pred             ECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       158 VNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      |||-+++-+||+.|++.|++..   .+.++|.|..
T Consensus        86 vNG~DfTMvTHd~Avk~i~k~~---vl~mLVaR~~  117 (124)
T KOG3553|consen   86 VNGWDFTMVTHDQAVKRITKEE---VLRMLVARQS  117 (124)
T ss_pred             ecCceeEEEEhHHHHHHhhHhH---HHHHHHHhhc
Confidence            9999999999999999998843   2566666654

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.05  E-value=2.3e-09  Score=81.51  Aligned_cols=79  Identities=34%  Similarity=0.582  Sum_probs=65.7

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      ++.|.+..      ..+|||.+.++...   ..+++|..|.++++|+..| |++||+|++|||..+.+++++++..+++.
T Consensus         3 ~~~l~~~~------~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~   72 (82)
T cd00992           3 TVTLRKDP------GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKN   72 (82)
T ss_pred             EEEEEeCC------CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence            34566653      46899999987643   3589999999999999855 99999999999999999999999999998


Q ss_pred             cCCCCcEEEEE
Q psy4487         178 SRQEPQVELIV  188 (315)
Q Consensus       178 s~~~~~V~LvV  188 (315)
                      ....  ++|.|
T Consensus        73 ~~~~--v~l~v   81 (82)
T cd00992          73 SGDE--VTLTV   81 (82)
T ss_pred             CCCe--EEEEE
Confidence            7654  77765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3580|consensus

Probab=99.05  E-value=3.4e-10  Score=115.22  Aligned_cols=88  Identities=27%  Similarity=0.376  Sum_probs=79.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...++|.|.+      ..||||.|.||++.   ++|+..|+|+.|.|||||+  |.|+.||+|+-|||+++++.+|.-|+
T Consensus         9 QhTvTL~kdp------~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAv   80 (1027)
T KOG3580|consen    9 QHTVTLQKDP------KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAV   80 (1027)
T ss_pred             hheeeeecCC------CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHH
Confidence            3457788876      58999999999987   5678899999999999999  89999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ++|+.++..  ..|+|.|+..
T Consensus        81 QqLrksgK~--A~ItvkRprk   99 (1027)
T KOG3580|consen   81 QQLRKSGKV--AAITVKRPRK   99 (1027)
T ss_pred             HHHHhhccc--eeEEecccce
Confidence            999999987  7788888763

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.01  E-value=2.7e-09  Score=79.20  Aligned_cols=68  Identities=32%  Similarity=0.603  Sum_probs=59.5

Q ss_pred             ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      +|||.+.++.+     .+++|..|.++++|+..| |++||+|++|||.++.+.+++++.++|+...+ ..|+|.|
T Consensus         2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g-~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVG-EKVTLTV   69 (70)
T ss_pred             CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCC-CeEEEEE
Confidence            68999998654     489999999999999755 99999999999999999999999999998773 2477765

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.95  E-value=1.4e-08  Score=77.14  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=63.3

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..|||.+..+....   .+++|..|.++++|++.| |++||+|++|||+.+.+.++.++...++..+..  +.|.+.|.
T Consensus        12 ~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~--~~l~i~r~   84 (85)
T smart00228       12 GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGK--VTLTVLRG   84 (85)
T ss_pred             CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEeC
Confidence            68999998764321   589999999999999988 999999999999999999999999999887544  89988875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=98.89  E-value=3.3e-09  Score=89.42  Aligned_cols=47  Identities=28%  Similarity=0.435  Sum_probs=44.1

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR  315 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~  315 (315)
                      |+|+|+|.|+..                   ..+|.|+|++|+||++++.. +.+|||||+||+|++
T Consensus         2 G~i~~sl~Y~~~-------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~   49 (128)
T cd08392           2 GEIEFALHYNFR-------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDK   49 (128)
T ss_pred             cEEEEEEEEeCC-------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCC
Confidence            899999999998                   88999999999999999874 899999999999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=98.89  E-value=3.5e-09  Score=90.36  Aligned_cols=46  Identities=30%  Similarity=0.421  Sum_probs=44.3

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|++.                   +.+|.|+|++|+||++++..+.+|||||+||+||
T Consensus         2 G~i~~sL~Y~~~-------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~   47 (136)
T cd08406           2 GEILLSLSYLPT-------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD   47 (136)
T ss_pred             cEEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC
Confidence            899999999998                   8899999999999999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=98.88  E-value=4e-09  Score=88.73  Aligned_cols=46  Identities=26%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      +|+|+|.|++.                   ..+|.|+|++|+||++++..+.+|||||+|||||+
T Consensus         2 ~i~~sL~Y~~~-------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~   47 (124)
T cd08680           2 QVQIGLRYDSG-------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCS   47 (124)
T ss_pred             eEEEEEEECCC-------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCC
Confidence            58899999988                   88999999999999999989999999999999985

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=98.85  E-value=6.8e-09  Score=86.64  Aligned_cols=48  Identities=31%  Similarity=0.476  Sum_probs=44.3

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR  315 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~  315 (315)
                      +|+|+|+|.|+..                   ..+|.|+|++|+||++++.. +.+|||||+||+|+.
T Consensus         1 ~G~i~~sl~y~~~-------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~   49 (125)
T cd08393           1 QGSVQFALDYDPK-------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK   49 (125)
T ss_pred             CcEEEEEEEEECC-------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC
Confidence            4999999999998                   88999999999999999975 889999999999973

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=98.77  E-value=1.6e-08  Score=86.74  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=42.0

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC--CCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS--NGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~--~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|++.                   +.+|.|+|++|+||++++  ..+.+|||||++|+|+
T Consensus         2 Gel~~sL~Y~~~-------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~   49 (138)
T cd08407           2 GEVLLSISYLPA-------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ   49 (138)
T ss_pred             CEEEEEEEEeCC-------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC
Confidence            899999999999                   889999999999999998  3345899999999996

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=98.76  E-value=1.8e-08  Score=83.91  Aligned_cols=44  Identities=39%  Similarity=0.675  Sum_probs=41.2

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+|+|.|+..                     .|.|+|++|++|++++ ++.+|||||++|+|+
T Consensus         1 ~G~l~~~l~y~~~---------------------~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~   44 (122)
T cd08381           1 GGQVKLSISYKNG---------------------TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD   44 (122)
T ss_pred             CCeEEEEEEEeCC---------------------EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC
Confidence            5999999999966                     8999999999999999 889999999999986

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.74  E-value=2.4e-08  Score=86.53  Aligned_cols=48  Identities=33%  Similarity=0.553  Sum_probs=42.0

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd~  315 (315)
                      +..|+|+|+|.|..+                     .|.|+|++|+||++++ ..+.+|||||+||+|++
T Consensus        15 ~~~G~l~lsl~y~~~---------------------~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~   63 (146)
T cd04028          15 PSMGDIQLGLYDKKG---------------------QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGK   63 (146)
T ss_pred             CCcceEEEEEEeCCC---------------------EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCC
Confidence            446999999999544                     8999999999999985 57789999999999974

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.72  E-value=9.7e-08  Score=73.80  Aligned_cols=73  Identities=32%  Similarity=0.470  Sum_probs=59.3

Q ss_pred             ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +||+.+..-..    ..+++|..|.++|||+++| |++||.|++|||+.+  .+..+...+|........|.|.|.|...
T Consensus         2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen    2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            57888775332    3589999999999999988 999999999999999  5789999999766555679999999653

...

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=98.72  E-value=3e-08  Score=82.75  Aligned_cols=48  Identities=25%  Similarity=0.428  Sum_probs=45.3

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      .|+|+|+|.|++.                   +.+|.|+|++|+||++++.++..|||||++|||++
T Consensus         2 ~G~l~~sl~Y~~~-------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~   49 (124)
T cd08389           2 CGDLDVAFEYDPS-------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK   49 (124)
T ss_pred             CEEEEEEEEECCC-------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence            5999999999999                   88999999999999999999999999999999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=98.70  E-value=3.8e-08  Score=82.31  Aligned_cols=48  Identities=31%  Similarity=0.441  Sum_probs=43.4

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPDR  315 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd~  315 (315)
                      .|+|+|+|.|+..                   +..|.|+|++|+||++++. .+.+|||||+||+|+.
T Consensus         1 ~G~i~~sl~y~~~-------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~   49 (125)
T cd04029           1 SGEILFSLSYDYK-------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK   49 (125)
T ss_pred             CcEEEEEEEEECC-------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC
Confidence            3899999999988                   8899999999999999875 4789999999999963

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=98.69  E-value=3.2e-08  Score=84.44  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=43.6

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+++|.|+..                   ..+|.|+|++|+||++++.++..|||||++|+|+
T Consensus         2 ~ei~~sL~Y~~~-------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~   47 (138)
T cd08408           2 PELLLGLEYNAL-------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS   47 (138)
T ss_pred             CeEEEEeEEcCC-------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC
Confidence            689999999998                   8899999999999999999999999999999995

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG1028|consensus

Probab=98.69  E-value=2.9e-08  Score=99.44  Aligned_cols=52  Identities=33%  Similarity=0.509  Sum_probs=48.6

Q ss_pred             cCcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       245 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      +..+.|+|++++.|++.                   ..+|.|+|++|.+|++.+.+|.+|||||+|||||+
T Consensus       149 ~~~~~G~l~fsl~Yd~~-------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk  200 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDFE-------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK  200 (421)
T ss_pred             cceeeeeEEEEEEeccc-------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC
Confidence            45677999999999999                   88999999999999999988899999999999996

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=98.67  E-value=4.4e-08  Score=82.19  Aligned_cols=43  Identities=12%  Similarity=0.075  Sum_probs=38.5

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+++|.|++.                   ..+|+|+|++|++|+ .  .+.+|||||++|+|+
T Consensus         1 ~~l~fsL~Y~~~-------------------~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~   43 (118)
T cd08677           1 PKLHYSLSYDKQ-------------------KAELHVNILEAENIS-V--DAGCECYISGCVSVS   43 (118)
T ss_pred             CeEEEEEEEcCc-------------------CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCC
Confidence            579999999999                   899999999999999 3  345999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>KOG3580|consensus

Probab=98.65  E-value=6.2e-08  Score=99.10  Aligned_cols=75  Identities=25%  Similarity=0.478  Sum_probs=67.5

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      +...|+++.||.+     .||||..|..|++|++.| |+.||+||.||.+++.+++.+||+..|...+...+|+|+-++.
T Consensus       416 GdSvGLRLAGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k  489 (1027)
T KOG3580|consen  416 GDSVGLRLAGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK  489 (1027)
T ss_pred             CCeeeeEeccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence            4689999999986     599999999999999988 9999999999999999999999999999987766788876655


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus       490 ~  490 (1027)
T KOG3580|consen  490 A  490 (1027)
T ss_pred             h
Confidence            4

>KOG3651|consensus

Probab=98.64  E-value=1e-07  Score=90.99  Aligned_cols=84  Identities=27%  Similarity=0.393  Sum_probs=73.9

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .++|.|+.      .+-+||+|-||...+   ..+||-+|.-+.||+++|+++.||+|+.|||+++.|.+.-++.++|+.
T Consensus         7 ~v~ltKD~------~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~   77 (429)
T KOG3651|consen    7 TVELTKDE------KNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV   77 (429)
T ss_pred             cEEEeecc------ccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence            46788765      477899999998664   589999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEeCC
Q psy4487         178 SRQEPQVELIVSRRI  192 (315)
Q Consensus       178 s~~~~~V~LvV~R~~  192 (315)
                      +.++  |.+.+-.-.
T Consensus        78 ~~~e--V~IhyNKL~   90 (429)
T KOG3651|consen   78 SLNE--VKIHYNKLE   90 (429)
T ss_pred             hccc--eEEEehhcc
Confidence            9987  888764433

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=98.63  E-value=6.9e-08  Score=80.24  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|++++.|...                     .|.|+|++|+||++++ .+.+|||||+||+|+
T Consensus         1 G~l~l~~~~~~~---------------------~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~   43 (119)
T cd08685           1 GQLKLSIEGQNR---------------------KLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD   43 (119)
T ss_pred             CEEEEEEEEcCC---------------------EEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC
Confidence            788888888544                     8999999999999998 778999999999996

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.62  E-value=2.1e-07  Score=71.48  Aligned_cols=71  Identities=28%  Similarity=0.496  Sum_probs=59.3

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+|||.+.-.      ..+++|..|.++++|++.| |++||+|++|||+.+.+.++.++..+++...+. .+.|.|.|.
T Consensus         2 ~~lG~~~~~~------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~-~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYD------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT-KVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEc------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC-EEEEEEEcC
Confidence            4788887632      2479999999999999876 999999999999999988889999999775443 488998886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=98.62  E-value=9.6e-08  Score=78.73  Aligned_cols=48  Identities=35%  Similarity=0.551  Sum_probs=44.5

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      .|+|+|+|.|+..                   ..+|.|+|++|++|++++..+.+|||||++++|++
T Consensus         2 ~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~   49 (124)
T cd08385           2 LGKLQFSLDYDFQ-------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK   49 (124)
T ss_pred             ccEEEEEEEEeCC-------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence            4899999999988                   88999999999999999988899999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=98.62  E-value=9.1e-08  Score=80.32  Aligned_cols=48  Identities=23%  Similarity=0.374  Sum_probs=44.3

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR  315 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~  315 (315)
                      .|+|+|+|.|+..                   ...|.|+|++|++|++++.. +.+|||||++|+|++
T Consensus         2 ~G~l~~~l~y~~~-------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~   50 (128)
T cd08388           2 LGTLFFSLRYNSE-------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK   50 (128)
T ss_pred             CeEEEEEEEEECC-------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc
Confidence            5999999999999                   88999999999999999875 889999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.60  E-value=1.2e-07  Score=77.58  Aligned_cols=46  Identities=30%  Similarity=0.462  Sum_probs=42.9

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|+..                   ...|.|+|++|+||++.+ ..+..|||||++|+|+
T Consensus         1 G~i~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~   47 (123)
T cd08521           1 GEIEFSLSYNYK-------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD   47 (123)
T ss_pred             CeEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC
Confidence            799999999988                   889999999999999998 6788999999999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=98.59  E-value=1.5e-07  Score=77.73  Aligned_cols=47  Identities=34%  Similarity=0.481  Sum_probs=44.4

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+|+|.|++.                   ...|.|+|++|++|++++..+.+|||||++|+|+
T Consensus         2 ~G~l~~sl~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~   48 (124)
T cd08387           2 RGELHFSLEYDKD-------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD   48 (124)
T ss_pred             CCEEEEEEEECCC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC
Confidence            5999999999998                   8899999999999999998889999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=98.57  E-value=1.6e-07  Score=77.52  Aligned_cols=47  Identities=36%  Similarity=0.578  Sum_probs=44.1

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+|+|.|+..                   ..+|.|+|++|++|+.++..+.+|||||++|+|+
T Consensus         2 ~G~l~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~   48 (127)
T cd04030           2 LGRIQLTIRYSSQ-------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD   48 (127)
T ss_pred             CeEEEEEEEEeCC-------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence            3899999999998                   8899999999999999998899999999999985

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=98.56  E-value=1.6e-07  Score=79.05  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+|+|.|+..                   +.+|.|+|++|++|++++..+.+|||||++|+++
T Consensus         1 ~G~l~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~   47 (136)
T cd08404           1 RGELLLSLCYQPT-------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG   47 (136)
T ss_pred             CCeEEEEEEEeCC-------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC
Confidence            4999999999988                   8899999999999999998899999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.54  E-value=2.2e-07  Score=76.35  Aligned_cols=47  Identities=49%  Similarity=0.872  Sum_probs=44.1

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+++|.|+..                   +.+|.|+|++|++|++++..+.+||||+++|+++
T Consensus         2 ~G~l~~~l~~~~~-------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~   48 (125)
T cd04031           2 TGRIQIQLWYDKV-------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD   48 (125)
T ss_pred             cEEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC
Confidence            4999999999998                   8899999999999999998889999999999974

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=98.54  E-value=1.7e-07  Score=79.57  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=42.9

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+|+|.|++.                   ..+|.|+|++|+||++.+ .+..|||||++|+|+
T Consensus         1 ~G~i~~sl~y~~~-------------------~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~   46 (137)
T cd08409           1 LGDIQISLTYNPT-------------------LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH   46 (137)
T ss_pred             CcEEEEEEEECCC-------------------CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC
Confidence            3899999999998                   889999999999999998 777999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=98.53  E-value=2.5e-07  Score=75.88  Aligned_cols=46  Identities=35%  Similarity=0.528  Sum_probs=43.1

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|+..                   +.+|.|+|++|++|++++ ..+..||||+++++|+
T Consensus         1 G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~   47 (123)
T cd08390           1 GRLWFSVQYDLE-------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD   47 (123)
T ss_pred             CEEEEEEEECCC-------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC
Confidence            899999999999                   889999999999999998 6788999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>KOG3606|consensus

Probab=98.52  E-value=2.2e-07  Score=87.57  Aligned_cols=76  Identities=25%  Similarity=0.465  Sum_probs=64.4

Q ss_pred             CCCccceEEEcCcCC---C---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcE
Q psy4487         111 ASSTLGIKVIGGKLL---E---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV  184 (315)
Q Consensus       111 ~~~gLGfsIvGGk~~---~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V  184 (315)
                      ....|||-|.-|...   .   ..-.||||+++.|||.|+..|.|-+.|+||||||+.+.|+|.+++..++-.....  +
T Consensus       169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshN--L  246 (358)
T KOG3606|consen  169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHN--L  246 (358)
T ss_pred             CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccc--e
Confidence            457899999887643   1   2347999999999999999999999999999999999999999999988776655  6


Q ss_pred             EEEE
Q psy4487         185 ELIV  188 (315)
Q Consensus       185 ~LvV  188 (315)
                      .++|
T Consensus       247 IiTV  250 (358)
T KOG3606|consen  247 IITV  250 (358)
T ss_pred             EEEe
Confidence            6665

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=98.43  E-value=5.6e-07  Score=75.16  Aligned_cols=45  Identities=24%  Similarity=0.448  Sum_probs=41.5

Q ss_pred             eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+|.|+..                   ..+|.|+|++|++|++.+..+.+|||||++++|+
T Consensus         1 ~i~~~l~y~~~-------------------~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~   45 (133)
T cd08384           1 KILVSLMYNTQ-------------------RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD   45 (133)
T ss_pred             CEEEEEEEcCC-------------------CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC
Confidence            57889999888                   8899999999999999998889999999999985

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.42  E-value=4.9e-07  Score=77.61  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+|+|.+.                   +.+|+|+|++|++|++.+.++..|||||++|+++
T Consensus         2 el~~sL~Y~p~-------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~   46 (135)
T cd08692           2 ELQLGTCFQAV-------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST   46 (135)
T ss_pred             eEEEEeeecCc-------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC
Confidence            68999999999                   9999999999999999977777899999999975

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=98.41  E-value=7.7e-07  Score=73.31  Aligned_cols=47  Identities=34%  Similarity=0.488  Sum_probs=44.0

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+|+|.|+..                   ...|.|+|++|++|++++..+..||||+++++|+
T Consensus         2 ~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~   48 (125)
T cd08386           2 LGRIQFSVSYDFQ-------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD   48 (125)
T ss_pred             ccEEEEEEEECCC-------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCC
Confidence            4999999999988                   8899999999999999998888999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=98.40  E-value=7.1e-07  Score=75.39  Aligned_cols=46  Identities=24%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|.+.                   ..+|.|+|+.|++|++.+..+.+|||||++|+++
T Consensus         1 G~i~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~   46 (135)
T cd08410           1 GELLLSLNYLPS-------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHG   46 (135)
T ss_pred             CcEEEEEEECCC-------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcC
Confidence            789999999888                   8899999999999999998889999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=98.38  E-value=7.9e-07  Score=74.73  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=43.4

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+|+|+|+..                   ..+|.|+|++|++|++.+..+..|||||++|+|.
T Consensus         1 ~G~l~~sl~y~~~-------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~   47 (136)
T cd08405           1 RGELLLSLCYNPT-------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK   47 (136)
T ss_pred             CcEEEEEEEEcCC-------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC
Confidence            4999999999988                   8899999999999999988889999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=98.38  E-value=9.4e-07  Score=72.82  Aligned_cols=47  Identities=26%  Similarity=0.375  Sum_probs=43.6

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+++|.|+..                   +..|.|+|++|++|++.+..+..|||||++++|+
T Consensus         1 ~G~~~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~   47 (123)
T cd04035           1 LGTLEFTLLYDPA-------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG   47 (123)
T ss_pred             CcEEEEEEEEeCC-------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC
Confidence            3899999999999                   8899999999999999988889999999999874

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=98.37  E-value=9e-07  Score=73.26  Aligned_cols=46  Identities=26%  Similarity=0.366  Sum_probs=43.1

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+|.|.|+..                   ..+|.|+|++|++|+.++..+..||||+++|+++
T Consensus         1 G~i~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~   46 (134)
T cd00276           1 GELLLSLSYLPT-------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG   46 (134)
T ss_pred             CeEEEEEEeeCC-------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC
Confidence            789999999988                   7899999999999999998889999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=98.36  E-value=1e-06  Score=77.24  Aligned_cols=59  Identities=24%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|.|.|+|.|++...-.+.       -+.-.....|.|+|++|++|++.+..+.+|||||++|+|+
T Consensus         1 ~G~l~~~l~y~~~~~~~~~-------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~   59 (162)
T cd04020           1 RGELKVALKYVPPESEGAL-------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD   59 (162)
T ss_pred             CceEEEEEEecCccccccc-------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence            4999999999885100000       0011125689999999999999998999999999999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.35  E-value=2.5e-06  Score=65.63  Aligned_cols=60  Identities=23%  Similarity=0.379  Sum_probs=50.9

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|+..| |+.||+|++|||..+.  +++++...|........+.|.+.|..
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            589999999999999876 9999999999999996  78899999987532234889888754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=98.34  E-value=5.9e-07  Score=95.49  Aligned_cols=75  Identities=27%  Similarity=0.531  Sum_probs=66.5

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.++++.        .|||-++-|+       +++|..|.+||++.  |+|++||+||.|||.++.+..++-|+++++.
T Consensus        58 ~vq~~r~~--------~lGFgfvagr-------PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRa  120 (1298)
T KOG3552|consen   58 QVQLQRNA--------SLGFGFVAGR-------PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRA  120 (1298)
T ss_pred             hhhhhccc--------cccceeecCC-------ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHH
Confidence            34566664        5777777763       79999999999999  9999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEeC
Q psy4487         178 SRQEPQVELIVSRR  191 (315)
Q Consensus       178 s~~~~~V~LvV~R~  191 (315)
                      +...  |.|+|.++
T Consensus       121 ce~s--v~ltV~qP  132 (1298)
T KOG3552|consen  121 CESS--VNLTVCQP  132 (1298)
T ss_pred             Hhhh--cceEEecc
Confidence            9987  99999996

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=98.32  E-value=1.3e-06  Score=73.25  Aligned_cols=46  Identities=22%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      |+|+|+|.|...                   +..|.|+|++|++|++.+..+.+|||||++|+++
T Consensus         1 g~l~~~~~y~~~-------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~   46 (134)
T cd08403           1 GELMFSLCYLPT-------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE   46 (134)
T ss_pred             CeEEEEEEEcCC-------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC
Confidence            789999999988                   8899999999999999998899999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=98.27  E-value=2.1e-06  Score=72.14  Aligned_cols=47  Identities=26%  Similarity=0.282  Sum_probs=43.5

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|+++|.|++.                   ..+|.|+|++|++|+.++.++.+|||||++|+++
T Consensus         1 ~G~l~~~l~y~~~-------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~   47 (136)
T cd08402           1 LGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN   47 (136)
T ss_pred             CcEEEEEeEEcCC-------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC
Confidence            3899999999988                   8899999999999999998999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.24  E-value=6.5e-06  Score=62.91  Aligned_cols=59  Identities=29%  Similarity=0.477  Sum_probs=49.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|+. | |++||+|++|||..+.  +++++..++........+.|.+.|..
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g   66 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE   66 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            4799999999999995 6 9999999999999995  78899999986433335899988864

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.24  E-value=3e-06  Score=71.23  Aligned_cols=47  Identities=30%  Similarity=0.478  Sum_probs=43.1

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .|+|.|++.|+..                   ...|.|+|++|++|++.+..+.+||||+++++++
T Consensus         2 ~G~l~~~l~y~~~-------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~   48 (133)
T cd04009           2 YGVLTVKAYYRAS-------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPR   48 (133)
T ss_pred             ceEEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECC
Confidence            4899999999988                   7799999999999999988889999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.19  E-value=7.3e-06  Score=81.25  Aligned_cols=79  Identities=23%  Similarity=0.337  Sum_probs=61.4

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..|+|+.+.-.........+++|..|.++|||+++| |+.||+|++|||+++.+.++.++...|+...+. .|.|.|.|.
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~-~v~ltv~r~  161 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGS-SVELTLRRG  161 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC-EEEEEEEEC
Confidence            468888875321111112379999999999999887 999999999999999999999999888765443 489998875


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus       162 g  162 (389)
T PLN00049        162 P  162 (389)
T ss_pred             C
Confidence            4

>KOG3542|consensus

Probab=98.18  E-value=2.2e-06  Score=88.94  Aligned_cols=86  Identities=29%  Similarity=0.456  Sum_probs=72.1

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .-..|+|.|..     ....|-|+++||.+..   .||||..|.||+.|++.| |+-||+|++|||++.++++...|.++
T Consensus       535 K~RqviLtk~s-----re~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~ei  605 (1283)
T KOG3542|consen  535 KPRQVILTKAS-----REDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEI  605 (1283)
T ss_pred             cceeEEEeccc-----ccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHH
Confidence            34567787742     2478999999998753   589999999999999988 99999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      |++..   ++.|.|..+.
T Consensus       606 Lrnnt---hLtltvKtNv  620 (1283)
T KOG3542|consen  606 LRNNT---HLTLTVKTNV  620 (1283)
T ss_pred             hcCCc---eEEEEEecce
Confidence            98874   3777776654

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.18  E-value=1e-05  Score=61.11  Aligned_cols=59  Identities=34%  Similarity=0.559  Sum_probs=49.8

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+++|..|.++++|++.| |++||+|++|||+.+.  +++++...++...+. .+.+.+.|..
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~-~~~l~v~r~~   70 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGK-PLTLTVERNG   70 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCc-eEEEEEEECC
Confidence            468999999999999877 9999999999999996  678998888876432 4888888754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.15  E-value=1.2e-05  Score=62.00  Aligned_cols=60  Identities=33%  Similarity=0.551  Sum_probs=49.9

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|++.| |+.||+|++|||+.+.  ++.++..++........+.|.+.|..
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            489999999999999877 9999999999999996  67788888877643334888887754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.10  E-value=1.1e-05  Score=61.34  Aligned_cols=57  Identities=35%  Similarity=0.454  Sum_probs=43.8

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+++|..|.++++|+..| |++||+|++|||..+.+  +.++   ++.......+.|.+.|..
T Consensus        12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~---l~~~~~~~~v~l~v~r~g   68 (80)
T cd00990          12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDR---LKEYQAGDPVELTVFRDD   68 (80)
T ss_pred             CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHH---HHhcCCCCEEEEEEEECC
Confidence            479999999999999877 99999999999999964  4444   433222234888888754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3605|consensus

Probab=98.07  E-value=4.4e-06  Score=86.41  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEc-CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIG-GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvG-Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .....|+|-|.+      +..||+-||- |-.  .--.-++|.....+|||++.|+|-+||+|++|||++|.|+...-+.
T Consensus       644 E~qKEVvv~K~k------GEiLGVViVESGWG--SmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQ  715 (829)
T KOG3605|consen  644 ENQKEVVLEKHK------GEILGVVIVESGWG--SILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQ  715 (829)
T ss_pred             cccceeeeeccc------CceeeEEEEecCcc--ccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHH
Confidence            345677888876      6899999984 221  2234578999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+||+.+....|.|.|-+-.
T Consensus       716 s~Ik~~KnQT~VkltiV~cp  735 (829)
T KOG3605|consen  716 SIIKGLKNQTAVKLNIVSCP  735 (829)
T ss_pred             HHHhcccccceEEEEEecCC
Confidence            99999998777888775543

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.03  E-value=1.5e-05  Score=79.61  Aligned_cols=74  Identities=26%  Similarity=0.406  Sum_probs=65.1

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      -.|+|+.+.-...     .++.|..+.+++||+++| |++||.|+.|||.++.+++.++|+..|+...+. +|+|.|.|.
T Consensus        99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt-~V~L~i~r~  171 (406)
T COG0793          99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT-KVTLTILRA  171 (406)
T ss_pred             ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC-eEEEEEEEc
Confidence            4689988874321     579999999999999998 999999999999999999999999999998874 599999997


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus       172 ~  172 (406)
T COG0793         172 G  172 (406)
T ss_pred             C
Confidence            3

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.98  E-value=2.1e-05  Score=76.10  Aligned_cols=72  Identities=31%  Similarity=0.454  Sum_probs=59.4

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+||+.+.--      ..+++|..|.++|||+++| |+.||+|++|||+.+.+.+..++...++...+. .|.|.|.|..
T Consensus        51 ~~lG~~~~~~------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~-~v~l~v~R~g  122 (334)
T TIGR00225        51 EGIGIQVGMD------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT-KVSLEILRAG  122 (334)
T ss_pred             EEEEEEEEEE------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC-EEEEEEEeCC
Confidence            5788888531      1379999999999999888 999999999999999988888888888764443 4899998874

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG0696|consensus

Probab=97.96  E-value=4.4e-06  Score=83.52  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=33.5

Q ss_pred             CcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       280 ~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      -...|.|+|.+|+||.|+|++|.+|||||+.|+||+
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~  213 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDP  213 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCC
Confidence            355899999999999999999999999999999985

>KOG0609|consensus

Probab=97.91  E-value=4.3e-05  Score=77.90  Aligned_cols=85  Identities=21%  Similarity=0.357  Sum_probs=70.7

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ..+.-+.+.|..      +.-||..|.--..     ..+||.+|..||.|++.|.|+.||+|++|||+++.+..-+++++
T Consensus       121 ~~vriv~i~k~~------~eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~  189 (542)
T KOG0609|consen  121 EAVRIVRIVKNT------GEPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQE  189 (542)
T ss_pred             ceeEEEEEeecC------CCccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHH
Confidence            345556677764      3679988873221     26999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeC
Q psy4487         174 IIAESRQEPQVELIVSRR  191 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~  191 (315)
                      +++.+.+.  |++.|.-.
T Consensus       190 ~l~~~~G~--itfkiiP~  205 (542)
T KOG0609|consen  190 LLRNSRGS--ITFKIIPS  205 (542)
T ss_pred             HHHhCCCc--EEEEEccc
Confidence            99999976  99888544

>KOG1028|consensus

Probab=97.81  E-value=3.6e-05  Score=77.32  Aligned_cols=47  Identities=26%  Similarity=0.325  Sum_probs=44.9

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      |.|.++|+|.+.                   +.+|.|.|++|++|..++.++.+|||||++|+++.
T Consensus       285 gel~~sL~Y~p~-------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~  331 (421)
T KOG1028|consen  285 GELLLSLCYLPT-------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD  331 (421)
T ss_pred             ceEEEEEEeecC-------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC
Confidence            899999999999                   99999999999999999999999999999999863

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.79  E-value=5.7e-05  Score=79.84  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEEC--C---EeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWN--G---RSMRGKSFQDVEDIIAESRQEPQVELI  187 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVN--G---~~l~g~t~~eav~iLk~s~~~~~V~Lv  187 (315)
                      .|+|+.+.-  +    +.+++|..|.+||||++++.|++||+|++||  |   +++.+++.++++.+|+...+. +|.|.
T Consensus       244 ~GIGa~l~~--~----~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt-~V~Lt  316 (667)
T PRK11186        244 EGIGAVLQM--D----DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGS-KVRLE  316 (667)
T ss_pred             eEEEEEEEE--e----CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCC-EEEEE
Confidence            577777642  1    1368999999999999986799999999999  4   356688999999999987764 59999


Q ss_pred             EEeC
Q psy4487         188 VSRR  191 (315)
Q Consensus       188 V~R~  191 (315)
                      |.|.
T Consensus       317 V~r~  320 (667)
T PRK11186        317 ILPA  320 (667)
T ss_pred             EEeC
Confidence            9874

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=97.74  E-value=8.1e-05  Score=61.88  Aligned_cols=44  Identities=32%  Similarity=0.531  Sum_probs=40.5

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      +|+|+++|.|+..                     .|.|+|++|++|+..+..+..||||++++.+
T Consensus         1 ~g~~~~~~~~~~~---------------------~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~   44 (131)
T cd04026           1 RGRIYLKISVKDN---------------------KLTVEVREAKNLIPMDPNGLSDPYVKLKLIP   44 (131)
T ss_pred             CcEEEEEEEECCC---------------------EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEc
Confidence            4899999999887                     8999999999999998888899999999976

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.68  E-value=0.00013  Score=72.97  Aligned_cols=61  Identities=26%  Similarity=0.512  Sum_probs=52.9

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++|+|++.| |++||.|++|||+.+.  +.+++.++|++.+....+.|.|.|...
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999877 9999999999999995  789999999876433459999988753

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.68  E-value=0.00014  Score=68.67  Aligned_cols=61  Identities=26%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|+.|..+.++++|++.| |+.||.|++|||+++.  +.+++.+++.+.....+++|.|.|+..
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            599999999999999887 9999999999999995  778888888886554569999999763

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.66  E-value=0.00014  Score=72.63  Aligned_cols=61  Identities=36%  Similarity=0.589  Sum_probs=51.9

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++|+|+++| |+.||+|++|||+.+.  ++.++..++........|.|.|.|+.
T Consensus       256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g  316 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKG  316 (428)
T ss_pred             CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            3689999999999999887 9999999999999995  77888888876544445999998865

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG0905|consensus

Probab=97.61  E-value=8.3e-05  Score=81.30  Aligned_cols=47  Identities=36%  Similarity=0.706  Sum_probs=44.5

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .++|.|+++|.|..+                     .|.|+|+.|++|+--.+|+-.|||||+|||||
T Consensus      1510 ~iggqV~LsIsY~~~---------------------~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPd 1556 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYNNG---------------------TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPD 1556 (1639)
T ss_pred             ccCceEEEEEEEcCc---------------------eEEEEhhhhcccccccCCCCCCcceeEEecCC
Confidence            778999999999877                     89999999999999999999999999999998

>PRK10139 serine endoprotease; Provisional

Probab=97.56  E-value=0.00022  Score=72.29  Aligned_cols=59  Identities=29%  Similarity=0.452  Sum_probs=52.1

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++++|++.| |++||.|++|||+.+  .++++..++|++...  .+.|.|.|...
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v--~~~~~~~~~l~~~~~--~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPA--IIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEc--CCHHHHHHHHHhCCC--eEEEEEEECCE
Confidence            589999999999999877 999999999999999  489999999987654  48999988753

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.56  E-value=0.00023  Score=69.70  Aligned_cols=60  Identities=30%  Similarity=0.520  Sum_probs=51.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|++.| |++||.|++|||+.+.  +++++.+.+........|.|.|.|+.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g  337 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG  337 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999877 9999999999999995  78888888876433345999998864

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10139 serine endoprotease; Provisional

Probab=97.56  E-value=0.00027  Score=71.63  Aligned_cols=61  Identities=30%  Similarity=0.446  Sum_probs=51.7

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++|+|+++| |+.||+|++|||+.+.  +++++...|.......++.|.|.|..
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G  349 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNG  349 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            3589999999999999877 9999999999999995  78999988876333235999998865

>TIGR00054 RIP metalloprotease RseP

Probab=97.55  E-value=0.00024  Score=71.15  Aligned_cols=60  Identities=27%  Similarity=0.455  Sum_probs=52.2

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .+++|..|.++++|+++| |++||+|++|||+++.  +++|+...++...+. .+.+.|.|+..
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~-~v~l~v~R~g~  262 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGK-SMDIKVERNGE  262 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC-ceEEEEEECCE
Confidence            478999999999999877 9999999999999995  789999999886553 38999988763

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10942 serine endoprotease; Provisional

Probab=97.50  E-value=0.00028  Score=71.83  Aligned_cols=59  Identities=25%  Similarity=0.489  Sum_probs=52.2

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++|+|++.| |++||.|++|||+.+.  +++++.++++....  .+.|.|.|...
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~--~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPS--VLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCC--eEEEEEEECCE
Confidence            589999999999999877 9999999999999995  78999999988654  49999998763

>PRK10898 serine endoprotease; Provisional

Probab=97.50  E-value=0.00034  Score=68.59  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=50.5

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|++.| |+.||+|++|||+.+.  ++++....|........+.|.|.|..
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g  338 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDD  338 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            699999999999999877 9999999999999994  67788777866433345999998864

>PRK10942 serine endoprotease; Provisional

Probab=97.49  E-value=0.00037  Score=71.00  Aligned_cols=62  Identities=26%  Similarity=0.390  Sum_probs=52.8

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++++|+++| |+.||+|++|||+.+.  +++++...+........+.|.|.|...
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~  371 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK  371 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCe
Confidence            3689999999999999877 9999999999999995  788888888775544458999988763

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.39  E-value=0.00059  Score=68.90  Aligned_cols=60  Identities=20%  Similarity=0.421  Sum_probs=51.5

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .+++|..|.++|+|+++| |++||+|++|||+.+.  +++++.+.++...+. .+.+.|.|+..
T Consensus       221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~-~v~l~v~R~g~  280 (449)
T PRK10779        221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGK-PLALEIERQGS  280 (449)
T ss_pred             cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCC-EEEEEEEECCE
Confidence            358999999999999877 9999999999999994  889999999875443 48999988763

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.29  E-value=0.00049  Score=69.47  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..+|+.|.++|||+++| |+.||.|++|||+.+.  ++++....+.......++.+.|.|+..
T Consensus       127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk  186 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGS  186 (449)
T ss_pred             CccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCc
Confidence            45799999999999887 9999999999999996  678888777666554569999998764

>KOG3938|consensus

Probab=97.27  E-value=0.00046  Score=65.34  Aligned_cols=72  Identities=26%  Similarity=0.435  Sum_probs=62.1

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      .+-||+.|.-     +|-.-+||.+|.+||.-++.-.+++||.|-+|||.++-|..|-||..+|++.+.....+|.+
T Consensus       136 edalGlTITD-----NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrL  207 (334)
T KOG3938|consen  136 EDALGLTITD-----NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRL  207 (334)
T ss_pred             ccccceEEee-----CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEe
Confidence            4689999973     34467999999999999999899999999999999999999999999999987764455443

>KOG3605|consensus

Probab=97.07  E-value=0.00048  Score=71.72  Aligned_cols=62  Identities=24%  Similarity=0.451  Sum_probs=54.8

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL  186 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~L  186 (315)
                      ---|||+|.-|.          |-++..||.|++ |.+++|.+|+||||+++....|+.++++|..+-++  |.+
T Consensus       748 kyQLGFSVQNGi----------ICSLlRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE--IhM  809 (829)
T KOG3605|consen  748 RYQLGFSVQNGI----------ICSLLRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE--IHM  809 (829)
T ss_pred             hhhccceeeCcE----------eehhhcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHHHHhhhh--hhh
Confidence            457999998764          889999999998 55999999999999999999999999999998876  544

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.90  E-value=0.0026  Score=54.83  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             CCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLA-GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       110 ~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~-GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      ++..-||++|.=-........++-|-+|.|+|||+++| |++ .|.|+.+++..+.  ..++..++++...+. ++.|.|
T Consensus        23 ~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~-~l~L~V   98 (138)
T PF04495_consen   23 GGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEANENK-PLQLYV   98 (138)
T ss_dssp             SSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS--EEEEE
T ss_pred             CCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHcCCC-cEEEEE
Confidence            45678899987444333456789999999999999988 887 6999999998887  456888888877664 488888


Q ss_pred             EeCCCC
Q psy4487         189 SRRIQP  194 (315)
Q Consensus       189 ~R~~~~  194 (315)
                      -.....
T Consensus        99 yns~~~  104 (138)
T PF04495_consen   99 YNSKTD  104 (138)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            655433

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR00054 RIP metalloprotease RseP

Probab=96.80  E-value=0.0028  Score=63.64  Aligned_cols=58  Identities=29%  Similarity=0.402  Sum_probs=49.7

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+++|..|.++|||+++| |+.||.|+++||+.+.  ++.++...+....+.  +.+.|.|+.
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~--v~~~I~r~g  185 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIAGE--PMVEILAER  185 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccc--ceEEEEEec
Confidence            578999999999999876 9999999999999994  778888888776644  888887764

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=96.66  E-value=0.0025  Score=55.62  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=32.8

Q ss_pred             cCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       278 ~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ......|.|+|++|++|++++..+.+||||+++|.++
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~   60 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPA   60 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEccc
Confidence            3446789999999999999999999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.58  E-value=0.0038  Score=63.02  Aligned_cols=49  Identities=33%  Similarity=0.424  Sum_probs=41.0

Q ss_pred             EEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487         134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS  189 (315)
Q Consensus       134 Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~  189 (315)
                      |..|.|+|+|+++| |++||+|++|||+.+.  ++.++...+..  .  .+.|.|.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~~--e--~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCAD--E--ELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhcC--C--cEEEEEE
Confidence            77899999999887 9999999999999994  78887777742  2  3888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG1013|consensus

Probab=96.52  E-value=0.0027  Score=61.83  Aligned_cols=49  Identities=27%  Similarity=0.353  Sum_probs=45.9

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..+|.|.++|.|++.                   +..|.|+++.|..|...|.++.+||||+.||-||
T Consensus       217 E~rg~i~isl~~~s~-------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pd  265 (362)
T KOG1013|consen  217 EERGAILISLAYSST-------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPD  265 (362)
T ss_pred             hhccceeeeeccCcC-------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCC
Confidence            456899999999999                   8899999999999999999999999999999987

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.50  E-value=0.012  Score=58.97  Aligned_cols=71  Identities=23%  Similarity=0.530  Sum_probs=53.1

Q ss_pred             CCCccceEEEcCcCCCCCCCCeEEEee--------cCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCC
Q psy4487         111 ASSTLGIKVIGGKLLEDGTRGAIIEKV--------KKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP  182 (315)
Q Consensus       111 ~~~gLGfsIvGGk~~~~g~~gi~Is~V--------~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~  182 (315)
                      ++..+|+.+.-        .|++|-..        ..++||+.+| |+.||.|++|||..+.  +++|+.++++...+. 
T Consensus        94 gG~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~-  161 (402)
T TIGR02860        94 GGQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGE-  161 (402)
T ss_pred             CCEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC-
Confidence            45667776631        25555332        2368999766 9999999999999995  889999999887653 


Q ss_pred             cEEEEEEeCCC
Q psy4487         183 QVELIVSRRIQ  193 (315)
Q Consensus       183 ~V~LvV~R~~~  193 (315)
                      .+.|.|.|+..
T Consensus       162 ~V~LtV~R~Ge  172 (402)
T TIGR02860       162 KLTLTIERGGK  172 (402)
T ss_pred             eEEEEEEECCE
Confidence            48999988753

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=96.07  E-value=0.0094  Score=50.60  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487         281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL  312 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll  312 (315)
                      -..|.|+|++|++|++.+..+.+||||++++.
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~   45 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG   45 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC
Confidence            56899999999999999988999999999874

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>KOG0606|consensus

Probab=96.07  E-value=0.018  Score=63.53  Aligned_cols=83  Identities=25%  Similarity=0.356  Sum_probs=63.5

Q ss_pred             EEEEeccCCCCCCCCCccceEE------EcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKV------IGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsI------vGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .|++++.       +.+|||.+      +|+++.-.  .--.|..|.+|++|...| |++||.|+.|||..+.++.|.|+
T Consensus       629 pI~i~~~-------~~~yGft~~airVy~Gd~d~yt--vhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev  698 (1205)
T KOG0606|consen  629 PITIHFS-------GKKYGFTLRAIRVYMGDKDVYT--VHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEV  698 (1205)
T ss_pred             ceeeecc-------ccccCceeeeEEEecCCcccce--eeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHH
Confidence            3555554       47888764      37766322  123589999999998766 99999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeCC
Q psy4487         172 EDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~~  192 (315)
                      +++|.+.+..  |.+.+.--.
T Consensus       699 ~~Lll~~gn~--v~~~ttple  717 (1205)
T KOG0606|consen  699 MELLLKSGNK--VTLRTTPLE  717 (1205)
T ss_pred             HHHHHhcCCe--eEEEeeccc
Confidence            9999988765  666654433

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.02  E-value=0.028  Score=54.69  Aligned_cols=62  Identities=24%  Similarity=0.388  Sum_probs=54.2

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      .|+|+..+..+++|.  |.|..||.|++|||+.+.  +.+|.+..++..+-..+|++.++|.....
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~  191 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNETP  191 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCCC
Confidence            589999999999998  889999999999999995  88999999988766566999999866544

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.028  Score=54.51  Aligned_cols=60  Identities=33%  Similarity=0.500  Sum_probs=51.7

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..|++|..|.+++||++.| ++.||.|+++||..+.  +..+....+........+.+.+.|+
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~  328 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRG  328 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEEC
Confidence            4579999999999999887 9999999999999995  7778888787766555699999888

>KOG3129|consensus

Probab=95.82  E-value=0.025  Score=52.06  Aligned_cols=65  Identities=25%  Similarity=0.389  Sum_probs=48.3

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC-HHHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS-FQDVEDIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t-~~eav~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ..-++|..|.|+|||+.+| |+.||+|+.+..+.-.+.. +..+....+...+.. |.+.|.|.....
T Consensus       138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~-v~v~v~R~g~~v  203 (231)
T KOG3129|consen  138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQI-VSVTVIREGQKV  203 (231)
T ss_pred             cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcc-eeEEEecCCCEE
Confidence            3468999999999999766 9999999999887665544 556666666555532 777887776543

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.64  E-value=0.032  Score=53.44  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=42.4

Q ss_pred             eecCCChhc--ccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         136 KVKKGSPAD--LEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       136 ~V~pGgpA~--~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +|.||..++  ...+|+.||.+++|||.++.  .-+++.+++++.....++.|.|+|+..
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq  267 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGA  267 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCE
Confidence            455665442  23449999999999999997  556777777777776779999999864

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=95.55  E-value=0.025  Score=45.29  Aligned_cols=61  Identities=25%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             CCeEEEeecCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKG--------SPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pG--------gpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .+..|.+|.+|        ||..+-| .+++||.|++|||+.+.  .-.....+|.+..+ .+|.|.|.+...
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~ag-k~V~Ltv~~~~~   81 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAG-KQVLLTVNRKPG   81 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTT-SEEEEEEE-STT
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCC-CEEEEEEecCCC
Confidence            46789999987        4444433 46699999999999996  33456777777655 359999988654

>KOG1738|consensus

Probab=95.30  E-value=0.023  Score=59.29  Aligned_cols=76  Identities=26%  Similarity=0.405  Sum_probs=64.1

Q ss_pred             CCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE-
Q psy4487         110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV-  188 (315)
Q Consensus       110 ~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV-  188 (315)
                      +...|||+-|----     +..-+|+.+.++++|+....|..||+|++||+.-+.+..+.-+++.++.....  |.++| 
T Consensus       210 kp~eglg~~I~Ssy-----dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sg--i~l~lk  282 (638)
T KOG1738|consen  210 SPSEGLGLYIDSSY-----DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAG--IELTLK  282 (638)
T ss_pred             CcccCCceEEeeec-----CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccc--ceeeee
Confidence            45679999987433     34678999999999999999999999999999999999999999999998876  77666 


Q ss_pred             EeCC
Q psy4487         189 SRRI  192 (315)
Q Consensus       189 ~R~~  192 (315)
                      .|..
T Consensus       283 Krp~  286 (638)
T KOG1738|consen  283 KRPV  286 (638)
T ss_pred             ccCC
Confidence            4444

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=95.17  E-value=0.025  Score=41.91  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.7

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         284 LVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       284 L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      |.|+|++|++|+.++..+..+|||++++..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~   30 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNG   30 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEET
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecce
Confidence            789999999999988888999999999875

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04032 C2_Perforin C2 domain of Perforin

Probab=94.75  E-value=0.046  Score=46.20  Aligned_cols=31  Identities=23%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487         281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL  312 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll  312 (315)
                      ..+|.|+|++|++|+. +..+..|||||+++.
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~   57 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG   57 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC
Confidence            5689999999999984 566778999999973

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>KOG1328|consensus

Probab=94.20  E-value=0.038  Score=58.82  Aligned_cols=41  Identities=24%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             eeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         274 KFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       274 ~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .-+|+.|...|+|-|+.|+++.|-|.+|.+||||-|-|+|.
T Consensus       939 r~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~  979 (1103)
T KOG1328|consen  939 RAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK  979 (1103)
T ss_pred             EEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccc
Confidence            33333448999999999999999999999999999999985

>KOG1421|consensus

Probab=93.52  E-value=0.16  Score=54.04  Aligned_cols=79  Identities=27%  Similarity=0.429  Sum_probs=57.4

Q ss_pred             CCCCccceE-----EEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcE
Q psy4487         110 SASSTLGIK-----VIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV  184 (315)
Q Consensus       110 ~~~~gLGfs-----IvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V  184 (315)
                      +....||++     ++=-++ .....=.+|..|.++|+|+.  .|++||.++.||++.+  ..+.++.++|.+.-+. .+
T Consensus       279 de~rrlGL~sE~eqv~r~k~-P~~tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l--~df~~l~~iLDegvgk-~l  352 (955)
T KOG1421|consen  279 DECRRLGLSSEWEQVVRTKF-PERTGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCL--NDFEALEQILDEGVGK-NL  352 (955)
T ss_pred             HHHHhcCCcHHHHHHHHhcC-cccceeEEEEEeccCCchhh--ccCCCcEEEEEcceeh--HHHHHHHHHHhhccCc-eE
Confidence            445678876     221122 22223467889999999995  4999999999999888  4778888888776553 49


Q ss_pred             EEEEEeCCCC
Q psy4487         185 ELIVSRRIQP  194 (315)
Q Consensus       185 ~LvV~R~~~~  194 (315)
                      +|.|.|....
T Consensus       353 ~LtI~Rggqe  362 (955)
T KOG1421|consen  353 ELTIQRGGQE  362 (955)
T ss_pred             EEEEEeCCEE
Confidence            9999998754

>KOG3532|consensus

Probab=93.46  E-value=0.18  Score=53.57  Aligned_cols=61  Identities=20%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       127 ~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+...+-|..|.++++|+++. +++||.+++|||+++.  +-.++...++...+.  |..++.|..
T Consensus       395 ~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~--~~~l~~~~~  455 (1051)
T KOG3532|consen  395 NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGD--LTVLVERSL  455 (1051)
T ss_pred             CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccc--eEEEEeecc
Confidence            345678899999999999866 9999999999999995  888999999998876  887777755

>KOG1320|consensus

Probab=93.33  E-value=0.24  Score=50.81  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=50.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .+++|..|+++++|+. +.+..||+|+.|||+.+.  ...++.++|..+....+|.++..|....
T Consensus       398 q~v~is~Vlp~~~~~~-~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~  459 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGG-YGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAED  459 (473)
T ss_pred             eEEEEEEeccCCCccc-ccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccc
Confidence            4799999999999995 559999999999999996  4567888998887655577766665533

>KOG1013|consensus

Probab=92.82  E-value=0.037  Score=54.10  Aligned_cols=49  Identities=31%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +.+|.+.+.+.|+..                   ...|..+|..|.+|.|++.++..|||||+.|||-
T Consensus        77 t~lg~~~~~~~y~~~-------------------~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpg  125 (362)
T KOG1013|consen   77 TTLGALEFELLYDSE-------------------SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPG  125 (362)
T ss_pred             hhccchhhhhhhhhh-------------------hhhcceeechhcccchhhhhhhcchHHhhhcccc
Confidence            366889999999988                   8889999999999999999999999999999984

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=92.67  E-value=0.057  Score=55.67  Aligned_cols=43  Identities=35%  Similarity=0.415  Sum_probs=35.8

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGR  161 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~  161 (315)
                      ...||+++.-  +    .....|+.|.++|||..+| |.+||+|+.|||.
T Consensus       450 ~~~LGl~v~~--~----~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         450 AYYLGLKVKS--E----GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             CcccceEecc--c----CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            3578888752  1    1257899999999999988 9999999999999

>KOG4407|consensus

Probab=92.09  E-value=0.15  Score=57.36  Aligned_cols=55  Identities=24%  Similarity=0.442  Sum_probs=49.2

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      -|||..|.+.++|+... |+.||+|+.||...+.++.+.+++.+|++....  +.+.|
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~--~~~~~  198 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAV--LTLHV  198 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCC--CCcee
Confidence            48999999999999765 999999999999999999999999999998866  55554

>KOG2060|consensus

Probab=91.22  E-value=0.2  Score=49.76  Aligned_cols=45  Identities=33%  Similarity=0.537  Sum_probs=36.1

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd  314 (315)
                      -|+||+.++-..+                     .|.|-|+.|++|.++.- +....||||+|||+.
T Consensus       257 mg~iq~~~~d~~g---------------------~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~  302 (405)
T KOG2060|consen  257 MGDIQIALMDSKG---------------------DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLEN  302 (405)
T ss_pred             cccchhhhhcccC---------------------ceeEEEEecccccccCCcccccCceeEEEEcCC
Confidence            4778887775444                     89999999999988764 336799999999984

>KOG1945|consensus

Probab=90.51  E-value=0.21  Score=49.21  Aligned_cols=72  Identities=19%  Similarity=0.345  Sum_probs=61.2

Q ss_pred             CCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC
Q psy4487         110 SASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE  181 (315)
Q Consensus       110 ~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~  181 (315)
                      ++..|+|+.+.|   |++..-...+|++.+..+|+.-++.|...+-|.+.++.+..+..+.+....++.+.+-..
T Consensus       107 ~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~  181 (377)
T KOG1945|consen  107 KGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSR  181 (377)
T ss_pred             CCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhc
Confidence            445788888777   444455678999999999999999999999999999999999999999999988777654

>KOG4371|consensus

Probab=90.09  E-value=0.36  Score=53.41  Aligned_cols=84  Identities=25%  Similarity=0.463  Sum_probs=65.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      +|..|+|.+..       .++|+.+.-...    ..|+||..+...+.|...|.++.||++...+|.++.+.+-....+.
T Consensus      1246 l~~~~~~~~p~-------~~~~~~~~~~~~----s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~ 1314 (1332)
T KOG4371|consen 1246 LISVMLLKKPM-------ATLGLSLAKRTM----SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEK 1314 (1332)
T ss_pred             hhhheeeeccc-------ccccccccccCc----CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHH
Confidence            34445555543       678888775433    4689999999999999999999999999999999999998888888


Q ss_pred             HHhcCCCCcEEEEEEeC
Q psy4487         175 IAESRQEPQVELIVSRR  191 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~  191 (315)
                      ++-..+.  |.|.+.|.
T Consensus      1315 ~~~v~~p--~~~~~~~~ 1329 (1332)
T KOG4371|consen 1315 LKLVQGP--VQITVTRE 1329 (1332)
T ss_pred             hhhccCc--hhheehhh
Confidence            8766555  66666654

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=89.29  E-value=0.95  Score=42.79  Aligned_cols=63  Identities=27%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .-+|+++.-|++               ++.-+..| |+.||..+++|+.+++  .-+++..+++.......+.|+|.|+.
T Consensus       205 ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G  266 (275)
T COG3031         205 KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRG  266 (275)
T ss_pred             ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecC
Confidence            567777766654               33445455 9999999999999995  55666677776666566899998876


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus       267 ~  267 (275)
T COG3031         267 K  267 (275)
T ss_pred             c
Confidence            3

>PF12812 PDZ_1: PDZ-like domain

Probab=86.79  E-value=2.4  Score=33.03  Aligned_cols=47  Identities=21%  Similarity=0.298  Sum_probs=38.5

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ  180 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~  180 (315)
                      +.++.....|+++.. +.+..|-.|.+|||+++.  +.++.++++++.++
T Consensus        31 ~gv~v~~~~g~~~~~-~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd   77 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFA-GGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD   77 (78)
T ss_pred             CEEEEEecCCChhhh-CCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence            456667788899884 559999999999999995  77888888887654

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=84.21  E-value=3.5  Score=39.98  Aligned_cols=56  Identities=25%  Similarity=0.509  Sum_probs=46.3

Q ss_pred             eEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCC--cEEEEEEe
Q psy4487         132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP--QVELIVSR  190 (315)
Q Consensus       132 i~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~--~V~LvV~R  190 (315)
                      .++..+..+++|...+ +++||+++++|+..+  .+++++...+.......  .+.+.+.|
T Consensus       131 ~~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         131 PVVGEVAPKSAAALAG-LRPGDRIVAVDGEKV--ASWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             CeeeecCCCCHHHHcC-CCCCCEEEeECCEEc--cCHHHHHHHHHhccCCcccceEEEEEe
Confidence            4466899999999887 999999999999999  48888888887766653  26777788

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
1wfg_A	131	Pdz Domain Of Human Rim2b Length = 131		2e-26
1zub_A	114	Solution Structure Of The Rim1alpha Pdz Domain In C		2e-26
2css_A	121	Solution Structure Of The Pdz Domain Of Human Kiaa0		2e-24
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		1e-08
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		2e-06
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		2e-06
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		2e-04
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		2e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		3e-04
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		4e-04
1ihj_A	98	Crystal Structure Of The N-Terminal Pdz Domain Of I		6e-04

>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b Length = 131

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 82  HPLSWKPSADGKYMIGHMILRK---SGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVK 138
           HP++W+PS DG  +IG ++L K    G     + + LG+KV+GGK+ E G   A I KVK
Sbjct: 14  HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVK 73
Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           KGS AD  GHL  GD+V+EWNGR ++G +F++V +II ES+ EPQVEL+VSR
Sbjct: 74  KGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125

>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex With An Elks1b C-Terminal Peptide Length = 114

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 81  AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
           +HP++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKG
Sbjct: 5   SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 64
Query: 141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR
Sbjct: 65  SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 114

>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340 Protein Length = 121

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 78/111 (70%)
Query: 84  LSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPA 143
           ++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKGS A
Sbjct: 8   VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLA 67
Query: 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
           D+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR   P
Sbjct: 68  DVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPSGP 118

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 90  ADGKYMIGHM---ILRKSGDRYPSASSTLGIKVIGGKLL--EDGTRGAIIEKVKKGSPAD 144
           + G Y+  H    I R S D   S +  LGI+++GGK +    G  GA I K+  G  A+
Sbjct: 5   SSGHYIFPHARIKITRDSKDHTVSGNG-LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAE 63
Query: 145 LEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
             G L+ G QV+EWNG  +  K++++V+ II++   E ++
Sbjct: 64  QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           S+K + D    +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct: 11  SIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 54

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           S+K + D    +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct: 8   SIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 51

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
           S+ LG  ++GG   EDG  G  +  +  G PADL G L  GDQ++  NG  +RG S
Sbjct: 13  STGLGFNIVGG---EDG-EGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGAS 64

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           S+ LG  ++GG   EDG  G  I  +  G PADL G L  GDQ++  NG  +R  S +
Sbjct: 317 STGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 370

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 110 SASSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           S S+ LG+ V G +  E+    G  ++ +  G  A  +G L   DQ+I  NG S+ GK+ 
Sbjct: 18  SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 77
Query: 169 QDVEDII-----AESRQEPQVELIVSRRI 192
           Q+  + +      E  +   ++LIV+RRI
Sbjct: 78  QEAMETLRRSMSTEGNKRGMIQLIVARRI 106

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            S+ LG  +IGG   EDG  G  I  +  G PADL G L  GDQ++  NG  +R  S +
Sbjct: 23  GSTGLGFNIIGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 110 SASSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           S S+ LG+ V G +  E+    G  ++ +  G  A  +G L   DQ+I  NG S+ GK+ 
Sbjct: 15  SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 74
Query: 169 QDVEDII-----AESRQEPQVELIVSRRI 192
           Q+  + +      E  +   ++LIV+RRI
Sbjct: 75  QEAMETLRRSMSTEGNKRGMIQLIVARRI 103

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            S+ LG  ++GG   EDG  G  I  +  G PADL G L  GDQ++  NG  +R  S +
Sbjct: 23  GSTGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77

>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In Complex With A Norpa C-Terminal Peptide Length = 98

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 95  MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLA 151
           M G +I   + D+  +   + GI ++ G++ +     T G  I+ +   SPA L G L  
Sbjct: 1   MAGELIHMVTLDK--TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKV 58
Query: 152 GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           GD+++  NG+ +R  + Q V D+I E+  + ++E+
Sbjct: 59  GDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-32
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	1e-21
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-14
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	5e-13
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-13
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-12
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	3e-12
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-12
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	4e-12
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	5e-12
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	6e-12
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	6e-12
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-12
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	7e-12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-12
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	4e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	7e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-11
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-11
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-09
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-11
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-11
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-11
2fne_A	117	Multiple PDZ domain protein; structural protein, s	3e-11
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-11
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-11
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	4e-11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	5e-11
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	5e-11
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	5e-11
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-11
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	5e-11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	6e-11
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	6e-11
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	8e-11
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	8e-11
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	9e-11
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-10
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-10
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-10
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-10
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-10
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-10
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-10
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-10
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	3e-10
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	3e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-10
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	3e-10
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	4e-10
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	4e-10
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	4e-10
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	4e-10
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	4e-10
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	4e-10
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	5e-10
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	6e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	6e-10
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	9e-10
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-09
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-09
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-09
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-09
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-09
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-09
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-09
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-09
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-09
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-09
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-09
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-09
2awx_A	105	Synapse associated protein 97; membrane protein, s	3e-09
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-09
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-09
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-09
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	5e-09
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	5e-09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	5e-09
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	5e-09
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	6e-09
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	6e-09
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	7e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	7e-09
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	7e-09
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	8e-09
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	9e-09
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	9e-09
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-08
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-08
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-08
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-08
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-08
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-08
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-08
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-08
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-08
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	3e-08
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-08
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	3e-08
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	4e-08
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	4e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	4e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	7e-05
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	4e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	5e-08
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	5e-08
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	5e-08
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	6e-08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	6e-08
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	7e-08
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	7e-08
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-08
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	8e-08
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	9e-08
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	1e-07
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-07
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	1e-07
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	1e-07
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-07
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	1e-07
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-07
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-07
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-07
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	2e-07
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-07
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-07
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-07
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-07
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	3e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-07
2ego_A	96	General receptor for phosphoinositides 1- associat	3e-07
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-07
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	5e-07
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	5e-07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	6e-07
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	6e-07
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	6e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	8e-07
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-06
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	1e-06
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-06
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-06
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-06
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	3e-06
3khf_A	99	Microtubule-associated serine/threonine-protein ki	3e-06
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-06
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	3e-06
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	6e-06
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	7e-06
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	8e-06
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	9e-06
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-05
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	2e-05
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-05
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	6e-05
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	7e-05
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	7e-05
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	7e-05
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	9e-05
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	9e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	1e-04
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-04
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	1e-04
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	2e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	2e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	2e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	6e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	3e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	5e-04
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-04
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-04
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-04
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	5e-04
4fgm_A	597	Aminopeptidase N family protein; structural genomi	5e-04
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	5e-04
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	5e-04
2kl1_A	94	YLBL protein; structure genomics, structural genom	6e-04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	8e-04

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score =  116 bits (291), Expect = 2e-32
 Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 82  HPLSWKPSADGKYMIGHMILRKSGDR---YPSASSTLGIKVIGGKLLEDGTRGAIIEKVK 138
           HP++W+PS DG  +IG ++L K          + + LG+KV+GGK+ E G   A I KVK
Sbjct: 14  HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVK 73

Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
           KGS AD  GHL  GD+V+EWNGR ++G +F++V +II ES+ EPQVEL+VSR    
Sbjct: 74  KGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 88  PSADGKYMIGHMI--LRKSGDRYPSASSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPA 143
             + G Y+  H    + +    +  + + LGI+++GGK      G  GA I K+  G  A
Sbjct: 3   SGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSA 62

Query: 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
           +  G L+ G QV+EWNG  +  K++++V+ II++   E   E+ V   +  
Sbjct: 63  EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE--AEICVRLDLNM 111

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S  G +++GG    +  +  +I  V     AD +G L  GD+++  +G  + GK+ + V
Sbjct: 19  ESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75

Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
            D++  + +  QV L V R++   
Sbjct: 76  IDLMHHAARNGQVNLTVRRKVLSG 99

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +  LG  +    +   G+    ++ +     A  +G L AGD++IE NG  + GKS ++V
Sbjct: 21  TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
             ++  ++ E  V L+V R+ + 
Sbjct: 81  VSLLRSTKMEGTVSLLVFRQEEA 103

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +  G +++GG    +      I  +     AD +G L +GD++I  +G  + GKS Q V
Sbjct: 12  ETGFGFRILGGN---EPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLV 68

Query: 172 EDIIAESRQEPQVELIVSRR 191
             ++ ++ ++  V L V + 
Sbjct: 69  VQLMQQAAKQGHVNLTVRQT 88

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGIK++          G  I  + +G  A  +G L + D+V+  NG  ++  + +    I
Sbjct: 18  LGIKLVRRT----DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQI 73

Query: 175 IAESRQEPQVELIVSRRIQP 194
           I  S +   V L ++R  +P
Sbjct: 74  IQASGER--VNLTIARPGKP 91

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           P  S   G  +           G  +  V+ GSPA+    L   D++I  N         
Sbjct: 13  PGKSLDFGFTIKWDI------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDS 65

Query: 169 QDVEDIIAESRQEPQVELIVSR 190
           ++ E+ +A++++   + + V R
Sbjct: 66  KEWEEAMAKAQETGHLVMDVRR 87

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            +  GI++ G     +       I  ++  SPA+  G L  GD+V+  NG      +F++
Sbjct: 26  VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85

Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAPT 199
              ++ +S    +V L +   +     P+
Sbjct: 86  ANQLLRDSSITSKVTLEIEFDVAESVIPS 114

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +  LG  +    +   G+    ++ +     A  +G L AGD++IE NG  + GKS ++V
Sbjct: 40  TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEV 99

Query: 172 EDIIAESRQEPQVELIVSRR 191
             ++  ++ E  V L+V R+
Sbjct: 100 VSLLRSTKMEGTVSLLVFRQ 119

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +G+ ++  K       G  ++ V KG  AD++G L AGDQ++  +GRS+ G S +   ++
Sbjct: 23  MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82

Query: 175 IAESRQEPQVELIVSRR 191
           +  +     V L V+++
Sbjct: 83  MTRTSSV--VTLEVAKQ 97

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG  + GG   +   +   + +V     A  EG +  G++V+  NG+S++G +  D 
Sbjct: 26  GAGLGFSLAGGA--DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 83

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
             I+ ++R+  Q  ++  +          S
Sbjct: 84  LAILRQAREPRQAVIVTRKLTPEAMPDLNS 113

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +L + + GG     G    ++  V +G  A+  G ++ GD+++  NG+ +   +  + 
Sbjct: 27  EGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84

Query: 172 EDIIAESRQEP--QVELIVSRRIQPKY 196
           E  + ++  +    ++L+V+     +Y
Sbjct: 85  EAALQKAWNQGGDWIDLVVAVCPPKEY 111

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ ++G +       G  +  + KG  AD +G L+ GDQ++  NG  +R  + + V  +
Sbjct: 18  LGLSIVGKR----NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAAL 73

Query: 175 IAESRQEPQVELIVSRR 191
           +  S     V L V R 
Sbjct: 74  LKCSLGT--VTLEVGRI 88

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 112 SSTLGIKVIGGK-LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            +T G  + GG     + +R  +I  V+ G PAD EG +  GD+++  +G  + G +  +
Sbjct: 13  GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 72

Query: 171 VEDIIAESRQEPQVELIVSRRIQP 194
              I+ +  QE    L++   +  
Sbjct: 73  AMSILKQCGQE--AALLIEYDVSE 94

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 62.5 bits (152), Expect = 7e-12
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 112 SSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              LG  + GG   +   G     + K+ +G  A  +G L  GD+++  N   +     +
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 169

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPK 195
           D    +  +     V L V++    +
Sbjct: 170 DAVAALKNTYDV--VYLKVAKPSNAE 193

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +S LG  + GG             I K+  G  A  +G L   D ++  N   +R  +  
Sbjct: 15  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKY 196
              + + E+     V L V RR  P  
Sbjct: 75  AAVEALKEAGS--IVRLYVMRRKPPAE 99

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 61.0 bits (148), Expect = 7e-12
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 83  PLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAI-IEKVKKGS 141
                     + +   + L  SG      S+ LG+ + G K  E GT   I I+ +  G 
Sbjct: 13  DCYALSLESSEQLTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGG 66

Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQ-----VELIVSRRIQPKY 196
            A  +G L   DQ+I  NG ++ GKS  +  + +  S          ++L++ RR  P  
Sbjct: 67  AAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126

Query: 197 A 197
            
Sbjct: 127 G 127

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 62.1 bits (151), Expect = 9e-12
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI +      + G    +I  +KKGS A   G L  GD+++  +   +   S +D   I
Sbjct: 121 LGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQI 179

Query: 175 IAESRQEPQVELIVSR 190
           + +      V+L + +
Sbjct: 180 LQQCEDL--VKLKIRK 193

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            +  GI++ G     +       I  ++  SPA+  G L  GD+V+  NG      +F++
Sbjct: 17  VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 76

Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAP 198
              ++ +S    +V L +   +     P
Sbjct: 77  ANQLLRDSSITSKVTLEIEFDVAESVIP 104

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 112 SSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            +T G  + GG   + + +R  +I  V+ G PAD EG +  GD+++  +G  + G +  +
Sbjct: 116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 175

Query: 171 VEDIIAESRQEPQVELIVSRRIQ 193
              I+ +  QE    L++   + 
Sbjct: 176 AMSILKQCGQE--ATLLIEYDVS 196

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +TLG+ V GG    D      +  +++G  A     L  GD +   NG ++      ++
Sbjct: 18  GTTLGLTVSGGI---DKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEI 74

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAP 198
             ++    +  +V L V   + P    
Sbjct: 75  ISLLKNVGE--RVVLEVEYELPPVSIQ 99

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S   G  V+GG    +      I+ +    PA L+G +  GD ++  N   + G +   V
Sbjct: 10  SRGFGFTVVGGD---EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 66

Query: 172 EDIIAESRQEPQVELIVSR 190
             I         V+L + R
Sbjct: 67  VKIFQSIPIGASVDLELCR 85

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
              LGI + G    +      I ++ + K S  + +G +  GDQ+I  +G +++G + Q 
Sbjct: 14  VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQ 73

Query: 171 VEDIIAESRQEPQVELIVSRRIQP 194
             +++  + Q   V L + RR + 
Sbjct: 74  AVEVLRHTGQT--VLLTLMRRGET 95

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +  S LGI +    L         I+++K  S  D  G L  GD ++  +G SM   S  
Sbjct: 24  TPGSALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL 81

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
           +   ++A   ++  V L +    Q +     S
Sbjct: 82  EATKLLASISEK--VRLEILPVPQSQRPLRPS 111

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  ++GG+       G  I  +  G PADL G L  GDQ++  NG  +R  S +  
Sbjct: 21  STGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 76

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDK 211
              +  + Q   V +I   +           + Y R   K
Sbjct: 77  AIALKNAGQT--VTIIAQYK----------PEEYSRFEAK 104

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LG  ++GG     G     ++ V     A  +G L  GDQ+I  NG+S+ G + ++ 
Sbjct: 35  PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA 94

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
             I+  ++    V L+V    + 
Sbjct: 95  VAILKRTKGT--VTLMVLSSDET 115

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
           A   LG+ +   +       G  I  + +G   +++  L  GD + ++NG ++ G  FQ 
Sbjct: 18  AGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71

Query: 171 VEDIIAESRQEPQVELIVSRR 191
              +   +  +  V + V+R 
Sbjct: 72  SYALFKGANGK--VSMEVTRP 90

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LGI + GGK   +     +I ++  G PAD  G L  GD ++  NG ++R    ++ 
Sbjct: 20  HEGLGISITGGK---EHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 76

Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
             I+++ R E  +E  V       +
Sbjct: 77  VTILSQQRGE--IEFEVVYVALEHH 99

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            ++LGI V GG        G  ++ V     A+ +G +  GD+V+  NG S+ G + +  
Sbjct: 15  DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
            + +  + Q   V L++ +   P
Sbjct: 75  VETLRNTGQV--VHLLLEKGQSP 95

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  V             II  + +G  A+  G + AGD ++  N R +   S+    ++
Sbjct: 22  LGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSP 222
           +     E  V LI+     P+   T  +  +       ++ VT P  P
Sbjct: 78  LRGIASETHVVLILRG---PEGFTTHLETTFTGDGTPKTIRVTQPLGP 122

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  V  G       +G  ++ ++   P DL G L   D++++ N    R      V  +
Sbjct: 21  FGFSVADGL----LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPL 75

Query: 175 IAESRQEPQVELIVSRR 191
           IAES    +++L++SR 
Sbjct: 76  IAES--GNKLDLVISRN 90

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 112 SSTLGIKVIGGKLLEDGTR------GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           + +LGI ++GG+ +    +      G  I++V + SPA     L  GD+++E +G  ++ 
Sbjct: 26  NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQ-PKYAP 198
            S  +  + I  +     V  IV      P+  P
Sbjct: 86  ASHSEAVEAIKNAGNP--VVFIVQSLSSTPRVIP 117

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            S LG  ++GG          G  + ++K+   A L+G L  GD+++  NG+ ++    Q
Sbjct: 17  PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 76

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
           D  D+   +     V L V  R++ 
Sbjct: 77  DAVDLFRNAGYA--VSLRVQHRLES 99

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  ++GG+       G  +  +  G PADL G L  GD+++  NG ++R  + +  
Sbjct: 25  STGLGFNIVGGE----DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQA 80

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
              +  + Q   V ++   R + 
Sbjct: 81  AAALKRAGQS--VTIVAQYRPEE 101

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG+ ++GG   +      II +V +   A  +G L AGDQ++E NG  +R  +  + 
Sbjct: 14  RTGLGLSIVGGS--DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEA 71

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTL 200
            +++ ++ Q   V L + R   P  +  L
Sbjct: 72  INVLRQTPQR--VRLTLYRDEAPYKSTRL 98

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
           A   LG+ +   +       G  I  + +G   +++  L  GD + ++NG ++ G  FQ 
Sbjct: 12  AGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65

Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAPT 199
              +   +  +  V + V+R         
Sbjct: 66  CYALFKGANGK--VSMEVTRPKPGSGGSG 92

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  + GGK    G +   I ++ KG+ ++    +  GD++++  G +M+G +  + 
Sbjct: 39  SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKD 203
            +II      P V +++ R+       T + D
Sbjct: 99  WNIIKALPDGP-VTIVIRRKSLQSKETTAAGD 129

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +   G  +IGG    +      ++ V    PA  +G +  GD ++  N   + G +  DV
Sbjct: 29  NMGFGFTIIGGD---EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADV 85

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
             +         V L++ R     + P 
Sbjct: 86  VKLFQSVPIGQSVNLVLCRGYPLPFDPE 113

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LGI + G +   +     II  + KG  A+  G +  GD+++  N  S++GK   + 
Sbjct: 15  GGPLGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 71

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
             ++  + +   V L + ++   + A +
Sbjct: 72  IHLLQMAGET--VTLKIKKQTDAQPASS 97

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  ++GG+       G  I  +  G PADL G L  GDQ++  NG  +R  S +  
Sbjct: 24  STGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 79

Query: 172 EDIIAESRQEPQVELIVSRR 191
              +  + Q   V +I   +
Sbjct: 80  AIALKNAGQT--VTIIAQYK 97

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S   G  V+GG    +      I+ +    PA L+G +  GD ++  N   + G +   V
Sbjct: 28  SRGFGFTVVGGD---EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 84

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
             I         V+L + R     + P 
Sbjct: 85  VKIFQSIPIGASVDLELCRGYPLPFDPD 112

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVIGGKLLED-----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
           S +LG  +IGG+   D      + G  + K+    PA  EG L   D++IE NGR +   
Sbjct: 18  SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
           +     +    +++   + + V RR   
Sbjct: 78  THDQAVEAFKTAKEP--IVVQVLRRTSG 103

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +LG+ V GG    +      +  V+ G     +G +  GD ++  +G  +   S  + 
Sbjct: 35  GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEA 94

Query: 172 EDIIAESRQEPQVELIVSRRIQ 193
             ++  +     + L      +
Sbjct: 95  VALLKRTSSS--IVLKALEVKE 114

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI + GG     G     I  +     A     L  GD+++   G S  G +     ++
Sbjct: 38  LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNL 97

Query: 175 IAESRQEPQVELIVSRRIQP 194
           +  +     +E+ V      
Sbjct: 98  LKNASGS--IEMQVVAGGDV 115

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LG  ++GGK   +      I +V  G  AD  G L  GDQ++  NG S+ G+  +  
Sbjct: 15  DEGLGFNIMGGK---EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKA 71

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
            +++  ++    V+L+V      
Sbjct: 72  VELLKAAQGS--VKLVVRSGPSS 92

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  V             II  + +G  A+  G + AGD ++  N R +   S+    ++
Sbjct: 15  LGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
           +     E    +++  R    +   L 
Sbjct: 71  LRGIASE--THVVLILRGPEGFTTHLE 95

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +S LG  + GG          G  I K+  G  A ++G L   D V+  N   +      
Sbjct: 14  NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
              + + E+     V L+V RR  P
Sbjct: 74  RAVEALKEAGPV--VRLVVRRRQPP 96

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LGI + GGK   +     +I ++  G PAD  G L  GD ++  NG ++R    ++ 
Sbjct: 38  HEGLGISITGGK---EHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 94

Query: 172 EDIIAESRQEPQVELIV 188
             I+++ R E  +E  V
Sbjct: 95  VTILSQQRGE--IEFEV 109

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
             +LGI+++G           G  ++ V  GS A   GH+   D+++  +G +++G +  
Sbjct: 26  GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH 85

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
           DV +++  + Q   V L + RR        L 
Sbjct: 86  DVVEVLRNAGQV--VHLTLVRRKTSSSTSPLE 115

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ ++           A+I  +  G PA+  G L  GD++   NG S+ G      +  
Sbjct: 23  LGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAA 81

Query: 175 IAESRQEPQVELIVSRR 191
           + E++ +  V L +   
Sbjct: 82  VRETKSQTSVTLSIVHC 98

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM-RGKSFQD 170
           S  LG  V+G +    G  G  ++++++GS A  +G L   DQ++  NG+++ +  + Q 
Sbjct: 31  SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQ 90

Query: 171 VEDIIAESRQEPQVELIVSRRIQPKY 196
              I+ +++    V+L+++R   P+Y
Sbjct: 91  AISILQKAKDT--VQLVIARGSLPQY 114

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S LG+ +I G     G  G  I+ +  GSPA  +G L  GD+++E NG S+ G  +   
Sbjct: 18  PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRA 77

Query: 172 EDIIAESRQEPQVELIVSRR 191
            D+I    +  ++  +V++ 
Sbjct: 78  VDLIRHGGK--KMRFLVAKS 95

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            S LG  ++GG          G  + ++K+   A L+G L  GD+++  NG+ ++    Q
Sbjct: 27  PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 86

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAP 198
           D  D+   +     V L V  R+Q +  P
Sbjct: 87  DAVDLFRNAGYA--VSLRVQHRLQVQNGP 113

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           ++TLGI + GG           I  +++G  A   G L  G  ++E NG ++RGK  ++ 
Sbjct: 16  AATLGIAIEGGA--NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREA 73

Query: 172 EDIIAESRQE---PQVELIVSRR 191
             IIAE+ +      ++ +V+  
Sbjct: 74  ARIIAEAFKTKDRDYIDFLVTEF 96

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            A + +GI + GG           I +V   +PA L+G + AGD++   NGRS++GK+  
Sbjct: 28  DAQNLIGISIGGGA---QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 84

Query: 170 DVEDIIAESRQEPQVELIVSR-RIQPKYAPTLSK 202
           +V  +I E + E  V +  ++ +  PK    L  
Sbjct: 85  EVAKMIQEVKGE--VTIHYNKLQADPKQLEVLFN 116

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            GI ++ G+        T G  I+ +   SPA L G L  GD+++  NG+ +R  + Q V
Sbjct: 19  FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78

Query: 172 EDIIAESRQEPQVELIVSR 190
            D+I E+  +  +EL +  
Sbjct: 79  IDLIKEADFK--IELEIQT 95

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG+K++GG    +G     I +V  G     +G L  GDQ++  N  SM G SF++ 
Sbjct: 24  ETGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA 82

Query: 172 EDII--AESRQEPQVELIVSRRIQPK 195
           + II  A+ R E   E+   R   P 
Sbjct: 83  KSIITRAKLRSESPWEIAFIRS-GPS 107

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            A + +GI + GG           I +V   +PA L+G + AGD++   NGRS++GK+  
Sbjct: 33  DAQNLIGISIGGGA---QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 89

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
           +V  +I E + E  V +    ++Q 
Sbjct: 90  EVAKMIQEVKGE--VTIHY-NKLQY 111

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG+ + G K  +       +  +    PA  +G +  GD+++E N + + G+S Q+ 
Sbjct: 35  KNGLGLSLAGNK--DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
             II  +  +  V+L+  R    
Sbjct: 93  SAIIKTAPSK--VKLVFIRNEDA 113

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 112 SSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           S  LGI +IG     D      G  ++ V +G  A  +G +   D ++E +G S+ G + 
Sbjct: 14  SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73

Query: 169 QDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSK 202
                ++  ++    V  ++ R    + +     
Sbjct: 74  SFAASVLRNTKGR--VRFMIGRERPGEQSEVAQL 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAI---IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
              LGI +IG  +  D     +   ++ V +G  A  +G +   DQ++E +G S+ G + 
Sbjct: 19  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78

Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
                ++  ++    V  ++ R 
Sbjct: 79  NFAATVLRNTKGN--VRFVIGRE 99

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 55.2 bits (133), Expect = 6e-10
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             ++G+++ GG  +     G  +  V + SPA  EG L  GDQ++  N         ++ 
Sbjct: 38  GDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 91

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
              + +  +  +V ++  ++          KDVY R+ +
Sbjct: 92  VLFLLDLPKGEEVTILAQKK----------KDVYRRIVE 120

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 59.1 bits (142), Expect = 6e-10
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 11/150 (7%)

Query: 81  AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGK--LLEDGTRGAIIEKVK 138
                +    +G+     + L +         S LG  + GG             I K+ 
Sbjct: 45  LEAPGYVNGTEGEMEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKII 97

Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
            G  A  +G L   D ++  N   +R  +     + + E+     V L V RR  P    
Sbjct: 98  PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSI--VRLYVMRRKPPAEKV 155

Query: 199 TLSKDVYERVRDKPSVLVTSPGSPDIHSGR 228
              K +        S+              
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNS 185

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  ++GG+       G  I  +  G PADL G L  GDQ++  NG  +R  S +     
Sbjct: 320 LGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 375

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVP 234
           +  + Q   V +I   + +                   S+     G+  + S        
Sbjct: 376 LKNAGQT--VTIIAQYKPEEYSRFEAKIHDLREQLMNSSL---GSGTASLRSNPKRGFYI 430

Query: 235 SHHTDHHPITNSSV 248
               D+    +   
Sbjct: 431 RALFDYDKTKDCGF 444

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 2/150 (1%)

Query: 98  HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE 157
              + +             I    G     G     + K+ +G  A  +G L  GD+++ 
Sbjct: 152 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 211

Query: 158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVT 217
            N   +     +D    +  +     V L V++      + + +         +      
Sbjct: 212 VNSVGLEDVMHEDAVAALKNT--YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEI 269

Query: 218 SPGSPDIHSGRPGRPVPSHHTDHHPITNSS 247
           S  S             S         +  
Sbjct: 270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLL 299

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S LG  ++GGK     T G ++  +  G  AD +G L  GD +++  G +++G + + V
Sbjct: 25  GSGLGFGIVGGK-----TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQV 79

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
             ++        V ++V+R      + T
Sbjct: 80  AQVLRNCGNS--VRMLVARDPAGDISVT 105

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
              LG  + GGK       G  G  + ++ +G  A   G L  GD+V+  NG  +     
Sbjct: 17  ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76

Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
                ++  +     + L++ R    
Sbjct: 77  DHAVSLLTAASPT--IALLLEREAGS 100

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            GI V GG+     E+G    +I  V  G PAD  G L   D+V+  NG  M        
Sbjct: 28  FGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFA 85

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
              + +S +     ++V R  + + AP 
Sbjct: 86  VQQLRKSGKI--AAIVVKRPRKVQVAPL 111

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S LG+ ++GGK  +      +I +V +   A  +G L AGDQ++E NG  +R  S ++ 
Sbjct: 27  RSGLGLSIVGGK--DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
              + ++ Q+  V L+V R           
Sbjct: 85  ITALRQTPQK--VRLVVYRDEAHYRDEESG 112

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
                 ++++ +   A  +G+L  GD +++ NG      S  D   +I +SR   +++L+
Sbjct: 19  LGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR--GKLQLV 76

Query: 188 VSRRIQPKY 196
           V R ++  +
Sbjct: 77  VLRDLEHHH 85

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 112 SSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           S +LGI ++GG+ +       +  RG  I+ V + SPA   G L  GD+++E +G  +R 
Sbjct: 15  SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
            S +   + I ++     V  +V   I  +
Sbjct: 75  ASHEQAVEAIRKAGNP--VVFMVQSIISTR 102

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
            A   LG+ +   +       G  I  + +G   +++  L  GD + ++NG ++ G  FQ
Sbjct: 122 KAGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 175

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
               +   +  +  V + V+R 
Sbjct: 176 VCYALFKGANGK--VSMEVTRP 195

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              +G+ V GGK       G +I  V        +  L   D + + NG  +   S   +
Sbjct: 28  KKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86

Query: 172 EDI-IAESRQEPQVELIVSRRIQPKYAP---TLSKDVYER-----VRDKPSVLVTS--PG 220
           +   +  +  E  V L V R   P+       L K   +        ++    +     G
Sbjct: 87  KVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQG 146

Query: 221 SPDIHSGR 228
                  +
Sbjct: 147 QYPEIDSK 154

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGA----IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
           +   G  +I      +          I ++  GSPAD    L  GD+++  NG+S+    
Sbjct: 21  NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80

Query: 168 FQDVEDIIAESRQEPQVELIVSRR 191
             D+  +I ++     V L +  +
Sbjct: 81  HADIVKLIKDAGLS--VTLRIIPQ 102

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
            S +  LG  V GG   E G  G  + KV++GS A+  G L  GD++ E NG S+   + 
Sbjct: 18  KSPAGRLGFSVRGGS--EHGL-GIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTM 73

Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
                ++       ++ ++V R    
Sbjct: 74  GSAVKVL---TSSSRLHMMVRRMGSG 96

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +  LGI + GG+   +     +I K+ KG  AD    L  GD ++  NG  +   +  + 
Sbjct: 15  AGGLGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEA 71

Query: 172 EDIIAESRQEPQVELIVSRR 191
              + ++ +E  V L V   
Sbjct: 72  VQALKKTGKE--VVLEVKYM 89

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +   G  + GG+   +      + ++ +  PA+  G +  GD+++E NG + +       
Sbjct: 34  AKGFGFSLRGGR---EYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRA 90

Query: 172 EDIIAESRQEPQVELIVSRR 191
            ++I    +   V L + R 
Sbjct: 91  IELIKNGGRR--VRLFLKRG 108

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           +  LGI + GGK     +    G  I +V +  PA   G +  GD+++E NG +++G   
Sbjct: 25  TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH 83

Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
            +  + +  +     V++ V R   P
Sbjct: 84  HEAVEALRGAGTA--VQMRVWRESGP 107

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI ++G    E G  G  I  + KG     +G +  GD +++ N  +    S  D   +
Sbjct: 19  LGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77

Query: 175 IAESRQEPQ-VELIVSRR 191
           + +   +P  + L V++ 
Sbjct: 78  LRDIVHKPGPIVLTVAKS 95

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           + +  LGI + GG+   +     +I K+ KG  AD    L  GD ++  NG  +   +  
Sbjct: 86  ADAGGLGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 142

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRP 229
           +    + ++ +E  +E+   + + P +  +             S L   P SP       
Sbjct: 143 EAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSP------G 196

Query: 230 GRPVPSHHTDHHPITNSSVGGR 251
            +P       H  +  + V  R
Sbjct: 197 PQPRNLSEAKHVSLKMAYVSRR 218

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 112 SSTLGIKVIGGKLLEDGT------RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           S +LGI ++GG+ +          RG  I+ V + SPA   G L  GD+++E +G  +R 
Sbjct: 35  SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
            S +   + I ++     V  +V   I  +
Sbjct: 95  ASHEQAVEAIRKAGNP--VVFMVQSIISTR 122

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 115 LGIKVIGGKLLEDGTR--GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
           LGI + G +         G  ++ +  GS A L+G +   D+++  +  +++G +  DV 
Sbjct: 27  LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVV 86

Query: 173 DIIAESRQEPQVELIVSRRI 192
           +++  +     V L++ RR+
Sbjct: 87  EVLRNAGNP--VRLLLIRRL 104

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  + G K    G  G  I  V+ GSPA+  G LLAGD+++E NG ++  ++ Q V   
Sbjct: 16  YGFHLHGEK----GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSR 70

Query: 175 IAESRQEPQVELIVSRRIQPKY 196
           I  +     V L+V      + 
Sbjct: 71  IRAALNA--VRLLVVDPETDEQ 90

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              LG  + GG       G     + K+  G  A  +G L  GD+++  N  S+   + +
Sbjct: 34  PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE 93

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
           +   I+  + +   V L V + 
Sbjct: 94  EAVAILKNTSEV--VYLKVGKP 113

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           +  LGI + GGK     +    G  I +V +  PA   G +  GD+++E NG +++G   
Sbjct: 13  TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH 71

Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
            +  + +  +     V++ V R  + 
Sbjct: 72  HEAVEALRGAGTA--VQMRVWRERET 95

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              LG  + GG       G     + K+ +G  A  +G L  GD+++  N  S+   + +
Sbjct: 13  PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHE 72

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
           +    +  +     V L V++ 
Sbjct: 73  EAVTALKNTSDF--VYLKVAKP 92

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 112 SSTLGIKVIGGKLLEDGTR------GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
              LGI + GG     G        G  I KV     A  +G L  G +++E N +S+ G
Sbjct: 20  GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLG 79

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQP 194
            +  +   ++        + ++V    + 
Sbjct: 80  LTHGEAVQLLRSVGDT--LTVLVCDGFES 106

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGK 166
            P  +   G  V GG    D     I+ +V  G+PADL    L  GDQV+  NGR +   
Sbjct: 24  KPDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 80

Query: 167 SFQDVEDIIAESRQEPQVELIVSRR 191
           +   V   I  S +    EL++  R
Sbjct: 81  THDQVVLFIKASCERHSGELMLLVR 105

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            GI + GG+     + G    +I  V KG PA+  G L   D+V   NG SM        
Sbjct: 21  FGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFA 78

Query: 172 EDIIAESRQEPQVELIVSRR 191
              + +S +    ++ + R+
Sbjct: 79  VQQLRKSGKN--AKITIRRK 96

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM-RGKSFQDVED 173
           LG  V+  +    G     ++ V+ GS AD +  L   DQ++  N   + +  S Q    
Sbjct: 39  LGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98

Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLS 201
           ++ ++     + LIV+R      + T  
Sbjct: 99  LLQQTTGS--LRLIVAREPVHTKSSTSG 124

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +  G+ + GG+ +  G     +  + K  PA   G L  GD V+  NG S +G +    
Sbjct: 21  YAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQA 79

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
            + I     +  + L++ R +  
Sbjct: 80  VERIRAGGPQ--LHLVIRRPLSG 100

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGK 166
            P  +   G  V GG    D     I+ +V  G+PADL    L  GDQV+  NGR +   
Sbjct: 22  KPDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 78

Query: 167 SFQDVEDIIAESRQEP--QVELIVSRRIQPKYA 197
           +   V   I  S +    ++ L+V         
Sbjct: 79  THDQVVLFIKASCERHSGELMLLVRPNAVYDVV 111

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +   G  + GG+   +      + ++ +  PA   G +  GDQ+IE NG S R  +    
Sbjct: 21  AKGFGFSIRGGR---EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARA 77

Query: 172 EDIIAESRQEPQVELIVSRRIQ 193
            ++I    +   V L++ R   
Sbjct: 78  IELIKSGGRR--VRLLLKRGTG 97

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  +   +     T   I+ ++ +G  AD  G +  GD++ E NG  +  K  +++  I
Sbjct: 17  LGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQI 72

Query: 175 IAESRQEPQVELIVSRRIQP 194
           +A+S+     ++I   + + 
Sbjct: 73  LAQSQGAITFKIIPGSKEET 92

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
                 ++++ + S A  +G++  GD V++ NG      S  D + +I  S+   +++++
Sbjct: 21  LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMV 78

Query: 188 VSRR 191
           V R 
Sbjct: 79  VQRD 82

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVI-----GGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
            ++LGI V      GG        G  ++ V     A+ +G +  GD+V+  NG S+ G 
Sbjct: 19  DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
           + +   + +  + Q   V L++ +   P
Sbjct: 79  THKQAVETLRNTGQV--VHLLLEKGQSP 104

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              + LG  + GGK       G  I KV   S A   G L  GDQV+  N    +     
Sbjct: 24  PPGAQLGFNIRGGK---ASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHS 79

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
              +I+   +   ++ + V     P
Sbjct: 80  KAVEIL---KTAREISMRVRFFSGP 101

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
              LG  ++  +   D TR  I I  +     A+  G LL GD+++  N   +   S  +
Sbjct: 25  CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE 84

Query: 171 VEDIIAESRQEPQVELIVSR 190
             +I+        V L +  
Sbjct: 85  AVEILKAVPPGL-VHLGICS 103

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GG    D  +  +I ++  GS A     L  GD ++  +G      +  D +D 
Sbjct: 17  WGFRLSGGI---DFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDR 72

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
           I  +    Q+ L + R     ++P +S
Sbjct: 73  IKAASY--QLCLKIDRAETRLWSPQVS 97

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 53.4 bits (128), Expect = 8e-09
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ V GG   E G  G  I  + KG  AD  G L  GD+++  NG S+   + ++V ++
Sbjct: 98  LGLSVRGGL--EFGC-GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINL 153

Query: 175 IAESRQEPQVELIVSR-RIQPKYAPTLSKDVYERV 208
           I   R E  V + V    + P  +       ++ V
Sbjct: 154 I---RTEKTVSIKVRHIGLIPVKSSPDEPLTWQYV 185

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +GI +             I+ ++  G     +G L  GD++ E NG S+  ++ + ++ +
Sbjct: 15  MGITLKMN-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKM 69

Query: 175 IAESRQEPQVELIVSRR 191
           + E R     +++ S R
Sbjct: 70  LREMRGSITFKIVPSYR 86

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
              ++++ + S A  +G++  GD V++ NG      S  D + +I  S+   +++++V R
Sbjct: 22  HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK--GKLKMVVQR 79

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 98  HMILRKSGDRYPSASSTLGIKVIGGK------LLEDGTRGAIIEKVKKGSPADLEGHLLA 151
            + L K G   P     LG  +  G          +   G  I ++  G  A   G L  
Sbjct: 32  RVRLCKYGTEKP-----LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86

Query: 152 GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
            D+V+E NG  + GKS   V D++  + +   + + V    Q 
Sbjct: 87  NDEVLEVNGIEVSGKSLDQVTDMMIANSRN--LIITVRPANQR 127

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              LG  + GG       G     I K+ +G  A  +G L  GD+++  N  +++    +
Sbjct: 13  PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE 72

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
           +    +  +     V L V++ 
Sbjct: 73  EAVASLKNTSDM--VYLKVAKP 92

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +  LG+ VI             I  +     A  +G L  GD +I     ++ G + ++ 
Sbjct: 37  NLGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREF 90

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
             ++        +++   R    
Sbjct: 91  LKLLQNITIGTVLQIKAYRGFLE 113

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            S  LGI ++ G+       G  + KV  GS A   G L  GDQ++E+NG ++R  + Q 
Sbjct: 28  GSEPLGISIVSGE-----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQ 81

Query: 171 VEDIIAESRQEPQVELIVSRR 191
              II +      + ++    
Sbjct: 82  ARLIIGQQCDT--ITILAQYN 100

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GGK   D      I  +K G  A     +  GD V+  +G + +G +  + ++ 
Sbjct: 15  WGFRLQGGK---DFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNK 70

Query: 175 IAESRQEPQVELIVSRR 191
           I        + + + R 
Sbjct: 71  IKGCTG--SLNMTLQRE 85

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +LG+ +       +G   A I+++K G   D    +  GD +   NG ++ G    DV
Sbjct: 15  EDSLGLTITD-----NGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDV 69

Query: 172 EDIIAESRQEPQVELIV 188
              + E ++E    + +
Sbjct: 70  AKKLKELKKEELFTMKL 86

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
             A   LG  + GG    +   G  +  V+ GS A+ EG L  GDQ++  N +S+   + 
Sbjct: 17  AKAHEGLGFSIRGGS---EHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH 72

Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
            +    +   +   ++ L V   
Sbjct: 73  AEAVKAL---KGSKKLVLSVYSA 92

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
           G    ++  V +GSPAD  G L AGDQ++  N  +++  S +DV  +I +      + ++
Sbjct: 21  GQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV--LHMV 77

Query: 188 VSR 190
           ++ 
Sbjct: 78  IAE 80

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ V      ED   G  I ++   S A  +G +  GD++I+ NG  ++ +   +   +
Sbjct: 34  LGLTVCYRTDDEDDI-GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVAL 90

Query: 175 IAESRQEPQVELIVSRRIQP 194
           +     +    L+++R    
Sbjct: 91  LTSEENKN-FSLLIARPELQ 109

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +G+++           G  ++ V+  SPA L G L  GDQV++ NG +  G S      +
Sbjct: 18  IGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKV 70

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERV 208
           + ++  E ++ + + R    +   T+ KD    V
Sbjct: 71  LKQAFGE-KITMTI-RDRPFERTITMHKDSTGHV 102

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +    LG  V             II ++ KG  A+  G L  GD+V+E NG  +RGK   
Sbjct: 34  ARDIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN 87

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
           +V D++++      +  ++     P
Sbjct: 88  EVFDLLSDMHGT--LTFVLIPSSGP 110

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G +++GGK   D  +   I +V  GS A L   L  GD +   +G +    +  + ++ 
Sbjct: 15  WGFRLVGGK---DFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNR 70

Query: 175 IAESRQEPQVELIVSRR 191
           I        + L V+R 
Sbjct: 71  IKGCTD--NLTLTVARS 85

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GG+   D     I+ KV +   A+    L  GD ++  NG+S       + +  
Sbjct: 18  WGFRISGGR---DFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSK 73

Query: 175 IAESRQEPQVELIVSRRIQP 194
           I +S     + L + R   P
Sbjct: 74  IRQSAS--PLRLQLDRSSGP 91

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
           +   I  + K S A   G LL    + E NG+++ G     + DI++ S         V+
Sbjct: 23  KNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV------VT 75

Query: 190 RRIQPKY 196
             I P +
Sbjct: 76  ITIMPAF 82

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 14  SQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILD 73
            +++  P   P S   V++   +        R        ST      S    E     +
Sbjct: 4   DEEDGEPPYEPES-GCVEIPGLSEEEDPAPSRKIHF----STAPIQVFSTYSNEDYDRRN 58

Query: 74  ERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTR 130
           E +    A           +  +  + L K        S  LGI +IG     D      
Sbjct: 59  EDVDPMAASAEYELEKRVERLELFPVELEKD-------SEGLGISIIGMGAGADMGLEKL 111

Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           G  ++ V +G  A  +G +   D ++E +G S+ G +      ++  ++    V  ++ R
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR--VRFMIGR 169

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             ++G+++ GG        G  +  V + SPA  EG L  GDQ++  N         ++ 
Sbjct: 18  GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 71

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
              + +  +  +V ++  ++         S
Sbjct: 72  VLFLLDLPKGEEVTILAQKKKDVYRRIVES 101

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
            LG+ V+            I+  +  G PA   G L  GDQ++  NG S+ G      + 
Sbjct: 217 ILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQG 275

Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERV 208
           II   + + QV+L +              D+  ++
Sbjct: 276 IIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQL 310

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV- 188
           +  II  + +G  A+  G +  G ++IE NG+S+   + + +   ++ S  E  + +   
Sbjct: 315 QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE--IHMKTM 371

Query: 189 ----SRRIQPKYAPTL 200
                R +  +  P  
Sbjct: 372 PAAMFRLLTGQETPLY 387

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +GI +      E       + ++  G     +G L  GD+++E NG ++   S   ++  
Sbjct: 26  MGICLKLN---EKQ--SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKA 80

Query: 175 IAESRQEPQVELI 187
           + E++    +++I
Sbjct: 81  MKETKGMISLKVI 93

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
            +    +  V  G  A   G L  GDQ+++ N       S++   DI+ E+     + + 
Sbjct: 29  ESLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDS--LSIT 84

Query: 188 VSRRIQ 193
           V R   
Sbjct: 85  VVRCTS 90

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GGK   D      I ++  G  A   G +  GD V+  +G +    +  + ++ 
Sbjct: 15  WGFRLQGGK---DFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNK 70

Query: 175 IAESRQEPQVELIVSRRI 192
           I    +  ++ L +SR I
Sbjct: 71  IRACGE--RLSLGLSRAI 86

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 112 SSTLGIKVIGGK-----LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
              LG  + GG             G  + +V+   PA     L  GD++I+ NG S    
Sbjct: 20  DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 77

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRI 192
                  ++   +    VELI+ R +
Sbjct: 78  EHGQAVSLLKTFQNT--VELIIVREV 101

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GGK   D      I  +K G  A     +  GD V+  +G S +G +  + ++ 
Sbjct: 17  WGFRLQGGK---DFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNK 72

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
           I        + + + R      +  +S
Sbjct: 73  IKACTG--SLNMTLQRASAAAKSEPVS 97

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GGK   D      I ++  GS A     L  GD V+  +G +    +  + ++ 
Sbjct: 13  WGFRLQGGK---DFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNK 68

Query: 175 IAESRQEPQVELIVSRR 191
           I  +     + L + + 
Sbjct: 69  IKSASY--NLSLTLQKS 83

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             + G  +   +    G +G  +  +     A   G +LA D +IE NG ++   S ++V
Sbjct: 18  GGSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEV 72

Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
            + + +S    +V  ++  +   K 
Sbjct: 73  VEKVKKSGS--RVMFLLVDKETDKR 95

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G ++ GG+   D     ++ KV +   A     L  GD ++  NG S  G    + +  
Sbjct: 14  WGFRITGGR---DFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSK 69

Query: 175 IAESRQEPQVELIVSR 190
           I +S     + L + R
Sbjct: 70  IRQSPS--PLRLQLDR 83

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 21/96 (21%)

Query: 220 GSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDS 279
           GSP I SG  G  + S      P       G++Q     D    +L+V +I         
Sbjct: 1   GSPGI-SGGGGGILDSMVEKEEP-KEEEKLGKLQYSLDYDFQNNQLLVGIIQ-------- 50

Query: 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
                      AA L     G    PY K++LLPD+
Sbjct: 51  -----------AAELPALDMGGTSDPYVKVFLLPDK 75

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
             G  +   K     T G +I  +++GSPA+  G LL GD+V+  NG  +  +    V +
Sbjct: 14  NYGFFLRIEK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVE 68

Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKP 212
           ++ +S     V L+V      + A     D+ E  ++  
Sbjct: 69  LVRKSGNS--VTLLVLDGDSYEKAVKNQVDLKELDQEAK 105

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 112 SSTLGIKVIGGK-----LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
              LG  + GG             G  + +V+   PA     L  GD++I+ NG S    
Sbjct: 12  DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 69

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRI 192
                  ++   +    VELI+ R +
Sbjct: 70  EHGQAVSLLKTFQNT--VELIIVREV 93

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 119 VIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
           ++  +   DG  G  + +V  G PA   G + AGD+++   G S+ G   ++    I   
Sbjct: 19  LLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ 77

Query: 179 RQEPQVELIVSRR 191
                V L V   
Sbjct: 78  --GSCVSLTVVDP 88

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +LG+ + GG    +   G  I  V  GS A+  G L  GDQ++E NGRS       + 
Sbjct: 31  GRSLGLTIRGGA---EYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEA 86

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDV 204
             ++   +    + L V    +  +A T   + 
Sbjct: 87  VRLL---KSSRHLILTVKDVGRLPHARTTVDET 116

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G +++GG+   D +    I +V  GS A L   L  GD +   NG S    +  + ++ 
Sbjct: 20  WGFRLVGGR---DFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNR 75

Query: 175 IAESRQEPQVELIVSR 190
           I        + L VS 
Sbjct: 76  IKGCHD--HLTLSVSS 89

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 34/64 (53%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
            + G   ++VK+   +     L  GD ++E N ++++  +   V D++ ES +  +V L+
Sbjct: 22  DSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL 81

Query: 188 VSRR 191
           V R+
Sbjct: 82  VQRQ 85

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  +   +    G  G+ I++V+KG PADL G L   D +IE NG ++  + ++ V D 
Sbjct: 16  YGFHLNAIR----GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDR 70

Query: 175 IAESRQEPQVELIV 188
           I  S     V L+V
Sbjct: 71  IQSS--GKNVTLLV 82

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
               G  +   K     T G +I  +++GSPA+  G LL GD+V+  NG  +  +    V
Sbjct: 24  GQNYGFFLRIEK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQV 78

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYE 206
            +++ +S     V L+V      + A     D+ E
Sbjct: 79  VELVRKSGNS--VTLLVLDGDSYEKAVKNQVDLKE 111

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  +   K       G  I  V  GSPA   G L A D++IE NG+++ G    +V   
Sbjct: 17  YGFNLHSDK----SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVAS 71

Query: 175 IAESRQEPQVELIVSRR 191
           I     E    L+V   
Sbjct: 72  IKAREDE--ARLLVVGP 86

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 19/72 (26%)

Query: 244 TNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPR 303
           ++ S GG++ +K + D    +L+VT++                    A  L  R +G+PR
Sbjct: 2   SSGSSGGQLSIKLWFDKVGHQLIVTILG-------------------AKDLPSREDGRPR 42

Query: 304 CPYAKIYLLPDR 315
            PY KIY LPDR
Sbjct: 43  NPYVKIYFLPDR 54

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 19/86 (22%)

Query: 230 GRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLM 289
           G P           +     G++Q     D    +L+V +I                   
Sbjct: 1   GSPGIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQ------------------ 42

Query: 290 CAASLVPRSNGQPRCPYAKIYLLPDR 315
            AA L     G    PY K++LLPD+
Sbjct: 43  -AAELPALDMGGTSDPYVKVFLLPDK 67

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  +   K       G  I  V   SPA+  G L A D+++E NG  M GK   DV   
Sbjct: 22  YGFNLHSDK----SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSA 76

Query: 175 IAESRQEPQVELIVSRRIQPKY 196
           I     E   +L+V  R   ++
Sbjct: 77  IRAGGDE--TKLLVVDRETDEF 96

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
           G R  +++ V+ G  A   G +  GD++I+ NG  +   S  +V  +I   +    V L 
Sbjct: 27  GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLI---KSGAYVALT 82

Query: 188 VSRR 191
           +   
Sbjct: 83  LLGS 86

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  +  G       +G II+ ++ GSPA+  G L   D V+  NG+S+       V ++
Sbjct: 18  YGFYLRAGP----EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEM 72

Query: 175 IAESRQEPQVELIVSRRIQPKY 196
           I +   +    L+V  +   + 
Sbjct: 73  IRKGGDQ--TTLLVLDKELERP 92

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +  G  + GG    +      + K++ G  A L   +  GD+++  NG  + G S Q+ 
Sbjct: 20  GAPWGFTLKGGL---EHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEA 75

Query: 172 EDIIAESRQEPQVELIVSRR 191
             +I  S +   ++LIV RR
Sbjct: 76  LILIKGSFRI--LKLIVRRR 93

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 106 DRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           ++  +A+ T G  +   +  EDG R   +  VK+   A  +G L AGD+++E N R+   
Sbjct: 13  EKSDTAADTYGFSLSSVE--EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADA 69

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRR 191
            +   ++D +     +P + L+V   
Sbjct: 70  LNSSMLKDFL----SQPSLGLLVRTY 91

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
                 ++ V  G PA+  G L   D V++ N R +      ++   I     E  + L+
Sbjct: 34  CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILL 90

Query: 188 VSRRIQPK 195
           V R   P 
Sbjct: 91  VWRVSGPS 98

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S  LG  +  G        G  I  VK GS +   G L  GDQ++E NG        ++ 
Sbjct: 26  SRGLGCSISSGP---IQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEA 81

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKD 203
            +++  SR       IV+   +  +    S  
Sbjct: 82  VNVLKSSRSL--TISIVAAAGRELFMTDRSGP 111

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
           +  II  + +G  A+  G +  G ++IE NG+S+     + +  I++ +  E  ++ +
Sbjct: 31  QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM 87

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           D    +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 51

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 112 SSTLGIKVIGGKL----LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
           + T G ++    L     +       + +V + SPA L G L  GD +   NG ++ G  
Sbjct: 15  NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIR 73

Query: 168 FQDVEDIIAESRQEPQVELIVSR 190
            +++ DII  S     + L    
Sbjct: 74  HREIVDIIKAS--GNVLRLETLY 94

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
           N  V GRI                   S+K+  +  T  LVV +     L      + R 
Sbjct: 5   NIFVTGRIAF-----------------SLKY--EQQTQSLVVHVKECHQLAYADEAKKRS 45

Query: 305 -PYAKIYLLPDR 315
            PY K YLLPD+
Sbjct: 46  NPYVKTYLLPDK 57

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
                 ++ V  G PA+  G L   D V++ N R +      ++   I     E  + L+
Sbjct: 22  CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILL 78

Query: 188 VSRRIQPKYAP 198
           V R + P+  P
Sbjct: 79  VWRMV-PQVKP 88

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 20/77 (25%)

Query: 239 DHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS 298
            HH   +  V G  Q++  +D+    L++ +I                       L+ + 
Sbjct: 3   HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIE-------------------GKGLISKQ 43

Query: 299 NGQPRCPYAKIYLLPDR 315
            G    PY KI L+P+ 
Sbjct: 44  PGTCD-PYVKISLIPED 59

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             ++G+++ GG        G  +  V + SPA  EG L  GDQ++  N         ++ 
Sbjct: 10  GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 63

Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
              + +  +  +V ++  ++     
Sbjct: 64  VLFLLDLPKGEEVTILAQKKKDVYR 88

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 112 SSTLGIKVIGGK---------LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRS 162
           +  LG  + GG            +   +G  + +V +G PA++ G L  GD++++ NG  
Sbjct: 37  NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWD 95

Query: 163 MRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
           M   +       + +  +E  V L+V+R+   K
Sbjct: 96  MTMVTHDQARKRLTKRSEEV-VRLLVTRQSLQK 127

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 19/78 (24%)

Query: 238 TDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPR 297
            + +    ++  G ++     D     L  T+I                    A  L P 
Sbjct: 4   ANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIR-------------------AKGLKPM 44

Query: 298 SNGQPRCPYAKIYLLPDR 315
            +     PY K++LLP  
Sbjct: 45  DSNGLADPYVKLHLLPGA 62

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
               G +    +   +      +++VK+G PA   G L  GD++I+ NG S+ GK++  V
Sbjct: 43  DEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQV 101

Query: 172 EDIIAESRQEPQVELIVSRR 191
             +I  S  +  +EL V  +
Sbjct: 102 IALIQNS--DTTLELSVMPK 119

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 106 DRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           ++  +A+ T G  +   +  EDG R   +  VK+   A  +G L AGD+++E N R+   
Sbjct: 22  EKSDTAADTYGFSLSSVE--EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADA 78

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQP 194
            +   ++D +     +P + L+V    + 
Sbjct: 79  LNSSMLKDFL----SQPSLGLLVRTYPEL 103

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 112 SSTLGIKVIGGKL----LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
           + T G ++   +             +I K+++ SPA   G L AGD +   NG S  G +
Sbjct: 26  NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFT 84

Query: 168 FQDVEDIIAESRQEPQVELIV 188
           ++ V D+I  S     + +  
Sbjct: 85  YKQVVDLIRSSGNL--LTIET 103

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 21/71 (29%)

Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
           +  + G IQ++   D G                      L++ ++ A +LVPR N     
Sbjct: 2   SHPITGEIQLQINYDLG---------------------NLIIHILQARNLVPRDNNGYSD 40

Query: 305 PYAKIYLLPDR 315
           P+ K+YLLP R
Sbjct: 41  PFVKVYLLPGR 51

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
            G  +  G       +G II+ ++ GSPA+  G L   D V+  NG+S+       V ++
Sbjct: 19  YGFYLRAGP----EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEM 73

Query: 175 IAESRQEPQVELIVSRRIQPKY 196
           I +   +    L+V  +     
Sbjct: 74  IRKGGDQ--TTLLVLDKEAESI 93

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           +     L V +M A  L  +       P+ KIYLLPD+
Sbjct: 22  NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK 59

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
           G     +  +     A + G    GD ++       +  +  +V  ++    ++     +
Sbjct: 42  GNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100

Query: 188 VSRRIQPKY 196
           VS   +  +
Sbjct: 101 VSLLDEVTF 109

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
           ++  V+ GSPA   G L AGD +   NG S+ G    DV +++ +S  +  + L  +  
Sbjct: 37  VVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK--ISLRTTAL 92

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 21/71 (29%)

Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
           +    GRI ++ ++D   L                      V +  A +LVP        
Sbjct: 15  SMERRGRIYIQAHIDREVLI---------------------VVVRDAKNLVPMDPNGLSD 53

Query: 305 PYAKIYLLPDR 315
           PY K+ L+PD 
Sbjct: 54  PYVKLKLIPDP 64

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
           + D   G   +KVK    +     L  GD + E   ++++  +   V +++ +      V
Sbjct: 29  IADSPTG---QKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADV 85

Query: 185 ELIVSRRIQPKYAPT 199
            L++ R   P    T
Sbjct: 86  PLLILRGGPPSPTKT 100

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
                   +E V +G  A   G L  GD +IE NG+++     + V ++I +      + 
Sbjct: 41  PAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLM 97

Query: 186 LIVSRRIQP 194
           + V    + 
Sbjct: 98  VKVVMVTRH 106

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
           G     +  +     A L G    GD ++   G   +  +  +V  ++     E  VE+ 
Sbjct: 34  GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE-VEMK 91

Query: 188 VSRRIQPKYAPTLSK 202
           V        +   +K
Sbjct: 92  VVSL-LDSTSSMHNK 105

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           VK  +      L + +M    LV      P  PY K YLLPD 
Sbjct: 11  VKLSVSYRNGTLFIMVMHIKDLVTEDGADPN-PYVKTYLLPDT 52

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
           + D   G   ++VK+         L  GD ++E N ++++  S  +V DI+ +     + 
Sbjct: 27  IADSPTG---QRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSET 83

Query: 185 ELIVSRRIQP 194
            LI+ R   P
Sbjct: 84  SLIIHRGSGP 93

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D  +G ++ +V    PA   G +   D +I  + +     S  +  D +AE R    + +
Sbjct: 241 DQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPA--ISALETMDQVAEIRPGSVIPV 297

Query: 187 IVSR 190
           +V R
Sbjct: 298 VVMR 301

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 278 DSGTLRLVVTLMCAASLVPR-SNGQPRCPYAKIYLLPDR 315
           +      VV +  A  L           PY K+ +LP++
Sbjct: 18  NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK 56

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
            +    L+V ++    L          P+ K++L PD 
Sbjct: 33  STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM 70

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 260 SGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
            G  R+ + L +      D    +  + ++  ++L      Q +    ++ +LP  
Sbjct: 27  VGATRIQIALKY------DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCS 76

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192
            +E V +G  A   G L  GD +IE NG+++     + V ++I +      + + V    
Sbjct: 68  YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLMVKVVMVT 124

Query: 193 QP 194
           + 
Sbjct: 125 RH 126

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +A   LG+               +I ++  G     +G L  GD + E NG+ + G   +
Sbjct: 15  TAGEHLGVTF------RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPR 67

Query: 170 DVEDIIAESRQEPQVELI 187
            +++++  +     ++++
Sbjct: 68  ALQELLRNASGSVILKIL 85

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D   GA I +V   +PA+  G L   D +I  NG+S+   S  DV D+I        + +
Sbjct: 251 DVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSV--VSANDVSDVIKRES---TLNM 304

Query: 187 IVSRR 191
           +V R 
Sbjct: 305 VVRRG 309

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
             +  +GA++ +V   SPA+L G L AGD + + N   +       V+  I+  R    V
Sbjct: 277 YPEDFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKI--TQATQVKTTISLLRVGSTV 333

Query: 185 ELIVSRRIQPK 195
           ++IV R  +P 
Sbjct: 334 KIIVERDNKPL 344

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
                G  +    + S     G +  GD +I  N + +     + ++ I  E ++  ++ 
Sbjct: 382 HGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPV--TDVKSLQTIAQEKKK--ELL 436

Query: 186 LIVSRRIQPKYAPTL 200
           + V R     Y   +
Sbjct: 437 VQVLRGPGSMYLLVI 451

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D  RGA + +V  GS +   G + AGD +   NG+ +   SF ++   IA +    +V+L
Sbjct: 260 DVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKL 316

Query: 187 IVSRRIQPK 195
            + R  +P 
Sbjct: 317 GLLRNGKPL 325

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 20/72 (27%)

Query: 244 TNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPR 303
           ++ S  G+IQ+                 +++    S   +L+V +    +L+  S     
Sbjct: 5   SSGSPLGQIQL-----------------TIRH--SSQRNKLIVVVHACRNLIAFSEDGS- 44

Query: 304 CPYAKIYLLPDR 315
            PY ++YLLPD+
Sbjct: 45  DPYVRMYLLPDK 56

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 112 SSTLGIKVIGGKLLED-----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
           S  LG  + GG             G  + +V+   PA     L  GD++I+ NG S    
Sbjct: 1   SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDV------YERVRDKPSVLVTSPG 220
                  ++   +   ++ ++       K    +  +          V     V+  +P 
Sbjct: 59  EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118

Query: 221 SPDIHSGRPGRPVPSHHTDHHPITNSS 247
           S  I        V  +   +     +S
Sbjct: 119 SLLISWDASYYGVSYYRITYGETGGNS 145

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           + + G  +++V   SP+   G +  GD +++ NGR +      ++++ +        + L
Sbjct: 32  EVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPL--VDSSELQEAVLTES---PLLL 85

Query: 187 IVSRRIQPK 195
            V R     
Sbjct: 86  EVRRGNDDL 94

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           ++ ++   S A     +  G ++   +G       +  V   + +   +    + V+ 
Sbjct: 5   VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAP 59

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
             G  I+ V  GSPA     L  G  +   NG      +       +        + +  
Sbjct: 24  PDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITT 79

Query: 189 SR 190
            +
Sbjct: 80  DQ 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 55/360 (15%), Positives = 103/360 (28%), Gaps = 79/360 (21%)

Query: 3   TRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEG--- 59
            R  S + R Y +Q    Y            +    SR +     R  L      +    
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV---FAKYN---VSRLQPYLKLRQALLELRPAKNVLI 155

Query: 60  SGSIG-GKE---KQAILDERIKKFLAHPLSW-------KPSADGKYMIG-HMILRKSGDR 107
            G +G GK        L  +++  +   + W        P    + +      +  +   
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
               SS + +++     ++   R  +  K  +         LL    V   N ++    +
Sbjct: 216 RSDHSSNIKLRI---HSIQAELRRLLKSKPYENC-------LLVLLNV--QNAKAW--NA 261

Query: 168 F------------QDVEDII-AESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSV 214
           F            + V D + A +     ++         +    L K +  R +D P  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 215 LVTSPGSPDIHS--GRPGRPVPSH-----HTDHHPITNSSVGGRIQVKF-YLDSGTLR-- 264
           ++T   +P   S      R   +      H +   +T       I+     L+    R  
Sbjct: 322 VLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKM 374

Query: 265 ---LVVTLIHSVK----------FYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
              L V    S            F +    + +VV  +   SLV +   +       IYL
Sbjct: 375 FDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D  RGA + +V  GS +   G + AGD +   NG+ +   SF ++   IA +    +V+L
Sbjct: 260 DVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKL 316

Query: 187 IVSRRIQPK 195
            + R  +P 
Sbjct: 317 GLLRNGKPL 325

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
           L+DG +G  I++V KGSPA   G L   D +I  N   +   S  ++  ++A       +
Sbjct: 358 LKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPA--II 412

Query: 185 ELIVSRRIQPKYAP 198
            L + R  +  Y  
Sbjct: 413 ALQIVRGNESIYLL 426

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D  RGA + +V   S A   G + AGD +   NG+ +   SF  +   +       ++ L
Sbjct: 283 DAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTL 339

Query: 187 IVSRRIQPK 195
            + R  +  
Sbjct: 340 GLLRDGKQV 348

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 91  DGKYMIGHMIL-RKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHL 149
           DGK +  ++ L + S ++  S+S   GI+       +   +G ++  VK G+PA   G L
Sbjct: 344 DGKQVNVNLELQQSSQNQVDSSSIFNGIEG-AEMSNKGKDQGVVVNNVKTGTPAAQIG-L 401

Query: 150 LAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
             GD +I  N +++  K+  ++  ++        + L + R     Y  
Sbjct: 402 KKGDVIIGANQQAV--KNIAELRKVLDSKPS--VLALNIQRGDSTIYLL 446

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC-PYAKIYLLPDR 315
           ++  ++    +L V ++ A SL  +   +    PY K+YLL + 
Sbjct: 21  IQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENG 64

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
                  G+ +LVV ++ A  L  + +     PY KIYLLPDR
Sbjct: 11  FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR 53

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 278 DSGTLRLVVTLMCAASLVP-------RSNGQPRCPYAKIYLLPDR 315
           D     L V ++ A  L P       R +     PY KI LLPD+
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ 66

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D   G +I KV  GSPA   G L  GD ++    + ++     + ED+    R + Q+ +
Sbjct: 32  DVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ-----NAEDVYEAVRTQSQLAV 85

Query: 187 IVSR 190
            + R
Sbjct: 86  QIRR 89

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
            +   +G  +  V     A   G L AGD++I  +      +S +    I+        V
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVK---RILERYIPGDTV 546

Query: 185 ELIVSRR-----IQPKYAPTLSKDVYERVRDK 211
            +   RR     ++  +           V   
Sbjct: 547 TIHAFRRDELMTLELTWQEPAKSSYVLSVEQP 578

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
           +D   G  +   K     +  G L  GD  +  NG  +       +  +     +  ++ 
Sbjct: 33  DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMS 89

Query: 186 LIVSR 190
           L V R
Sbjct: 90  LTVER 94

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 123 KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP 182
            +  + T G I+  V+   PA+  GHL   D + + + + +   S  D++  +       
Sbjct: 50  NIPSNVTSGVIVRSVQSNMPAN--GHLEKYDVITKVDDKEI--ASSTDLQSALYNHSIGD 105

Query: 183 QVELIVSR 190
            +++   R
Sbjct: 106 TIKITYYR 113

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           +  +G  +  V    PA   G L AGD++   +G+ +   + + +   + E +   +V +
Sbjct: 2   NEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPI--NTSEQIVSYVREKQAGDRVRV 57

Query: 187 IVSR 190
              R
Sbjct: 58  TFIR 61

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
           D   G +I KV  GSPA   G L  GD ++    + +  ++ +DV + +       Q+ +
Sbjct: 253 DVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMV--QNAEDVYEAVRTQS---QLAV 306

Query: 187 IVSRR 191
            + R 
Sbjct: 307 QIRRG 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.84
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.6
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.58
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.58
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.56
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.56
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.56
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.55
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.55
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.55
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.55
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.55
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.55
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.54
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.54
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.54
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.53
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.53
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.53
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.53
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.53
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.52
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.52
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.51
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.51
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.5
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.5
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.5
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.5
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.5
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.5
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.49
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.49
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.49
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.49
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.49
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.48
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.48
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.47
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.47
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.47
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.47
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.47
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.47
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.47
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.46
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.46
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.46
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.45
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.44
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.44
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.44
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.43
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.43
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.43
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.43
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.43
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.42
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.42
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.42
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.42
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.42
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.42
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.42
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.41
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.41
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.41
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.41
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.41
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.41
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.41
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.4
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.4
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.4
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.4
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.4
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.4
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.4
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.4
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.4
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.39
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.39
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.38
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.38
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.38
2ego_A	96	General receptor for phosphoinositides 1- associat	99.38
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.38
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.38
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.38
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.37
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.37
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.37
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.37
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.36
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.36
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.35
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.35
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.35
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.34
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.34
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.34
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.34
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.33
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.33
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.33
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.33
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.33
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.33
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.33
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.32
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.32
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.32
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.3
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.3
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.3
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.3
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.29
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.29
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.29
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.28
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.28
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.28
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.28
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.28
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.28
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.27
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.27
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.25
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.25
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.24
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.23
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.23
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.23
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.22
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.22
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.22
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.86
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.22
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.21
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.2
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.2
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.19
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.19
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.18
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.18
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.17
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.16
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.16
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.15
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.15
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.14
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.12
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.11
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.11
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.08
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.07
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.06
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.03
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.0
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.98
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.96
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.95
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.92
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.89
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.87
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.87
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	98.51
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	98.51
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	98.51
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	98.51
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	98.48
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	98.47
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.45
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	98.45
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.44
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.43
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.42
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	98.41
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	98.39
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	98.38
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.37
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	98.37
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	98.36
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	98.36
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.35
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.34
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	98.33
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	98.33
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.31
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	98.3
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.3
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	98.27
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.23
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.23
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	98.22
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	98.19
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	98.17
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.16
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	98.13
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.11
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.08
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.06
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.06
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.04
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.01
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.0
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.99
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	97.95
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.89
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.88
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.84
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.84
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.83
3k50_A	403	Putative S41 protease; structural genomics, joint	97.81
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.79
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	97.64
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	97.54
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.4
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.28
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.16
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	97.03
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	96.79
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	96.76
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	96.63
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	96.56
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.3
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	95.48
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	95.31
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	94.0
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	93.36
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	90.55

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.84  E-value=1.5e-20  Score=157.11  Aligned_cols=117  Identities=49%  Similarity=0.804  Sum_probs=103.2

Q ss_pred             hccCCCCCCcCCCCCCceeEEEEEEeccCC---CCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCC
Q psy4487          77 KKFLAHPLSWKPSADGKYMIGHMILRKSGD---RYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGD  153 (315)
Q Consensus        77 ~~~~~~P~~wq~s~~g~~~i~~v~L~k~~~---~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD  153 (315)
                      .+++++|++||++.++++.+.+|+|.+...   ...+...+|||+|+||++...+..++||..|.++|+|+++|+|++||
T Consensus         9 ~~~~~~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD   88 (131)
T 1wfg_A            9 SHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGD   88 (131)
T ss_dssp             CCSCCCSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTC
T ss_pred             CCCCCCCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCC
Confidence            568899999999999999999999998721   22345789999999999887777899999999999999999999999


Q ss_pred             EEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         154 QVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       154 ~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +|++|||+++.+++|++++++|+.++....|.|+|.|...
T Consensus        89 ~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           89 EVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             EEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             EEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            9999999999999999999999998643459999998754

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.60  E-value=5.2e-15  Score=123.04  Aligned_cols=94  Identities=21%  Similarity=0.378  Sum_probs=80.4

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...+..+.|.|..       .||||+|.||++...+..++||..|.++++|+++|.|++||+|++|||+++.+++|++++
T Consensus        27 ~~~~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~   99 (130)
T 1i16_A           27 EATVCTVTLEKMS-------AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAW   99 (130)
T ss_dssp             SEEEEEEEEETTS-------SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHH
T ss_pred             CCcEEEEEEEcCC-------CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            3456677888753       689999999987544567899999999999999977999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++|+.+++. .|.|+|.|....
T Consensus       100 ~~l~~~~~~-~v~l~v~r~~~~  120 (130)
T 1i16_A          100 NIIKALPDG-PVTIVIRRKSLQ  120 (130)
T ss_dssp             HHHHTSCSS-EEEEEEEEESSC
T ss_pred             HHHHhCCCc-eEEEEEEeCCCC
Confidence            999998653 499999887543

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.58  E-value=9.5e-15  Score=120.12  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=77.0

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..      ..+|||+|.||........|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+|+
T Consensus        26 ~~v~l~k~~------~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   99 (118)
T 3b76_A           26 KVVNIQKDP------GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK   99 (118)
T ss_dssp             EEEEEECCT------TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred             EEEEEEeCC------CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            445666654      47999999999876566789999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCC
Q psy4487         177 ESRQEPQVELIVSRRI  192 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~  192 (315)
                      .++..  |.|+|.|..
T Consensus       100 ~~~~~--v~L~v~R~~  113 (118)
T 3b76_A          100 RTSSS--IVLKALEVK  113 (118)
T ss_dssp             SCCSE--EEEEEEEEE
T ss_pred             cCCCe--EEEEEEECC
Confidence            88655  999998864

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.58  E-value=2.1e-14  Score=114.82  Aligned_cols=86  Identities=21%  Similarity=0.296  Sum_probs=74.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..       .+|||+|.|+.     ...+||++|.+||+|++.|.|++||+|++|||+++.+++|.|++++|
T Consensus         6 ~k~V~l~K~~-------~~LG~tI~~~g-----~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lL   73 (95)
T 3gge_A            6 EKEVNVYKSE-------DSLGLTITDNG-----VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKL   73 (95)
T ss_dssp             EEEEEEECCS-------SCCCEEEECSS-----SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEECC-------CCceEEEEcCC-----CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence            4567788764       69999999742     24689999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      ++.+....++|.+.++..
T Consensus        74 k~~~~g~~~~L~lv~p~~   91 (95)
T 3gge_A           74 KELKKEELFTMKLIEPKK   91 (95)
T ss_dssp             HHSCTTCEEEEEEEEECS
T ss_pred             HhCCCCCEEEEEEECccc
Confidence            998876668888887763

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=1.6e-14  Score=117.76  Aligned_cols=97  Identities=30%  Similarity=0.587  Sum_probs=80.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ...++|.|..........+|||+|.||.+..  .+..|++|..|.++|+|+++|.|++||+|++|||+++.+++|++++.
T Consensus        13 ~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   92 (117)
T 1ujd_A           13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence            4566777765333334579999999998652  34568999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +|+.....  |.|+|.|+...
T Consensus        93 ~l~~~~~~--v~l~v~R~~~~  111 (117)
T 1ujd_A           93 IISQQSGE--AEICVRLDLNM  111 (117)
T ss_dssp             HHSCCSSC--EEEEEESSCCC
T ss_pred             HHhcCCCE--EEEEEEECCcc
Confidence            99987655  99999997643

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.56  E-value=6.6e-15  Score=121.08  Aligned_cols=90  Identities=19%  Similarity=0.292  Sum_probs=76.7

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..++|.|..      ..+|||+|.||.+......+++|..|.++|+|+++|.|++||+|++|||+++.++++.+++.+|
T Consensus        25 ~~~v~l~k~~------~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l   98 (120)
T 2iwo_A           25 LRTVEMKKGP------TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL   98 (120)
T ss_dssp             CEEEEEEC----------CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             cEEEEEEcCC------CCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            5567888865      3599999999987554557899999999999999977999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |+|+|.|...
T Consensus        99 ~~~~~~--v~l~v~r~g~  114 (120)
T 2iwo_A           99 KNASGS--IEMQVVAGGD  114 (120)
T ss_dssp             HHCCSE--EEEEEECCTT
T ss_pred             HcCCCe--EEEEEEECCc
Confidence            998765  9999998754

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=119.06  Aligned_cols=92  Identities=22%  Similarity=0.314  Sum_probs=80.5

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR-GKSFQDVE  172 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~-g~t~~eav  172 (315)
                      ..+..+.|.|..      ..+|||.|.||.+...+..|+||..|.++|+|+++|+|++||+|++|||+++. ++++++++
T Consensus        24 ~~~~~v~l~k~~------~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~   97 (128)
T 2db5_A           24 RQIEYIDIERPS------TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAI   97 (128)
T ss_dssp             CEEEEEEEECCS------SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHH
T ss_pred             CceEEEEEEECC------CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHH
Confidence            356777888764      36999999999887666679999999999999999999999999999999997 99999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .+|+..+..  |.|+|.|...
T Consensus        98 ~~l~~~~~~--v~l~v~r~~~  116 (128)
T 2db5_A           98 ALLQQTTGS--LRLIVAREPV  116 (128)
T ss_dssp             HHHHHCCSE--EEEEEEECCC
T ss_pred             HHHHcCCCe--EEEEEEcCCC
Confidence            999996644  9999999754

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=7.5e-14  Score=111.60  Aligned_cols=95  Identities=23%  Similarity=0.432  Sum_probs=80.0

Q ss_pred             CCCceeEEEEEEeccCCCCCCCCCccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC
Q psy4487          90 ADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR  164 (315)
Q Consensus        90 ~~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~  164 (315)
                      .++......+.|.|..       .+|||+|.||.+.     .....+++|..|.++|+|+++|.|++||+|++|||+++.
T Consensus         3 ~~~~~~~~~v~l~k~~-------~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~   75 (107)
T 1uhp_A            3 SGSSGKSLTLVLHRDS-------GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLS   75 (107)
T ss_dssp             CCCSSEEEEEEECCSS-------SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECT
T ss_pred             CCcCcEEEEEEEEeCC-------CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECC
Confidence            3445567778888863       6899999998853     223579999999999999998669999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         165 GKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       165 g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +++|.+++.+++.....  |.|+|.|...
T Consensus        76 ~~~~~~~~~~~~~~~~~--v~l~v~R~~~  102 (107)
T 1uhp_A           76 RATHDQAVEAFKTAKEP--IVVQVLRRTS  102 (107)
T ss_dssp             TCCHHHHHHHHHHCCSS--EEEEEEECCS
T ss_pred             CCCHHHHHHHHHcCCCc--EEEEEEeCCC
Confidence            99999999999987765  9999988653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.55  E-value=2.2e-14  Score=115.44  Aligned_cols=93  Identities=20%  Similarity=0.307  Sum_probs=77.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..      ..+|||+|.||.+. ....|++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+
T Consensus         5 ~~~~v~l~k~~------~~~lG~~i~g~~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~   77 (108)
T 3cbz_A            5 NIITVTLNMEK------YNFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV   77 (108)
T ss_dssp             CEEEEEECHHH------HCCCCEEEEEECSS-TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHH
T ss_pred             eEEEEEEEeCC------CCccCEEEEcCcCC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35567788754      36899999998753 346799999999999999999999999999999999999999999999


Q ss_pred             HHhc--CCCCcEEEEEEeCCCCC
Q psy4487         175 IAES--RQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s--~~~~~V~LvV~R~~~~~  195 (315)
                      |+.+  ... .|.|+|.|.....
T Consensus        78 l~~~~~~~~-~v~l~v~R~~~~~   99 (108)
T 3cbz_A           78 LRDIVHKPG-PIVLTVAKSGGGS   99 (108)
T ss_dssp             HHHHHTSSS-CEEEEEECCCC-C
T ss_pred             HHhcccCCC-eEEEEEEeCCCCC
Confidence            9988  322 3999999976543

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.55  E-value=6.3e-14  Score=113.24  Aligned_cols=90  Identities=28%  Similarity=0.418  Sum_probs=76.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..++|.|.        .||||+|.||.+... ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++
T Consensus        15 ~~~~v~l~k~--------~glG~~i~gg~~~~~-~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~   85 (109)
T 1wi4_A           15 AFRVITVTKE--------TGLGLKILGGINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSI   85 (109)
T ss_dssp             TEEEEEECCS--------SCCCEEEEECSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHH
T ss_pred             cEEEEEEeCC--------CccCEEEEeccCCCC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3556677764        589999999987543 3489999999999999999999999999999999999999999999


Q ss_pred             HHhcC--CCCcEEEEEEeCCC
Q psy4487         175 IAESR--QEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~--~~~~V~LvV~R~~~  193 (315)
                      |+.+.  ....++|.|.|...
T Consensus        86 l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           86 ITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             HHHSCCSSSSCEEEEEECCCC
T ss_pred             HHccccCCCceEEEEEEeCCC
Confidence            99987  22359999988754

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=5.2e-14  Score=112.53  Aligned_cols=95  Identities=22%  Similarity=0.373  Sum_probs=80.7

Q ss_pred             CceeEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487          92 GKYMIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF  168 (315)
Q Consensus        92 g~~~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~  168 (315)
                      ....+..+.|.|..       .+|||+|.|   |.+......|+||..|.++|+|+++|+|++||+|++|||+++.++++
T Consensus         6 ~~~~~~~v~l~k~~-------~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   78 (107)
T 1wf8_A            6 SGLELFPVELEKDE-------DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ   78 (107)
T ss_dssp             CCEEEEEEEEECBT-------TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred             CCceEEEEEEEECC-------CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            34566677887764       689999999   66554456799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         169 QDVEDIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       169 ~eav~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      .+++.+++..+..  |.|+|.|.....
T Consensus        79 ~~~~~~~~~~~~~--v~l~v~R~~~~~  103 (107)
T 1wf8_A           79 NFAATVLRNTKGN--VRFVIGREKPSG  103 (107)
T ss_dssp             HHHHHHHHHCCSE--EEEEEEEECCCS
T ss_pred             HHHHHHHhcCCCe--EEEEEEeCCCCC
Confidence            9999999987654  999999876543

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.55  E-value=2.2e-14  Score=115.06  Aligned_cols=81  Identities=21%  Similarity=0.346  Sum_probs=72.4

Q ss_pred             CCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         111 ASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       111 ~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      ...+|||+|+||.+...  ++.|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+++..+..  |.|+|
T Consensus        11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~--v~l~v   88 (106)
T 4amh_A           11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDF--VYLKV   88 (106)
T ss_dssp             -CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSE--EEEEE
T ss_pred             CCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe--EEEEE
Confidence            45799999999997643  556999999999999999999999999999999999999999999999988754  99999


Q ss_pred             EeCCC
Q psy4487         189 SRRIQ  193 (315)
Q Consensus       189 ~R~~~  193 (315)
                      .|...
T Consensus        89 ~R~~~   93 (106)
T 4amh_A           89 AKPGS   93 (106)
T ss_dssp             ECCSS
T ss_pred             EeCCC
Confidence            99764

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=1.9e-14  Score=117.81  Aligned_cols=89  Identities=25%  Similarity=0.400  Sum_probs=78.3

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|..       .||||+|.||.+...+..|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|
T Consensus        26 ~~~v~L~k~~-------~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   98 (117)
T 2fne_A           26 CKSITLERGP-------DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL   98 (117)
T ss_dssp             EEEEEECCBT-------TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cEEEEEEeCC-------CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567888764       689999999987655567999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |.|.|.|...
T Consensus        99 ~~~~~~--v~l~v~R~g~  114 (117)
T 2fne_A           99 KRTKGT--VTLMVLSSDE  114 (117)
T ss_dssp             HHCCSS--EEEEEEECSC
T ss_pred             HcCCCe--EEEEEEeCCc
Confidence            988765  9999998753

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.54  E-value=7.6e-14  Score=110.34  Aligned_cols=92  Identities=25%  Similarity=0.394  Sum_probs=79.1

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      +.+..+.|.|..       .||||+|.||.+..  ....|++|..|.++|||+++|.|++||+|++|||+++.++++.++
T Consensus         3 ~~~~~v~l~k~~-------~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   75 (102)
T 2i1n_A            3 FKYEEIVLERGN-------SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRA   75 (102)
T ss_dssp             EEEEEEEEECBT-------TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHH
T ss_pred             ceEEEEEEEECC-------CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            456677888763       68999999998642  245799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         172 EDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +.+++..+..  |.|.|.|....
T Consensus        76 ~~~~~~~g~~--v~l~v~R~~~~   96 (102)
T 2i1n_A           76 VEALKEAGPV--VRLVVRRRQPP   96 (102)
T ss_dssp             HHHHHHSCSE--EEEEEEEECCC
T ss_pred             HHHHHcCCCe--EEEEEEeCCCC
Confidence            9999987644  99999987654

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.54  E-value=7.3e-14  Score=109.11  Aligned_cols=89  Identities=26%  Similarity=0.406  Sum_probs=76.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..       .+|||+|.||.+......|++|..|.++|+|+++|.|++||+|++|||+++.++++++++.++
T Consensus         6 ~~~v~l~k~~-------~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   78 (96)
T 1d5g_A            6 IFEVELAKND-------NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   78 (96)
T ss_dssp             EEEEEEECSS-------SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEeCC-------CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3456677653       699999999987665667999999999999999888999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |.|.|.|...
T Consensus        79 ~~~g~~--v~l~v~R~~~   94 (96)
T 1d5g_A           79 RNTGQV--VHLLLEKGQS   94 (96)
T ss_dssp             HSCCSE--EEEEEECCSC
T ss_pred             HcCCCe--EEEEEEcCCC
Confidence            986544  9999988654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.54  E-value=5.5e-14  Score=113.26  Aligned_cols=93  Identities=22%  Similarity=0.380  Sum_probs=79.2

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      +..+..+.|.|..       .||||+|.|   |.+......|++|..|.++|+|+++|+|++||+|++|||+++.++++.
T Consensus         2 ~~~~~~v~l~k~~-------~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~   74 (113)
T 2g5m_B            2 HMELFPVELEKDS-------EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS   74 (113)
T ss_dssp             CCEEEEEECCCCS-------SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHH
T ss_pred             CeEEEEEEEEeCC-------CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            4455667777653       689999999   665544567999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++.+++..+..  |.|.|.|....
T Consensus        75 ~~~~~~~~~g~~--v~l~v~R~~~~   97 (113)
T 2g5m_B           75 FAASVLRNTKGR--VRFMIGRERPG   97 (113)
T ss_dssp             HHHHHHHHSCSS--CEEEEEECCCC
T ss_pred             HHHHHHhcCCCe--EEEEEEeCCCC
Confidence            999999998655  99999987644

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=113.88  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=77.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCC-CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL-EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      +..+.|.|..       .||||+|.||.+. ...+.+++|..|.++|+|+++|.|++||+|++|||+++.+++|++++.+
T Consensus        16 ~~~v~l~k~~-------~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~   88 (108)
T 2d92_A           16 VKIVELVKDC-------KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEI   88 (108)
T ss_dssp             CEEEEEEECS-------SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             eEEEEEEECC-------CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            5667888764       6999999998764 2246799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~  193 (315)
                      |+..... .|.|+|.|...
T Consensus        89 l~~~~~~-~v~l~v~R~~~  106 (108)
T 2d92_A           89 LKAVPPG-LVHLGICSGPS  106 (108)
T ss_dssp             HHHSCSE-EEEEEEECCCC
T ss_pred             HHhCCCC-eEEEEEEcCCC
Confidence            9997543 49999998763

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.53  E-value=5.9e-14  Score=111.86  Aligned_cols=90  Identities=22%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +..+.|.|..       .||||+|.||.+..  .++.|++|..|.++|+|+++|+|++||+|++|||+++.+.++.+++.
T Consensus         4 ~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   76 (105)
T 2awx_A            4 IMEIKLIKGP-------KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVT   76 (105)
T ss_dssp             EEEEEEECBT-------TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred             EEEEEEEECC-------CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            4567777764       59999999998642  34569999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++..+..  |.|.|.|....
T Consensus        77 ~~~~~~~~--v~l~v~R~~~~   95 (105)
T 2awx_A           77 ALKNTSDF--VYLKVAKPTSM   95 (105)
T ss_dssp             HHHSCCSE--EEEEEECCCC-
T ss_pred             HHHcCCCe--EEEEEEcCCCC
Confidence            99987644  99999987754

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.53  E-value=5e-14  Score=123.03  Aligned_cols=88  Identities=23%  Similarity=0.416  Sum_probs=76.8

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .+..+.|.|..       .||||+|.|   |........|+||..|.+||+|+++|+|++||+|++|||+++.+++|.++
T Consensus        80 ~~~~v~l~k~~-------~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~  152 (170)
T 3egg_C           80 ELFPVELEKDS-------EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA  152 (170)
T ss_dssp             EEEEEEEECBT-------TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHH
T ss_pred             eEEEEEEEeCC-------CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            45667787764       689999999   55554456899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeC
Q psy4487         172 EDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~  191 (315)
                      +.+|+.++..  |.|+|.|+
T Consensus       153 ~~~l~~~g~~--v~L~V~R~  170 (170)
T 3egg_C          153 ASVLRNTKGR--VRFMIGRE  170 (170)
T ss_dssp             HHHHHHCCSE--EEEEEEEC
T ss_pred             HHHHHcCCCE--EEEEEEeC
Confidence            9999997754  99999884

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.53  E-value=8.2e-14  Score=108.24  Aligned_cols=89  Identities=22%  Similarity=0.324  Sum_probs=76.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .+..+.|.|..       .||||+|.||.+..  ....|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++
T Consensus         3 ~~~~v~l~k~~-------~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~   75 (94)
T 2fe5_A            3 TIMEVNLLKGP-------KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV   75 (94)
T ss_dssp             CEEEEEEECCT-------TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHH
T ss_pred             EEEEEEEEECC-------CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            35667887763       68999999998652  3457999999999999999988999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+++.....  |.|.|.|..
T Consensus        76 ~~~~~~~~~--v~l~v~R~g   93 (94)
T 2fe5_A           76 ASLKNTSDM--VYLKVAKPG   93 (94)
T ss_dssp             HHHHTCCSE--EEEEEECCC
T ss_pred             HHHHcCCCe--EEEEEEcCC
Confidence            999887654  999998853

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=8.2e-14  Score=113.89  Aligned_cols=89  Identities=22%  Similarity=0.350  Sum_probs=75.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .+..+.|.|..       .||||+|.||.+..  .++.|++|..|.++|+|+++|+|++||+|++|||+++.++++++++
T Consensus        24 ~~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~   96 (117)
T 2byg_A           24 TVVEIKLFKGP-------KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAV   96 (117)
T ss_dssp             EEEEEEEECBT-------TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEeCC-------CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            34566676653       69999999998642  3457999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|+..+..  |.|+|.|..
T Consensus        97 ~~l~~~g~~--v~l~v~R~~  114 (117)
T 2byg_A           97 AILKNTSEV--VYLKVGKPT  114 (117)
T ss_dssp             HHHHTCCSE--EEEEEEEEE
T ss_pred             HHHHcCCCe--EEEEEEeCC
Confidence            999987644  999998864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.52  E-value=1e-13  Score=110.47  Aligned_cols=92  Identities=22%  Similarity=0.381  Sum_probs=78.0

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      .....++|.|..       .+|||+|.||.+..   .++.+++|..|.++|+|+++|.|++||+|++|||+++.++++++
T Consensus         6 ~~~~~v~l~~~~-------~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   78 (105)
T 1wha_A            6 SGRHVACLARSE-------RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH   78 (105)
T ss_dssp             CEEEEEEECCCT-------TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHH
T ss_pred             CeeEEEEEEeCC-------CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            345566777754       68999999998742   34579999999999999999889999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         171 VEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++.+|+.....  |.|+|.|....
T Consensus        79 ~~~~l~~~g~~--v~l~v~R~~~~  100 (105)
T 1wha_A           79 AVSLLTAASPT--IALLLEREAGS  100 (105)
T ss_dssp             HHHHHTSCCSC--EEEEEEECCCC
T ss_pred             HHHHHHcCCCe--EEEEEEECCCC
Confidence            99999887555  99999997643

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.52  E-value=1.4e-13  Score=108.55  Aligned_cols=91  Identities=25%  Similarity=0.482  Sum_probs=77.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ....+.|.|..       .+|||+|.||.+..  ....|++|..|.++|+|+++|.|++||+|++|||+.+.++++.+++
T Consensus         7 ~~~~v~l~~~~-------~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   79 (101)
T 2jik_A            7 TEEEINLTRGP-------SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV   79 (101)
T ss_dssp             EEEEEEEECCT-------TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             ccEEEEEEeCC-------CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            45667888753       69999999998752  2356999999999999999988999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .+++..+..  |.|.|.|....
T Consensus        80 ~~~~~~g~~--v~l~v~R~~~~   99 (101)
T 2jik_A           80 DLFRNAGYA--VSLRVQHRLES   99 (101)
T ss_dssp             HHHHTCCSE--EEEEEEEESCC
T ss_pred             HHHHhCCCe--EEEEEEeCCCC
Confidence            999887544  99999887643

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.51  E-value=9.2e-14  Score=110.74  Aligned_cols=89  Identities=28%  Similarity=0.458  Sum_probs=76.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.| |.       ..+|||+|.||........|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus        11 ~~~~v~l-~~-------~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~   82 (106)
T 3axa_A           11 EIITVTL-KK-------QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL   82 (106)
T ss_dssp             CEEEEEE-EC-------SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eEEEEEE-CC-------CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4555666 43       368999999988766667899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~  193 (315)
                      ++..+..  |.|.|.|...
T Consensus        83 ~~~~g~~--v~l~v~R~~~   99 (106)
T 3axa_A           83 MTRTSSV--VTLEVAKQGA   99 (106)
T ss_dssp             HHTCCSE--EEEEEECCCS
T ss_pred             HHcCCCe--EEEEEEeCCc
Confidence            9887654  9999998764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.51  E-value=7.2e-14  Score=108.61  Aligned_cols=75  Identities=25%  Similarity=0.406  Sum_probs=65.7

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|+|..      ..+|||++.+|.          |..|.+++||+++| |++||+|++|||+++.+++|+|++++|+
T Consensus         6 r~v~l~k~~------~g~~Gf~i~~g~----------I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr   68 (82)
T 1r6j_A            6 RTITMHKDS------TGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS   68 (82)
T ss_dssp             EEEEEECCT------TSCCCEEEETTE----------EEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEECC------CCCeEEEEECCE----------EEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence            456788875      357999999863          89999999999999 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEe
Q psy4487         177 ESRQEPQVELIVSR  190 (315)
Q Consensus       177 ~s~~~~~V~LvV~R  190 (315)
                      +++..  |+|+|..
T Consensus        69 ~~g~~--V~L~v~p   80 (82)
T 1r6j_A           69 TSGTV--VTITIMP   80 (82)
T ss_dssp             HSCSE--EEEEEEE
T ss_pred             cCCCE--EEEEEEe
Confidence            77755  9998854

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=1e-13  Score=110.24  Aligned_cols=92  Identities=27%  Similarity=0.432  Sum_probs=77.4

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .+....+.|.|..       .||||.|.||.+.   ..+++|..|.++|+|+++|.|++||+|++|||+++.++++++++
T Consensus         7 ~~~~~~v~l~~~~-------~g~G~~i~~g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~   76 (103)
T 1uep_A            7 GYKELDVHLRRME-------SGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVI   76 (103)
T ss_dssp             SEEEECCEEESSS-------SSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             CceEEEEEEEeCC-------CccCEEEeeecCC---CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4556667788753       6899999998764   35899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++|+.......|.|+|.|....
T Consensus        77 ~~l~~~~~g~~v~l~v~R~~~~   98 (103)
T 1uep_A           77 DLMHHAARNGQVNLTVRRKVLS   98 (103)
T ss_dssp             HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCCcEEEEEEeCCCC
Confidence            9999873112399999997654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.50  E-value=5.2e-14  Score=114.09  Aligned_cols=91  Identities=25%  Similarity=0.437  Sum_probs=78.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR-GKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~-g~t~~eav~  173 (315)
                      .+..+.|.|..      ..+|||+|.||.....+..|++|..|.++|+|+++|.|++||+|++|||+++. ++++++++.
T Consensus        20 ~~~~v~l~k~~------~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~   93 (117)
T 2o2t_A           20 HVEVFELLKPP------SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAIS   93 (117)
T ss_dssp             CEEEEEEECCS------SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHH
T ss_pred             eEEEEEEEECC------CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHH
Confidence            46677888864      47999999999876555679999999999999999999999999999999998 999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +|+..+..  |.|+|.|...
T Consensus        94 ~l~~~~~~--v~l~v~R~~~  111 (117)
T 2o2t_A           94 ILQKAKDT--VQLVIARGSL  111 (117)
T ss_dssp             HHHHCCSE--EEEEEESSCC
T ss_pred             HHHcCCCE--EEEEEEeCCc
Confidence            99987654  9999998754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=1.4e-13  Score=110.44  Aligned_cols=89  Identities=28%  Similarity=0.472  Sum_probs=77.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..       .||||+|.||.+......|++|..|.++|+|+++|+|++||+|++|||+.+.++++.+++.+
T Consensus         8 ~~~~v~l~~~~-------~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   80 (110)
T 1um1_A            8 YVFTVELERGP-------SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL   80 (110)
T ss_dssp             CEEEEEEECCT-------TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHH
T ss_pred             cEEEEEEEECC-------CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35566777764       58999999998776567899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      ++..+..  |.|.|.|..
T Consensus        81 ~~~~~~~--v~l~v~R~~   96 (110)
T 1um1_A           81 IRHGGKK--MRFLVAKSD   96 (110)
T ss_dssp             HHTCCSE--EEEEEECCC
T ss_pred             HHcCCCe--EEEEEEeCC
Confidence            9987544  999999875

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.50  E-value=2e-13  Score=110.83  Aligned_cols=91  Identities=23%  Similarity=0.395  Sum_probs=77.3

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      ...+.|.|..      ..+|||+|.||.+..      ....|++|..|.++|+|+++|.|++||+|++|||+++.++++.
T Consensus        16 ~~~v~l~k~~------~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   89 (117)
T 2ehr_A           16 PRIVEIFREP------NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS   89 (117)
T ss_dssp             CEEEEECCCS------SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred             CEEEEEEeCC------CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            4556787764      479999999998642      2346999999999999999888999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++.+++..+..  |.|+|.|....
T Consensus        90 ~~~~~~~~~g~~--v~l~v~r~~~~  112 (117)
T 2ehr_A           90 EAVEAIKNAGNP--VVFIVQSLSST  112 (117)
T ss_dssp             HHHHHHHTSCSS--EEEEECCBSCC
T ss_pred             HHHHHHHcCCCe--EEEEEEECCCC
Confidence            999999987655  99999877654

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=106.67  Aligned_cols=86  Identities=24%  Similarity=0.421  Sum_probs=73.4

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|.|..       .||||.+.||.+..   .+++|..|.++|||+++|.|++||+|++|||+++.+.++++++.+|+
T Consensus         4 ~~v~l~~~~-------~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   73 (90)
T 2q9v_A            4 QDIFLWRKE-------TGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ   73 (90)
T ss_dssp             EEEEEECBT-------TBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EEEEEEECC-------CccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456777764       68999999997642   46999999999999999989999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCC
Q psy4487         177 ESRQEPQVELIVSRRI  192 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~  192 (315)
                      .......|.|.|.|..
T Consensus        74 ~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           74 QAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             HHHHHTEEEEEEEECC
T ss_pred             hCCCCCeEEEEEEecc
Confidence            8754224999998864

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.50  E-value=9.4e-14  Score=110.74  Aligned_cols=89  Identities=29%  Similarity=0.453  Sum_probs=75.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..++|.|..      ..+|||+|.||.+.   ..+++|..|.++|+|++++.|++||+|++|||+++.++++++++.+
T Consensus         9 ~~~~v~l~~~~------~~~lG~~l~~g~~~---~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~   79 (103)
T 2dc2_A            9 PIRKVLLLKED------HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI   79 (103)
T ss_dssp             CEEEEEEECCS------SSCCCEEEEEEGGG---TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHH
T ss_pred             CcEEEEEEeCC------CCccCEEEEeccCC---CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35667777754      47999999999764   2489999999999999975699999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+..++.  |+|+|.+....
T Consensus        80 l~~~~~~--v~l~v~~~~~~   97 (103)
T 2dc2_A           80 LSQQRGE--IEFEVVYVALE   97 (103)
T ss_dssp             HHHCCSE--EEEEEEECC--
T ss_pred             HHhCCCc--EEEEEEecCCc
Confidence            9998865  99999887644

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.49  E-value=1.5e-13  Score=107.78  Aligned_cols=89  Identities=31%  Similarity=0.542  Sum_probs=76.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCC---CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~---g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .+..++|.|..      ..||||+|.||.+...   ...|++|..|.++|||+++|.|++||+|++|||+.+.+.++.++
T Consensus         5 ~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~   78 (98)
T 1ihj_A            5 LIHMVTLDKTG------KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV   78 (98)
T ss_dssp             EEEEEEEECTT------SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eEEEEEEEeCC------CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            45667888854      4699999999986532   34589999999999999988899999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeC
Q psy4487         172 EDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+++..+..  |.|.|.|.
T Consensus        79 ~~~l~~~g~~--v~l~v~R~   96 (98)
T 1ihj_A           79 IDLIKEADFK--IELEIQTF   96 (98)
T ss_dssp             HHHHHHSCSE--EEEEEEEC
T ss_pred             HHHHhcCCCe--EEEEEEeC
Confidence            9999986544  99999886

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=106.46  Aligned_cols=90  Identities=26%  Similarity=0.489  Sum_probs=75.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ..++.|.|.       ..+|||++.||.+.. ....+++|..|.++|||+++|.|++||+|++|||+.+.+++++++..+
T Consensus         4 ~~~v~l~k~-------~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   76 (97)
T 2jil_A            4 TVEVTLHKE-------GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSI   76 (97)
T ss_dssp             EEEEEEECB-------TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             EEEEEEEeC-------CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            456677765       369999999987542 235689999999999999998899999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+..+..  |.|.|.|+...
T Consensus        77 l~~~g~~--v~l~v~R~~~~   94 (97)
T 2jil_A           77 LKQCGQE--AALLIEYDVSE   94 (97)
T ss_dssp             HHHSCSE--EEEEEEEECCC
T ss_pred             HHcCCCe--EEEEEEeCCCc
Confidence            9985444  99999987643

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.49  E-value=1.6e-13  Score=106.86  Aligned_cols=86  Identities=22%  Similarity=0.341  Sum_probs=73.6

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ..+..+.|.|..       .+|||.+.++.    ...+++|..|.++|+|+++|.|++||+|++|||+++.+.+|+++++
T Consensus         3 ~~~r~v~l~k~~-------~~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~   71 (93)
T 3o46_A            3 DSVKIIRLVKNR-------EPLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQ   71 (93)
T ss_dssp             -CCEEEEEEESS-------SCCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHH
T ss_pred             ccEEEEEEEeCC-------CCccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            346677888863       59999999872    2358999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCC
Q psy4487         174 IIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~  192 (315)
                      +|+..++.  |.|+|.+..
T Consensus        72 ~l~~~~~~--v~l~v~~~~   88 (93)
T 3o46_A           72 ILAQSQGA--ITFKIIPGS   88 (93)
T ss_dssp             HHHHCCEE--EEEEEECC-
T ss_pred             HHHhCCCe--EEEEEEeCC
Confidence            99998864  999988754

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.49  E-value=3.7e-13  Score=105.05  Aligned_cols=90  Identities=27%  Similarity=0.385  Sum_probs=77.0

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +.+.++.|.|..     .+.+|||.+.|+.+    ..|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.
T Consensus         2 ~~~~~v~l~k~~-----~~~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   72 (95)
T 2vwr_A            2 MEILQVALHKRD-----SGEQLGIKLVRRTD----EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQ   72 (95)
T ss_dssp             EEEEEEEEECSS-----TTCCCCEEEEECSS----SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             cEEEEEEEEECC-----CCCcccEEEEeccC----CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            356778888753     24689999998765    358999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .++..+..  |.|.|.|....
T Consensus        73 ~~~~~g~~--v~l~v~R~~~~   91 (95)
T 2vwr_A           73 IIQASGER--VNLTIARPGKP   91 (95)
T ss_dssp             HHHHCCSE--EEEEEEEESCS
T ss_pred             HHHcCCCE--EEEEEEcCCcC
Confidence            99987654  99999987543

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.5e-13  Score=109.30  Aligned_cols=91  Identities=26%  Similarity=0.465  Sum_probs=77.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ....++|.|..       .+|||+|.||.+...  ...+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++
T Consensus        17 ~~~~v~l~r~~-------~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   89 (120)
T 2eno_A           17 TEEEINLTRGP-------SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV   89 (120)
T ss_dssp             EEEEEEEECCS-------SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHH
T ss_pred             ceEEEEEEECC-------CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            45567788764       699999999886521  356999999999999999988999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .+++.....  |.|+|.|....
T Consensus        90 ~~~~~~g~~--v~l~v~R~~~~  109 (120)
T 2eno_A           90 DLFRNAGYA--VSLRVQHRLQV  109 (120)
T ss_dssp             HHHHHHCSE--EEEEEEEEEEC
T ss_pred             HHHHcCCCe--EEEEEEeCCcC
Confidence            999987644  99999887643

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.48  E-value=3.4e-13  Score=103.01  Aligned_cols=83  Identities=28%  Similarity=0.417  Sum_probs=70.5

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      +++|+|..       .||||.+.||.+.   ..+++|..|.++|+|+++|.|++||+|++|||+++.+++++++.++|+.
T Consensus         3 ~v~l~k~~-------~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   72 (85)
T 2i04_A            3 HTKLRKSS-------RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS   72 (85)
T ss_dssp             EEEEECBT-------TBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEECC-------CCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45677653       6899999998653   4689999999999999988899999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEe
Q psy4487         178 SRQEPQVELIVSR  190 (315)
Q Consensus       178 s~~~~~V~LvV~R  190 (315)
                      ......|.|.|.|
T Consensus        73 ~~~g~~v~l~v~R   85 (85)
T 2i04_A           73 IPIGASVDLELCR   85 (85)
T ss_dssp             SCTTCEEEEEEEC
T ss_pred             CCCCCeEEEEEEC
Confidence            7522348888875

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.48  E-value=3.6e-13  Score=104.38  Aligned_cols=85  Identities=28%  Similarity=0.445  Sum_probs=74.3

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ..++.|.|..      ..+|||.+.|+.+    ..|++|..|.++|||+++|.|++||+|++|||+++.+.+++++..++
T Consensus         5 ~~~v~l~k~~------~~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   74 (92)
T 2qg1_A            5 TLTIGLQKKP------GKGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL   74 (92)
T ss_dssp             EEEEEEECCT------TSCCSEEEECCSS----SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEeCC------CCcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567787764      4799999999764    36899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +..+..  |.|.|.|..
T Consensus        75 ~~~~~~--v~l~v~R~~   89 (92)
T 2qg1_A           75 KCSLGT--VTLEVGRIS   89 (92)
T ss_dssp             HHCCSE--EEEEEECCC
T ss_pred             HcCCCe--EEEEEEccc
Confidence            987655  999998875

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=1.6e-13  Score=109.63  Aligned_cols=90  Identities=27%  Similarity=0.430  Sum_probs=78.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEE-----cCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVI-----GGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIv-----GGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      ...+.|.|..       .+|||.|.     ||.+......|++|..|.++|+|+++|.|++||+|++|||+++.++++.+
T Consensus        10 ~~~v~l~k~~-------~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   82 (108)
T 1q7x_A           10 IFEVELAKND-------NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ   82 (108)
T ss_dssp             EEEEEEESSS-------CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSH
T ss_pred             EEEEEEEECC-------CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            5567787753       68999999     99887656789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         171 VEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++.+++..+..  |.|.|.|....
T Consensus        83 ~~~~~~~~g~~--v~l~v~R~~~~  104 (108)
T 1q7x_A           83 AVETLRNTGQV--VHLLLEKGQSP  104 (108)
T ss_dssp             HHHHHHHTTSE--EEEEEECCCCS
T ss_pred             HHHHHHcCCCe--EEEEEEeCCcc
Confidence            99999987644  99999987643

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.47  E-value=3.1e-13  Score=110.96  Aligned_cols=86  Identities=31%  Similarity=0.511  Sum_probs=75.2

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|.|..      ..+|||++.||.+.   ..+++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|+
T Consensus        21 ~~v~l~k~~------~~~lG~~i~gg~~~---~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   91 (125)
T 3hpk_A           21 GKVTLQKDA------QNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ   91 (125)
T ss_dssp             EEEEEECCT------TSCCCEEEEECSSC---CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEeCC------CCCcCEEEeccCCC---CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456677765      46899999999864   358999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..++.  |.|.|.|...
T Consensus        92 ~~~~~--v~l~v~r~~~  106 (125)
T 3hpk_A           92 EVKGE--VTIHYNKLQA  106 (125)
T ss_dssp             HSCSE--EEEEEEEECS
T ss_pred             cCCCe--EEEEEEECCC
Confidence            98765  9999988543

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=1.2e-12  Score=107.41  Aligned_cols=91  Identities=22%  Similarity=0.316  Sum_probs=76.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+.++.|.|..       .||||+|.||.+.   ..+++|..|.++|+|+++|.|++||+|++|||+.+.++++++++++
T Consensus        19 ~~~~v~l~~~~-------~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~   88 (123)
T 1ueq_A           19 TFLSTTLKKSN-------MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL   88 (123)
T ss_dssp             EEEEEEEECCT-------TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             cEEEEEEEeCC-------CceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45567787764       6899999998753   4589999999999999988899999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |+.......|.|.|.|.....
T Consensus        89 l~~~~~g~~v~l~v~R~~~~~  109 (123)
T 1ueq_A           89 FQSVPIGQSVNLVLCRGYPLP  109 (123)
T ss_dssp             HHTSCTTCEEEEEEEESCCCC
T ss_pred             HHhCCCCCeEEEEEEeCCCCC
Confidence            999652234999999976443

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.47  E-value=1.2e-13  Score=114.55  Aligned_cols=92  Identities=32%  Similarity=0.483  Sum_probs=75.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ....+.|.|..      ..||||+|.|+.+.. ..+.++||..|.++|+|+++|+|++||+|++|||+++.+++|+++++
T Consensus        25 ~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~   98 (127)
T 1wg6_A           25 LTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAME   98 (127)
T ss_dssp             EEEEEECSSST------TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHH
T ss_pred             eEEEEEEeeCC------CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            34455565332      479999999987541 12458999999999999999999999999999999999999999999


Q ss_pred             HHHhc-------CCCCcEEEEEEeCCCC
Q psy4487         174 IIAES-------RQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s-------~~~~~V~LvV~R~~~~  194 (315)
                      +|+.+       ..  .|.|+|.|....
T Consensus        99 ~l~~~~~~~g~~~~--~v~l~v~R~~~~  124 (127)
T 1wg6_A           99 TLRRSMSMEGNIRG--MIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHHHHHHTC--EEEEEEEECSCS
T ss_pred             HHHHhhccccCCCC--EEEEEEEeCCCC
Confidence            99976       33  499999997654

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.47  E-value=1.8e-13  Score=105.75  Aligned_cols=85  Identities=26%  Similarity=0.405  Sum_probs=73.2

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..      ..+|||.+.||.+.   ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.++
T Consensus         5 ~~~v~l~k~~------~~~lG~~i~~~~~~---~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~   75 (90)
T 1qav_A            5 RRRVTVRKAD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL   75 (90)
T ss_dssp             CEEEEEECCT------TTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             cEEEEEEeCC------CCCcCEEEEcccCC---CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4556777754      47999999998764   35899999999999999856999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeC
Q psy4487         176 AESRQEPQVELIVSRR  191 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~  191 (315)
                      +..+..  |.|.|.|.
T Consensus        76 ~~~~~~--v~l~v~r~   89 (90)
T 1qav_A           76 KKTGKE--VVLEVKYM   89 (90)
T ss_dssp             HTCCSE--EEEEEEEC
T ss_pred             HhCCCe--EEEEEEEe
Confidence            987654  99999874

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=1.8e-13  Score=109.57  Aligned_cols=77  Identities=30%  Similarity=0.479  Sum_probs=67.1

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhc----CCCCcEEEEE
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES----RQEPQVELIV  188 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s----~~~~~V~LvV  188 (315)
                      .||||+|.||.+..  ...++|..|.++++|+++|+|++||+|++|||+++.+++|+||+++|+.+    .. ..+.|+|
T Consensus        17 ~glG~~i~gg~~~~--~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~-~~i~l~v   93 (103)
T 1ufx_A           17 ATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR-DYIDFLV   93 (103)
T ss_dssp             SSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSC-SEEEEEE
T ss_pred             CcCCeEEECCCCCC--CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCC-CeEEEEE
Confidence            79999999998753  24569999999999999999999999999999999999999999999985    32 3488888


Q ss_pred             EeCC
Q psy4487         189 SRRI  192 (315)
Q Consensus       189 ~R~~  192 (315)
                      .|..
T Consensus        94 ~r~~   97 (103)
T 1ufx_A           94 TEFN   97 (103)
T ss_dssp             CCCC
T ss_pred             EEcc
Confidence            8765

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=2.4e-13  Score=105.53  Aligned_cols=84  Identities=18%  Similarity=0.359  Sum_probs=72.4

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..      +.+|||+|.++.     ..+++|..|.++|+|++++.|++||+|++|||+++.+++|++++++|+
T Consensus         3 r~V~l~K~~------~~~lG~~i~~~~-----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~   71 (88)
T 1kwa_A            3 RLVQFQKNT------DEPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR   71 (88)
T ss_dssp             EEEEEEECS------SSCCCEEEECSC-----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred             EEEEEEeCC------CCceeEEEEeCC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            456788875      478999999853     247999999999999986779999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ...+  .|.|.|.|...
T Consensus        72 ~~~~--~v~l~v~r~~~   86 (88)
T 1kwa_A           72 EMRG--SITFKIVPSYR   86 (88)
T ss_dssp             HCCE--EEEEEEECCCC
T ss_pred             cCCC--cEEEEEECCcC
Confidence            9876  49999988653

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.46  E-value=2.3e-13  Score=104.38  Aligned_cols=83  Identities=30%  Similarity=0.499  Sum_probs=71.1

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..      ..+|||.+.||.+.   ..+++|..|.++|||++++.|++||+|++|||+++.++++++++.+++
T Consensus         4 ~~v~l~~~~------~~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~   74 (87)
T 4e34_A            4 RKVLLLKED------HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS   74 (87)
T ss_dssp             EEEEEECCT------TBCCCEEEEEEGGG---TEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEECC------CCcccEEEEccCCC---CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456777764      46999999999764   257999999999999985559999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEe
Q psy4487         177 ESRQEPQVELIVSR  190 (315)
Q Consensus       177 ~s~~~~~V~LvV~R  190 (315)
                      +.+..  +.|+|.+
T Consensus        75 ~~~~~--v~l~v~~   86 (87)
T 4e34_A           75 QQRGE--IEFEVVY   86 (87)
T ss_dssp             HCCSE--EEEEEEE
T ss_pred             cCCCe--EEEEEEE
Confidence            87755  8888864

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.46  E-value=7.5e-13  Score=108.70  Aligned_cols=88  Identities=24%  Similarity=0.401  Sum_probs=76.5

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..       .+|||+|.||.+.  ...+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus        25 ~~~~v~l~k~~-------~glG~~l~~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~   95 (124)
T 2daz_A           25 ELHIIELEKDK-------NGLGLSLAGNKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAI   95 (124)
T ss_dssp             EEEEEEEECCS-------SCCCEEEECBSST--TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHH
T ss_pred             ceEEEEEEeCC-------CccCEEEeccCCC--CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35567788763       6899999998754  24699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~  193 (315)
                      ++..+..  |.|+|.|...
T Consensus        96 ~~~~~~~--v~l~v~R~~~  112 (124)
T 2daz_A           96 IKTAPSK--VKLVFIRNED  112 (124)
T ss_dssp             HHHSCSE--EEEEEEECTT
T ss_pred             HHcCCCe--EEEEEEeCCC
Confidence            9988754  9999998753

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.46  E-value=4.7e-13  Score=111.78  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS  167 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t  167 (315)
                      ..++|.|..      ..||||+|.||....         ....|++|..|.++|+|+++| |+.||+|++|||+.+.+++
T Consensus        29 r~v~l~r~~------~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~  101 (132)
T 3l4f_D           29 KTVLLQKKD------SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVG  101 (132)
T ss_dssp             CEEEEECCT------TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSC
T ss_pred             EEEEEEECC------CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            456777754      469999999997631         123489999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         168 FQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       168 ~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +++++.+|+..+..  |.|+|.+...
T Consensus       102 ~~~~~~~l~~~g~~--v~l~v~~~~~  125 (132)
T 3l4f_D          102 HRQVVNMIRQGGNT--LMVKVVMVTR  125 (132)
T ss_dssp             HHHHHHHHHHTTTE--EEEEEECCCC
T ss_pred             HHHHHHHHHcCCCE--EEEEEEECCC
Confidence            99999999997655  9999877653

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.45  E-value=3.9e-13  Score=109.20  Aligned_cols=92  Identities=26%  Similarity=0.349  Sum_probs=76.6

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC---CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~---g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      .+....+.|.|..      ..+|||+|.||.+...   +..|++|..|.++|+|+  +.|++||+|++|||+++.+++|.
T Consensus        12 ~~~~~~v~l~k~~------~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~--~gL~~GD~I~~Vng~~v~~~~~~   83 (117)
T 2csj_A           12 IWEQYTVTLQKDS------KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHS   83 (117)
T ss_dssp             EEEEEEEEEECCS------SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHH
T ss_pred             cceEEEEEEEECC------CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc--ccCCCCCEEEEECCEECCCcCHH
Confidence            3455667788764      3799999999987532   46789999999999997  45999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++.+++..+..  |.|+|.|....
T Consensus        84 ~~~~~l~~~~~~--v~l~v~R~~~~  106 (117)
T 2csj_A           84 FAVQQLRKSGKI--AAIVVKRPRKV  106 (117)
T ss_dssp             HHHHHHHHSCSE--EEEEEEEEEEC
T ss_pred             HHHHHHhcCCCe--EEEEEEECCcc
Confidence            999999987654  99999886543

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.44  E-value=3.2e-13  Score=107.60  Aligned_cols=88  Identities=27%  Similarity=0.378  Sum_probs=74.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      .+..+.|.|..      ..+|||.+.||.+.   ..+++|..|.++|+|+++| +|++||+|++|||+++.++++.+++.
T Consensus        17 ~~~~v~l~~~~------~~~~G~~~~gg~~~---~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~   87 (107)
T 3nfk_A           17 NLVLIRMKPDE------NGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL   87 (107)
T ss_dssp             CCEEEEECCCT------TSCCCEEEEEEGGG---TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEEEEcCC------CCCCCEEEEccCCC---CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHH
Confidence            35666787764      36999999999764   2589999999999999988 59999999999999999999999999


Q ss_pred             HHHhcCC--CCcEEEEEEeC
Q psy4487         174 IIAESRQ--EPQVELIVSRR  191 (315)
Q Consensus       174 iLk~s~~--~~~V~LvV~R~  191 (315)
                      +|+....  ...|.|+|.|+
T Consensus        88 ~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           88 FIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             HHHCGGGSBTTBEEEEEECC
T ss_pred             HHHhccccCCcEEEEEEEcC
Confidence            9998864  12499999874

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.44  E-value=9.6e-13  Score=107.02  Aligned_cols=90  Identities=29%  Similarity=0.524  Sum_probs=75.2

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..++|.|..      ..+|||.|.||.+.  ...|++|..|.++|||+++|+|++||+|++|||+.+.+++|.+++.+|
T Consensus        16 ~~~v~l~~~~------~~~lG~~i~g~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l   87 (119)
T 1x6d_A           16 IHVTILHKEE------GAGLGFSLAGGADL--ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL   87 (119)
T ss_dssp             EEEEEEECCT------TSCCSEEEECCSSS--SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHH
T ss_pred             eEEEEEEeCC------CCccCEEEeCCCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4455677654      47999999998864  236899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +..+.. .+.++|.|....
T Consensus        88 ~~~~~~-~~~l~v~R~~~~  105 (119)
T 1x6d_A           88 RQAREP-RQAVIVTRKLTP  105 (119)
T ss_dssp             HHTTSS-SEEEEEEECCCS
T ss_pred             HhCCCC-eEEEEEEcCCCc
Confidence            988764 266777776644

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=6e-13  Score=103.13  Aligned_cols=83  Identities=29%  Similarity=0.457  Sum_probs=72.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.|..       .+|||.+.||.+.   ..+++|..|.++++|+++|.|++||+|++|||+.+.++++++++.+++.
T Consensus         8 ~v~l~k~~-------~glG~~l~~~~~~---~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~   77 (93)
T 2dkr_A            8 VVELPKTD-------EGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA   77 (93)
T ss_dssp             EEEEECCT-------TCCCEEEECSSSS---SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCC-------CCccEEEecccCC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45677653       7999999998764   3589999999999999987799999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEeCC
Q psy4487         178 SRQEPQVELIVSRRI  192 (315)
Q Consensus       178 s~~~~~V~LvV~R~~  192 (315)
                      ....  |.|.|.|..
T Consensus        78 ~~~~--v~l~v~r~~   90 (93)
T 2dkr_A           78 AQGS--VKLVVRSGP   90 (93)
T ss_dssp             CCSE--EEEEECCCC
T ss_pred             CCCc--EEEEEEeCC
Confidence            7654  999998764

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.43  E-value=1.3e-12  Score=101.96  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=66.3

Q ss_pred             CccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487         113 STLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI  187 (315)
Q Consensus       113 ~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv  187 (315)
                      .+|||+|.||++.     .....|++|..|.++|+|++ | |++||+|++|||+.+.++++.+++.+++..+..  |.|.
T Consensus        13 ~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~   88 (95)
T 1mfg_A           13 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT--VELI   88 (95)
T ss_dssp             SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCSE--EEEE
T ss_pred             CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCe--EEEE
Confidence            3899999998752     12456999999999999998 5 999999999999999999999999999877654  9999


Q ss_pred             EEeCC
Q psy4487         188 VSRRI  192 (315)
Q Consensus       188 V~R~~  192 (315)
                      |.|..
T Consensus        89 v~R~~   93 (95)
T 1mfg_A           89 IVREV   93 (95)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98865

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.43  E-value=2.2e-12  Score=103.33  Aligned_cols=91  Identities=26%  Similarity=0.411  Sum_probs=75.7

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.+..       .||||+|.++.....+..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++++++.+|+
T Consensus        13 ~~~~l~~~~-------~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (111)
T 2koj_A           13 LNIQLKKGT-------EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR   85 (111)
T ss_dssp             EEEEEECBT-------TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EEEEEEECC-------CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345566653       6899999998765445679999999999999998889999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      .......|.|.|.|....
T Consensus        86 ~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           86 STKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             HCCCSSEEEEEEEECCCC
T ss_pred             hCCCCCeEEEEEEeCCCC
Confidence            864223499999987643

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=1.4e-13  Score=110.68  Aligned_cols=91  Identities=21%  Similarity=0.367  Sum_probs=76.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      +..+.|.|..      ..+|||.|.||.+..      ....|++|..|.++|+|+++|+|++||+|++|||+.+.++++.
T Consensus        10 ~~~v~l~k~~------~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   83 (111)
T 1uju_A           10 LRELCIQKAP------GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             SSCEEEECCT------TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             cEEEEEEECC------CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3456777764      469999999998531      3456899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++.+|+..+..  |.|+|.|....
T Consensus        84 ~~~~~l~~~g~~--v~l~v~r~~~~  106 (111)
T 1uju_A           84 EAVQLLRSVGDT--LTVLVCDGFES  106 (111)
T ss_dssp             HHHHHHSSCSSE--EEECCCCCCCC
T ss_pred             HHHHHHHcCCCe--EEEEEEECCCC
Confidence            999999886544  99999887644

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.43  E-value=9.9e-13  Score=106.26  Aligned_cols=85  Identities=19%  Similarity=0.393  Sum_probs=73.4

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..       .||||+|.||.+.   ..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++.+++.++
T Consensus        25 ~~~v~l~~~~-------~glG~~l~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   94 (112)
T 2r4h_A           25 FYTVELERGA-------KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI   94 (112)
T ss_dssp             EEEEEEECBT-------TBTSEEEEECGGG---TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             eEEEEEEcCC-------CccCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567787753       5899999998753   35899999999999999888999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +..+..  |.|.|.|..
T Consensus        95 ~~~g~~--v~l~v~R~~  109 (112)
T 2r4h_A           95 KNGGRR--VRLFLKRGE  109 (112)
T ss_dssp             HTTTTE--EEEEEECCE
T ss_pred             HcCCCe--EEEEEEeCC
Confidence            886544  999998864

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.43  E-value=2.3e-12  Score=106.22  Aligned_cols=94  Identities=23%  Similarity=0.392  Sum_probs=78.5

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      .+....+.|.+..      ..+|||.+.||.+...  ...|++|..|.++|+|+++|.|++||+|++|||+.+.++++++
T Consensus        13 ~~~~~~v~l~~~~------~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   86 (129)
T 2dmz_A           13 LFETYNVELVRKD------GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD   86 (129)
T ss_dssp             CEEEEEEEECCCT------TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHH
T ss_pred             CCcEEEEEEEeCC------CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            3556677785533      4789999999876533  4579999999999999999889999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         171 VEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++.+|+..+..  |.|.|.|....
T Consensus        87 ~~~~l~~~~~~--v~l~v~R~~~~  108 (129)
T 2dmz_A           87 VVEVLRNAGQV--VHLTLVRRKTS  108 (129)
T ss_dssp             HHHHHHHCCSS--EEEEEEEESSS
T ss_pred             HHHHHHcCCCe--EEEEEEeCCcc
Confidence            99999995544  99999887643

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.42  E-value=2.2e-12  Score=106.78  Aligned_cols=90  Identities=26%  Similarity=0.351  Sum_probs=76.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ....++|.|..       .||||.+.||...   ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++|++++++
T Consensus        18 ~~~~v~l~~~~-------~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   87 (129)
T 2kpk_A           18 KFIHTKLRKSS-------RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI   87 (129)
T ss_dssp             EEEEEEEEECS-------SCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             cEEEEEEEECC-------CcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34466777753       6899999998753   3589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+.......|.|.|.|....
T Consensus        88 l~~~~~g~~v~l~v~R~~~~  107 (129)
T 2kpk_A           88 FQSIPIGASVDLELCRGYPL  107 (129)
T ss_dssp             HHHSCTTEEEEEEEEECSCC
T ss_pred             HHhCCCCCeEEEEEEeCCCC
Confidence            99985333599999998743

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.42  E-value=2e-12  Score=101.30  Aligned_cols=86  Identities=28%  Similarity=0.462  Sum_probs=73.5

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.|..       .||||.+.||.+..  ..|++|..|.++|+|+++|.|++||+|++|||+++.++++.+++.+++.
T Consensus         7 ~v~l~~~~-------~~lG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   77 (98)
T 2opg_A            7 TIEISKGR-------TGLGLSIVGGSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ   77 (98)
T ss_dssp             EEEEECBT-------TBTCEEEEECTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEECC-------CcccEEEecCCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45666653       68999999987542  2489999999999999998899999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEeCCCC
Q psy4487         178 SRQEPQVELIVSRRIQP  194 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~~  194 (315)
                      ....  |.|.|.|....
T Consensus        78 ~~~~--v~l~v~R~~~~   92 (98)
T 2opg_A           78 TPQR--VRLTLYRDEAP   92 (98)
T ss_dssp             CCSE--EEEEEEECSSC
T ss_pred             CCCe--EEEEEEcCCCC
Confidence            7744  99999887643

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.42  E-value=2.2e-12  Score=101.15  Aligned_cols=88  Identities=23%  Similarity=0.410  Sum_probs=72.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+.|++.       ..+|||.+.++.+.   ..+++|..|.++++|+++|.|++||+|++|||+.+.+++++++..+|
T Consensus         6 ~~~v~l~~~-------~~~lG~~i~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   75 (97)
T 1n7e_A            6 IYTVELKRY-------GGPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLL   75 (97)
T ss_dssp             EEEEEEECT-------TSCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEeC-------CCCcCEEEEcccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            445566654       36799999987642   25899999999999999988999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~~  195 (315)
                      +..+.  .|.|.|.|.....
T Consensus        76 ~~~g~--~v~l~v~R~~~~~   93 (97)
T 1n7e_A           76 QMAGE--TVTLKIKKQTDAQ   93 (97)
T ss_dssp             HTCCS--EEEEEEECCCCCC
T ss_pred             HcCCC--eEEEEEEeCCCCC
Confidence            86544  4999998876543

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.42  E-value=7e-13  Score=123.51  Aligned_cols=90  Identities=24%  Similarity=0.371  Sum_probs=77.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..|.|.|..      ..||||.|.||.+.   ..|+||..|.+||+|++++.|++||+|++|||+++.+++|++++.+
T Consensus        77 ~~r~V~L~k~~------~~glGf~I~gg~d~---~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~  147 (263)
T 1z87_A           77 QRRRVTVRKAD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA  147 (263)
T ss_dssp             SSEEECCCTTT------TCCCCCEEEEETTT---TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEeCC------CCCEeEEEeeccCC---CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            35667787764      47999999999864   3689999999999999966699999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |+..+..  |.|+|.|.....
T Consensus       148 l~~~g~~--V~L~V~R~~~~~  166 (263)
T 1z87_A          148 LKKTGKE--VVLEVKYMKEVS  166 (263)
T ss_dssp             HHHCCSC--CCEEEECCSSSS
T ss_pred             HhcCCCe--EEEEEEeCcccc
Confidence            9998765  999999976543

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.42  E-value=2.1e-12  Score=99.76  Aligned_cols=86  Identities=27%  Similarity=0.427  Sum_probs=73.5

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ..+..++|.|..     +..+|||.|.+|..    ..|++|..|.++|+|+++| |++||+|++|||+.+.++++.+++.
T Consensus         5 ~~~~~v~l~k~~-----~~~~~G~~~~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~   74 (91)
T 1m5z_A            5 VELHKVTLYKDS-----GMEDFGFSVADGLL----EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVP   74 (91)
T ss_dssp             CEEEEEEEECCT-----TCSSSSEEEEECTT----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             cceEEEEEEECC-----CCCCccEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            356778888764     23689999999864    2589999999999999988 9999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeC
Q psy4487         174 IIAESRQEPQVELIVSRR  191 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~  191 (315)
                      +++..+..  |.|.|.|+
T Consensus        75 ~~~~~g~~--v~l~v~R~   90 (91)
T 1m5z_A           75 LIAESGNK--LDLVISRN   90 (91)
T ss_dssp             HHHTSTTE--EEEEEEEC
T ss_pred             HHHcCCCE--EEEEEEeC
Confidence            99876544  99999885

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.42  E-value=1.2e-12  Score=103.40  Aligned_cols=84  Identities=27%  Similarity=0.529  Sum_probs=72.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|..       .||||.+.||.+    ..|++|..|.++|+|+++|.|++||+|++|||+++.+.++.+++.++
T Consensus        12 ~~~v~l~k~~-------~glG~~~~~~~~----~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (104)
T 3i4w_A           12 PRRIVIHRGS-------TGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   80 (104)
T ss_dssp             CEEEEEECBT-------TBTSEEEEECC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             cEEEEEEeCC-------CccCEEEECCCC----CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4556787763       689999999865    25899999999999999988999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +..+..  |.|+|.|..
T Consensus        81 ~~~~~~--v~l~v~r~~   95 (104)
T 3i4w_A           81 KNAGQT--VTIIAQYKP   95 (104)
T ss_dssp             HTSCSE--EEEEEEECH
T ss_pred             HcCCCe--EEEEEEECc
Confidence            987654  999998863

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.42  E-value=1.6e-12  Score=103.68  Aligned_cols=93  Identities=22%  Similarity=0.414  Sum_probs=76.2

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      +....+.|.+..     ...+|||.+.||.+...  ...+++|..|.++|||+++|.|++||+|++|||+.+.+++++++
T Consensus        11 ~~~~~v~l~r~~-----~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~   85 (108)
T 2jre_A           11 FSLYSVELFREK-----DTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDV   85 (108)
T ss_dssp             CEEEEEEEECCS-----TTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHH
T ss_pred             cEEEEEEEEecC-----CCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            445556675322     24799999999876532  45699999999999999998899999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeCCC
Q psy4487         172 EDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +.+|+..+..  |.|.|.|...
T Consensus        86 ~~~l~~~g~~--v~l~v~R~~~  105 (108)
T 2jre_A           86 VEVLRNAGNP--VRLLLIRRLP  105 (108)
T ss_dssp             HHHHHHHCSE--EEEEEEECCC
T ss_pred             HHHHHcCCCe--EEEEEEeCCc
Confidence            9999886544  9999988653

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.41  E-value=1.6e-12  Score=104.58  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=73.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +.++.|.|..      ..||||.+.+.      ..|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.++
T Consensus         3 ~~~v~L~k~~------~~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~   70 (106)
T 2la8_A            3 KFNVDLMKKA------GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF   70 (106)
T ss_dssp             EEEEEECCBS------SSTTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHH
T ss_pred             EEEEEEEeCC------CCccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4566777654      47899999872      25899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~~  195 (315)
                      +...+.  |.|.|.|.....
T Consensus        71 ~~~~~~--v~l~v~R~~~~~   88 (106)
T 2la8_A           71 KGANGK--VSMEVTRPKPGS   88 (106)
T ss_dssp             HSCBSC--EEEEEEECCSCS
T ss_pred             hCCCCe--EEEEEEeCCCCC
Confidence            988765  999999976444

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.41  E-value=1.5e-12  Score=100.54  Aligned_cols=83  Identities=31%  Similarity=0.404  Sum_probs=71.6

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..       .||||.+.++..    ..|++|..|.++|+|+++| |++||+|++|||+++.+.+|+++.++|+
T Consensus         6 r~v~l~k~~-------~g~G~~~~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   73 (90)
T 2he4_A            6 RLCHLRKGP-------QGYGFNLHSDKS----RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIK   73 (90)
T ss_dssp             EEEEEECBT-------TBCCEEEEECSS----SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred             EEEEEEECC-------CCccEEEEccCC----CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345677764       689999999765    3589999999999999988 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..+..  |.|.|.|...
T Consensus        74 ~~~~~--v~l~v~r~~~   88 (90)
T 2he4_A           74 AREDE--ARLLVVGPST   88 (90)
T ss_dssp             TSSSE--EEEEEECCCC
T ss_pred             cCCCc--EEEEEEccCC
Confidence            87444  9999998754

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=6.3e-13  Score=108.35  Aligned_cols=89  Identities=25%  Similarity=0.313  Sum_probs=75.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..      +.+|||.+.++.+..  ..++||..|.++|+|+++|.|++||+|++|||+++.++++++++++|
T Consensus        16 ~~~v~l~k~~------~~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l   87 (117)
T 1v62_A           16 PLMVEIVKTP------GSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL   87 (117)
T ss_dssp             SEEEEEECCT------TCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHH
T ss_pred             cEEEEEEcCC------CCcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4456787765      468999999986532  24699999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +..+..  |.|.|.|....
T Consensus        88 ~~~g~~--v~l~v~r~~~~  104 (117)
T 1v62_A           88 ASISEK--VRLEILPVPQS  104 (117)
T ss_dssp             HSCSSE--EEEEECCBTTB
T ss_pred             HhCCCe--EEEEEEECCCC
Confidence            975544  99999887643

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.41  E-value=1.5e-12  Score=99.96  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=67.4

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||++.||.+.   ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+....  .|.|.|.|.
T Consensus        11 ~~~lG~~l~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R~   84 (87)
T 2pa1_A           11 PAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPS--PLRLQLDRI   84 (87)
T ss_dssp             SSCCSEEEEEEGGG---TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCS--SEEEEEEEC
T ss_pred             CCccCEEEecccCC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEec
Confidence            46899999999864   3589999999999999877 99999999999999999999999999999874  499999986


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus        85 ~   85 (87)
T 2pa1_A           85 T   85 (87)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.41  E-value=1.9e-12  Score=111.80  Aligned_cols=93  Identities=24%  Similarity=0.333  Sum_probs=80.5

Q ss_pred             CceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          92 GKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        92 g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      |.+.+.+++|.+..       .||||.|.||.+...  +..|+||..|.++|+|+++|+|+.||+|++|||+++.+.++.
T Consensus         2 ~~~~~~~v~l~~~~-------~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~   74 (196)
T 3gsl_A            2 GSMEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS   74 (196)
T ss_dssp             -CEEEEEEEEECBT-------TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             CCcEEEEEEEEECC-------CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence            45677888998874       689999999987522  357999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +++.+++..+..  |.|+|.|...
T Consensus        75 ~~~~~~~~~g~~--v~l~v~r~~~   96 (196)
T 3gsl_A           75 AAVEALKEAGSI--VRLYVMRRKP   96 (196)
T ss_dssp             HHHHHHHTSCSE--EEEEEEEECC
T ss_pred             HHHHHHHhCCCc--EEEEEEecCC
Confidence            999999988755  9999988663

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=2.2e-12  Score=102.62  Aligned_cols=86  Identities=28%  Similarity=0.367  Sum_probs=73.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|..      ..+|||.+.+|.+.   ..+++|..|.++++|+++| |++||+|++|||+.+.++++++++++|
T Consensus        16 ~~~v~l~k~~------~~~lG~~~~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l   85 (104)
T 1wi2_A           16 PRIVTLKKPP------GAQLGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEIL   85 (104)
T ss_dssp             CEEEEECCCT------TCCCSEEEECCSSS---CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEeCC------CCCccEEEEcccCC---CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3567788764      36999999998754   3589999999999999988 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +. ...  |.|.|.|...+
T Consensus        86 ~~-~~~--v~l~v~r~~~~  101 (104)
T 1wi2_A           86 KT-ARE--ISMRVRFFSGP  101 (104)
T ss_dssp             HH-SSS--EEEEEECCCCS
T ss_pred             hC-CCE--EEEEEEECCCC
Confidence            98 444  99999987654

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=103.77  Aligned_cols=88  Identities=23%  Similarity=0.358  Sum_probs=74.3

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.+..       .||||.|.++.+. .+..+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++.++
T Consensus        12 ~~~v~l~~~~-------~g~G~~l~~~~~~-~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   83 (104)
T 2djt_A           12 HFSVELVRGY-------AGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI   83 (104)
T ss_dssp             CEEEEEECCS-------SSCCEEEECCEET-TEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHH
T ss_pred             eEEEEEEeCC-------CCccEEEEeccCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4456777764       6899999998764 2246899999999999999888999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |.|.|.|...
T Consensus        84 ~~~g~~--v~l~v~R~g~   99 (104)
T 2djt_A           84 RAGGPQ--LHLVIRRPLS   99 (104)
T ss_dssp             HHTCSE--EEEEECCCCC
T ss_pred             HcCCCe--EEEEEEECCC
Confidence            886544  9999988653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=5.8e-13  Score=108.32  Aligned_cols=91  Identities=26%  Similarity=0.352  Sum_probs=75.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhccc-CCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLE-GHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~-G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      .+..+.|.|..      ..+|||.|.||.+.   ..+++|..|.++|+|+++ |.|++||+|++|||+++.+++|.+++.
T Consensus        15 ~~~~v~l~k~~------~~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~   85 (119)
T 2cs5_A           15 NLVLIRMKPDE------NGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL   85 (119)
T ss_dssp             CCEEEEECCCS------SSCCSEEEEEEGGG---TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHH
T ss_pred             CeEEEEEEeCC------CCCcCEEEecccCC---CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45667888864      35799999999864   358999999999999998 469999999999999999999999999


Q ss_pred             HHHhcCC--CCcEEEEEEeCCCC
Q psy4487         174 IIAESRQ--EPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~--~~~V~LvV~R~~~~  194 (315)
                      +++..+.  ...|.|+|.|....
T Consensus        86 ~~~~~~~~~~~~v~l~v~R~~~~  108 (119)
T 2cs5_A           86 FIKASCERHSGELMLLVRPNAVY  108 (119)
T ss_dssp             HHHHHHHCCSSCEEEEEECCCCC
T ss_pred             HHHhccccCCCEEEEEEEccccc
Confidence            9998754  12399999987643

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.40  E-value=2.7e-12  Score=99.21  Aligned_cols=81  Identities=33%  Similarity=0.461  Sum_probs=68.4

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|.|..       .||||++.|+.+    ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++
T Consensus         5 r~v~l~r~~-------~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (91)
T 1g9o_A            5 RLCCLEKGP-------NGYGFHLHGEKG----KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIR   72 (91)
T ss_dssp             EEEEEECBT-------TBCCEEEEECTT----CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCC-------CcccEEEEecCC----CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456777764       589999999864    2589999999999999988 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeC
Q psy4487         177 ESRQEPQVELIVSRR  191 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~  191 (315)
                      ...+.  +.+++.+.
T Consensus        73 ~~~~~--~~~~~~~r   85 (91)
T 1g9o_A           73 AALNA--VRLLVVDP   85 (91)
T ss_dssp             TCSSE--EEEEEECC
T ss_pred             cCCCc--EEEEEEcC
Confidence            87754  55555443

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.40  E-value=2.3e-12  Score=103.34  Aligned_cols=85  Identities=26%  Similarity=0.550  Sum_probs=73.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..       .+|||.|.|+.+     .|++|..|.++++|+++|+|++||+|++|||+.+.++++++++.+|
T Consensus        16 ~~~v~l~~~~-------~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   83 (111)
T 2dlu_A           16 VEEVELINDG-------SGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL   83 (111)
T ss_dssp             EEEEEEECCS-------SCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHH
T ss_pred             eEEEEEEeCC-------CccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4556677653       689999998764     4899999999999999988999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +..+..  |.|.|.|....
T Consensus        84 ~~~g~~--v~l~v~R~~~~  100 (111)
T 2dlu_A           84 RNCGNS--VRMLVARDPAG  100 (111)
T ss_dssp             HHHCSE--EEEEEEESCTT
T ss_pred             HhCCCe--EEEEEEeCCCC
Confidence            987644  99999887643

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.40  E-value=1.4e-12  Score=106.50  Aligned_cols=78  Identities=18%  Similarity=0.350  Sum_probs=67.1

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC--CCcEEEEEEe
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ--EPQVELIVSR  190 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~--~~~V~LvV~R  190 (315)
                      .||||+|.||.+...  ..++|..|.++|+|+++|.|++||+|++|||+++.+++|++++++|+....  ...|.|+|.|
T Consensus        28 ~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r  105 (118)
T 1v6b_A           28 GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV  105 (118)
T ss_dssp             SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEe
Confidence            489999999986543  359999999999999997799999999999999999999999999987621  2349999998


Q ss_pred             CC
Q psy4487         191 RI  192 (315)
Q Consensus       191 ~~  192 (315)
                      ..
T Consensus       106 ~~  107 (118)
T 1v6b_A          106 CP  107 (118)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=101.99  Aligned_cols=91  Identities=22%  Similarity=0.342  Sum_probs=72.7

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..      +.+|||.|.+... .....+++|..|.++++|+++|.|++||+|++|||+++.+.++++++++
T Consensus         9 ~~~~v~l~k~~------g~~lG~~i~~~~~-~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~   81 (101)
T 2yt7_A            9 NCREVHLEKRR------GEGLGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAA   81 (101)
T ss_dssp             CCEEEEEECCT------TCCCCEEEEECCC-SSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHH
T ss_pred             ceEEEEEEeCC------CCccCEEEEeCCC-CCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35667777764      3699999985321 1234579999999999999978899999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      |+.......|.|.|.|..
T Consensus        82 l~~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           82 VRETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             HHHTTTSSEEEEEECCCC
T ss_pred             HHhCCCCCeEEEEEEeCC
Confidence            998532245999987753

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.40  E-value=9.3e-13  Score=108.95  Aligned_cols=91  Identities=25%  Similarity=0.390  Sum_probs=75.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF  168 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~  168 (315)
                      .+..+.|.|..     ...+|||+|.||.+..      ....|++|..|.++|+|+++|.|++||+|++|||+++.+.++
T Consensus        29 ~~r~v~l~k~~-----~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~  103 (128)
T 1nf3_C           29 THRRVRLCKYG-----TEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL  103 (128)
T ss_dssp             TCEEEEECCSS-----TTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred             ccEEEEEEECC-----CCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            34567787763     1379999999987531      112489999999999999999899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         169 QDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       169 ~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ++++.+|+..+..  |.|.|.|..
T Consensus       104 ~~~~~~l~~~~~~--v~l~v~r~~  125 (128)
T 1nf3_C          104 DQVTDMMIANSRN--LIITVRPAN  125 (128)
T ss_dssp             HHHHHHHHHTTTS--EEEEEECCC
T ss_pred             HHHHHHHHcCCCe--EEEEEEECC
Confidence            9999999987765  999998865

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=2.8e-12  Score=103.65  Aligned_cols=94  Identities=20%  Similarity=0.347  Sum_probs=75.4

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC-CC---CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED-GT---RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF  168 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~-g~---~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~  168 (315)
                      ......++|.|..      ..+|||.|.||.+... +.   .+++|..|.++++|++++.|++||+|++|||+.+.+++|
T Consensus         8 ~~~~~~v~l~~~~------~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~   81 (114)
T 1uew_A            8 SLQTSDVVIHRKE------NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH   81 (114)
T ss_dssp             CCCCEEEEEECCT------TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCH
T ss_pred             cccceEEEEEECC------CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCH
Confidence            3445667787754      4699999999875422 22   277999999999999834599999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         169 QDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       169 ~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++++++|+.....  |.|.|.|....
T Consensus        82 ~~~~~~l~~~g~~--v~l~v~r~~~~  105 (114)
T 1uew_A           82 ADIVKLIKDAGLS--VTLRIIPQEEL  105 (114)
T ss_dssp             HHHHHHHHHTTTE--EEEEECCCSCC
T ss_pred             HHHHHHHHcCCCe--EEEEEEeCCcC
Confidence            9999999985444  99999887644

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.40  E-value=1.6e-12  Score=102.81  Aligned_cols=92  Identities=24%  Similarity=0.473  Sum_probs=73.5

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCC
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG  165 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g  165 (315)
                      .+..+.+.+...   ....+|||++.||.+..         ....|++|..|.++|+|+++| |++||+|++|||+.+.+
T Consensus         4 ~~~~i~~~~~~~---~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~   79 (104)
T 3sfj_A            4 VVQRVEIHKLRQ---GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM   79 (104)
T ss_dssp             EEEEEEEECEEE---TTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTT
T ss_pred             ceEEEEEEEccC---CCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCC
Confidence            344555655431   22347999999998752         346789999999999999998 99999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         166 KSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       166 ~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+|++++.+|+...+. .|.|.|.|.
T Consensus        80 ~~~~~~~~~l~~~~g~-~v~l~v~R~  104 (104)
T 3sfj_A           80 VTHDQARKRLTKRSEE-VVRLLVTRQ  104 (104)
T ss_dssp             CCHHHHHHHHTCTTCS-EEEEEEEEC
T ss_pred             CCHHHHHHHHHhCCCC-EEEEEEEcC
Confidence            9999999999875442 489998874

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.39  E-value=4.5e-12  Score=103.85  Aligned_cols=96  Identities=21%  Similarity=0.355  Sum_probs=78.6

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCC-CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLL-EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .....++|+|..      ..+|||.|.|+... .....+++|..|.++++|+++|.|++||+|++|||+.+.+++++++.
T Consensus        14 ~~~~~v~l~k~~------~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~   87 (122)
T 1v5q_A           14 TETTEVVLTADP------VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN   87 (122)
T ss_dssp             EEEEEEEECCCS------SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHH
T ss_pred             ceeEEEEEEeCC------CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            345567787764      37999999998532 22456899999999999999888999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ++|+.......|.|.|.|+....
T Consensus        88 ~~l~~~~~g~~v~l~v~R~~~~~  110 (122)
T 1v5q_A           88 QLLRDSSITSKVTLEIEFDVAES  110 (122)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCCS
T ss_pred             HHHHhCCCCCeEEEEEEECCccc
Confidence            99998752234999999987654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.39  E-value=1.4e-12  Score=99.45  Aligned_cols=74  Identities=20%  Similarity=0.333  Sum_probs=66.0

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+.   ..+++|..|.++|||+++| |++||+|++|||+.+.+.++.++..+++.....  |.|.|.|..
T Consensus        11 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~v~R~~   84 (85)
T 1rgw_A           11 GPWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN--LSLTLQKSK   84 (85)
T ss_dssp             SCCCEEECCCGGG---TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC--EEEEEESCC
T ss_pred             CccCEEEEeccCC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence            6899999999865   3579999999999999876 999999999999999999999999999877655  999998853

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.38  E-value=6.7e-12  Score=99.87  Aligned_cols=92  Identities=23%  Similarity=0.321  Sum_probs=76.4

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      .+....++|.|..      ..||||+|.||.+..   .+..+++|..|.++|+|+ .| |++||+|++|||+.+.+.++.
T Consensus         5 ~~~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~   76 (107)
T 2h2b_A            5 IWEQHTVTLHRAP------GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHA   76 (107)
T ss_dssp             CEEEEEEEEECBT------TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHH
T ss_pred             cceeEEEEEEeCC------CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHH
Confidence            3456778888875      479999999987642   245699999999999999 55 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +++..++..+..  |.|.|.|....
T Consensus        77 ~~~~~~~~~g~~--v~l~v~R~~~~   99 (107)
T 2h2b_A           77 FAVQQLRKSGKN--AKITIRRKKGG   99 (107)
T ss_dssp             HHHHHHHTCCSE--EEEEEEEESCC
T ss_pred             HHHHHhhCCCCE--EEEEEEECCCC
Confidence            998888866654  99999887644

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.38  E-value=2.4e-12  Score=102.01  Aligned_cols=83  Identities=25%  Similarity=0.399  Sum_probs=70.2

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      .+.|.+.        .+|||+|.||.+.     .....|++|..|.++|+|++ | |++||+|++|||+.+.++++.+++
T Consensus        14 ~v~l~~~--------~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~   83 (103)
T 1n7t_A           14 RVRVEKD--------PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAV   83 (103)
T ss_dssp             EEEEECS--------SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHH
T ss_pred             EEEEccC--------CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHH
Confidence            4566664        3899999998752     11456999999999999998 5 999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..++..+..  |.|.|.|..
T Consensus        84 ~~~~~~g~~--v~l~v~R~~  101 (103)
T 1n7t_A           84 SLLKTFQNT--VELIIVREV  101 (103)
T ss_dssp             HHHHHCCSE--EEEEEECCC
T ss_pred             HHhhcCCCe--EEEEEEecC
Confidence            999977654  999999875

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.38  E-value=4.7e-12  Score=98.77  Aligned_cols=87  Identities=24%  Similarity=0.449  Sum_probs=72.8

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+.+.+..       .||||+|.||.+..   ....+++|..|.++|||+++| |++||+|++|||+.+.+.++.+++..
T Consensus         6 ~v~~~~~~-------~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~   77 (97)
T 2w4f_A            6 TLTILRQT-------GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   77 (97)
T ss_dssp             EEEEECBT-------TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEeCC-------CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            34566553       69999999998642   245799999999999999988 99999999999999999999999988


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++..+..  |.|.|.|....
T Consensus        78 ~~~~g~~--v~l~v~R~g~~   95 (97)
T 2w4f_A           78 LRGAGTA--VQMRVWRERET   95 (97)
T ss_dssp             HHTSCSE--EEEEEECCSSC
T ss_pred             HhCCCCe--EEEEEEeCCcc
Confidence            8876544  99999987643

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.38  E-value=3.2e-12  Score=100.15  Aligned_cols=86  Identities=26%  Similarity=0.382  Sum_probs=69.9

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEc-CcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIG-GKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvG-Gk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ..++|.|..      ..+|||+|.| |...   .....+++|..|.++|||+++| |++||+|++|||+.+.+++++++.
T Consensus         6 r~v~l~k~~------~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~   78 (96)
T 2ego_A            6 KVLTLEKGD------NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIV   78 (96)
T ss_dssp             EEEEEECCT------TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             EEEEEEeCC------CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            456788764      3699999998 3221   1123589999999999999988 999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeC
Q psy4487         173 DIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+|+..+.  .|.|.|.+.
T Consensus        79 ~~l~~~~~--~v~l~v~~~   95 (96)
T 2ego_A           79 DIIKASGN--VLRLETLYG   95 (96)
T ss_dssp             HHHHHTTT--EEEEEEECC
T ss_pred             HHHHhCCC--eEEEEEEEC
Confidence            99999865  499988764

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.38  E-value=2.3e-12  Score=99.98  Aligned_cols=72  Identities=22%  Similarity=0.451  Sum_probs=63.4

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ...|||.+.+         |+||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|+.+++.  |.|+|.+.
T Consensus        12 ~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~--v~L~v~~~   80 (88)
T 3e17_A           12 NEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGK--LQLVVLRD   80 (88)
T ss_dssp             BCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE--EEEEECCC
T ss_pred             CCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEeCC
Confidence            4589999976         699999999999999999999999999999999999999999999998865  99988776


Q ss_pred             CCC
Q psy4487         192 IQP  194 (315)
Q Consensus       192 ~~~  194 (315)
                      ...
T Consensus        81 ~~~   83 (88)
T 3e17_A           81 LEH   83 (88)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            543

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.38  E-value=2.1e-12  Score=99.52  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=66.7

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+.   ..+++|..|.++|+|+++| |++||+|++|||+++.++++.++..+++..+..  |.|.|.|..
T Consensus        13 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~~   86 (89)
T 2q3g_A           13 APWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGER--LSLGLSRAI   86 (89)
T ss_dssp             SCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE--EEEEEEEEC
T ss_pred             CcccEEEECcCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE--EEEEEEeCC
Confidence            6899999998864   3589999999999999988 999999999999999999999999999887544  999998865


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus        87 ~   87 (89)
T 2q3g_A           87 T   87 (89)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.38  E-value=6.2e-12  Score=103.13  Aligned_cols=88  Identities=27%  Similarity=0.429  Sum_probs=73.6

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.+..       .+|||.|.++.....+..+++|..|.++|||+++|.|++||+|++|||+++.++++++++++|+.
T Consensus        33 ~v~l~~~~-------~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~  105 (121)
T 2kom_A           33 NIQLKKGT-------EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS  105 (121)
T ss_dssp             EEEEECCT-------TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEcCC-------CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence            44566653       68999999987654456789999999999999988899999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEeCC
Q psy4487         178 SRQEPQVELIVSRRI  192 (315)
Q Consensus       178 s~~~~~V~LvV~R~~  192 (315)
                      ......|.|.|.|..
T Consensus       106 ~~~g~~v~l~v~R~g  120 (121)
T 2kom_A          106 TKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CCSSCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEeCC
Confidence            642234999998863

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=100.10  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=66.2

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+.   ..+++|..|.++|||+++| |++||+|++|||+.+.+.++.++..+++..+..  |.|.|.|..
T Consensus        13 ~~~G~~l~~g~~~---~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g   86 (88)
T 2uzc_A           13 APWGFRLQGGKDF---NMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS--LNMTLQRES   86 (88)
T ss_dssp             SCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE--EEEEEECCC
T ss_pred             CcccEEEECcCCC---CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEeCC
Confidence            6899999999864   3589999999999999988 999999999999999999999999999887544  999998864

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.37  E-value=2.2e-12  Score=102.81  Aligned_cols=85  Identities=19%  Similarity=0.348  Sum_probs=71.4

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      .+...+.|.|..      +.+|||.+.++.+     .|++|..|.++|||+++|.|++||+|++|||+++.+++++++.+
T Consensus        11 ~~~~~v~l~K~~------~~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~   79 (97)
T 2ejy_A           11 HMVRLIQFEKVT------EEPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQK   79 (97)
T ss_dssp             --CEEEEEEECS------SSCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHH
T ss_pred             CccEEEEEEeCC------CCCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            345567788875      4789999987532     48999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeC
Q psy4487         174 IIAESRQEPQVELIVSRR  191 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~  191 (315)
                      +|+.....  |.|.|.+.
T Consensus        80 ~l~~~~~~--v~L~V~~~   95 (97)
T 2ejy_A           80 AMKETKGM--ISLKVIPN   95 (97)
T ss_dssp             HHHHCCEE--EEEEEECC
T ss_pred             HHHcCCCe--EEEEEEEC
Confidence            99987544  88888754

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=8.2e-13  Score=104.22  Aligned_cols=87  Identities=23%  Similarity=0.389  Sum_probs=73.5

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.+..       .||||.+.+|.+.   ..+++|..|.++++|+++|.|+.||+|++|||+.+.++++.+++.+++.
T Consensus        14 ~v~l~~~~-------~g~G~~~~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (103)
T 1wfv_A           14 TVDMEKGA-------KGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             ECCEECCT-------TSSSBCCEEETTT---TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEecCC-------CcCCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            44565543       6899999998753   3589999999999999988899999999999999999999999999986


Q ss_pred             cCCCCcEEEEEEeCCCCCC
Q psy4487         178 SRQEPQVELIVSRRIQPKY  196 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~~~p  196 (315)
                      .+..  |.|.|.|.....|
T Consensus        84 ~g~~--v~l~v~R~~~~~~  100 (103)
T 1wfv_A           84 GGRR--VRLLLKRGTGSGP  100 (103)
T ss_dssp             HCSE--ECEEEECTTCSSC
T ss_pred             CCCe--EEEEEEECCCCCC
Confidence            6654  9999999876554

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=1.1e-11  Score=99.13  Aligned_cols=88  Identities=24%  Similarity=0.409  Sum_probs=74.4

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...+.|.+..       .||||.|.||++..   ....+++|..|.+++||+++| |++||+|++|||+.+.++++.+++
T Consensus        16 ~~~~~l~~~~-------~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~   87 (110)
T 1x5q_A           16 ELTLTILRQT-------GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAV   87 (110)
T ss_dssp             EEEEEEECSS-------SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEEecCC-------CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHH
Confidence            4456677653       69999999998642   245799999999999999988 999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..++..+..  |.|.|.|+..
T Consensus        88 ~~~~~~g~~--v~l~v~R~g~  106 (110)
T 1x5q_A           88 EALRGAGTA--VQMRVWRESG  106 (110)
T ss_dssp             HHHHSCCSE--EEEEEEECSS
T ss_pred             HHhhCCCCe--EEEEEEECCc
Confidence            999885544  9999999754

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.36  E-value=4.2e-12  Score=99.18  Aligned_cols=87  Identities=26%  Similarity=0.352  Sum_probs=72.6

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..       .+|||.+.+.... ....|++|..|.++|||+++| |++||+|++|||+.+.+++++++..+|+
T Consensus         5 r~v~l~k~~-------~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (96)
T 2v90_A            5 RCLHLEKGP-------QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQ   75 (96)
T ss_dssp             EEEEEECBT-------TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCC-------CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356777764       5999999984432 234689999999999999988 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      ..+.  .|.|.|.|....
T Consensus        76 ~~g~--~v~l~v~r~~~~   91 (96)
T 2v90_A           76 GQGS--CVSLTVVDPEAD   91 (96)
T ss_dssp             TTTT--EEEEEEECCCTT
T ss_pred             cCCC--EEEEEEECCCCc
Confidence            8743  499999987644

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.36  E-value=7.5e-12  Score=100.19  Aligned_cols=86  Identities=24%  Similarity=0.288  Sum_probs=70.9

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF  168 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~  168 (315)
                      .++|.|..      ..||||.|.|+....         ....|++|..|.++|+|+++| |+.||+|++|||+.+.+++|
T Consensus        10 ~v~l~~~~------~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   82 (109)
T 1q3o_A           10 TVLLQKKD------SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH   82 (109)
T ss_dssp             EEEEECCT------TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEECC------CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            45566543      469999999987531         113489999999999999988 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         169 QDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       169 ~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ++++.+|+..+..  |.|+|.|..
T Consensus        83 ~~~~~~l~~~~~~--v~l~v~~~~  104 (109)
T 1q3o_A           83 RQVVNMIRQGGNT--LMVKVVMVT  104 (109)
T ss_dssp             HHHHHHHHHTTTE--EEEEEEEEE
T ss_pred             HHHHHHHHhCCCE--EEEEEEECC
Confidence            9999999987544  899887764

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.35  E-value=3.5e-12  Score=100.16  Aligned_cols=84  Identities=21%  Similarity=0.345  Sum_probs=71.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ....+.|.+..      ..||||.+.+.      ..|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus         8 ~~~~v~l~~~~------~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~   75 (96)
T 2qkv_A            8 EKFNVDLMKKA------GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYAL   75 (96)
T ss_dssp             CCEEEEEECBT------TBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             ceEEEEEEeCC------CCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34456776543      46899999872      2589999999999999988899999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      ++...+.  |.|.|.|..
T Consensus        76 ~~~~~~~--v~l~v~R~~   91 (96)
T 2qkv_A           76 FKGANGK--VSMEVTRPK   91 (96)
T ss_dssp             HHTCSSE--EEEEEECCC
T ss_pred             HhcCCCc--EEEEEEeCC
Confidence            9988765  999999864

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=4.8e-12  Score=98.75  Aligned_cols=74  Identities=27%  Similarity=0.393  Sum_probs=66.3

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+.   ..+++|..|.+++||+++| |++||+|++|||+.+.++++.+++.+++..+..  |.|.|.|..
T Consensus        18 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g   91 (94)
T 2eeg_A           18 SPWGFRLVGGRDF---SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDH--LTLSVSSGP   91 (94)
T ss_dssp             SCCSCCEECCTTT---TSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSC--EEEEEECCS
T ss_pred             CccCEEEECccCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence            5899999999875   3579999999999999887 999999999999999999999999999886554  999998865

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.35  E-value=9.2e-12  Score=96.62  Aligned_cols=88  Identities=25%  Similarity=0.346  Sum_probs=71.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ...+.|.+..       .+|||.+.++.... ....+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++.+
T Consensus         5 ~~~v~l~~~~-------~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   77 (97)
T 2iwn_A            5 TFDVELTKNV-------QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEV   77 (97)
T ss_dssp             EEEEEEECBT-------TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             EEEEEEecCC-------CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3445666543       68999999986431 234689999999999999988899999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      ++..+..  |.|.|.|..
T Consensus        78 ~~~~~~~--v~l~v~r~g   93 (97)
T 2iwn_A           78 LRHTGQT--VLLTLMRRG   93 (97)
T ss_dssp             HHTCCSE--EEEEEEEEE
T ss_pred             HHcCCCe--EEEEEEeCC
Confidence            9885544  999998764

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=7.5e-12  Score=97.08  Aligned_cols=81  Identities=20%  Similarity=0.321  Sum_probs=69.4

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+.|.|..       .||||.+.++       .+++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+|
T Consensus         4 ~r~v~l~~~~-------~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l   68 (91)
T 2f5y_A            4 YRQITIPRGK-------DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEI   68 (91)
T ss_dssp             EEEEEEECBT-------TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             eEEEEEEeCC-------CCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4556777764       6899999874       368999999999999988 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |.|+|.|...
T Consensus        69 ~~~~~~--v~l~v~R~~~   84 (91)
T 2f5y_A           69 RSCPSE--IILLVWRMVP   84 (91)
T ss_dssp             HTCSSE--EEEEEEECC-
T ss_pred             HcCCCe--EEEEEEeCCC
Confidence            886654  9999998764

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=101.96  Aligned_cols=85  Identities=15%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..       .||||+|.++.      .|.+|.+|.+  +|+ .+.|++||+|++|||+++.+++|+|++++
T Consensus        12 ~~~~V~L~Kg~-------~G~GFsI~~~~------~g~~V~~I~~--~~~-~aGL~~GD~Il~VNG~~v~~~~h~evv~~   75 (113)
T 3soe_A           12 LLVTIPLIKGP-------KGFGFAIADSP------TGQKVKMILD--SQW-CQGLQKGDIIKEIYHQNVQNLTHLQVVEV   75 (113)
T ss_dssp             EEEEEEEECBT-------TBSSEEEEEET------TEEEEEEESC--GGG-STTCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             CEEEEEEEECC-------CcccEEEeCCC------CCcEEEEecC--hHH-hCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45677888864       69999997653      3678999998  344 56699999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |++++...+|.|+|.|.....
T Consensus        76 lk~~~~G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           76 LKQFPVGADVPLLILRGGPPS   96 (113)
T ss_dssp             HHHSCTTCEEEEEEEESSCC-
T ss_pred             HHcCCCCCEEEEEEEECCccC
Confidence            999764446999999988654

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.34  E-value=5.5e-12  Score=98.02  Aligned_cols=83  Identities=25%  Similarity=0.454  Sum_probs=69.2

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..       .+|||.+.++...    .+++|..|.++|||+++| |++||+|++|||+.+.+++|++++.+|+
T Consensus         7 r~v~l~~~~-------~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   74 (95)
T 3r68_A            7 RVVVIKKGS-------NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR   74 (95)
T ss_dssp             EEEEEECBT-------TBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEecCC-------CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346677753       6999999987653    489999999999999998 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..+..  +.+++.|...
T Consensus        75 ~~~~~--~~~~~~r~~~   89 (95)
T 3r68_A           75 KGGDQ--TTLLVLDKEL   89 (95)
T ss_dssp             TTTTE--EEEEEEECC-
T ss_pred             hCCCe--EEEEEECCcc
Confidence            97655  7777766553

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.34  E-value=4.7e-12  Score=110.34  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=67.6

Q ss_pred             CccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487         113 STLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI  187 (315)
Q Consensus       113 ~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv  187 (315)
                      .||||+|.||++.     .....|++|..|.++|+|++ | |++||+|++|||+.+.+++|.+++.+++..+..  |.|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~   77 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT--VELI   77 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE--EEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEE
Confidence            5899999998752     23567999999999999998 6 999999999999999999999999999998765  9999


Q ss_pred             EEeCC
Q psy4487         188 VSRRI  192 (315)
Q Consensus       188 V~R~~  192 (315)
                      |.|..
T Consensus        78 v~r~~   82 (195)
T 2qbw_A           78 IVREV   82 (195)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99943

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.33  E-value=2.1e-12  Score=100.11  Aligned_cols=83  Identities=31%  Similarity=0.426  Sum_probs=68.1

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..       .+|||.+.++..    ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+
T Consensus         5 r~v~l~k~~-------~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (91)
T 2vsp_A            5 KLCRLAKGE-------NGYGFHLNAIRG----LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQ   72 (91)
T ss_dssp             EEEEEECBT-------TBTSCCCBCCTT----CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred             EEEEEEeCC-------CcccEEEEeccC----CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346677764       589999988654    3588999999999999988 9999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..+  ..|.|.|.|...
T Consensus        73 ~~g--~~v~l~v~r~~~   87 (91)
T 2vsp_A           73 SSG--KNVTLLVCGKKA   87 (91)
T ss_dssp             TSC--SEEEEEEEC---
T ss_pred             cCC--CEEEEEEEeCCc
Confidence            874  349999988754

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.33  E-value=1.3e-11  Score=101.72  Aligned_cols=88  Identities=30%  Similarity=0.514  Sum_probs=72.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .+.+.|..      ..+|||.+.|+....      ....|++|..|.++|||+++|.|++||+|++|||+++.+++++++
T Consensus        27 ~v~l~k~~------~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~  100 (123)
T 2iwq_A           27 RVELWREP------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA  100 (123)
T ss_dssp             EEEECCCT------TSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEecC------CCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            34565543      368999999876531      123589999999999999998899999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeCCC
Q psy4487         172 EDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +++|+..+..  |.|.|.|...
T Consensus       101 ~~~l~~~~~~--v~l~v~r~~~  120 (123)
T 2iwq_A          101 VEAIRKAGNP--VVFMVQSIIS  120 (123)
T ss_dssp             HHHHHHCCSS--EEEEEECCCC
T ss_pred             HHHHHcCCCe--EEEEEEECCc
Confidence            9999988665  9999988653

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.33  E-value=9.8e-12  Score=100.53  Aligned_cols=85  Identities=26%  Similarity=0.438  Sum_probs=73.0

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..      ..+|||.+.++      ..+++|..|.++++|+++|.|++||+|++|||+.+.++++++++.+
T Consensus        25 ~~~~v~l~k~~------~~~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~   92 (113)
T 1va8_A           25 TVKIVRIEKAR------DIPLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL   92 (113)
T ss_dssp             ECEEEEEEECT------TCCCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             ceEEEEEEeCC------CCceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45667888875      35899999876      2589999999999999999559999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~  193 (315)
                      |+.....  |.|+|.|...
T Consensus        93 l~~~~~~--v~l~v~r~~~  109 (113)
T 1va8_A           93 LSDMHGT--LTFVLIPSSG  109 (113)
T ss_dssp             HHHCCEE--EEEEEECCCC
T ss_pred             HHcCCCe--EEEEEEECCc
Confidence            9987754  9999987653

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=1.3e-11  Score=97.49  Aligned_cols=79  Identities=30%  Similarity=0.540  Sum_probs=65.7

Q ss_pred             CccceEEEcCcCCCC------CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEE
Q psy4487         113 STLGIKVIGGKLLED------GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL  186 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~------g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~L  186 (315)
                      ..|||.+.|+.....      ...|++|..|.++|||+++|.|++||+|++|||+++.+++++++.++|+..++.  |.|
T Consensus        16 ~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~--v~l   93 (103)
T 2fcf_A           16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP--VVF   93 (103)
T ss_dssp             CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS--EEE
T ss_pred             CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc--EEE
Confidence            589999999765321      235899999999999999888999999999999999999999999999988654  999


Q ss_pred             EEEeCCC
Q psy4487         187 IVSRRIQ  193 (315)
Q Consensus       187 vV~R~~~  193 (315)
                      .|.|...
T Consensus        94 ~v~r~~~  100 (103)
T 2fcf_A           94 MVQSIIS  100 (103)
T ss_dssp             EEECCCC
T ss_pred             EEEECCC
Confidence            9988653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.33  E-value=3.3e-12  Score=97.18  Aligned_cols=80  Identities=24%  Similarity=0.461  Sum_probs=68.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..       .||||.+.++       .+++|..|.++|+|+++| |+.||+|++|||+.+.+.+++++..++
T Consensus         3 ~r~v~l~~~~-------~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l   67 (83)
T 2kv8_A            3 VRSVEVARGR-------AGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLI   67 (83)
T ss_dssp             EEEEEECCCS-------SCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEeCC-------CcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3456777764       6899998764       279999999999999988 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +.....  |.|.|.|..
T Consensus        68 ~~~~~~--v~l~v~R~~   82 (83)
T 2kv8_A           68 GKCSGV--LHMVIAEGV   82 (83)
T ss_dssp             TTCSSC--EEEEEECCC
T ss_pred             HhCCCe--EEEEEEcCC
Confidence            877655  999998864

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.33  E-value=3.8e-12  Score=102.69  Aligned_cols=87  Identities=30%  Similarity=0.454  Sum_probs=73.7

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.+..       .+|||.|.||.+..  ..+++|..|.++|+|+++|+|++||+|++|||+.+.++++.+++.+|+
T Consensus        19 ~~v~l~~~~-------~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   89 (116)
T 2dm8_A           19 MIIEISKGR-------SGLGLSIVGGKDTP--LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR   89 (116)
T ss_dssp             EEEEEECCS-------SCCCCCCBCCTTSS--CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHH
T ss_pred             EEEEEEECC-------CcccEEEeCCCCCC--cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345666653       68999999987542  248999999999999999889999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      .....  |.|.|.|....
T Consensus        90 ~~~~~--v~l~v~R~~~~  105 (116)
T 2dm8_A           90 QTPQK--VRLVVYRDEAH  105 (116)
T ss_dssp             TCCSE--EEEEEECCSSC
T ss_pred             hCCCe--EEEEEEeCCcc
Confidence            87744  99999887644

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.33  E-value=9.8e-12  Score=96.15  Aligned_cols=75  Identities=24%  Similarity=0.415  Sum_probs=66.6

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+.   ..+++|..|.++|||+++| |++||+|++|||+++.+.++.++..+++..+.  .|.|.|.|..
T Consensus        13 ~~~G~~l~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~g   86 (91)
T 2pkt_A           13 GPWGFRLVGGKDF---EQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTD--NLTLTVARSE   86 (91)
T ss_dssp             SCCSEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS--EEEEEEEEEC
T ss_pred             CCCCEEEEccCCC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEECC
Confidence            6899999998764   2589999999999999888 99999999999999999999999999998443  4999999875


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus        87 ~   87 (91)
T 2pkt_A           87 H   87 (91)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.2e-11  Score=96.03  Aligned_cols=91  Identities=27%  Similarity=0.453  Sum_probs=76.4

Q ss_pred             CCCceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          90 ADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        90 ~~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      .+.+..+..+.|.|..      ...|||.+.++.+.   ..|++|..|.++++|+++| |++||+|++|||+.+.+.++.
T Consensus         5 s~~~~~~~~v~l~~~~------~~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~   74 (100)
T 2eeh_A            5 SSGSDIIHSVRVEKSP------AGRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMG   74 (100)
T ss_dssp             CSCCCEECCEEECCCS------SSSCSEEEECCTTT---TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHH
T ss_pred             CCCCCeEEEEEEEECC------CCCccEEEEccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            3445667778888875      24699999997653   3589999999999999988 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +++..++. ...  |.|.|.|...
T Consensus        75 ~~~~~~~~-~~~--v~l~v~R~g~   95 (100)
T 2eeh_A           75 SAVKVLTS-SSR--LHMMVRRMGS   95 (100)
T ss_dssp             HHHHHHHS-CSS--EEEEEEECSC
T ss_pred             HHHHhhcC-CCE--EEEEEEECCc
Confidence            99999987 434  9999998764

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.32  E-value=1.2e-11  Score=100.68  Aligned_cols=86  Identities=31%  Similarity=0.501  Sum_probs=72.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|..      ..+|||.+.||.+.   ..+++|..|.++|+|+++|.|++||+|++|||+.+.+.+++++.++|
T Consensus        25 ~~~V~l~~~~------~~~lG~~l~~~~~~---~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l   95 (114)
T 2gzv_A           25 PGKVTLQKDA------QNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI   95 (114)
T ss_dssp             CEEEEEECCT------TSCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEECC------CCcEeEEEEeCCCC---CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567788765      35699999998753   25899999999999999888999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +...+.  |.|.|.+..
T Consensus        96 ~~~~~~--v~l~v~~~~  110 (114)
T 2gzv_A           96 QEVKGE--VTIHYNKLQ  110 (114)
T ss_dssp             HHCCSE--EEEEEECCC
T ss_pred             HcCCCe--EEEEEEecc
Confidence            987754  888886643

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.32  E-value=1e-11  Score=100.80  Aligned_cols=86  Identities=27%  Similarity=0.489  Sum_probs=74.2

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +....+.|.|..       .||||.+.|+.+    ..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++.+++.
T Consensus        13 ~~~~~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   81 (119)
T 1tp5_A           13 REPRRIVIHRGS-------TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI   81 (119)
T ss_dssp             CSCEEEEEECTT-------SCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHH
T ss_pred             CccEEEEEEECC-------CCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            446677888764       579999999864    258999999999999998889999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCC
Q psy4487         174 IIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~  192 (315)
                      .++..+..  |.|+|.|..
T Consensus        82 ~~~~~~~~--v~l~v~r~~   98 (119)
T 1tp5_A           82 ALKNAGQT--VTIIAQYKP   98 (119)
T ss_dssp             HHHTSCSE--EEEEEEECH
T ss_pred             HHHcCCCe--EEEEEEECC
Confidence            99887655  999998854

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.30  E-value=1.3e-11  Score=98.04  Aligned_cols=82  Identities=29%  Similarity=0.404  Sum_probs=70.4

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.|..      +.+|||.+.++..    ..|++|..|.++|||+++| |+.||+|++|||+++.++++++++.+|+.
T Consensus         4 ~v~l~~~~------~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   72 (106)
T 3ngh_A            4 ESKLSKQE------GQNYGFFLRIEKD----TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK   72 (106)
T ss_dssp             EEEEECCT------TCCCCCEEECCTT----CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCC------CCeeCEEEEEEeC----CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45677664      4689999998754    2589999999999999988 99999999999999999999999999997


Q ss_pred             cCCCCcEEEEEEeCC
Q psy4487         178 SRQEPQVELIVSRRI  192 (315)
Q Consensus       178 s~~~~~V~LvV~R~~  192 (315)
                      .+..  |.|.|.|..
T Consensus        73 ~g~~--v~l~v~r~~   85 (106)
T 3ngh_A           73 SGNS--VTLLVLDGD   85 (106)
T ss_dssp             TTTE--EEEEEECHH
T ss_pred             CCCE--EEEEEEECC
Confidence            6654  999998865

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.7e-12  Score=98.93  Aligned_cols=76  Identities=26%  Similarity=0.382  Sum_probs=66.5

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+..   .+++|..|.+++||+++|.|++||+|++|||+++.+. +.+++.+++.....  |.|+|.|..
T Consensus        21 ~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~--v~l~v~R~~   94 (100)
T 2edp_A           21 APWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRI--LKLIVRRRN   94 (100)
T ss_dssp             SCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSS--CEEEEEECC
T ss_pred             CCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCe--EEEEEEeCC
Confidence            58999999987642   4799999999999999956999999999999999986 89999999987654  999999976


Q ss_pred             CC
Q psy4487         193 QP  194 (315)
Q Consensus       193 ~~  194 (315)
                      ..
T Consensus        95 ~~   96 (100)
T 2edp_A           95 SG   96 (100)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=1.2e-11  Score=97.84  Aligned_cols=83  Identities=25%  Similarity=0.466  Sum_probs=70.8

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|.|..       .||||.+.++.+    ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++++++.+|+
T Consensus         8 r~v~l~k~~-------~g~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (102)
T 2d90_A            8 RVVVIKKGS-------NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR   75 (102)
T ss_dssp             EEEEEECCS-------SSSSCEEEECSS----SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             EEEEEeeCC-------CCccEEEEeecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456777764       689999998653    3589999999999999988 9999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..+..  |.|.|.|...
T Consensus        76 ~~g~~--v~l~v~r~~~   90 (102)
T 2d90_A           76 KGGDQ--TTLLVLDKEA   90 (102)
T ss_dssp             HSTTE--EEEEECSTTC
T ss_pred             cCCCE--EEEEEEECCC
Confidence            86544  9999977653

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=4.9e-12  Score=98.71  Aligned_cols=77  Identities=23%  Similarity=0.402  Sum_probs=68.3

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||++.||.+.   ..|++|..|.+++||+++| |++||+|++|||+.+.+++|+++.++|+.....  |.|.|.|.
T Consensus        15 ~~~lG~~l~~g~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~--v~l~v~R~   88 (94)
T 1vb7_A           15 PAPWGFRISGGRDF---HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP--LRLQLDRS   88 (94)
T ss_dssp             SSCCSBCCEEETTT---TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS--EEEEEECC
T ss_pred             CCCccEEEecccCC---CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc--EEEEEEEC
Confidence            36899999998764   3589999999999999887 999999999999999999999999999987744  99999997


Q ss_pred             CCC
Q psy4487         192 IQP  194 (315)
Q Consensus       192 ~~~  194 (315)
                      ...
T Consensus        89 g~~   91 (94)
T 1vb7_A           89 SGP   91 (94)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            643

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=6.7e-12  Score=97.87  Aligned_cols=72  Identities=19%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.+.      ..+++|..|.++++|+++|.|++||+|++|||+++ +.+++++.++|+.....  |.|.|.|.
T Consensus        17 ~~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~--v~l~v~~~   87 (91)
T 2e7k_A           17 GEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS--VILKILSG   87 (91)
T ss_dssp             TCCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS--BCEEEECC
T ss_pred             CCcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe--EEEEEEEC
Confidence            47899999982      25899999999999999888999999999999999 99999999999987654  89988875


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus        88 ~   88 (91)
T 2e7k_A           88 P   88 (91)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=1.3e-11  Score=102.92  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+.|.+..       .||||.+.+.      ..+++|..|.++|||+++|.|++||+|++|||+.+.+.+|++++++|
T Consensus        28 ~~~~~l~k~~-------~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l   94 (126)
T 1wif_A           28 VIQTKLTVGN-------LGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLL   94 (126)
T ss_dssp             EEEEEEECCT-------TCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHH
T ss_pred             eEEEEEecCC-------ceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            4455677654       6899999873      24799999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +.......|.|.|.|+.
T Consensus        95 ~~~~~G~~v~l~V~R~~  111 (126)
T 1wif_A           95 QNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             TSCCSSCEEEEEEESSS
T ss_pred             hcCCCCCEEEEEEEECC
Confidence            98543345999999983

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.29  E-value=2.2e-11  Score=106.74  Aligned_cols=94  Identities=20%  Similarity=0.356  Sum_probs=79.1

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ...+++|.|..      ..||||++.||.+.. ....+++|..|.++|||+++|.|+.||+|++|||+.+.+++|+++..
T Consensus         6 ~~~~v~l~~~~------~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~   79 (196)
T 1p1d_A            6 ETTEVVLTADP------VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ   79 (196)
T ss_dssp             EEEEEEEECBT------TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHH
T ss_pred             EEEEEEEEeCC------CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45567888765      479999999997642 24678999999999999998889999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +|+.......|.|.|.|....
T Consensus        80 ~l~~~~~g~~v~l~v~R~~~~  100 (196)
T 1p1d_A           80 LLRDSSITSKVTLEIEFDVAE  100 (196)
T ss_dssp             HHHTCCSSSEEEEEEEECSCS
T ss_pred             HHHhCCCCCeEEEEEEecCCC
Confidence            999885223599999987753

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.28  E-value=4.1e-12  Score=100.74  Aligned_cols=75  Identities=21%  Similarity=0.359  Sum_probs=66.8

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||+|.||.+.   ..+++|..|.++|+|+++| |++||+|++|||+.+.++++.+++.+++.....  |.|.|.|..
T Consensus        15 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g   88 (103)
T 1wf7_A           15 APWGFRLQGGKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS--LNMTLQRAS   88 (103)
T ss_dssp             SCCSCCEEEETTT---TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE--EEEEECCCS
T ss_pred             CccCEEEeccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence            6899999999865   3579999999999999988 999999999999999999999999999887544  999998865


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus        89 ~   89 (103)
T 1wf7_A           89 A   89 (103)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=8.1e-12  Score=100.02  Aligned_cols=87  Identities=26%  Similarity=0.498  Sum_probs=74.5

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ......++|.|..       .+|||.|.++.+    ..+++|..|.++++|+++|.|++||+|++|||+.+.+.++.+++
T Consensus        13 ~~~~~~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~   81 (113)
T 1um7_A           13 AREPRKIILHKGS-------TGLGFNIVGGED----GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAA   81 (113)
T ss_dssp             CCSEEEEEEECCS-------SCSSBCCBCCST----TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CCceEEEEEEECC-------CcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            3456778888764       689999998864    35899999999999999888999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+++.....  |.|+|.|..
T Consensus        82 ~~~~~~~~~--v~l~v~r~~   99 (113)
T 1um7_A           82 AALKRAGQS--VTIVAQYRP   99 (113)
T ss_dssp             HHHHSCCSE--EEEEEECCH
T ss_pred             HHHHhCCCc--EEEEEEECc
Confidence            999876644  999998754

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.28  E-value=2e-11  Score=107.00  Aligned_cols=81  Identities=22%  Similarity=0.298  Sum_probs=70.9

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCC--CCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG--KSFQDVEDIIAESRQEPQVELIVS  189 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g--~t~~eav~iLk~s~~~~~V~LvV~  189 (315)
                      ..+|||+|.||.+...+ .|++|..|.++|+|+++|+|+.||+|++|||+.+.+  ++|.+++.+++..... .|.|.|.
T Consensus        28 ~~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~-~v~l~v~  105 (206)
T 3r0h_A           28 KKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK-AVTLTVF  105 (206)
T ss_dssp             TSCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSS-EEEEEEE
T ss_pred             CCCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCC-ceEEEEE
Confidence            37999999999976432 589999999999999999999999999999999999  9999999999887642 3899999


Q ss_pred             eCCCC
Q psy4487         190 RRIQP  194 (315)
Q Consensus       190 R~~~~  194 (315)
                      |....
T Consensus       106 R~~~~  110 (206)
T 3r0h_A          106 RADPP  110 (206)
T ss_dssp             CCSSC
T ss_pred             ecccC
Confidence            87654

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.28  E-value=4.2e-11  Score=91.98  Aligned_cols=83  Identities=23%  Similarity=0.400  Sum_probs=66.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+.|.|..       .||||.+.++.+    ..+++|..+ +++||+ +| |++||+|++|||+.+.++++++++.+|
T Consensus         4 ~~~v~l~k~~-------~g~G~~~~~~~~----~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l   69 (88)
T 3bpu_A            4 LITVHIVKGP-------MGFGFTIADSPG----GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDML   69 (88)
T ss_dssp             EEEEEEECBT-------TBSSCEEEECTT----SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred             EEEEEEEcCC-------CceeEEEEecCC----CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            4566777764       699999997643    258999997 999999 65 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      ++......|.|.|.|..
T Consensus        70 ~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           70 VESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             HTSCTTCEEEEEEEEEC
T ss_pred             HhCCCCCEEEEEEEeCC
Confidence            86433235999998864

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.28  E-value=8.6e-12  Score=109.75  Aligned_cols=86  Identities=27%  Similarity=0.395  Sum_probs=74.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..      ..||||.+.||.+.   ..+++|..|.+||+|+++| |++||+|++|||+++.++++++++.+
T Consensus        84 ~~~~v~l~k~~------~~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~  153 (192)
T 3k1r_A           84 KLKEVRLDRLH------PEGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINL  153 (192)
T ss_dssp             SCEEEEEETTS------TTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred             ceEEEEEEeCC------CCceeEEEEccccc---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35567888864      46999999999753   3589999999999999998 99999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~  193 (315)
                      |+. +..  |.|+|.|...
T Consensus       154 l~~-~~~--v~l~v~r~g~  169 (192)
T 3k1r_A          154 IRT-EKT--VSIKVRHIGL  169 (192)
T ss_dssp             HTS-SSE--EEEEEEECCE
T ss_pred             HcC-CCe--EEEEEEECCc
Confidence            988 444  9999998754

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.28  E-value=1.6e-11  Score=96.17  Aligned_cols=81  Identities=33%  Similarity=0.467  Sum_probs=67.7

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.+..       .||||.+.++.+    ..|++|..|.++|||+++| |++||+|++|||+.+.+++++++.++|+.
T Consensus        12 ~~~l~~~~-------~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (98)
T 2jxo_A           12 LCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (98)
T ss_dssp             EEEEECTT-------TCCCEEEECCCS----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEeCC-------CcccEEEEecCC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34566653       689999998764    2489999999999999988 99999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEeC
Q psy4487         178 SRQEPQVELIVSRR  191 (315)
Q Consensus       178 s~~~~~V~LvV~R~  191 (315)
                      ..+. .+.|+|.|.
T Consensus        80 ~~~~-~~~l~v~R~   92 (98)
T 2jxo_A           80 GGDE-TKLLVVDRE   92 (98)
T ss_dssp             TTTE-EEEEECCHH
T ss_pred             CCCc-EEEEEEECC
Confidence            8543 356777664

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.27  E-value=2.2e-11  Score=95.60  Aligned_cols=79  Identities=25%  Similarity=0.340  Sum_probs=66.4

Q ss_pred             CCccceEEEcCcCCCC----CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487         112 SSTLGIKVIGGKLLED----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI  187 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~----g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv  187 (315)
                      ..+|||++.++.....    -..|++|..|.++|||+++| |+.||+|++|||+.+.++++++++.+|+..+..  |.|.
T Consensus        12 ~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~--v~l~   88 (99)
T 3khf_A           12 GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK--ISLR   88 (99)
T ss_dssp             CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE--EEEE
T ss_pred             CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCE--EEEE
Confidence            4799999987654211    11367899999999999988 999999999999999999999999999977655  9999


Q ss_pred             EEeCCC
Q psy4487         188 VSRRIQ  193 (315)
Q Consensus       188 V~R~~~  193 (315)
                      |.|...
T Consensus        89 v~r~~~   94 (99)
T 3khf_A           89 TTALEN   94 (99)
T ss_dssp             EECSCS
T ss_pred             EEECCC
Confidence            998654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.27  E-value=2e-11  Score=102.79  Aligned_cols=97  Identities=23%  Similarity=0.430  Sum_probs=76.2

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeC
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM  163 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l  163 (315)
                      +..+..+.|.+...   .+..+|||++.||.+..         ....|++|..|.++|||+++| |++||+|++|||+.+
T Consensus        21 ~~~~~~v~l~~~~~---~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v   96 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQ---GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDM   96 (139)
T ss_dssp             -CEEEEEEEECEEE---TTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEEC
T ss_pred             CCceEEEEEEEcCC---CCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEc
Confidence            33556677776531   12348999999987632         235799999999999999988 999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         164 RGKSFQDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       164 ~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .++++++++.+|+...+ ..|.|.|.|....
T Consensus        97 ~~~~~~~~~~~l~~~~g-~~v~l~v~R~g~~  126 (139)
T 2vz5_A           97 TMVTHDQARKRLTKRSE-EVVRLLVTRQSLQ  126 (139)
T ss_dssp             TTCCHHHHHHHHCCTTC-SEEEEEEEECC--
T ss_pred             CCCCHHHHHHHHHhCCC-CEEEEEEEECCEE
Confidence            99999999999987443 3499999997644

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-11  Score=97.53  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=71.3

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|.       ..+|||.+.++..    ..|++|..|.++|+|+++| |++||+|++|||+++.++++.+++.+++
T Consensus        10 r~v~l~k~-------~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~   77 (106)
T 2eei_A           10 RLCYLVKE-------GGSYGFSLKTVQG----KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVK   77 (106)
T ss_dssp             EEEEEECC-------SSSCSCCEECCSS----CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEC-------CCCCCEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567774       3799999998653    3689999999999999988 9999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      .....  +.|+|.|....
T Consensus        78 ~~~~~--v~l~v~r~~~~   93 (106)
T 2eei_A           78 KSGSR--VMFLLVDKETD   93 (106)
T ss_dssp             HHCSE--EEEEECCTTTS
T ss_pred             hCCCe--EEEEEEcCchh
Confidence            87654  99999887644

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2.6e-11  Score=95.30  Aligned_cols=84  Identities=20%  Similarity=0.332  Sum_probs=70.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ....+.|.|...     ..+|||.+.|       ..+++|..|.++|+|+  +.|++||+|++|||+++.++++.+++.+
T Consensus         8 ~~~~v~l~~~~~-----~~~~G~~l~~-------~~~~~V~~V~~~spA~--agL~~GD~Il~ing~~v~~~~~~~~~~~   73 (96)
T 2edv_A            8 VRHTVKIDKDTL-----LQDYGFHISE-------SLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDI   73 (96)
T ss_dssp             EEEEEEECCCSS-----SCSCSBCCCS-------SSSCBCCCBCSSSSST--TTSCTTCBEEEESSCBSTTCCHHHHHHH
T ss_pred             ccEEEEEEECCC-----CCcccEEEec-------CCCeEEEEECCCCchh--hCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345567877642     2489999987       2489999999999996  5599999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++..+..  |.|+|.|+...
T Consensus        74 ~~~~g~~--v~l~v~R~~~~   91 (96)
T 2edv_A           74 LREAEDS--LSITVVRCTSS   91 (96)
T ss_dssp             HHHCSSC--EEEEEEECCCC
T ss_pred             HHcCCCe--EEEEEEECCCC
Confidence            9986655  99999998743

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.24  E-value=6.5e-11  Score=92.24  Aligned_cols=79  Identities=25%  Similarity=0.397  Sum_probs=66.8

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..++|.|..       .+|||.+.+.       .+++|..|.+++||+++| |++||+|++|||+.+.++++.+++..++
T Consensus        10 r~v~l~~~~-------~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   74 (93)
T 2dls_A           10 RCVIIQKDQ-------HGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK   74 (93)
T ss_dssp             EEEEEECSS-------SSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT
T ss_pred             EEEEEEeCC-------CceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc
Confidence            345677754       6899999863       479999999999999988 9999999999999999999999988887


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      . .  ..|.|.|.|+..
T Consensus        75 ~-g--~~v~l~v~R~~~   88 (93)
T 2dls_A           75 S-G--AYVALTLLGSSS   88 (93)
T ss_dssp             S-S--SEEEEEEECCCC
T ss_pred             C-C--CEEEEEEEECCC
Confidence            3 4  349999998764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.23  E-value=4e-11  Score=125.03  Aligned_cols=91  Identities=23%  Similarity=0.315  Sum_probs=78.5

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .....+.|.|..       .||||+|.||.+..  .+..|++|..|.+||+|+++|+|+.||+|++|||+++.+++|.++
T Consensus        58 ~~~~~v~l~k~~-------~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~  130 (721)
T 2xkx_A           58 MEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA  130 (721)
T ss_pred             ceEEEEEEEeCC-------CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            445567787764       59999999998752  346799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeCCC
Q psy4487         172 EDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +.+|+.++..  |.|+|.|...
T Consensus       131 ~~~l~~~g~~--v~l~v~R~~~  150 (721)
T 2xkx_A          131 VEALKEAGSI--VRLYVMRRKP  150 (721)
T ss_pred             HHHhhccccc--cceEEEeccc
Confidence            9999987755  9999988753

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.23  E-value=4.7e-11  Score=103.02  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=69.4

Q ss_pred             CccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         113 STLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       113 ~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      .+|||.+.++....  ....|++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++.+..  |.|+|.|
T Consensus       111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~--v~l~v~R  188 (196)
T 3gsl_A          111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV--VYLKVAK  188 (196)
T ss_dssp             TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEE--EEEEEEE
T ss_pred             CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCe--EEEEEeC
Confidence            58999999987542  2346899999999999999999999999999999999999999999999987654  9999998


Q ss_pred             CCC
Q psy4487         191 RIQ  193 (315)
Q Consensus       191 ~~~  193 (315)
                      +..
T Consensus       189 ~~~  191 (196)
T 3gsl_A          189 PSN  191 (196)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            764

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.23  E-value=9.9e-12  Score=98.65  Aligned_cols=80  Identities=23%  Similarity=0.390  Sum_probs=69.3

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.+|.+.   ..+++|..|.++++|+++| |++||+|++|||+.+.+++++++.++|+....  .|.|.|.|..
T Consensus        15 ~~lG~~l~~g~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~g   88 (103)
T 1v5l_A           15 APWGFRLSGGIDF---NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASY--QLCLKIDRAE   88 (103)
T ss_dssp             SCCSBCCEEETTT---TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCS--EEECEECCCT
T ss_pred             CCcCEEEeccccC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC--eEEEEEEECC
Confidence            5899999998764   2589999999999999887 99999999999999999999999999988743  4999999887


Q ss_pred             CCCCCC
Q psy4487         193 QPKYAP  198 (315)
Q Consensus       193 ~~~p~p  198 (315)
                      ...+.+
T Consensus        89 ~~~~~~   94 (103)
T 1v5l_A           89 TRLWSP   94 (103)
T ss_dssp             TTTSCS
T ss_pred             eEccCC
Confidence            655443

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.22  E-value=1.3e-10  Score=93.08  Aligned_cols=87  Identities=20%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      .++.|.+..      ..||||.+.++.+    ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++..+|+
T Consensus         3 ~~v~l~~~~------~~glG~~~~~~~~----~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (112)
T 1qau_A            3 ISVRLFKRK------VGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR   72 (112)
T ss_dssp             EEEEEECBT------TTBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EEEEEEcCC------CCceeEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456676653      3689999998653    358999999999999999844999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      ...+ ..|.|.|.|....
T Consensus        73 ~~~g-~~v~l~v~R~g~~   89 (112)
T 1qau_A           73 GIAS-ETHVVLILRGPEG   89 (112)
T ss_dssp             HSCS-SSEEEEEEECCTT
T ss_pred             hCCC-CcEEEEEEeCCcc
Confidence            8654 3499999997643

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.22  E-value=5.5e-11  Score=94.66  Aligned_cols=86  Identities=26%  Similarity=0.392  Sum_probs=66.9

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +....+.+.|..    ....+|||+|.++..  .+..+++|..|.++|+|+++| |+.||+|++|||+.+.+++++++.+
T Consensus         5 ~~~~~v~i~k~~----~~~~~~Gf~v~~~~~--~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~   77 (94)
T 3kzd_A            5 KVTHSIHIEKSD----TAADTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKD   77 (94)
T ss_dssp             CEEEEEEEEC----------CCSEEEEEECS--SSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHH
T ss_pred             cceeEEEEEeCC----CCcCCcCEEEEecCC--CCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            345566777764    234689999988543  234689999999999999987 9999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEe
Q psy4487         174 IIAESRQEPQVELIVSR  190 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R  190 (315)
                      ++++.    .+.|+|+.
T Consensus        78 ~l~~~----~l~ltV~~   90 (94)
T 3kzd_A           78 FLSQP----SLGLLVRT   90 (94)
T ss_dssp             HHHSS----EEEEEEEE
T ss_pred             HHhCC----eEEEEEEe
Confidence            99853    37787765

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.22  E-value=6.9e-11  Score=95.98  Aligned_cols=82  Identities=12%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|+|..       .+|||.+.|+       .+++|..|.++++|+++| |+.||+|++|||+++.++++++++++|+
T Consensus        25 r~v~l~k~~-------~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~   89 (109)
T 2vsv_A           25 RSIRFTAEE-------GDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLK   89 (109)
T ss_dssp             EEEEECCGG-------GCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCC-------CceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456787753       7899999764       368999999999999887 9999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      ..++. .|.|.|.|....
T Consensus        90 ~~~~~-~v~l~V~~~~~~  106 (109)
T 2vsv_A           90 SFGED-EIEMKVVSLLDE  106 (109)
T ss_dssp             TTTTS-CEEEEEESCC--
T ss_pred             hCCCC-eEEEEEEECCCc
Confidence            87653 399999887643

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.86  E-value=1e-12  Score=106.90  Aligned_cols=83  Identities=31%  Similarity=0.524  Sum_probs=69.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..++|.|..      ..+|||.+.||.+..   .|++|..|.++|+|++++.|++||+|++|||+++.+.++++++.+|
T Consensus        28 ~~~v~l~k~~------~~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l   98 (112)
T 2lob_A           28 IRKVLLLKED------HEGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL   98 (112)
Confidence            3455666654      479999999987642   5899999999999998455999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEE
Q psy4487         176 AESRQEPQVELIVS  189 (315)
Q Consensus       176 k~s~~~~~V~LvV~  189 (315)
                      +..+..  |.|.|.
T Consensus        99 ~~~~~~--v~l~V~  110 (112)
T 2lob_A           99 SQQRGE--IEFEVV  110 (112)
Confidence            887755  777664

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.22  E-value=7.1e-11  Score=103.55  Aligned_cols=86  Identities=21%  Similarity=0.271  Sum_probs=72.9

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.+..      ..+|||.|.||.+.   ..+++|..|.++|+|++++.|+.||+|++|||+.+.+++|.+++.+++
T Consensus         9 ~~v~l~~~~------~~~lG~~i~~~~~~---~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (200)
T 2qt5_A            9 TVVELMKKE------GTTLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK   79 (200)
T ss_dssp             EEEEEECCT------TCCCCEEEECCTTS---SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EEEEEEeCC------CCCCCEEEecccCC---CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345666543      47999999999764   357999999999999998569999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCC
Q psy4487         177 ESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~  193 (315)
                      ..+..  |.|.|.|+..
T Consensus        80 ~~g~~--v~l~v~R~~~   94 (200)
T 2qt5_A           80 NVGER--VVLEVEYELP   94 (200)
T ss_dssp             TCCSE--EEEEEEEECC
T ss_pred             hCCCe--EEEEEeccCC
Confidence            87654  9999988653

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.21  E-value=4.6e-11  Score=94.78  Aligned_cols=82  Identities=26%  Similarity=0.362  Sum_probs=67.1

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCC----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLL----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      .++|.|..      ..+|||.|.+....    .....+++|..|.++++|+++| |++||+|++|||+.+.+++++++++
T Consensus        18 ~v~l~~~~------~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~   90 (104)
T 2z17_A           18 LVTVEKQD------NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVD   90 (104)
T ss_dssp             EEEEECCT------TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHH
T ss_pred             EEEEEeCC------CCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Confidence            34577754      35899999984321    1234699999999999999988 9999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEE
Q psy4487         174 IIAESRQEPQVELIV  188 (315)
Q Consensus       174 iLk~s~~~~~V~LvV  188 (315)
                      +|+...+.  |.|.|
T Consensus        91 ~l~~~~~~--v~l~v  103 (104)
T 2z17_A           91 LIRSSGNL--LTIET  103 (104)
T ss_dssp             HHHHTTTE--EEEEC
T ss_pred             HHHhCCCc--EEEEE
Confidence            99998653  77765

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.20  E-value=4e-11  Score=94.79  Aligned_cols=80  Identities=23%  Similarity=0.362  Sum_probs=68.3

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.+..       .+|||.+.++       .+++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+|+.
T Consensus        18 ~v~l~~~~-------~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~   82 (100)
T 1whd_A           18 QITIRRGK-------DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS   82 (100)
T ss_dssp             EEEEECCS-------SSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEECCC-------CeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            35566543       6899998764       378999999999999988 99999999999999999999999999998


Q ss_pred             cCCCCcEEEEEEeCCCC
Q psy4487         178 SRQEPQVELIVSRRIQP  194 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~~  194 (315)
                      ....  |.|.|.|...+
T Consensus        83 ~~~~--v~l~v~R~~~~   97 (100)
T 1whd_A           83 CPSE--IILLVWRVSGP   97 (100)
T ss_dssp             CSSE--EEEEEEECCSS
T ss_pred             CCCe--EEEEEEECCCC
Confidence            7654  99999997654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=8.9e-11  Score=91.79  Aligned_cols=66  Identities=26%  Similarity=0.442  Sum_probs=59.1

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      ..+|||.+.+|          +|..|.++|+|+++| |++||+|++|||+++.+.++++++++|+..+..  |.|.|.+
T Consensus        23 ~~~lG~~~~~G----------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~--v~l~v~p   88 (90)
T 1y7n_A           23 RYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE--IHMKTMP   88 (90)
T ss_dssp             TSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE--EEEEEEC
T ss_pred             ccccCeEecCC----------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEE
Confidence            47899999764          799999999999988 999999999999999999999999999987544  8888865

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.19  E-value=8.7e-11  Score=96.96  Aligned_cols=74  Identities=22%  Similarity=0.397  Sum_probs=65.0

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||.+.+|.+     .|++|..|.++|||+++| |++||+|++|||+.+.+.++++++.+|+.......|.|+|.|..
T Consensus        39 ~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           39 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             SCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            689999998764     589999999999999988 99999999999999999999999999986433345999998864

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=2.3e-10  Score=90.06  Aligned_cols=84  Identities=19%  Similarity=0.336  Sum_probs=66.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.+..       .||||.|.++.      .|++|..|.++  |+. +.|++||+|++|||+++.+++|++++++|
T Consensus        11 ~~~v~l~~~~-------~g~G~~i~~~~------~Gv~V~~v~~~--a~~-aGL~~GD~I~~vng~~v~~~~~~~~~~~l   74 (96)
T 1ujv_A           11 LMTLTIVKGA-------QGFGFTIADSP------TGQRVKQILDI--QGC-PGLCEGDLIVEINQQNVQNLSHTEVVDIL   74 (96)
T ss_dssp             CEEEEEECCS-------SSSSEEEEEET------TEEEEEEESCG--GGS-TTCCSSCEEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEEEEEeCC-------CceeEEEEcCC------CCEEEEEEecc--ccc-CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4455677654       69999997532      37999999994  554 45999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~~  195 (315)
                      +.......|.|+|.|.....
T Consensus        75 ~~~~~g~~v~l~v~R~g~~~   94 (96)
T 1ujv_A           75 KDCPIGSETSLIIHRGSGPS   94 (96)
T ss_dssp             HHSCTTSEEEEEEECCSSCS
T ss_pred             HcCCCCCEEEEEEEECCCCC
Confidence            99752235999999976543

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.18  E-value=9.2e-11  Score=94.65  Aligned_cols=74  Identities=30%  Similarity=0.433  Sum_probs=64.9

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.++..    ..|++|..|.++|||+++| |++||+|++|||+.+.+.++++++.+|+..+.  .|.|.|.|.
T Consensus        24 ~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~   96 (114)
T 2edz_A           24 GQNYGFFLRIEKD----TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGN--SVTLLVLDG   96 (114)
T ss_dssp             TCCCSCEEECCTT----CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCS--EEEEEEECH
T ss_pred             CCcccEEEEEecC----CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--EEEEEEEEC
Confidence            4679999987653    3589999999999999988 99999999999999999999999999988754  499999886


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus        97 ~   97 (114)
T 2edz_A           97 D   97 (114)
T ss_dssp             H
T ss_pred             C
Confidence            5

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=100.78  Aligned_cols=87  Identities=26%  Similarity=0.411  Sum_probs=70.6

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCC-------------------------CCCCCCeEEEeecCCChhcccCCCCCC
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLL-------------------------EDGTRGAIIEKVKKGSPADLEGHLLAG  152 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~-------------------------~~g~~gi~Is~V~pGgpA~~~G~L~~G  152 (315)
                      .++|.|..       .||||+|.+....                         .....+++|..|.++++|+++| |++|
T Consensus        11 ~v~l~r~~-------~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~G   82 (126)
T 2yuy_A           11 TVTLKRTS-------QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTG   82 (126)
T ss_dssp             CEEEECCS-------SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSS
T ss_pred             EEEEEECC-------CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCC
Confidence            46777764       6899999863211                         0123579999999999999988 9999


Q ss_pred             CEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         153 DQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       153 D~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+|++|||+++.++++++++++|+..+..  |.|.|.|....
T Consensus        83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~--v~l~v~r~~~~  122 (126)
T 2yuy_A           83 DRIIKVNGESVIGKTYSQVIALIQNSDTT--LELSVMPKDSG  122 (126)
T ss_dssp             CCCCEETTEECSSCCHHHHHHHHHTCTTE--EEEECCCCCCC
T ss_pred             CEEEEECCEECCCCCHHHHHHHHHcCCCE--EEEEEEECCCC
Confidence            99999999999999999999999987544  99999887543

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=6.3e-11  Score=93.38  Aligned_cols=86  Identities=27%  Similarity=0.363  Sum_probs=69.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..++|.+..     ...+|||.|.++.+.   ..|++|..|.++++|+++| |++||+|++|||+.+.++++.+++..
T Consensus         8 ~~~~v~l~~~~-----~~~~lG~~~~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~   78 (101)
T 1uez_A            8 EVRLVSLRRAK-----AHEGLGFSIRGGSEH---GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKA   78 (101)
T ss_dssp             CCEEECCCCCC-----TTTCSSEEEEECTTT---TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHH
T ss_pred             ccEEEEEEECC-----CCCcccEEEeCCCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHh
Confidence            34556666643     247999999998653   3589999999999999988 99999999999999999999887777


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      ++.. .  .|.|.|.|..
T Consensus        79 ~~~~-~--~v~l~v~R~g   93 (101)
T 1uez_A           79 LKGS-K--KLVLSVYSAG   93 (101)
T ss_dssp             SSSS-S--SCCEEECCCC
T ss_pred             hcCC-C--eEEEEEEECC
Confidence            6543 2  3888887764

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.16  E-value=1.7e-10  Score=92.78  Aligned_cols=73  Identities=26%  Similarity=0.429  Sum_probs=64.5

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.++.+.   ..|++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+++.. ..  |.|.|.|.
T Consensus        26 ~~~lG~~l~~~~~~---~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~--v~l~v~r~   98 (114)
T 1x5n_A           26 SRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS--LTISIVAA   98 (114)
T ss_dssp             SCCCCEEEEECCSS---SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS--EEEEECSS
T ss_pred             CCceeEEEeecCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce--EEEEEEcC
Confidence            46899999998653   3589999999999999888 999999999999999999999999999875 34  99999876

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.16  E-value=1.6e-10  Score=94.71  Aligned_cols=83  Identities=31%  Similarity=0.433  Sum_probs=69.6

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.+..       .||||.+.++..    ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+|+
T Consensus        11 r~v~l~~~~-------~g~G~~l~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   78 (128)
T 2kjd_A           11 RLCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR   78 (128)
T ss_dssp             EEEEEECCS-------SSCCEEEEECSS----SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEecCC-------CcccEEEEecCC----CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345666654       689999998764    2489999999999999988 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCC
Q psy4487         177 ESRQEPQVELIVSRRI  192 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~  192 (315)
                      ...+ ..+.|+|.|..
T Consensus        79 ~~~~-~~~~l~v~R~g   93 (128)
T 2kjd_A           79 AGGD-ETKLLVVDRET   93 (128)
T ss_dssp             TTCS-EEEEEEECHHH
T ss_pred             hCCC-CEEEEEEEeCC
Confidence            8744 34778887754

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=9.2e-11  Score=95.90  Aligned_cols=89  Identities=24%  Similarity=0.337  Sum_probs=72.0

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..    ....+|||.|.++...  +..+++|..|.++++|+++| |++||+|++|||+++.+++|+++.++
T Consensus        15 ~~~~v~l~k~~----~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~   87 (114)
T 2d8i_A           15 VTQSIHIEKSD----TAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDF   87 (114)
T ss_dssp             EEEEEEEECSC----TTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHH
T ss_pred             ceEEEEEEeCC----CCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            45677788764    1123799999985432  22589999999999999988 99999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+..    .+.|+|.|....
T Consensus        88 l~~~----~v~l~v~R~p~~  103 (114)
T 2d8i_A           88 LSQP----SLGLLVRTYPEL  103 (114)
T ss_dssp             HTSS----EEEEEEEECCCS
T ss_pred             HhCC----cEEEEEEECCCC
Confidence            9753    399999887644

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.15  E-value=1.5e-10  Score=94.92  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +.++.|.+..      ..||||.+.++.+    ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++.++|
T Consensus         9 ~~~v~l~~~~------~~glG~~~~~~~~----~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l   78 (127)
T 1b8q_A            9 VISVRLFKRK------VGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL   78 (127)
T ss_dssp             SEEEEEECTT------TSCCSCCEEECTT----SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHH
T ss_pred             eEEEEEEeCC------CCcEeEEEEecCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4556776653      3699999998653    36899999999999999984499999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +...+ ..|.|.|.|....
T Consensus        79 ~~~~g-~~v~l~v~R~g~~   96 (127)
T 1b8q_A           79 RGIAS-ETHVVLILRGPEG   96 (127)
T ss_dssp             HSCCS-SCEEEEEECCCCS
T ss_pred             HhCCC-CeEEEEEEeCCce
Confidence            98644 3499999987643

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.14  E-value=2.2e-10  Score=100.43  Aligned_cols=75  Identities=21%  Similarity=0.414  Sum_probs=66.7

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.++.      .|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+++.....  |.|+|.|.
T Consensus       124 ~~~lG~~~~~~~------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~--v~L~V~R~  195 (206)
T 3r0h_A          124 GKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK--VSMEVTRP  195 (206)
T ss_dssp             TCCCCEEEEECS------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE--EEEEEEEE
T ss_pred             CCccCeEEEcCC------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeC
Confidence            468999999653      5899999999999999988999999999999999999999999999987655  99999997


Q ss_pred             CCC
Q psy4487         192 IQP  194 (315)
Q Consensus       192 ~~~  194 (315)
                      ...
T Consensus       196 ~~~  198 (206)
T 3r0h_A          196 KPT  198 (206)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=1.8e-10  Score=93.23  Aligned_cols=81  Identities=30%  Similarity=0.496  Sum_probs=68.2

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.+..       .+|||.+.++.+     .|++|..|.++++|+++| |++||+|++|||+.+.++++.+++..++.
T Consensus        22 ~v~l~~~~-------~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~   88 (117)
T 1uit_A           22 HVKVQKGS-------EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ   88 (117)
T ss_dssp             EEEEECSS-------CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTS
T ss_pred             EEEEEeCC-------CCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            56676653       689999998753     489999999999999988 99999999999999999999998876665


Q ss_pred             cCCCCcEEEEEEeCCC
Q psy4487         178 SRQEPQVELIVSRRIQ  193 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~  193 (315)
                      ....  |.|.|.|...
T Consensus        89 ~g~~--v~l~v~r~~~  102 (117)
T 1uit_A           89 QCDT--ITILAQYNPH  102 (117)
T ss_dssp             CCSE--EEEEECCCSC
T ss_pred             CCCe--EEEEEEECCc
Confidence            5544  9999988653

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.11  E-value=3.8e-10  Score=86.82  Aligned_cols=83  Identities=19%  Similarity=0.340  Sum_probs=65.1

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.+++..    ....+|||.+...      ..|++|..|.++|||+++| |++||+|++|||+.+.+.+++++..+|+.
T Consensus         6 ~~~~~~~~----~~~~~lG~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2eaq_A            6 RISINQTP----GKSLDFGFTIKWD------IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAK   74 (90)
T ss_dssp             EEEEECCT----TCSSCCSEEEEEE------TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred             EEEEEecC----CCCCcccEEEEec------CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            34455543    2235799998742      2489999999999999887 99999999999999988899999999986


Q ss_pred             cCCCCcEEEEEEeC
Q psy4487         178 SRQEPQVELIVSRR  191 (315)
Q Consensus       178 s~~~~~V~LvV~R~  191 (315)
                      ......|.|.|.|.
T Consensus        75 ~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           75 AQETGHLVMDVRRY   88 (90)
T ss_dssp             HHHHTEEEEEEEEE
T ss_pred             cCCCCEEEEEEEeC
Confidence            32113499999885

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=113.95  Aligned_cols=74  Identities=22%  Similarity=0.397  Sum_probs=65.9

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||.++||..     .|+||..|.+||||+++| |++||+|++|||+++.++++++++.+|+.......|.|+|.|..
T Consensus        11 ~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           11 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             SSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999864     589999999999999988 99999999999999999999999999998433234999999864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.08  E-value=7.7e-10  Score=96.89  Aligned_cols=79  Identities=25%  Similarity=0.503  Sum_probs=68.0

Q ss_pred             CCccceEEEcCcCCCC-CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         112 SSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~-g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      ..+|||.+.+|..... ...+++|..|.++|+|+++|+|++||+|++|||+.+.+++++++.++|+....  .|.|.|.|
T Consensus       116 ~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R  193 (200)
T 2qt5_A          116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ--EATLLIEY  193 (200)
T ss_dssp             TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS--EEEEEEEE
T ss_pred             CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEE
Confidence            3689999998864322 24689999999999999988899999999999999999999999999998443  49999988


Q ss_pred             CC
Q psy4487         191 RI  192 (315)
Q Consensus       191 ~~  192 (315)
                      ..
T Consensus       194 ~~  195 (200)
T 2qt5_A          194 DV  195 (200)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.08  E-value=5.5e-10  Score=83.54  Aligned_cols=69  Identities=22%  Similarity=0.475  Sum_probs=60.7

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ...|||.+.+         |++|..|.++|+|+++|.|++||+|++|||+.+.+++++++..+|+....  .+.|.|.|.
T Consensus        12 ~~~~g~~~~~---------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R~   80 (81)
T 2rcz_A           12 NEEYGLRLAS---------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMVVQRD   80 (81)
T ss_dssp             TCCCCEEEEE---------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT--EEEEEEEC-
T ss_pred             CCCCCEEEeC---------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC--eEEEEEEeC
Confidence            4678998872         68999999999999888899999999999999999999999999998765  499999874

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=1.2e-09  Score=89.71  Aligned_cols=75  Identities=31%  Similarity=0.424  Sum_probs=65.0

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||.+.++...   ..|++|..|.++++|+++| |++||+|++|||+.+.+.++.+++..++.. .  .|.|.|.|..
T Consensus        32 ~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~--~v~l~v~R~g  104 (128)
T 1uf1_A           32 RSLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-R--HLILTVKDVG  104 (128)
T ss_dssp             CCCCEEEECCTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-S--EEEEEEECCS
T ss_pred             CccCEEEECcccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-C--eEEEEEEECC
Confidence            5799999997643   2589999999999999988 999999999999999999999999988774 2  4999999876


Q ss_pred             CC
Q psy4487         193 QP  194 (315)
Q Consensus       193 ~~  194 (315)
                      ..
T Consensus       105 ~~  106 (128)
T 1uf1_A          105 RL  106 (128)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=84.29  Aligned_cols=71  Identities=21%  Similarity=0.454  Sum_probs=61.0

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ...|||.+.         .|++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++..+|+....  .+.|.|.|.
T Consensus        14 ~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~r~   82 (92)
T 3cyy_A           14 NEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMVVQRD   82 (92)
T ss_dssp             TSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT--EEEEEEEC-
T ss_pred             CCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--cEEEEEEeC
Confidence            467898876         378999999999999988799999999999999999999999999998765  499999886


Q ss_pred             CC
Q psy4487         192 IQ  193 (315)
Q Consensus       192 ~~  193 (315)
                      ..
T Consensus        83 g~   84 (92)
T 3cyy_A           83 ER   84 (92)
T ss_dssp             --
T ss_pred             Cc
Confidence            53

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.06  E-value=6e-10  Score=108.79  Aligned_cols=74  Identities=22%  Similarity=0.397  Sum_probs=65.1

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+|||++.||.+     .|++|..|.+||||+++| |++||+|++|||+++.++++++++.+|+.......|.|+|.|..
T Consensus        19 ~~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           19 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             SSCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            379999999864     599999999999999998 99999999999999999999999999997322234999999874

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.03  E-value=2.9e-10  Score=92.25  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=63.3

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.|+       .+++|..|.++++|+++| |+.||+|++|||+.+.++++++++++|+...+. .|.|.|.|.
T Consensus        25 ~~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~-~v~l~V~~~   95 (111)
T 1vae_A           25 EGDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE-EVEMKVVSL   95 (111)
T ss_dssp             SSCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS-EECEEEECE
T ss_pred             CCcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc-eEEEEEEec
Confidence            37899999865       368999999999999987 999999999999999999999999999987653 388888776


Q ss_pred             CC
Q psy4487         192 IQ  193 (315)
Q Consensus       192 ~~  193 (315)
                      ..
T Consensus        96 ~~   97 (111)
T 1vae_A           96 LD   97 (111)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.00  E-value=2e-09  Score=86.84  Aligned_cols=79  Identities=22%  Similarity=0.448  Sum_probs=65.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      -+.+.|.+.       ..|+||.+...      ..+++|..|.+||||+++| |++||+|++|||..+...+|+|+..+|
T Consensus        18 ~~~l~l~~~-------~~g~G~~l~~~------~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i   83 (101)
T 3qik_A           18 AKRLLILPQ-------EEDYGFDIEEK------NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESIL   83 (101)
T ss_dssp             EEEEEECCC-------SSSSSEEEEEE------TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHH
T ss_pred             cCeEEEEeC-------CCcccEEEEcc------CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHH
Confidence            345566654       37899999752      2478999999999999988 999999999999999889999999999


Q ss_pred             Hhc---CCCCcEEEEEEe
Q psy4487         176 AES---RQEPQVELIVSR  190 (315)
Q Consensus       176 k~s---~~~~~V~LvV~R  190 (315)
                      +.+   +..  |.|+|+.
T Consensus        84 ~~~~~~g~~--v~LLV~~   99 (101)
T 3qik_A           84 NQSFCSRRP--LRLLVAT   99 (101)
T ss_dssp             HHHHHTTCC--EEEEEEC
T ss_pred             HHhhccCCe--EEEEEec
Confidence            874   544  9998875

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.98  E-value=3.2e-10  Score=110.30  Aligned_cols=91  Identities=25%  Similarity=0.369  Sum_probs=75.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+++.|..      +.+|||.|.|+.. .....+++|..|.+||||+++|+|+.||+|++|||+++.++++++++.+|
T Consensus       205 ~~~V~i~k~~------ge~lG~~i~~~~~-g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l  277 (388)
T 3suz_A          205 CKELQLEKHK------GEILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII  277 (388)
T ss_dssp             CEEEEECCCS------SCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHT
T ss_pred             ceEEEEECCC------CCceeEEEEecCC-CCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence            4577888764      4789999998432 23345799999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+....|.|.|.|...
T Consensus       278 ~~~~~~~~v~l~v~r~~~  295 (388)
T 3suz_A          278 KGLKNQTQVKLNIVSCPP  295 (388)
T ss_dssp             TTCTTCSCEEEEEEECCS
T ss_pred             HhccCCCccccccccccc
Confidence            987554459999988653

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.96  E-value=5.2e-10  Score=101.12  Aligned_cols=83  Identities=31%  Similarity=0.438  Sum_probs=69.7

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.+..       .||||.|.++..    ..|++|..|.+|++|+++| |+.||+|++|||+.+.++++++++.+|
T Consensus        10 ~r~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l   77 (216)
T 2krg_A           10 PRLCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAI   77 (216)
T ss_dssp             CEEEEEECCS-------SSSCEEECCCSS----SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHH
T ss_pred             eEEEEEEeCC-------CCceEEEEecCC----CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3455677654       689999998763    3489999999999999988 999999999999999999999999999


Q ss_pred             HhcCCCCcE-EEEEEeCC
Q psy4487         176 AESRQEPQV-ELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V-~LvV~R~~  192 (315)
                      +..+.  .| .|+|.|..
T Consensus        78 ~~~g~--~v~~l~V~R~g   93 (216)
T 2krg_A           78 RAGGD--ETKLLVVDRET   93 (216)
T ss_dssp             HHHCS--EEEEEECCHHH
T ss_pred             HhcCC--eEEEEEEEECC
Confidence            88743  38 88887654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.95  E-value=2.7e-09  Score=111.22  Aligned_cols=85  Identities=27%  Similarity=0.516  Sum_probs=73.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.+..       .+|||.|.|+.+    ..|++|..|.+||+|+++|.|++||+|++|||+++.++++++++++|
T Consensus       308 ~~~v~l~~~~-------~~lG~~i~~~~~----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l  376 (721)
T 2xkx_A          308 PRRIVIHRGS-------TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL  376 (721)
T ss_pred             eEEEEEEECC-------CCccEEEeccCC----CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHH
Confidence            4456676653       589999998864    25899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCC
Q psy4487         176 AESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~  193 (315)
                      +..+..  |.|+|.|...
T Consensus       377 ~~~~~~--v~L~v~r~~~  392 (721)
T 2xkx_A          377 KNAGQT--VTIIAQYKPE  392 (721)
T ss_pred             HhcCCe--EEEEEEeCch
Confidence            988755  9999988754

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=3.8e-09  Score=86.52  Aligned_cols=91  Identities=19%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.+.+..     ...+|||.+.+..... ...|++|..|.++++|+++|+|++||+|++|||+.+.  +++++..+
T Consensus        19 ~~~~~~~~~~~-----~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~   90 (124)
T 1wh1_A           19 ELEEVDLYRMN-----SQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVAL   90 (124)
T ss_dssp             EECCBCCCCSS-----TTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHH
T ss_pred             eEEEEEEEecC-----CCCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHH
Confidence            34445554432     2358999999865432 2368999999999999998879999999999999996  69999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+...+ ..|.|.|.|....
T Consensus        91 l~~~~g-~~v~l~v~R~g~~  109 (124)
T 1wh1_A           91 LTSEEN-KNFSLLIARPELQ  109 (124)
T ss_dssp             HTCSSC-CSCCEEEEECSSC
T ss_pred             HHhCCC-CEEEEEEEECCEE
Confidence            988543 3499999987644

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.89  E-value=8.6e-09  Score=84.47  Aligned_cols=63  Identities=25%  Similarity=0.496  Sum_probs=56.0

Q ss_pred             CCCeEEEeecC--CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         129 TRGAIIEKVKK--GSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       129 ~~gi~Is~V~p--GgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ..|++|..|.+  +++|+++| |++||+|++|||+.+.+.+++++..+|+..+.  .|.|.|.|....
T Consensus        43 ~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~--~v~l~v~R~g~~  107 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQ--TLQLLIEHDPVP  107 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSS--CEEEEEEECSSC
T ss_pred             CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCC--EEEEEEEECCEE
Confidence            36899999999  99999887 99999999999999999999999999998733  499999987644

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.87  E-value=1.1e-08  Score=87.25  Aligned_cols=82  Identities=27%  Similarity=0.454  Sum_probs=67.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..      ..+|||.+.+..      .|++|..|.++|||+++| |+.||+|++|||+.+.+.+++.+..++
T Consensus         5 ~r~v~l~k~~------~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~   71 (166)
T 1w9e_A            5 PREVILCKDQ------DGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVL   71 (166)
T ss_dssp             CEEEEEECCT------TSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCC------CCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4566777754      368999998732      589999999999999987 999999999999999999887888888


Q ss_pred             HhcCCCCcEEEEEEeC
Q psy4487         176 AESRQEPQVELIVSRR  191 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~  191 (315)
                      +...+. .|.|.|+|.
T Consensus        72 ~~~~~~-~v~l~vr~~   86 (166)
T 1w9e_A           72 KQAFGE-KITMTIRDR   86 (166)
T ss_dssp             HHCCSS-EEEEEEECC
T ss_pred             hcCCCC-EEEEEEEcC
Confidence            876653 499999554

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.87  E-value=1.1e-08  Score=89.46  Aligned_cols=78  Identities=24%  Similarity=0.340  Sum_probs=67.1

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||.+.++.... ...|++|..|.++|+|+++|+|++||+|++|||+.+.+++++++.++|++....  |.|.|.|.
T Consensus       118 ~~~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~--v~l~v~R~  194 (196)
T 1p1d_A          118 SVELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL--VKLKIRKD  194 (196)
T ss_dssp             SCCCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC--EEEEEECC
T ss_pred             CCCcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE--EEEEEEeC
Confidence            467999998865432 246899999999999999888999999999999999999999999999988444  99999886


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus       195 ~  195 (196)
T 1p1d_A          195 E  195 (196)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=98.51  E-value=1.5e-07  Score=78.27  Aligned_cols=51  Identities=35%  Similarity=0.468  Sum_probs=46.1

Q ss_pred             cCcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487         245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD  314 (315)
Q Consensus       245 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd  314 (315)
                      +..+.|+|++++.|++.                   ...|.|+|++|++|++++ .++.+||||+++|+|+
T Consensus         5 ~~~~~G~l~~sl~y~~~-------------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~   56 (148)
T 3fdw_A            5 NIFVTGRIAFSLKYEQQ-------------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPD   56 (148)
T ss_dssp             -CCCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETC
T ss_pred             CCccceEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcC
Confidence            45678999999999998                   889999999999999998 5789999999999986

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.51  E-value=1.6e-07  Score=76.78  Aligned_cols=49  Identities=45%  Similarity=0.880  Sum_probs=45.5

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+|+|.|++.                   ..+|.|+|++|++|++++..+.+||||+++|+|+
T Consensus         5 ~~~G~i~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~   53 (141)
T 1v27_A            5 SSGGQLSIKLWFDKV-------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD   53 (141)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSC
T ss_pred             CcccEEEEEEEEeCC-------------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecC
Confidence            456999999999988                   8899999999999999999999999999999886

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.51  E-value=1.7e-07  Score=75.66  Aligned_cols=48  Identities=42%  Similarity=0.860  Sum_probs=45.0

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +.|+|++++.|++.                   ...|.|+|++|++|++++..+.+||||+++++|+
T Consensus         3 ~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~   50 (129)
T 2bwq_A            3 LSGQLSIKLWFDKV-------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD   50 (129)
T ss_dssp             CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred             eeEEEEEEEEEccC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence            46999999999998                   8899999999999999999999999999999886

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=98.51  E-value=1.1e-07  Score=79.34  Aligned_cols=49  Identities=27%  Similarity=0.271  Sum_probs=38.8

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|++.                   ...|.|+|++|++|++++..+.+||||+++|+++
T Consensus        14 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~   62 (153)
T 1w15_A           14 SGRGELLVSLCYQST-------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHA   62 (153)
T ss_dssp             --CCEEEEEEEEETT-------------------TTEEEEEEEEEESCC------CCCEEEEEEEEET
T ss_pred             ccccEEEEEEEEcCC-------------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeC
Confidence            456999999999988                   8899999999999999998889999999999876

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=98.48  E-value=1.2e-07  Score=80.63  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=44.5

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      ...|+|+++|.|+..                   ...|.|+|++|++|++++.++.+|||||++|+|
T Consensus        27 ~~~G~l~~sl~y~~~-------------------~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~   74 (155)
T 2z0u_A           27 VGATRIQIALKYDEK-------------------NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP   74 (155)
T ss_dssp             -CCEEEEEEEEEETT-------------------TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEES
T ss_pred             CCcEEEEEEEEEcCC-------------------CCEEEEEEEEccCcCCcccCCCCCEEEEEEEec
Confidence            345999999999988                   889999999999999999999999999999998

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=98.47  E-value=1.8e-07  Score=78.41  Aligned_cols=48  Identities=25%  Similarity=0.454  Sum_probs=43.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+|+|.|++.                   ...|.|+|++|++|++++ .+.+|||||++|+|+
T Consensus        11 ~~~G~~~lsL~y~~~-------------------~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~   58 (153)
T 3fbk_A           11 KVQGAGQLRLSIDAQ-------------------DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPE   58 (153)
T ss_dssp             --CCCCEEEEEEEES-------------------SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESC
T ss_pred             CCCCEEEEEEEEECC-------------------CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcC
Confidence            445999999999999                   889999999999999999 588999999999986

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.45  E-value=7.2e-07  Score=70.27  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||+ .| |++||+|++|||+.+.  +++++..+|........|.|.|.|...
T Consensus         6 ~~Gv~V~~V~~~spA~-~G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~   66 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAA-DV-LHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDK   66 (100)
T ss_dssp             CCCEEEEEECTTSGGG-GT-CCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCchH-HC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            3589999999999999 45 9999999999999995  788999999875433459999998653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=3.8e-07  Score=75.06  Aligned_cols=48  Identities=33%  Similarity=0.524  Sum_probs=44.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|++.                   ...|.|+|++|++|++++..+ +||||+++|+|+
T Consensus         8 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~   55 (142)
T 2dmg_A            8 SPLGQIQLTIRHSSQ-------------------RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPD   55 (142)
T ss_dssp             CSSCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESC
T ss_pred             CCcceEEEEEEEeCC-------------------CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcC
Confidence            446999999999988                   889999999999999999888 999999999985

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.44  E-value=5.3e-07  Score=70.47  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=50.7

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++|||+. | |++||+|++|||+.+.  +++++..+|+.......|.|.|.|+.
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g   63 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDR   63 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETT
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            5899999999999997 6 9999999999999996  67899999988632234999999865

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.43  E-value=1.3e-07  Score=73.85  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=50.0

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      |++|..|.++|||++ | |++||+|++|||+.+.  +++++..+|+.......|.|.|.|+.
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g   59 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREE   59 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSS
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            688999999999998 7 9999999999999996  67899999987633345999999865

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.42  E-value=6.4e-07  Score=70.19  Aligned_cols=60  Identities=10%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..+|..|.++|+|+++| |+.||+|++|||+.+.  +++++...|........|.|.|.|...
T Consensus         3 ~p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            3 RPVVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CCBEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CCEEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            35799999999999877 9999999999999995  789999999876543459999999864

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=5.3e-07  Score=74.23  Aligned_cols=49  Identities=35%  Similarity=0.442  Sum_probs=45.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|...                   ...|.|+|++|++|++++..+.+||||+++++|+
T Consensus        10 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~   58 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQ-------------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD   58 (141)
T ss_dssp             CCCCEEEEEEEECSS-------------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESC
T ss_pred             ceeeEEEEEEEEeCC-------------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECC
Confidence            346999999999988                   8899999999999999998899999999999986

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=98.39  E-value=4.8e-07  Score=74.41  Aligned_cols=50  Identities=26%  Similarity=0.421  Sum_probs=44.8

Q ss_pred             CcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         246 SSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       246 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ....|+|++++.|++.                   ...|.|+|++|++|++++..+.+||||+++|.++
T Consensus        12 ~~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~   61 (142)
T 2chd_A           12 ATTLGALEFSLLYDQD-------------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPG   61 (142)
T ss_dssp             --CCCEEEEEEEEEGG-------------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESC
T ss_pred             CCccceEEEEEEEeCC-------------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcC
Confidence            3557999999999988                   8899999999999999999999999999999874

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=98.38  E-value=3.9e-07  Score=74.05  Aligned_cols=47  Identities=19%  Similarity=0.405  Sum_probs=44.0

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+++|.|++.                   ..+|.|+|++|++|++++.++.+||||+++|.++
T Consensus         2 ~G~l~~sl~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~   48 (138)
T 3n5a_A            2 RGELLLSLCYNPS-------------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK   48 (138)
T ss_dssp             CCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEET
T ss_pred             CcEEEEEEEEcCC-------------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeC
Confidence            4999999999988                   8899999999999999999999999999999864

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.37  E-value=1.2e-06  Score=69.98  Aligned_cols=58  Identities=26%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++|+|+++| |++||.|++|||+.+.  +++++..+|+. ...  +.|.|.|+.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~--v~l~v~R~g   91 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQ--LAVQIRRGR   91 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSS--EEEEEEETT
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCe--EEEEEEECC
Confidence            4689999999999999988 9999999999999996  68899999987 333  999998865

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.37  E-value=6e-07  Score=75.04  Aligned_cols=49  Identities=33%  Similarity=0.485  Sum_probs=45.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+++|.|+..                   ...|.|+|++|++|++++..+.+||||+++|+|+
T Consensus        26 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~   74 (152)
T 1rsy_A           26 EKLGKLQYSLDYDFQ-------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD   74 (152)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT
T ss_pred             CCceEEEEEEEEeCC-------------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcC
Confidence            345999999999988                   8899999999999999998999999999999986

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.36  E-value=8.4e-07  Score=72.81  Aligned_cols=47  Identities=38%  Similarity=0.736  Sum_probs=43.0

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+++|.|+.+                     .|.|+|++|++|++++..+.+||||+++|.++
T Consensus         4 ~~~G~i~~~l~y~~~---------------------~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~   50 (142)
T 1rh8_A            4 PITGEIQLQINYDLG---------------------NLIIHILQARNLVPRDNNGYSDPFVKVYLLPG   50 (142)
T ss_dssp             CCCCEEEEEEEEETT---------------------EEEEEEEEEESCCCCSSSSCSCCEEEEEETTS
T ss_pred             CcceEEEEEEEEcCC---------------------EEEEEEEEecCCCCCCCCCCCCceEEEEEecC
Confidence            456999999999866                     89999999999999999999999999999874

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.36  E-value=5.4e-07  Score=73.87  Aligned_cols=49  Identities=22%  Similarity=0.274  Sum_probs=44.6

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|++.                   ...|.|+|++|++|++++. ++.+||||+++|+|+
T Consensus         6 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~   55 (138)
T 1ugk_A            6 SGLGTLFFSLEYNFE-------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE   55 (138)
T ss_dssp             CCCCEEEEEEEEEGG-------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT
T ss_pred             CccEEEEEEEEEECC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC
Confidence            446999999999988                   8899999999999999998 489999999999985

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.35  E-value=5.1e-08  Score=94.76  Aligned_cols=67  Identities=25%  Similarity=0.419  Sum_probs=0.0

Q ss_pred             CCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       111 ~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      ...+|||.+.||          +|..|.+||+|+++| |++||+|++|||+++.+.+|++++++|++++..  |.|.|..
T Consensus       306 ~~~~lG~~i~~g----------~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~--v~L~V~p  372 (388)
T 3suz_A          306 LKYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE--IHMKTMP  372 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccceEEecC----------EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEe
Confidence            346799988764          799999999999988 999999999999999999999999999998766  7777643

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.34  E-value=1.8e-06  Score=71.66  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++|||+ +| |+.||.|++|||+.+.  +++++..+|........|+|.|.|+.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g  115 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNG  115 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETT
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            4689999999999999 77 9999999999999995  67889999987632235999998864

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=1.3e-06  Score=72.39  Aligned_cols=49  Identities=33%  Similarity=0.377  Sum_probs=42.9

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCC-CCC------CCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPR-SNG------QPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~-~~~------~~~~pyvk~~llpd  314 (315)
                      ...|+|+|+|.|++.                   ..+|.|+|++|++|+++ +.+      +.+|||||++|+|+
T Consensus        10 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~   65 (147)
T 2enp_A           10 YQLGMLHFSTQYDLL-------------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD   65 (147)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETC
T ss_pred             CcceEEEEEEEEcCC-------------------CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeC
Confidence            456999999999998                   88999999999999995 433      57999999999986

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=98.33  E-value=5.4e-07  Score=74.22  Aligned_cols=49  Identities=33%  Similarity=0.485  Sum_probs=45.3

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|+..                   ..+|.|+|++|++|++++..+.+||||+++|+|+
T Consensus        18 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~   66 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQ-------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD   66 (143)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESC
T ss_pred             cCeEEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECC
Confidence            345999999999988                   8899999999999999998889999999999986

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.31  E-value=9.5e-07  Score=67.74  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|+.|..+.|+++|+++| |++||.|++|||+.+.  +++++.+++........+.|.|.|+.
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            478899999999999877 9999999999999995  78888888876543345999998864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=98.30  E-value=9.3e-07  Score=74.30  Aligned_cols=49  Identities=24%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+++|.|++.                   ...|.|+|++|++|++++.++.+||||+++|.++
T Consensus         9 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~   57 (159)
T 1tjx_A            9 EKLGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN   57 (159)
T ss_dssp             GCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET
T ss_pred             CcCCeEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC
Confidence            456999999999988                   8899999999999999999999999999999864

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.30  E-value=1.3e-06  Score=66.82  Aligned_cols=58  Identities=21%  Similarity=0.432  Sum_probs=49.4

Q ss_pred             CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      +++|..|.++++|+++| |+.||+|++|||+.+.  +++++...|....+ ..+.|.|.|+.
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g-~~v~l~v~R~g   62 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPG-XSLALEIERQG   62 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHHCTT-CCEEEEEEETT
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhcCCC-CeEEEEEEECC
Confidence            46799999999999877 9999999999999996  78999999987643 24999998865

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=98.27  E-value=1.5e-06  Score=73.71  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=45.4

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+++|.|.+.                   ...|.|+|++|++|++++..+.+||||+++|.++
T Consensus        21 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~   69 (166)
T 2cm5_A           21 EERGKILVSLMYSTQ-------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD   69 (166)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC
T ss_pred             CccceEEEEEEEECC-------------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECC
Confidence            556999999999988                   8899999999999999999999999999999874

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.23  E-value=3.2e-06  Score=81.69  Aligned_cols=76  Identities=22%  Similarity=0.440  Sum_probs=62.3

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|+|+.+..-.   ....+++|..|.++|||+++| |++||+|++|||+.+.+++.+++..+|+...+ ..|.|.|.|..
T Consensus        85 ~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g-~~v~l~v~r~g  159 (388)
T 1fc6_A           85 TGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD-SQVEVVLHAPG  159 (388)
T ss_dssp             BBCSEEEEECT---TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTT-CEEEEEEEETT
T ss_pred             EEEEEEEEEee---cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-CEEEEEEEeCC
Confidence            58999986421   112579999999999999887 99999999999999999999999999976544 35999998865


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus       160 ~  160 (388)
T 1fc6_A          160 A  160 (388)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.23  E-value=3.4e-06  Score=67.31  Aligned_cols=58  Identities=22%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++++|+++| |++||.|++|||+.+.  ++.++..+|+. +..  +.|.|.|+.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-g~~--v~l~v~R~g   91 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVLT-ESP--LLLEVRRGN   91 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSS--EEEEEEETT
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCe--EEEEEEECC
Confidence            4689999999999999887 9999999999999996  67888888853 433  999998865

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.22  E-value=2.4e-06  Score=70.98  Aligned_cols=47  Identities=34%  Similarity=0.503  Sum_probs=42.4

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|...                     .|.|+|++|++|++++..+.+||||+++|.++
T Consensus        17 ~~~G~l~~~l~~~~~---------------------~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~   63 (149)
T 1a25_A           17 ERRGRIYIQAHIDRE---------------------VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD   63 (149)
T ss_dssp             CTTCEEEEEEEESSS---------------------EEEEEEEEEESCCCCSTTSCCCEEEEEEEESC
T ss_pred             CcceEEEEEEEecCC---------------------EEEEEEEEeeCCCCCCCCCCcCeEEEEEEECC
Confidence            446999999999655                     89999999999999999999999999999874

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=98.17  E-value=2e-06  Score=70.71  Aligned_cols=33  Identities=39%  Similarity=0.664  Sum_probs=29.9

Q ss_pred             cceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..+|.|+|++|++|++ +.++.+|||||++|+|+
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~   51 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPD   51 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESC
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcC
Confidence            4599999999999997 67888999999999986

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.16  E-value=1.3e-05  Score=78.89  Aligned_cols=75  Identities=27%  Similarity=0.345  Sum_probs=59.6

Q ss_pred             ccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         114 TLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       114 gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+|+...+-....  ....|++|..|.++|+|+++| |++||+|++|||+.+.  +++++.++|+.....  |.|.|.|.
T Consensus       345 ~~gl~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~--v~l~v~R~  419 (436)
T 4a8c_A          345 TPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAI--IALQIVRG  419 (436)
T ss_pred             ccCceeeecccccccCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCe--EEEEEEEC
Confidence            3566554432211  223589999999999999888 9999999999999995  789999999986654  99999997


Q ss_pred             CC
Q psy4487         192 IQ  193 (315)
Q Consensus       192 ~~  193 (315)
                      ..
T Consensus       420 g~  421 (436)
T 4a8c_A          420 NE  421 (436)
T ss_pred             CE
Confidence            63

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.13  E-value=3.9e-06  Score=69.16  Aligned_cols=46  Identities=13%  Similarity=0.052  Sum_probs=41.0

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|+++|.|+..                   ..+|.|+|++|+   +++.++.+|||||++|+|+
T Consensus        10 ~~~G~l~~sl~y~~~-------------------~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~   55 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQ-------------------KAELFVTRLEAV---TSNHDGGCDCYVQGSVANR   55 (138)
T ss_dssp             SSCCEEEEEEEEETT-------------------TTEEEEEEEEEE---CCCCSSCCCEEEEEEEEET
T ss_pred             CcceEEEEEEEEeCC-------------------CCEEEEEEEEEE---cCCCCCCcceEEEEEEEcC
Confidence            345999999999988                   889999999999   4677889999999999984

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.11  E-value=4.2e-06  Score=74.24  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCC-CEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAG-DQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~G-D~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      |+|++...+..   +..|++|..|.++|||+++| |+.| |+|++|||+.+.+..... ..+++...+ ..|.|.|.|..
T Consensus         3 g~~~~~~~~~~---~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~-~~~~~~~~g-~~v~l~v~R~~   76 (209)
T 3rle_A            3 GSSQSVEIPGG---GTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTL-KDLLKANVE-KPVKMLIYSSK   76 (209)
T ss_dssp             -----CCCTTS---SSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHH-HHHHHHTTT-SCEEEEEEETT
T ss_pred             chhhhhhccCC---CCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHH-HHHHhcCCC-CEEEEEEEecC
Confidence            45555543322   34689999999999999887 9999 999999999997554322 233444333 34999998864

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.08  E-value=4.8e-06  Score=66.07  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..+.|+++|++.| |++||.|++|||+.+.  ++.++..++........+.|.|.|+.
T Consensus        37 ~G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEEECSCTHHHHHHT-CCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEEecCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            367788888888889887 9999999999999996  56677777776443345999998864

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.06  E-value=1.2e-05  Score=66.42  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++++|+++  |+.||+|++|||+.+.  +++++..+++.......|.|.| |+.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g   82 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQG   82 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECC
Confidence            58999999999999975  9999999999999995  7889998887543333589998 754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.06  E-value=2.1e-05  Score=66.80  Aligned_cols=65  Identities=26%  Similarity=0.404  Sum_probs=55.4

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS  189 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~  189 (315)
                      ...|||.+..         + +|..|.++++|+++| |+.||+|++|||+++.+..+.++.-.++..+..  +.+.|.
T Consensus        99 ~~~lG~~~~~---------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~--~~l~v~  163 (166)
T 1w9e_A           99 TGHVGFIFKN---------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV--VTITIM  163 (166)
T ss_dssp             TSCCSEEEET---------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE--EEEEEE
T ss_pred             CCcEeEEEeC---------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCE--EEEEEE
Confidence            3678998872         3 799999999999887 999999999999999999999998888887654  666654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.04  E-value=2e-05  Score=74.04  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      ..|++|..|.+++||+++| |+.||+|++|||+.+.  ++.++..+|........|.|.|.|
T Consensus       241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R  299 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQD  299 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEE
Confidence            4689999999999999877 9999999999999996  778899888764333459999988

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.01  E-value=1.3e-05  Score=75.17  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.+++||+++| |++||+|++|||+.+.  ++.++..+|+.......|.|.|.|+..
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3689999999999999877 9999999999999995  678999999874333459999998753

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.00  E-value=1.2e-05  Score=76.94  Aligned_cols=62  Identities=31%  Similarity=0.480  Sum_probs=53.9

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||+++| |++||.|++|||+.+.  ++.++..+|.......+|.|.|.|+..
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3689999999999999888 9999999999999996  889999999875443469999999753

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.99  E-value=7.4e-06  Score=72.66  Aligned_cols=77  Identities=21%  Similarity=0.213  Sum_probs=58.8

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLA-GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~-GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R  190 (315)
                      ...||+.+.--........|++|..|.++|||+++| |++ ||.|++|||. +  .+++++.++|+...+ ..|.|.|.|
T Consensus        94 ~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v--~~~~~l~~~l~~~~g-~~v~l~v~r  168 (209)
T 3rle_A           94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-M--NESEDLFSLIETHEA-KPLKLYVYN  168 (209)
T ss_dssp             SSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-C--CSSSCHHHHHHHTTT-SCEEEEEEE
T ss_pred             cCccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-e--CCHHHHHHHHHhCCC-CeEEEEEEE
Confidence            457898886422211122689999999999999988 999 9999999997 5  467888888888643 349999988


Q ss_pred             CCC
Q psy4487         191 RIQ  193 (315)
Q Consensus       191 ~~~  193 (315)
                      ...
T Consensus       169 ~~~  171 (209)
T 3rle_A          169 TDT  171 (209)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=97.95  E-value=8.7e-06  Score=69.62  Aligned_cols=47  Identities=30%  Similarity=0.437  Sum_probs=39.6

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd  314 (315)
                      ...|+|++++.|..                     ..|.|+|++|++|++++. ++.+|||||++|.++
T Consensus        16 ~~~G~l~~~l~y~~---------------------~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~   63 (171)
T 2q3x_A           16 PAMGDIQIGMEDKK---------------------GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLEN   63 (171)
T ss_dssp             -CCCEEEEEEEEET---------------------TEEEEEEEEEESCCCCC---CCCEEEEEEEEEET
T ss_pred             CCccEEEEEEEECC---------------------CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECC
Confidence            34599999999954                     499999999999999985 789999999999875

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.89  E-value=1.8e-05  Score=81.05  Aligned_cols=71  Identities=24%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+||+.+....      .|++|..|.++|||+++| |++||+|++|||+.+.   .+++.++|+..+....|+|.|.|+.
T Consensus       485 ~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g  554 (597)
T 4fgm_A          485 VNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRD  554 (597)
T ss_dssp             CCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETT
T ss_pred             cccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            58999886421      379999999999999988 9999999999999994   3556666765433345999999975


Q ss_pred             C
Q psy4487         193 Q  193 (315)
Q Consensus       193 ~  193 (315)
                      .
T Consensus       555 ~  555 (597)
T 4fgm_A          555 E  555 (597)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.88  E-value=2e-05  Score=75.09  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=52.2

Q ss_pred             CCeEEEeecCCChhcccCCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLA-----------GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~-----------GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++|||+++| |+.           ||+|++|||+.+.  +++++..+|.......+|+|.|.|+..
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~  322 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDH  322 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSS
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCE
Confidence            699999999999999988 998           9999999999996  668999999765433459999998753

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.84  E-value=3.4e-05  Score=76.30  Aligned_cols=61  Identities=33%  Similarity=0.513  Sum_probs=53.4

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++.++..+|........|.|.|.|+..
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~  342 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNK  342 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            689999999999999988 9999999999999995  778999999875444569999999764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.84  E-value=3.6e-05  Score=75.68  Aligned_cols=62  Identities=31%  Similarity=0.480  Sum_probs=52.5

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||+++| |+.||+|++|||+.+.  +++++..+|........|.|.|.|+..
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (436)
T ss_pred             CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3689999999999999888 9999999999999996  678888888765433459999998753

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.83  E-value=3.9e-05  Score=72.36  Aligned_cols=58  Identities=28%  Similarity=0.459  Sum_probs=51.1

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ..|++|..|.++|||+++| |+.||.|++|||+.+.  +++++.++|+. ..  .|.|.|.|+.
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~-~~--~v~l~v~R~g  312 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QS--QLAVQIRRGR  312 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT-CS--SEEEEEEETT
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC-CC--eEEEEEEECC
Confidence            4689999999999999988 9999999999999995  78899998876 33  4999999975

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.81  E-value=1.2e-05  Score=78.72  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..|+||.+...... .....++|..|.++|||+++| |+.||+|++|||+.+.+..   +..+|+. .+ ..|.|.|.|.
T Consensus        73 ~~G~~~~l~~~~~~-~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g-~~v~l~v~R~  145 (403)
T 3k50_A           73 SYGFDYTLYKVLDN-DTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-ST-RQLQIGVYKE  145 (403)
T ss_dssp             BCSEEEEEEECTTC-SSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SC-EEEEEEEEEE
T ss_pred             ccceEEEEEEcCCC-CcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CC-CEEEEEEEeC
Confidence            57888888753321 111248999999999999988 9999999999999998774   5566666 33 3599999887


Q ss_pred             CC
Q psy4487         192 IQ  193 (315)
Q Consensus       192 ~~  193 (315)
                      ..
T Consensus       146 g~  147 (403)
T 3k50_A          146 VV  147 (403)
T ss_dssp             EC
T ss_pred             Cc
Confidence            53

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.79  E-value=2.8e-05  Score=76.89  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.++|+|+++| |++||.|++|||+.+.  +++++.++|+..+..  |.|.|.|..
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~--v~l~v~R~g  443 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEKKKE--LLVQVLRGP  443 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSSCSC--EEEEEEETT
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcCCCe--EEEEEEECC
Confidence            589999999999999988 9999999999999995  779999999885544  999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=97.64  E-value=6.2e-05  Score=69.43  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..|.|++.+.|.+.                   ...|.|+|++|++|++++..+.+|||||++|++|
T Consensus       137 ~~G~i~vsl~y~~~-------------------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~  184 (296)
T 1dqv_A          137 DLGELNFSLCYLPT-------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE  184 (296)
T ss_dssp             CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTT
T ss_pred             ccceEEEEEEeccc-------------------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeC
Confidence            35999999999887                   7899999999999999999899999999999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=97.54  E-value=0.00011  Score=66.75  Aligned_cols=48  Identities=25%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..|.|.+.+.|.+.                   ...|.|+|++|++|++++.++.+|||||++|+++
T Consensus       135 ~~G~i~l~l~~~p~-------------------~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~  182 (284)
T 2r83_A          135 KLGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN  182 (284)
T ss_dssp             CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET
T ss_pred             ccccEEEEEEecCc-------------------CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeC
Confidence            35899999999877                   7799999999999999999999999999999864

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.40  E-value=2.3e-05  Score=74.04  Aligned_cols=59  Identities=34%  Similarity=0.509  Sum_probs=0.0

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||+++| |+.||+|++|||+.+.  +++++..+|+. +.  .|+|.|.|+..
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~--~v~l~v~R~g~  311 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKR-ES--TLNMVVRRGNE  311 (332)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CC--eEEEEEEECCE
Confidence            3589999999999999877 9999999999999995  67888888875 33  38999988653

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.28  E-value=9.1e-05  Score=73.19  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=50.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++++|+++| |+.||+|++|||+.+.  ++.++..+|.......+|.|.|.|+..
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999876 9999999999999996  457888888753222349999988753

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.24  E-value=4.5e-05  Score=75.36  Aligned_cols=60  Identities=23%  Similarity=0.464  Sum_probs=0.0

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++++|++.| |+.||+|++|||+.+.  +++++.++|+.....  |.|.|.|...
T Consensus       382 ~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~--v~l~v~R~g~  441 (448)
T 1ky9_A          382 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSV--LALNIQRGDS  441 (448)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCe--EEEEEEECCE
Confidence            3589999999999999887 9999999999999996  788999999876654  8899988753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.16  E-value=0.00073  Score=71.70  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=57.0

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCc
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKG--------SPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQ  183 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pG--------gpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~  183 (315)
                      .|+|+.+.-  .    ..+++|..|.+|        +||+++| .|+ ||+|++|||+.+.++.  +++.+|+...+ .+
T Consensus       737 ~g~G~~~~~--~----~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g-~~  806 (1045)
T 1k32_A          737 GRIACDFKL--D----GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAG-TS  806 (1045)
T ss_dssp             CBCSEEEEE--E----TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTT-SE
T ss_pred             ceecEEEEE--e----CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCC-CE
Confidence            588888753  1    247999999998        9999887 399 9999999999998775  78888887655 35


Q ss_pred             EEEEEEeCC
Q psy4487         184 VELIVSRRI  192 (315)
Q Consensus       184 V~LvV~R~~  192 (315)
                      |.|.|.|..
T Consensus       807 v~l~v~r~~  815 (1045)
T 1k32_A          807 ARIRLSGKG  815 (1045)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            999999865

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=97.03  E-value=0.00061  Score=55.08  Aligned_cols=39  Identities=18%  Similarity=0.011  Sum_probs=34.3

Q ss_pred             eeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         275 FYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       275 ~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      ++|..+...|.|+|++|++|++++..+.+||||++++.+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~   44 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN   44 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC
Confidence            345556889999999999999999889999999999865

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=96.79  E-value=0.00065  Score=58.05  Aligned_cols=32  Identities=25%  Similarity=0.124  Sum_probs=27.3

Q ss_pred             cceEEEEEEeecCCCCCCC----------CCCCCCeEEEeec
Q psy4487         281 TLRLVVTLMCAASLVPRSN----------GQPRCPYAKIYLL  312 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~----------~~~~~pyvk~~ll  312 (315)
                      ...|.|+|++|++|++++.          .+.+||||+++|-
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~   69 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD   69 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC
Confidence            4579999999999999872          3679999999984

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=96.76  E-value=0.0019  Score=66.43  Aligned_cols=47  Identities=34%  Similarity=0.503  Sum_probs=42.2

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ...|+|.+++.|+..                     .|.|+|++|++|++++..+.+|||||++|+|+
T Consensus       158 ~~~g~i~~~~~~~~~---------------------~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~  204 (674)
T 3pfq_A          158 ERRGRIYIQAHIDRE---------------------VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD  204 (674)
T ss_dssp             CCSCEEEEEEEECSS---------------------EEEEEEEEEESCCCCSTTSSCCEEEEEEEESC
T ss_pred             cccccccccceeccc---------------------eeeeeeecccccCCCCcccccCcccccccccC
Confidence            346888888888766                     89999999999999999999999999999986

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=96.63  E-value=0.0013  Score=54.21  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=25.2

Q ss_pred             CCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         279 SGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       279 ~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      .....|.|+|++|++|++++..+.+||||++++.+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~   51 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYD   51 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC
Confidence            34678999999999999999888999999999985

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=96.56  E-value=0.002  Score=52.88  Aligned_cols=31  Identities=19%  Similarity=0.521  Sum_probs=29.1

Q ss_pred             cceEEEEEEeecCCCCCCCCCCCCCeEEEee
Q psy4487         281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYL  311 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~l  311 (315)
                      ..+|.|+|++|++|++++..+.+||||++++
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~   46 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV   46 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE
Confidence            5689999999999999999999999999987

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.30  E-value=0.0044  Score=62.88  Aligned_cols=63  Identities=16%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC--------HHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS--------FQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t--------~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||++ + |+.||.|++|||+.+....        ..+...+|....-..+|+|.|.|+..
T Consensus       276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk  346 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGE  346 (539)
T ss_dssp             SBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTE
T ss_pred             cCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            36999999999999985 5 9999999999999996421        11234455554444469999999764

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=95.48  E-value=0.022  Score=57.71  Aligned_cols=57  Identities=16%  Similarity=0.245  Sum_probs=48.6

Q ss_pred             CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487         128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV  188 (315)
Q Consensus       128 g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV  188 (315)
                      +..+++|+.|.++++|+..| ++.||.|++|||+.+.  +.++..++|+++++. -+.|.+
T Consensus       413 ~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~-~l~~~~  469 (539)
T 4fln_A          413 GEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDK-YLVFEF  469 (539)
T ss_dssp             TCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCSS-EEEEEE
T ss_pred             CceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCCC-eEEEEE
Confidence            45689999999999999876 9999999999999995  889999999999875 244443

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=95.31  E-value=0.012  Score=50.41  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=25.5

Q ss_pred             CcceEEEEEEeecCCC-CCCCCCCCCCeEEEeec
Q psy4487         280 GTLRLVVTLMCAASLV-PRSNGQPRCPYAKIYLL  312 (315)
Q Consensus       280 ~~~~L~v~i~~a~~l~-~~~~~~~~~pyvk~~ll  312 (315)
                      ...+|.|+|++|++|+ ..+.++ +||||++++.
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~-sDPYv~v~~~   66 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFG-PSPYVEVTVD   66 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCC-CCEEEEEEET
T ss_pred             CceEEEEEEEEeECCCCcccCCC-CCeEEEEEEC
Confidence            3667999999999999 555554 9999999985

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=94.00  E-value=0.04  Score=53.88  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             cCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487         278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP  313 (315)
Q Consensus       278 ~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp  313 (315)
                      ..+...|.|+|++|++|++++..+.+||||++++.+
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~  418 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS  418 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC
Confidence            345668999999999999999999999999999853

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=93.36  E-value=0.06  Score=54.49  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487         281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL  312 (315)
Q Consensus       281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll  312 (315)
                      -..|.|+|++|++|+. |..+.+|||||++|.
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~  423 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG  423 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEET
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC
Confidence            4579999999999998 888899999999984

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=90.55  E-value=0.22  Score=51.13  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=29.7

Q ss_pred             CcceEEEEEEeecCCCCCCC--CCCCCCeEEEeecC
Q psy4487         280 GTLRLVVTLMCAASLVPRSN--GQPRCPYAKIYLLP  313 (315)
Q Consensus       280 ~~~~L~v~i~~a~~l~~~~~--~~~~~pyvk~~llp  313 (315)
                      ....|.|+|+.|++|++.+.  ++.+||||+++|..
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g  530 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHG  530 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEES
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEec
Confidence            46679999999999999884  68899999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	4e-26
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	8e-14
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-13
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-13
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	4e-13
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-12
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-12
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-12
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-12
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-12
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-12
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-12
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-12
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	3e-12
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	4e-12
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	4e-12
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-11
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-11
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-11
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-11
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	3e-11
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-11
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-11
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-11
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-10
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-10
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	1e-10
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-10
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-10
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	6e-10
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-10
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	9e-10
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	9e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-09
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-09
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-09
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-09
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-09
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-09
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-09
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-08
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-08
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-08
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-08
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	4e-08
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	5e-08
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-08
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	6e-08
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	7e-08
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	1e-07
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-07
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	6e-07
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	7e-07
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-06
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	3e-06
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	2e-05
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	2e-05
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	3e-05
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	4e-05
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	2e-04
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	6e-04

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (243), Expect = 4e-26
 Identities = 54/107 (50%), Positives = 77/107 (71%)

Query: 84  LSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPA 143
           ++W+PS +G  +IG +IL K       + + LG+KV+GGK+ + G  GA I KVKKGS A
Sbjct: 1   VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLA 60

Query: 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           D+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR
Sbjct: 61  DVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 8e-14
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + +G+ ++  K       G  ++ V KG  AD++G L AGDQ++  +GRS+ G S +  
Sbjct: 13  QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 72

Query: 172 EDIIAESRQEPQVELIVSRR 191
            +++  +     V L V+++
Sbjct: 73  AELMTRTSSV--VTLEVAKQ 90

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +L + + GG   +      ++  V +G  A+  G ++ GD+++  NG+ +   +  + 
Sbjct: 27  EGSLDLALEGGV--DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84

Query: 172 EDIIAESRQEP--QVELIVSRRIQPKY 196
           E  + ++  +    ++L+V+     +Y
Sbjct: 85  EAALQKAWNQGGDWIDLVVAVCPPKEY 111

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 99  MILRKSGDRYPSASSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVI 156
            I R S D   S +  LGI+++GGK      G  GA I K+  G  A+  G L+ G QV+
Sbjct: 17  KITRDSKDHTVSGNG-LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75

Query: 157 EWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
           EWNG  +  K++++V+ II++   E   E+ V   +  
Sbjct: 76  EWNGIPLTSKTYEEVQSIISQQSGE--AEICVRLDLNM 111

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI + G +   +     II  + KG  A+  G +  GD+++  N  S++GK   +   +
Sbjct: 16  LGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHL 72

Query: 175 IAESRQEPQVELIVSRRIQPK 195
           +  + +   V L + ++   +
Sbjct: 73  LQMAGET--VTLKIKKQTDAQ 91

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            GI V GG+     E+G    +I  V  G PAD  G L   D+V+  NG  M        
Sbjct: 21  FGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFA 78

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAP 198
              + +S +     ++V R  + + AP
Sbjct: 79  VQQLRKSGKI--AAIVVKRPRKVQVAP 103

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
              LG  ++GG     G     ++ V     A  +G L  GDQ+I  NG+S+ G + ++ 
Sbjct: 12  PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA 71

Query: 172 EDIIAESRQEPQVELIV 188
             I+  ++    V L+V
Sbjct: 72  VAILKRTKGT--VTLMV 86

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG+K++GG    +G     I +V  G     +G L  GDQ++  N  SM G SF++ 
Sbjct: 17  ETGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA 75

Query: 172 EDII--AESRQEPQVELIVSR 190
           + II  A+ R E   E+   R
Sbjct: 76  KSIITRAKLRSESPWEIAFIR 96

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S  G +++GG    +  +  +I  V     AD +G L  GD+++  +G  + GK+ + V
Sbjct: 19  ESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75

Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
            D++  + +  QV L V R++   
Sbjct: 76  IDLMHHAARNGQVNLTVRRKVLSG 99

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +   G  +IGG    +      ++ V    PA  +G +  GD ++  N   + G +  DV
Sbjct: 29  NMGFGFTIIGGD---EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADV 85

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAP 198
             +         V L++ R     + P
Sbjct: 86  VKLFQSVPIGQSVNLVLCRGYPLPFDP 112

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            + LG  + GG   +   +   + +V     A  EG +  G++V+  NG+S++G +  D 
Sbjct: 19  GAGLGFSLAGGA--DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 76

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTL 200
             I+ ++R EP+  +IV+R++ P+  P L
Sbjct: 77  LAILRQAR-EPRQAVIVTRKLTPEAMPDL 104

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 112 SSTLGIKVIGGKLL------EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
           S +LGI ++GG+ +       +  RG  I+ V + SPA   G L  GD+++E +G  +R 
Sbjct: 12  SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 71

Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRI 192
            S +   + I ++     V  +V   I
Sbjct: 72  ASHEQAVEAIRKAGNP--VVFMVQSII 96

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +S LG  + GG             I K+  G  A  +G L   D ++  N   +R  +  
Sbjct: 11  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70

Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
              + + E+     V L V RR  P
Sbjct: 71  AAVEALKEAGSI--VRLYVMRRKPP 93

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 98  HMI-LRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGD 153
           HM+ L K+G        + GI ++ G++ +     T G  I+ +   SPA L G L  GD
Sbjct: 5   HMVTLDKTG------KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGD 58

Query: 154 QVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           +++  NG+ +R  + Q V D+I E+  +  +EL +  
Sbjct: 59  RILSLNGKDVRNSTEQAVIDLIKEADFK--IELEIQT 93

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  + GGK    G +   I ++ KG+ ++    +  GD++++  G +M+G +  + 
Sbjct: 39  SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKD 203
            +II      P V +++ R+       T + D
Sbjct: 99  WNIIKALPDGP-VTIVIRRKSLQSKETTAAGD 129

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 91  DGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGT-RGAIIEKVKKGSPADLEGHL 149
             + +   + L  SG      S+ LG+ + G K  E GT  G  I+ +  G  A  +G L
Sbjct: 21  SSEQLTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRL 74

Query: 150 LAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP-----QVELIVSRRIQP 194
              DQ+I  NG ++ GKS  +  + +  S          ++L++ RR  P
Sbjct: 75  RMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGKS 167
           P  +   G  V GG    D     I+ +V  G+PADL    L  GDQV+  NGR +   +
Sbjct: 16  PDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 72

Query: 168 FQDVEDIIAESRQEPQ--VELIVSRRIQPKYA 197
              V   I  S +     + L+V         
Sbjct: 73  HDQVVLFIKASCERHSGELMLLVRPNAVYDVV 104

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            S LG+ +I G     G  G  I+ +  GSPA  +G L  GD+++E NG S+ G  +   
Sbjct: 18  PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRA 77

Query: 172 EDIIAESRQEPQVELIVSRR 191
            D+I    ++  +  +V++ 
Sbjct: 78  VDLIRHGGKK--MRFLVAKS 95

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 95  MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQ 154
           MI  + L           + LGI ++G    E G  G  I  + KG     +G +  GD 
Sbjct: 1   MIITVTLNMEK------YNFLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDM 53

Query: 155 VIEWNGRSMRGKSFQDVEDIIAESRQEPQ-VELIVSRR 191
           +++ N  +    S  D   ++ +   +P  + L V++ 
Sbjct: 54  LLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL 91

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 112 SSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
              LGI +IG  +  D      G  ++ V +G  A  +G +   DQ++E +G S+ G + 
Sbjct: 12  EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 71

Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
                ++  ++    V  ++ R 
Sbjct: 72  NFAATVLRNTKGN--VRFVIGRE 92

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI +      + G    +I  +KKGS A   G L  GD+++  +   +   S +D   I
Sbjct: 24  LGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQI 82

Query: 175 IAESRQEPQVELIVSRR 191
           + +      V+L + + 
Sbjct: 83  LQQCEDL--VKLKIRKD 97

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 115 LGIKVIGGK-LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
            G+++ GG    E  +   ++  ++  SPA+  G L  GD+V+  NG +    + ++   
Sbjct: 22  FGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQ 81

Query: 174 IIAESRQEPQVELIVSR 190
           ++ ++    +V L V  
Sbjct: 82  LLRDAALAHKVVLEVEF 98

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           ++TLGI + GG           I  +++G  A   G L  G  ++E NG ++RGK  ++ 
Sbjct: 16  AATLGIAIEGGA--NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREA 73

Query: 172 EDIIAESRQEP---QVELIVSRR 191
             IIAE+ +      ++ +V+  
Sbjct: 74  ARIIAEAFKTKDRDYIDFLVTEF 96

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 6e-11
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ ++            II  +  G PA+  G L  GDQ++  NG S+ G      + I
Sbjct: 12  LGVVIVESGW-GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSI 70

Query: 175 IAESRQEPQVELIV 188
           I   + + +V+L +
Sbjct: 71  IKGLKNQSRVKLNI 84

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (136), Expect = 8e-11
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 112 SSTLGIKVIGGK-LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
            +  GI++ G     E  +   +I  ++  SPA+  G L  GD+V+  NG      +F++
Sbjct: 26  VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85

Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAPT 199
              ++ +S    +V L +   +     P+
Sbjct: 86  ANQLLRDSSITSKVTLEIEFDVAESVIPS 114

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              LG  + GG       G     I K+ +G  A  +G L  GD+++  N  +++    +
Sbjct: 11  PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE 70

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
           +    +  +     V L V++ 
Sbjct: 71  EAVASLKNTSDM--VYLKVAKP 90

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVIGGKLLED-----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
           S +LG  +IGG+   D      + G  + K+    PA  EG L   D++IE NGR +   
Sbjct: 18  SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
           +     +    +++   + + V RR   
Sbjct: 78  THDQAVEAFKTAKEP--IVVQVLRRTSG 103

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LGI + GG+   +     +I K+ KG  AD    L  GD ++  NG  +   +  +    
Sbjct: 18  LGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74

Query: 175 IAESRQEPQVELIVSRR 191
           + ++ +E  V L V   
Sbjct: 75  LKKTGKE--VVLEVKYM 89

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 112 SSTLGIKVIGGK-----LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
              LG  + GG             G  + +V+   PA     L  GD++I+ NG S    
Sbjct: 20  DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 77

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRI 192
                  ++     +  VELI+ R +
Sbjct: 78  EHGQAVSLLKTF--QNTVELIIVREV 101

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +  S LGI +              I+++K  S  D  G L  GD ++  +G SM   S  
Sbjct: 24  TPGSALGISLTTTS--LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL 81

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPK 195
           +   ++A   ++  V L +    Q +
Sbjct: 82  EATKLLASISEK--VRLEILPVPQSQ 105

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (128), Expect = 6e-10
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S+ LG  ++GG+       G  I  +  G PADL G L  GDQ++  NG  +R  S +  
Sbjct: 19  STGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 74

Query: 172 EDIIAESRQEPQVELIVSRRIQ 193
              +  + Q   V +I   + +
Sbjct: 75  AIALKNAGQT--VTIIAQYKPE 94

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (126), Expect = 8e-10
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 98  HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE 157
            + L K            G  V  G       +G  ++ ++   P D  G L   D++++
Sbjct: 9   KVTLYKDSG-----MEDFGFSVADGL----LEKGVYVKNIRPAGPGD-LGGLKPYDRLLQ 58

Query: 158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
            N    R      V  +IAES  +  ++L++SR 
Sbjct: 59  VNHVRTRDFDCCLVVPLIAESGNK--LDLVISRN 90

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 9e-10
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S  LG  +  G        G  I  VK GS +  E  L  GDQ++E NG        ++ 
Sbjct: 19  SRGLGCSISSGP---IQKPGIFISHVKPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEA 74

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
            +++   +    + + +      +   T
Sbjct: 75  VNVL---KSSRSLTISIVAAAGRELFMT 99

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 9e-10
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +  G  + G K    G  G  I  V+ GSPA+  G LLAGD+++E NG ++  ++ Q V
Sbjct: 13  PNGYGFHLHGEK----GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQV 67

Query: 172 EDIIAESRQEPQVELIVSRR 191
              I  +     V L+V   
Sbjct: 68  VSRIRAALN--AVRLLVVDP 85

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
               G ++ GGK   D      I ++  GS A  +  L  GD V+  +G +    +  + 
Sbjct: 10  PGPWGFRLQGGK---DFNMPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEA 65

Query: 172 EDIIAESRQEPQVELIVSR 190
           ++ I  +     + L + +
Sbjct: 66  QNKIKSASYN--LSLTLQK 82

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +    +GI +   +         I+ ++  G     +G L  GD++ E NG S+  ++ +
Sbjct: 10  NTDEPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVE 64

Query: 170 DVEDIIAESRQEPQVELIVSRR 191
            ++ ++ E R     +++ S R
Sbjct: 65  QLQKMLREMRGSITFKIVPSYR 86

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 112 SSTLGIKVI-----GGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
             +LGI V      GG        G  ++ +     A+ +G +  GD+V+  NG S+ G 
Sbjct: 14  DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73

Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
           + +   + +  + Q   V L++ +   P
Sbjct: 74  THKQAVETLRNTGQV--VHLLLEKGQVP 99

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           +   G  + GG+   +      + ++ +  PA   G +  GDQ+IE NG S R  +    
Sbjct: 21  AKGFGFSIRGGR---EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARA 77

Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
            ++I    +  +V L++ R     
Sbjct: 78  IELIKSGGR--RVRLLLKRGTGSG 99

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           LG  + GGK       G  G  + ++ +G  A   G L  GD+V+  NG  +        
Sbjct: 20  LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHA 79

Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
             ++  +   P + L++ R     
Sbjct: 80  VSLLTAA--SPTIALLLEREAGSG 101

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
                 ++ V  G PA+  G L   D V++ N R +      ++   I     E  + L+
Sbjct: 16  CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILL 72

Query: 188 VSRRI 192
           V R +
Sbjct: 73  VWRMV 77

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 110 SASSTLGIKVIGGKLLEDGT------RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM 163
           +    LGI + GG     G        G  I KV     A  +G L  G +++E N +S+
Sbjct: 18  APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSL 77

Query: 164 RGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
            G +  +   ++        + ++V    + 
Sbjct: 78  LGLTHGEAVQLLRSVGDT--LTVLVCDGFES 106

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
            +  G ++ GG+   D     I+ KV +   A+    L  GD ++  NG+S       + 
Sbjct: 15  PAPWGFRISGGR---DFHTPIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEA 70

Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
           +  I +S     + L + R   P
Sbjct: 71  QSKIRQSAS--PLRLQLDRSSGP 91

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 100 ILRKSGDRYPSASSTLGIKVIGGK------LLEDGTRGAIIEKVKKGSPADLEGHLLAGD 153
           +L+   D+       LG  +  G          +   G  I ++  G  A+  G L   D
Sbjct: 8   LLKHGSDK------PLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVND 61

Query: 154 QVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
           +VIE NG  + GK+   V D++  +     + + V
Sbjct: 62  EVIEVNGIEVAGKTLDQVTDMMVANSSN--LIITV 94

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ V      ED   G  I ++   S A  +G +  GD++I+ NG  ++ +  ++   +
Sbjct: 34  LGLTVCYRTDDEDDI-GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVAL 90

Query: 175 IAESRQEPQVELIVSRR 191
           +     +    L+++R 
Sbjct: 91  LTSEENK-NFSLLIARP 106

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
             A   LG  + GG    +   G  +  V+ GS A+ EG L  GDQ++  N +S+   + 
Sbjct: 17  AKAHEGLGFSIRGGS---EHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH 72

Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
            +    +   +   ++ L V   
Sbjct: 73  AEAVKAL---KGSKKLVLSVYSA 92

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (115), Expect = 4e-08
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  V             II  + +G  A+  G + AGD ++  N R +   S+    ++
Sbjct: 15  LGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70

Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSP 219
           +     E  V LI+     P+   T  +  +       ++ VT P
Sbjct: 71  LRGIASETHVVLILRG---PEGFTTHLETTFTGDGTPKTIRVTQP 112

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG+ VI             I  +     A  +G L  GD +I     ++ G + ++   +
Sbjct: 40  LGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL 93

Query: 175 IAESRQEPQVELIVSRRIQPK 195
           +        +++   R     
Sbjct: 94  LQNITIGTVLQIKAYRGFLEI 114

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
             +LG+ + GG    +   G  I  V  GS A+    L  GDQ++E NGRS       + 
Sbjct: 31  GRSLGLTIRGGA---EYGLGIYITGVDPGSEAE-GSGLKVGDQILEVNGRSFLNILHDEA 86

Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDV 204
             ++   +    + L V    +  +A T   + 
Sbjct: 87  VRLL---KSSRHLILTVKDVGRLPHARTTVDET 116

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 6e-08
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
              +  G ++ GG    D  +  +I ++  GS A    +L  GD ++  +G      +  
Sbjct: 12  PGPAPWGFRLSGGI---DFNQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHA 67

Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
           D +D I  +    Q+ L + R     ++P +S
Sbjct: 68  DAQDRIKAASY--QLCLKIDRAETRLWSPQVS 97

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
           P     LG  V  G          II  + +G  A+  G +  G ++IE NG+S+     
Sbjct: 9   PDLRYQLGFSVQNG----------IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPH 57

Query: 169 QDVEDIIAESRQEPQVELI 187
           + +  I++ +  E  ++ +
Sbjct: 58  EKIVHILSNAVGEIHMKTM 76

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
           +LG++V   K     T GA I +V  G  A   G +  G  V + + R +   S   +  
Sbjct: 4   SLGVQVTNDK----DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVA 56

Query: 174 IIAESRQEPQVELIVSRR 191
            +        V L     
Sbjct: 57  AVRSKAPGATVALTFQDP 74

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
           S  LGI ++ G+       G  + KV  GS A   G L  GDQ++E+NG ++R  + Q  
Sbjct: 29  SEPLGISIVSGE-----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQA 82

Query: 172 EDIIAESRQEPQVELIVSRR 191
             II +      + ++    
Sbjct: 83  RLIIGQQCDT--ITILAQYN 100

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 136 KVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
           +VK+         L  GD ++E N ++++  S  +V DI+ +     +  LI+ R   P 
Sbjct: 35  RVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPS 94

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +G+++           G  ++ V+  SPA L G L  GDQV++ NG +  G S      +
Sbjct: 16  IGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKV 68

Query: 175 IAESRQEPQVELIVSRR 191
           + ++  E  + + +  R
Sbjct: 69  LKQAFGEK-ITMTIRDR 84

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 112 SSTLGIKVIGGK---------LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRS 162
           S   G  + G K                   +E V +G  A   G L  GD +IE NG++
Sbjct: 16  SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQN 74

Query: 163 MRGKSFQDVEDIIAESRQEPQVELIVSR 190
           +     + V ++I +      + + V  
Sbjct: 75  VVKVGHRQVVNMIRQGGNT--LMVKVVM 100

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
           +    LG  V             II ++ KG  A+  G L  GD+V+E NG  +RGK   
Sbjct: 27  ARDIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN 80

Query: 170 DVEDIIAESRQEPQVELIV 188
           +V D++++      +  ++
Sbjct: 81  EVFDLLSDMHGT--LTFVL 97

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
           +   +G ++  VK G+PA   G L  GD +I  N +++  K+  ++  ++        + 
Sbjct: 21  KGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAV--KNIAELRKVLDSKPSV--LA 75

Query: 186 LIVSR 190
           L + R
Sbjct: 76  LNIQR 80

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
           G  I+ V  GSPA     L  G  +   NG      +       +        + +   +
Sbjct: 4   GVQIDSVVPGSPAS--KVLTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITTDQ 59

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
           I  + K S A     LL    + E NG+++ G     + DI++ S     V + +
Sbjct: 27  ITSIVKDSSAA-RNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTV--VTITI 78

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
           +D   G  +   K     +  G L  GD  +  NG  +       +  +     +  ++ 
Sbjct: 15  DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMS 71

Query: 186 LIVSRRIQPK 195
           L V R  Q  
Sbjct: 72  LTVERDGQQH 81

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           LG  + G   +        +  +     A        GD ++   G   +  +  +V  +
Sbjct: 28  LGFTLRGNTPV-------QVHFLDPHCSAS-LAGAKEGDYIVSIQGVDCKWLTVSEVMKL 79

Query: 175 IAESRQEPQVELIVSRRIQPK 195
           +     E  VE+ V   +   
Sbjct: 80  LKSFGGEE-VEMKVVSLLDST 99

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
           +G+++          +  ++     G PA+ +    AGD ++  +G +++G S  DV D+
Sbjct: 7   VGLEITYD---GGSGKDVVVLTPAPGGPAE-KAGARAGDVIVTVDGTAVKGMSLYDVSDL 62

Query: 175 IAESRQEP--QVELIVSRRIQPKYAPTLS 201
           +   + E   QVE+++     P    TL 
Sbjct: 63  L---QGEADSQVEVVLHAPGAPSNTRTLQ 88

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
           +K + D    +L+VT++ A  L  R +G+PR PY KIY LPDR
Sbjct: 5   IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.9
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.77
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.76
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.76
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.76
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.75
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.74
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.74
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.74
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.73
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.73
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.72
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.69
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.69
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.69
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.69
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.69
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.69
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.69
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.68
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.68
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.66
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.66
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.66
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.66
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.66
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.66
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.66
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.65
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.65
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.64
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.64
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.64
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.63
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.62
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.6
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.6
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.6
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.59
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.58
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.57
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.57
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.57
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.56
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.56
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.56
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.55
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.54
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.5
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.46
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.27
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.96
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	98.8
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	98.74
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	98.73
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	98.72
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.7
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.66
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	98.62
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.57
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	98.52
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.48
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.43
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.34
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.31
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.26
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.22
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	98.22

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-24  Score=173.26  Aligned_cols=108  Identities=50%  Similarity=0.853  Sum_probs=99.5

Q ss_pred             CCcCCCCCCceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeC
Q psy4487          84 LSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM  163 (315)
Q Consensus        84 ~~wq~s~~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l  163 (315)
                      ++|||+.|+.+.+++++|++......+.+.+|||+|+||++...++.|+||..|.+||+|+++|.|++||+|++|||+++
T Consensus         1 ~~~q~s~d~~~~i~~~il~r~~~~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~   80 (108)
T d2cssa1           1 VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL   80 (108)
T ss_dssp             EEEEECSSSSSEEEEEEECCSSCCSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBC
T ss_pred             CcceeCCCCceEeEEEEEEEEEEEecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEEC
Confidence            57999999999999999998876666778899999999998877888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         164 RGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       164 ~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+++|+||+++|+++.....|+|+|+|+
T Consensus        81 ~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          81 PGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             TTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            9999999999999876555699999985

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=9.4e-19  Score=136.45  Aligned_cols=89  Identities=24%  Similarity=0.330  Sum_probs=78.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +..++|+|..       .||||+|.||.+..  ....++||..|.+||+|+++|.|++||+|++|||+++.+++|++|++
T Consensus         2 ~~~V~l~k~~-------~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~   74 (93)
T d1rgra_           2 YEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVE   74 (93)
T ss_dssp             EEEEEEECCS-------SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHH
T ss_pred             CEEEEEEeCC-------CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHH
Confidence            4567888863       68999999998752  35679999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +|+++...  |.|+|.|...
T Consensus        75 ~l~~~~~~--v~L~v~R~~p   92 (93)
T d1rgra_          75 ALKEAGSI--VRLYVMRRKP   92 (93)
T ss_dssp             HHHHTTTE--EEEEEECSCC
T ss_pred             HHHcCCCE--EEEEEEeCCC
Confidence            99998765  9999998764

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=134.88  Aligned_cols=88  Identities=23%  Similarity=0.314  Sum_probs=77.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCC--CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL--EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~--~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      +..+.|.|..       .||||+|+||.+.  ..+..++||..|.++|+|+++|.|++||+|++|||+++.+++|+||++
T Consensus         2 v~~V~L~k~~-------~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~   74 (92)
T d2fe5a1           2 IMEVNLLKGP-------KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVA   74 (92)
T ss_dssp             EEEEEEECCT-------TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred             EEEEEEEECC-------CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHH
Confidence            4567788753       6899999999865  345689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCC
Q psy4487         174 IIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~  192 (315)
                      +|++++..  |+|+|.|+.
T Consensus        75 ~lk~~~~~--v~L~v~Rpg   91 (92)
T d2fe5a1          75 SLKNTSDM--VYLKVAKPG   91 (92)
T ss_dssp             HHHTCCSE--EEEEEECCC
T ss_pred             HHHcCCCE--EEEEEECCC
Confidence            99998765  999999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-18  Score=134.45  Aligned_cols=88  Identities=28%  Similarity=0.473  Sum_probs=78.8

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..++|++.        .||||+|+||.+......|+||+.|.+||+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus         4 ei~~v~l~~~--------~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~   75 (92)
T d1t2ma1           4 EIITVTLKKQ--------NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL   75 (92)
T ss_dssp             EEEEEEEECS--------SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHH
T ss_pred             eEEEEEEeCC--------CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHH
Confidence            4556677664        47999999998877777899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      |+++...  |+|+|.|.-
T Consensus        76 l~~~~~~--v~L~v~R~g   91 (92)
T d1t2ma1          76 MTRTSSV--VTLEVAKQG   91 (92)
T ss_dssp             HHSCCSE--EEEEEEECC
T ss_pred             HHcCCCe--EEEEEEeCC
Confidence            9998765  999999864

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.76  E-value=1.4e-18  Score=135.76  Aligned_cols=90  Identities=22%  Similarity=0.340  Sum_probs=77.9

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      +|..++|+|+.      .++|||+|+||.+. .++.|+||+.|.|||+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus         1 ~i~tV~l~k~~------~~~lGi~i~gg~~~-~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~l   73 (92)
T d2f0aa1           1 MIITVTLNMEK------YNFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRV   73 (92)
T ss_dssp             CEEEEEECHHH------HCSCCEEEECCCCT-TSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEeCC------CCccCEEEEccCCC-CCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHH
Confidence            46678888875      46999999999874 456799999999999999999999999999999999999999999999


Q ss_pred             HHhcCC-CCcEEEEEEeC
Q psy4487         175 IAESRQ-EPQVELIVSRR  191 (315)
Q Consensus       175 Lk~s~~-~~~V~LvV~R~  191 (315)
                      |+++.. ...|+|+|.|.
T Consensus        74 lk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          74 LRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             HHHHHHSSSCEEEEEECC
T ss_pred             HHhccCCCCcEEEEEEeC
Confidence            987522 12499999985

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5e-18  Score=135.80  Aligned_cols=89  Identities=25%  Similarity=0.468  Sum_probs=78.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      .+..++|+|..       .+|||+|+||++.     ...+.++||.+|.++|+|+++|+|++||+|++|||+++.+++|+
T Consensus         8 ~~~~V~l~k~~-------~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~   80 (107)
T d1uhpa_           8 KSLTLVLHRDS-------GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD   80 (107)
T ss_dssp             EEEEEEECCSS-------SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHH
T ss_pred             CEEEEEEEECC-------CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHH
Confidence            35677888764       5899999999865     23467899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ||+++|+++...  |.|+|.|..
T Consensus        81 eav~~lk~~~~~--v~l~v~r~~  101 (107)
T d1uhpa_          81 QAVEAFKTAKEP--IVVQVLRRT  101 (107)
T ss_dssp             HHHHHHHHCCSS--EEEEEEECC
T ss_pred             HHHHHHHhCCCc--EEEEEEECC
Confidence            999999999876  999998765

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.6e-18  Score=134.18  Aligned_cols=88  Identities=32%  Similarity=0.559  Sum_probs=78.1

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .+..++|+|..      ..+|||+|+||.+..   ....|+||..|.|+|+|+++|.|++||+|++|||+++.+++|++|
T Consensus         3 ~i~~V~L~k~~------~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~   76 (94)
T d1ihja_           3 LIHMVTLDKTG------KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV   76 (94)
T ss_dssp             EEEEEEEECTT------SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEEEeCC------CCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHH
Confidence            46678898865      468999999998652   345689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEe
Q psy4487         172 EDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R  190 (315)
                      +++|+++...  |+|+|+|
T Consensus        77 ~~ll~~~~~~--v~L~V~R   93 (94)
T d1ihja_          77 IDLIKEADFK--IELEIQT   93 (94)
T ss_dssp             HHHHHHSCSE--EEEEEEE
T ss_pred             HHHHHcCCCE--EEEEEEe
Confidence            9999998866  9999988

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.7e-18  Score=140.82  Aligned_cols=95  Identities=21%  Similarity=0.375  Sum_probs=83.8

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...+.+|+|.|..       .||||+|+||.+...++.++||.+|.+||+|+++|+|++||+||+|||+++.+++|+||+
T Consensus        27 ~~~~~~V~l~k~~-------~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav   99 (130)
T d1i16a_          27 EATVCTVTLEKMS-------AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAW   99 (130)
T ss_dssp             SEEEEEEEEETTS-------SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHH
T ss_pred             CCeEEEEEEEeCC-------CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHH
Confidence            3457778898864       589999999998777778999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ++|++++.. .|.|+|+|.....
T Consensus       100 ~~l~~~~~~-~v~l~v~r~~~~~  121 (130)
T d1i16a_         100 NIIKALPDG-PVTIVIRRKSLQS  121 (130)
T ss_dssp             HHHHTSCSS-EEEEEEEEESSCC
T ss_pred             HHHHcCCCC-eEEEEEEcCCCCC
Confidence            999998753 4999998886543

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.4e-18  Score=132.90  Aligned_cols=86  Identities=29%  Similarity=0.509  Sum_probs=71.9

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCC------CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLL------EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~------~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .+.|.|..      +.+|||+|+||+..      .....|+||++|.++|+|+++|+|++||+|++|||+++.+++|+||
T Consensus         4 ~V~l~k~~------~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea   77 (96)
T d2fcfa1           4 RVELWREP------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA   77 (96)
T ss_dssp             EEEECCCC-------CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEeCC------CCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHH
Confidence            46788865      47899999998754      2334689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEEEeC
Q psy4487         172 EDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       172 v~iLk~s~~~~~V~LvV~R~  191 (315)
                      +++|+++...  |+|+|+|-
T Consensus        78 ~~~lk~~~~~--v~L~V~r~   95 (96)
T d2fcfa1          78 VEAIRKAGNP--VVFMVQSI   95 (96)
T ss_dssp             HHHHHTCCSS--EEEEEECC
T ss_pred             HHHHHcCCCe--EEEEEEEc
Confidence            9999998876  99999874

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.9e-18  Score=134.32  Aligned_cols=91  Identities=22%  Similarity=0.402  Sum_probs=78.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      -..++|.|..       .||||+|.||++.   .....++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+
T Consensus         8 ~~~v~l~k~~-------~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~   80 (105)
T d1whaa_           8 RHVACLARSE-------RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAV   80 (105)
T ss_dssp             EEEEEECCCT-------TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CEEEEEEECC-------CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHH
Confidence            3445677764       6899999999865   23567999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ++|+++...  |+|+|.|.....
T Consensus        81 ~~l~~~~~~--v~l~v~R~~~~~  101 (105)
T d1whaa_          81 SLLTAASPT--IALLLEREAGSG  101 (105)
T ss_dssp             HHHTSCCSC--EEEEEEECCCCC
T ss_pred             HHHHcCCCe--EEEEEEECCCCc
Confidence            999998766  999999976543

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.1e-17  Score=131.63  Aligned_cols=89  Identities=21%  Similarity=0.303  Sum_probs=77.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcC-----cCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGG-----KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGG-----k~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      +..|+|.|..       .+|||+|.++     ........++||..|.++|+|+++|+|++||+|++|||+++.+++|+|
T Consensus         5 ~~~V~L~k~~-------~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~   77 (99)
T d1ozia_           5 TFEVELAKTD-------GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQ   77 (99)
T ss_dssp             EEEEEEECCS-------SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHH
T ss_pred             EEEEEEEECC-------CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHH
Confidence            4567888863       5899999864     344445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         171 VEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      |+++|++++..  |+|+|+|...
T Consensus        78 a~~~lk~~~~~--v~L~v~R~~~   98 (99)
T d1ozia_          78 AVETLRNTGQV--VHLLLEKGQV   98 (99)
T ss_dssp             HHHHHHHSCSE--EEEEEECCCC
T ss_pred             HHHHHHCCCCe--EEEEEEeCCC
Confidence            99999998755  9999999753

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.2e-18  Score=134.95  Aligned_cols=89  Identities=28%  Similarity=0.472  Sum_probs=81.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..|.|.|..       .+|||.|+||.+...+..++||..|.++|+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus         8 ~~~~V~l~k~~-------~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~l   80 (110)
T d1um1a_           8 YVFTVELERGP-------SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL   80 (110)
T ss_dssp             CEEEEEEECCT-------TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHH
T ss_pred             CEEEEEEEECC-------CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHH
Confidence            47788899875       58999999999877777899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      |++++..  |+|+|.|..
T Consensus        81 lk~~~~~--v~l~v~r~~   96 (110)
T d1um1a_          81 IRHGGKK--MRFLVAKSD   96 (110)
T ss_dssp             HHTCCSE--EEEEEECCC
T ss_pred             HHcCCCe--EEEEEEeCC
Confidence            9998765  999998865

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.5e-18  Score=136.46  Aligned_cols=97  Identities=30%  Similarity=0.587  Sum_probs=82.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ..++.|.|+.......+.||||+|.||++..  .++.|+||..|.++|+|+++|.|++||+|++|||+++.+++|+||++
T Consensus        13 ~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~   92 (117)
T d1ujda_          13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHH
Confidence            4567777765433344679999999998763  45678999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEeCCCC
Q psy4487         174 IIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      +|+++...  |+|+|+|....
T Consensus        93 ~i~~~~~~--v~l~v~r~~~~  111 (117)
T d1ujda_          93 IISQQSGE--AEICVRLDLNM  111 (117)
T ss_dssp             HHSCCSSC--EEEEEESSCCC
T ss_pred             HHHcCCCe--EEEEEEECCCC
Confidence            99998866  99999998754

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=131.00  Aligned_cols=88  Identities=23%  Similarity=0.397  Sum_probs=77.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcC---CCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKL---LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~---~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      +-.|.|.|..       .||||+|+||..   ......|+||+.|.++|+|+++|+|++||+|++|||+++.+++|++|+
T Consensus         3 ~~~V~L~k~~-------~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~   75 (94)
T d1wf8a1           3 LFPVELEKDE-------DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAA   75 (94)
T ss_dssp             EEEEEEECBT-------TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHH
T ss_pred             EEEEEEEeCC-------CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHH
Confidence            4567888864       589999998653   234567899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCC
Q psy4487         173 DIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~  192 (315)
                      ++|++++..  |+|+|.|..
T Consensus        76 ~~l~~~~~~--v~L~V~R~k   93 (94)
T d1wf8a1          76 TVLRNTKGN--VRFVIGREK   93 (94)
T ss_dssp             HHHHHCCSE--EEEEEEEEC
T ss_pred             HHHHcCCCe--EEEEEEeCC
Confidence            999998866  999998864

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.6e-18  Score=129.82  Aligned_cols=85  Identities=26%  Similarity=0.428  Sum_probs=76.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..++|+|..       .+|||+|.||.+...+..++||.+|.++|+|+++|.|++||+|++|||+++.+++|++|+++|
T Consensus         3 ~~~V~l~K~~-------~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l   75 (88)
T d2fnea1           3 CKSITLERGP-------DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL   75 (88)
T ss_dssp             EEEEEECCBT-------TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEeCC-------CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHH
Confidence            4567888753       589999999988766778999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEE
Q psy4487         176 AESRQEPQVELIVS  189 (315)
Q Consensus       176 k~s~~~~~V~LvV~  189 (315)
                      +++.+.  |+|+|-
T Consensus        76 ~~~~~~--v~L~Vl   87 (88)
T d2fnea1          76 KRTKGT--VTLMVL   87 (88)
T ss_dssp             HHCCSS--EEEEEE
T ss_pred             HcCCCc--EEEEEE
Confidence            999877  888873

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.5e-17  Score=129.44  Aligned_cols=85  Identities=26%  Similarity=0.405  Sum_probs=76.0

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ..+++|+|..      ..+|||+|.||.+.   ..++||..|.|+|+|+++|.|++||+|++|||+++.+++|++|+++|
T Consensus         5 ~r~V~l~k~~------~~~lG~~i~gg~~~---~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l   75 (90)
T d1qava_           5 RRRVTVRKAD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL   75 (90)
T ss_dssp             CEEEEEECCT------TTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEeCC------CCccCEEEEccccC---CCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHH
Confidence            4567888865      46899999999764   35899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeC
Q psy4487         176 AESRQEPQVELIVSRR  191 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~  191 (315)
                      +++...  |+|+|+|.
T Consensus        76 ~~~~~~--v~l~v~~~   89 (90)
T d1qava_          76 KKTGKE--VVLEVKYM   89 (90)
T ss_dssp             HTCCSE--EEEEEEEC
T ss_pred             HhCCCe--EEEEEEEe
Confidence            999865  99999875

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.5e-18  Score=135.99  Aligned_cols=92  Identities=21%  Similarity=0.359  Sum_probs=79.9

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ  169 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~  169 (315)
                      +.+++|.|..      +.+|||+|.||.+..      ....++||.+|.++|+|+++|+|++||+|++|||+++.+++|+
T Consensus        10 ~~~V~l~k~~------~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~   83 (111)
T d1ujua_          10 LRELCIQKAP------GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             SSCEEEECCT------TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             eEEEEEEeCC------CCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHH
Confidence            4567888875      468999999997642      3457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         170 DVEDIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       170 eav~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ||+++|+++...  |+|+|.|.....
T Consensus        84 ea~~~lk~~~~~--v~L~V~r~~~~~  107 (111)
T d1ujua_          84 EAVQLLRSVGDT--LTVLVCDGFESG  107 (111)
T ss_dssp             HHHHHHSSCSSE--EEECCCCCCCCS
T ss_pred             HHHHHHHcCCCe--EEEEEEECCCCc
Confidence            999999998765  999998877543

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=9.3e-17  Score=125.82  Aligned_cols=89  Identities=24%  Similarity=0.437  Sum_probs=78.2

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+-.|.|+|..       .+|||+|.||.+.   ..++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+.+
T Consensus         3 ~i~tV~l~k~~-------~~lG~~i~g~~~~---~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~   72 (95)
T d1n7ea_           3 IIYTVELKRYG-------GPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHL   72 (95)
T ss_dssp             CEEEEEEECTT-------SCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEECC-------CcEeEEEEecccC---CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45667888753       6899999998753   3579999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |+++...  |+|+|.|.....
T Consensus        73 l~~~~~~--v~l~v~r~~~~~   91 (95)
T d1n7ea_          73 LQMAGET--VTLKIKKQTDAQ   91 (95)
T ss_dssp             HHTCCSE--EEEEEECCCCCC
T ss_pred             HHcCCCe--EEEEEEECCCCc
Confidence            9998766  999999987554

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.1e-16  Score=131.08  Aligned_cols=96  Identities=21%  Similarity=0.355  Sum_probs=82.0

Q ss_pred             eeEEEEEEeccCCCCCCCCCccceEEEcCcCC-CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLL-EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ..+.+++|.|..      ..||||+|.||+.. .....++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+
T Consensus        14 ~~~~ev~l~k~~------~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~   87 (122)
T d1v5qa_          14 TETTEVVLTADP------VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN   87 (122)
T ss_dssp             EEEEEEEECCCS------SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHH
T ss_pred             ceeEEEEEecCC------CCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHH
Confidence            356788898875      46899999999866 34567899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ++|+++....++.|.+.++....
T Consensus        88 ~~lk~~~~~~~l~l~~~~~~~~~  110 (122)
T d1v5qa_          88 QLLRDSSITSKVTLEIEFDVAES  110 (122)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCCS
T ss_pred             HHHHcCCCceEEEEEEeccCCCC
Confidence            99999887655777766666544

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.5e-17  Score=127.85  Aligned_cols=88  Identities=25%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +.+++|.|..      +.+|||.+.||.+... ..++||..|.+||+|+++|+|++||+|++|||+++.+++|+||+++|
T Consensus        11 ~~~V~l~k~~------~~~lG~~v~~~~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll   83 (99)
T d1p1da2          11 TFHVKLPKKH------SVELGITISSPSSRKP-GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL   83 (99)
T ss_dssp             CEEEEECCCS------SCCCCCEEECSCSSST-TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred             cEEEEEEECC------CCccCEEEEecCCCCC-CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHH
Confidence            3456787754      4789999999876543 35799999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      ++++..  |+|+|+|+.
T Consensus        84 ~~~~~~--v~L~V~r~~   98 (99)
T d1p1da2          84 QQCEDL--VKLKIRKDE   98 (99)
T ss_dssp             HHCTTC--EEEEEECCC
T ss_pred             HcCCCe--EEEEEEeCC
Confidence            999876  999999864

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.2e-17  Score=129.62  Aligned_cols=91  Identities=26%  Similarity=0.408  Sum_probs=77.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      ....+.|+|..       .||||+|.||.+.   ..++||..|.++++|+++|.|++||+|++|||+++.+++|+||+++
T Consensus         9 ~~~~V~l~k~~-------~glG~~i~gg~~~---~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~   78 (103)
T d1uepa_           9 KELDVHLRRME-------SGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDL   78 (103)
T ss_dssp             EEECCEEESSS-------SSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             EEEEEEEEeCC-------ceEeEEEEecccC---CCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHH
Confidence            34457788764       6899999999764   3579999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |+++.....|+|+|.|.....
T Consensus        79 l~~~~~~~~v~l~v~r~~~s~   99 (103)
T d1uepa_          79 MHHAARNGQVNLTVRRKVLSG   99 (103)
T ss_dssp             HHHHHHHTEEEEEEEEECCCC
T ss_pred             HHhCCCCCEEEEEEEeCCCCC
Confidence            998754345999999976543

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=127.96  Aligned_cols=90  Identities=29%  Similarity=0.515  Sum_probs=74.3

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..++|.|..      +.+|||+|.||.+.  ...++||..|.+||+|+++|+|++||+|++|||+++.+++|+||+++|
T Consensus         9 ~~~v~l~k~~------~~~lG~~i~gg~~~--~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l   80 (107)
T d1x6da1           9 IHVTILHKEE------GAGLGFSLAGGADL--ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL   80 (107)
T ss_dssp             EEEEEEECCT------TSCCSEEEECCSSS--SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEcCC------CCccCEEEeeccCC--CCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHH
Confidence            5566787764      47899999999864  346899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +++.... +.+++.|...+
T Consensus        81 ~~~~~~~-~l~v~~r~~~p   98 (107)
T d1x6da1          81 RQAREPR-QAVIVTRKLTP   98 (107)
T ss_dssp             HHTTSSS-EEEEEEECCCS
T ss_pred             HcCCCCE-EEEEEECCCCC
Confidence            9988752 33334444433

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.4e-17  Score=134.42  Aligned_cols=96  Identities=30%  Similarity=0.465  Sum_probs=79.8

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCC-CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDG-TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV  171 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g-~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea  171 (315)
                      .....+|+|.+..      ..||||+|+||++...+ +.++||..|.++|+|+++|+|++||+|++|||+++.+++|+||
T Consensus        23 ~~~~~~v~l~~~~------~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~   96 (127)
T d1wg6a_          23 EQLTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEA   96 (127)
T ss_dssp             EEEEEEEECSSST------TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHH
T ss_pred             ccEEEEEEEccCC------CCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHH
Confidence            3445566676543      47899999999987543 4689999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC-----CCcEEEEEEeCCCC
Q psy4487         172 EDIIAESRQ-----EPQVELIVSRRIQP  194 (315)
Q Consensus       172 v~iLk~s~~-----~~~V~LvV~R~~~~  194 (315)
                      +++|+++..     ...|+|+|.|...+
T Consensus        97 ~~~lr~a~~~~~~~~~~V~L~V~R~~~p  124 (127)
T d1wg6a_          97 METLRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             HHHHHhcccccCCCCCEEEEEEeeCCCC
Confidence            999998632     12499999997654

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=129.04  Aligned_cols=95  Identities=21%  Similarity=0.332  Sum_probs=81.5

Q ss_pred             CCceeEEEEEEeccCCCCCCCCCccceEEEcCcCCC----CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCC
Q psy4487          91 DGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE----DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK  166 (315)
Q Consensus        91 ~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~----~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~  166 (315)
                      .|...+.+|+|.|..      ..+|||+|+||.+..    ....++||.+|.+||+|+++|.|++||+|++|||+++.++
T Consensus         6 sg~~~~~~V~l~r~~------~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~   79 (114)
T d1uewa_           6 SGSLQTSDVVIHRKE------NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM   79 (114)
T ss_dssp             SCCCCCEEEEEECCT------TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTS
T ss_pred             CCCceeEEEEEEeCC------CCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCC
Confidence            344567789999875      468999999987652    2245799999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         167 SFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       167 t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      +|+||+++|+++...  |+|+|.|...
T Consensus        80 ~~~ev~~ll~~~~~~--v~l~V~r~~~  104 (114)
T d1uewa_          80 PHADIVKLIKDAGLS--VTLRIIPQEE  104 (114)
T ss_dssp             CHHHHHHHHHHTTTE--EEEEECCCSC
T ss_pred             cHHHHHHHHHcCCCe--EEEEEEeCCC
Confidence            999999999998766  9999988654

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=125.91  Aligned_cols=76  Identities=26%  Similarity=0.421  Sum_probs=68.2

Q ss_pred             CccceEEEcCcCCC-----CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487         113 STLGIKVIGGKLLE-----DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI  187 (315)
Q Consensus       113 ~gLGfsIvGGk~~~-----~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv  187 (315)
                      .+|||+|.||++..     ..+.||||+.|.++|||++  .|++||+|++|||+++.+++|+||+++|++++..  |+|+
T Consensus        21 ~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~--v~L~   96 (103)
T d2h3la1          21 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT--VELI   96 (103)
T ss_dssp             SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSE--EEEE
T ss_pred             CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEE
Confidence            58999999998652     3467999999999999984  5999999999999999999999999999999866  9999


Q ss_pred             EEeCC
Q psy4487         188 VSRRI  192 (315)
Q Consensus       188 V~R~~  192 (315)
                      |.|..
T Consensus        97 V~R~~  101 (103)
T d2h3la1          97 IVREV  101 (103)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99875

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-16  Score=124.21  Aligned_cols=86  Identities=24%  Similarity=0.434  Sum_probs=75.5

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...++|.|..       .||||+|.||...   .....++||+.|.+||+|+++| |++||+|++|||+++.+++|.+|+
T Consensus         9 ~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~   80 (97)
T d1x5qa1           9 ELTLTILRQT-------GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAV   80 (97)
T ss_dssp             EEEEEEECSS-------SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             EEEEEEEeCC-------CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHH
Confidence            4467788764       6899999999865   2346789999999999999999 999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeC
Q psy4487         173 DIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~  191 (315)
                      .+|++++..  |.|+|.|+
T Consensus        81 ~~l~~~~~~--v~l~v~R~   97 (97)
T d1x5qa1          81 EALRGAGTA--VQMRVWRE   97 (97)
T ss_dssp             HHHHSCCSE--EEEEEEEC
T ss_pred             HHHhCCCCE--EEEEEEEC
Confidence            999998755  99999985

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=120.83  Aligned_cols=84  Identities=25%  Similarity=0.447  Sum_probs=71.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .|.|.|..      +.+|||.|++|.. .....++||.+|.++|+|+++|+|++||+|++|||+++.+++|+||+++|++
T Consensus         1 eV~l~k~~------g~~LGi~i~~~~~-~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~   73 (85)
T d1x45a1           1 DVFIEKQK------GEILGVVIVESGW-GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG   73 (85)
T ss_dssp             EEEEECCT------TSCCCEEEECCTT-TSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CeEEEeCC------CCccCEEEEeCCC-CCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            36777765      4799999986543 2334689999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEE
Q psy4487         178 SRQEPQVELIV  188 (315)
Q Consensus       178 s~~~~~V~LvV  188 (315)
                      ++....|+|.|
T Consensus        74 ~~~~~~v~L~V   84 (85)
T d1x45a1          74 LKNQSRVKLNI   84 (85)
T ss_dssp             TTTCSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            98775566654

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.2e-16  Score=123.94  Aligned_cols=86  Identities=29%  Similarity=0.452  Sum_probs=72.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..+++++.        .||||+|+||.+... ..++||+.|.+||+|+++|.|++||+|++|||+++.+++|+||+++|
T Consensus         9 ~~~v~~~~~--------~glG~~i~gg~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l   79 (96)
T d1wi4a1           9 FRVITVTKE--------TGLGLKILGGINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII   79 (96)
T ss_dssp             EEEEEECCS--------SCCCEEEEECSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHH
T ss_pred             EEEEEecCC--------CccCEEEEeccCCCC-CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            445556553        479999999987643 35899999999999999999999999999999999999999999999


Q ss_pred             HhcCC--CCcEEEEEEe
Q psy4487         176 AESRQ--EPQVELIVSR  190 (315)
Q Consensus       176 k~s~~--~~~V~LvV~R  190 (315)
                      +++..  ...++|.+.|
T Consensus        80 ~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          80 TRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             HHSCCSSSSCEEEEEEC
T ss_pred             HhccCCCCCeEEEEEEC
Confidence            99742  2348888765

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.8e-16  Score=125.99  Aligned_cols=84  Identities=27%  Similarity=0.502  Sum_probs=74.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|..       .||||+|.||.+.    .|+||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++|
T Consensus        10 ~r~V~l~k~~-------~glG~~i~~~~~~----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l   78 (102)
T d1tp5a1          10 PRRIVIHRGS-------TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   78 (102)
T ss_dssp             CEEEEEECTT-------SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCC-------CcccEEEEeccCC----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHH
Confidence            3577888753       5899999998753    5899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +++...  |+|+|+|..
T Consensus        79 ~~~~~~--v~L~v~~~~   93 (102)
T d1tp5a1          79 KNAGQT--VTIIAQYKP   93 (102)
T ss_dssp             HTSCSE--EEEEEEECH
T ss_pred             HcCCCe--EEEEEEECC
Confidence            998765  999998754

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=125.91  Aligned_cols=90  Identities=20%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED  173 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~  173 (315)
                      ...+++|.|..      ..+|||+|.||.+.. ....++||++|.++|+|+++|.|++||+|++|||+++.+++|+||++
T Consensus         8 e~~~V~l~~~~------~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~   81 (99)
T d1x5ra1           8 ETTEVVLCGDP------LSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQ   81 (99)
T ss_dssp             EEEEEEECCCT------TTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHH
T ss_pred             eeEEEEEEcCC------CCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45568888875      468999999998652 34578999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEEEe
Q psy4487         174 IIAESRQEPQVELIVSR  190 (315)
Q Consensus       174 iLk~s~~~~~V~LvV~R  190 (315)
                      +|+++....++.|.|..
T Consensus        82 ~lr~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          82 LLRDAALAHKVVLEVEF   98 (99)
T ss_dssp             HHHHHHTTTCEEEEEEE
T ss_pred             HHHhCCCCCEEEEEEEc
Confidence            99988776567777764

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.2e-16  Score=127.15  Aligned_cols=90  Identities=22%  Similarity=0.321  Sum_probs=77.8

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..       .||||+|.||.+.   ..++||..|.++|+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus        19 ~~~~v~l~k~~-------~glG~~i~gg~~~---~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~   88 (123)
T d1ueqa_          19 TFLSTTLKKSN-------MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL   88 (123)
T ss_dssp             EEEEEEEECCT-------TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             eEEEEEEEECC-------CeeCEEEEeecCC---CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHH
Confidence            34467777764       6899999999864   3589999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      |+++.....|+|+|.|....
T Consensus        89 l~~~~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          89 FQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             HHTSCTTCEEEEEEEESCCC
T ss_pred             HHcCCCCCEEEEEEEcCCCC
Confidence            99986444599999996543

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.9e-16  Score=124.92  Aligned_cols=86  Identities=29%  Similarity=0.386  Sum_probs=74.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...+.|.|..      ..+|||+|.||++.   ..|+||..|.++|+|+++| |++||+|++|||+++.+++|+||+++|
T Consensus        16 pr~V~l~r~~------~~~lGf~i~gg~~~---~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~ll   85 (104)
T d1wi2a_          16 PRIVTLKKPP------GAQLGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEIL   85 (104)
T ss_dssp             CEEEEECCCT------TCCCSEEEECCSSS---CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEeCC------CCCcceEEEccccC---CCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHH
Confidence            3567788865      36899999999864   3589999999999999998 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCCCC
Q psy4487         176 AESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~~~  194 (315)
                      +.+. .  |.|+|+|...+
T Consensus        86 k~~~-~--v~l~V~~~~~P  101 (104)
T d1wi2a_          86 KTAR-E--ISMRVRFFSGP  101 (104)
T ss_dssp             HHSS-S--EEEEEECCCCS
T ss_pred             hcCC-e--EEEEEEECCCC
Confidence            9864 4  99999876544

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2e-16  Score=125.78  Aligned_cols=89  Identities=27%  Similarity=0.367  Sum_probs=76.4

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...++|.|..      ..+|||+|.||.+..   ....++||.+|.+||+|+  +.|++||+|++|||+++.+++|+||+
T Consensus         8 ~~tV~l~k~~------~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~   79 (104)
T d2csja1           8 QYTVTLQKDS------KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAV   79 (104)
T ss_dssp             EEEEEEECCS------SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHH
T ss_pred             cEEEEEEeCC------CCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4457788875      468999999998752   346789999999999997  55999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++|++++..  |.|+|+|....
T Consensus        80 ~ll~~~~~~--v~l~V~R~~~~   99 (104)
T d2csja1          80 QQLRKSGKI--AAIVVKRPRKV   99 (104)
T ss_dssp             HHHHHSCSE--EEEEEEEEEEC
T ss_pred             HHHHcCCCE--EEEEEEeCCCC
Confidence            999998755  99999987543

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=5.8e-16  Score=120.41  Aligned_cols=85  Identities=27%  Similarity=0.426  Sum_probs=75.3

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..++|.|..     +..+|||+|.+|...    .|+||..|.++|+|+++| |++||+|++|||+++.+++|.+|+.+
T Consensus         6 e~~~v~l~k~~-----~~~~~Gf~i~~~~~~----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~   75 (91)
T d1m5za_           6 ELHKVTLYKDS-----GMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPL   75 (91)
T ss_dssp             EEEEEEEECCT-----TCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             ceEEEEEEECC-----CCCceeEEEeccCCC----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            46677888864     246899999998753    589999999999999988 99999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeC
Q psy4487         175 IAESRQEPQVELIVSRR  191 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~  191 (315)
                      |++++..  |+|+|.|.
T Consensus        76 l~~~~~~--v~L~v~R~   90 (91)
T d1m5za_          76 IAESGNK--LDLVISRN   90 (91)
T ss_dssp             HHTSTTE--EEEEEEEC
T ss_pred             HHCCCCE--EEEEEEEC
Confidence            9998866  99999986

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-16  Score=122.12  Aligned_cols=75  Identities=20%  Similarity=0.341  Sum_probs=67.9

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      +.+|||+|.||++.   ..++||..|.+|++|+. +.|++||+|++|||+++.+++|+||+++|++++..  |+|+|+|.
T Consensus        10 ~~~~Gf~i~gg~~~---~~~v~V~~v~~gs~A~~-~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~--v~L~V~R~   83 (85)
T d1rgwa_          10 PGPWGFRLQGGKDF---NMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN--LSLTLQKS   83 (85)
T ss_dssp             SSCCCEEECCCGGG---TSCCBEEEECTTSHHHH-SSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC--EEEEEESC
T ss_pred             CCCCCEEEEeecCC---CCCEEEEEecCCChHHh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE--EEEEEEEC
Confidence            36899999999875   35799999999999996 56999999999999999999999999999998866  99999986


Q ss_pred             C
Q psy4487         192 I  192 (315)
Q Consensus       192 ~  192 (315)
                      .
T Consensus        84 ~   84 (85)
T d1rgwa_          84 K   84 (85)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.3e-16  Score=123.16  Aligned_cols=84  Identities=24%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      +..|.|.|..      ..||||+|.||.+    ..++||+.|.+||+|+++|.|++||+|++|||+++.+++|+||+++|
T Consensus         2 i~~V~l~k~~------~~glG~~i~~~~~----~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l   71 (112)
T d1qaua_           2 VISVRLFKRK------VGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL   71 (112)
T ss_dssp             EEEEEEECBT------TTBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred             eEEEEEEECC------CCcEeEEEEeecC----CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHH
Confidence            4567777765      4799999999865    35899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEE
Q psy4487         176 AESRQEPQVELIVS  189 (315)
Q Consensus       176 k~s~~~~~V~LvV~  189 (315)
                      +.+.....+.+++.
T Consensus        72 ~~~~~~~~~~l~~~   85 (112)
T d1qaua_          72 RGIASETHVVLILR   85 (112)
T ss_dssp             HHSCSSSEEEEEEE
T ss_pred             HcCCCCcEEEEEEe
Confidence            99887633444333

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.5e-16  Score=119.60  Aligned_cols=82  Identities=33%  Similarity=0.449  Sum_probs=72.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .++|.|..       .||||+|.|+..    ..++||..|.+||+|+++| |++||+|++|||+++.+++|+||+++|++
T Consensus         6 ~v~l~k~~-------~g~Gf~i~~~~~----~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~   73 (91)
T d1g9oa_           6 LCCLEKGP-------NGYGFHLHGEKG----KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA   73 (91)
T ss_dssp             EEEEECBT-------TBCCEEEEECTT----CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEEEEECC-------CeeeEEEEecCC----CCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45677764       689999999854    3689999999999999988 99999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEeCCC
Q psy4487         178 SRQEPQVELIVSRRIQ  193 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~  193 (315)
                      +...  |+|+|.+...
T Consensus        74 ~~~~--v~L~v~~~~~   87 (91)
T d1g9oa_          74 ALNA--VRLLVVDPET   87 (91)
T ss_dssp             CSSE--EEEEEECCCC
T ss_pred             CCCe--EEEEEECCCC
Confidence            8766  9999987654

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=127.29  Aligned_cols=91  Identities=22%  Similarity=0.375  Sum_probs=79.6

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ++.+..+.|.|..       .||||+|.||++..   .++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+
T Consensus         9 ~~e~~~v~l~k~~-------~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~   78 (103)
T d1wfva_           9 DFDYFTVDMEKGA-------KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI   78 (103)
T ss_dssp             CSCCEECCEECCT-------TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHH
T ss_pred             CceEEEEEEEeCC-------CccCEEEEeeccCC---CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHH
Confidence            3556667787754       68999999998753   5799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         173 DIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      ++|++++..  |.|+|.|.....
T Consensus        79 ~~l~~~~~~--v~l~v~R~~~s~   99 (103)
T d1wfva_          79 ELIKSGGRR--VRLLLKRGTGSG   99 (103)
T ss_dssp             HHHHHHCSE--ECEEEECTTCSS
T ss_pred             HHHHcCCCE--EEEEEEECCCCc
Confidence            999998765  999999987554

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.8e-16  Score=123.98  Aligned_cols=78  Identities=23%  Similarity=0.401  Sum_probs=70.2

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||+|.||++..   .++||..|.++++|++.+ |++||+|++|||+++.+++|+||+++|+++...  |+|+|.|.
T Consensus        15 ~~~~Gf~i~gg~d~~---~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~--v~L~V~R~   88 (94)
T d1vb7a_          15 PAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP--LRLQLDRS   88 (94)
T ss_dssp             SSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS--EEEEEECC
T ss_pred             CCcCCEEEEeeccCC---CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEEC
Confidence            468999999998753   579999999999999755 999999999999999999999999999998866  99999998


Q ss_pred             CCCC
Q psy4487         192 IQPK  195 (315)
Q Consensus       192 ~~~~  195 (315)
                      ..+.
T Consensus        89 ~~ps   92 (94)
T d1vb7a_          89 SGPS   92 (94)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            7654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=9.2e-16  Score=120.80  Aligned_cols=87  Identities=26%  Similarity=0.447  Sum_probs=73.9

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      .++.|.|..     +..+|||+|.||....      ....|+||+.|.+||+|+++|.|++||+|++|||+++.+++|+|
T Consensus         4 r~V~L~k~~-----~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~   78 (98)
T d1rzxa_           4 RRVRLLKHG-----SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ   78 (98)
T ss_dssp             EEEEEECCC-----SSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEECC-----CCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHH
Confidence            456777653     2468999999987542      12457999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEe
Q psy4487         171 VEDIIAESRQEPQVELIVSR  190 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R  190 (315)
                      |+++|+++...  |+|+|..
T Consensus        79 ~~~~l~~~~~~--v~l~v~p   96 (98)
T d1rzxa_          79 VTDMMVANSSN--LIITVKP   96 (98)
T ss_dssp             HHHHHHHTCTE--EEEEEEC
T ss_pred             HHHHHHcCCCe--EEEEEEe
Confidence            99999998866  9998863

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=113.96  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=67.8

Q ss_pred             EEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhc
Q psy4487          99 MILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES  178 (315)
Q Consensus        99 v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s  178 (315)
                      ++|.|..       .||||++.|+.       ++||.+|.++|||+++| |+.||+|++|||+++.+++|.|++..|+++
T Consensus         1 v~l~r~~-------~g~Gf~l~~~~-------~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~   65 (77)
T d2f5ya1           1 ITIPRGK-------DGFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC   65 (77)
T ss_dssp             EEEECBT-------TBTSEEEECSS-------SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CEEecCC-------CcccEEEECCC-------CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCC
Confidence            3566653       68999999753       69999999999999988 999999999999999999999999999998


Q ss_pred             CCCCcEEEEEEeC
Q psy4487         179 RQEPQVELIVSRR  191 (315)
Q Consensus       179 ~~~~~V~LvV~R~  191 (315)
                      +..  ++|+|.|.
T Consensus        66 ~~~--v~L~v~R~   76 (77)
T d2f5ya1          66 PSE--IILLVWRM   76 (77)
T ss_dssp             SSE--EEEEEEEC
T ss_pred             CCE--EEEEEEEE
Confidence            865  99999885

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=124.27  Aligned_cols=85  Identities=29%  Similarity=0.384  Sum_probs=73.2

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      ..+.|.|..      +.+|||+|.||++..   .|+||..|.+||+|+++| |++||+||+|||+++.+++|+||+++|+
T Consensus        22 ~~v~l~~~~------~~~lGf~i~gg~~~~---~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          22 KKVNLVLGD------GRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             EEEEEECCS------SCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHT
T ss_pred             EEEEEEECC------CCccCEEEEeeccCC---CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            456777764      478999999998753   589999999999999988 9999999999999999999999999998


Q ss_pred             hcCCCCcEEEEEEeCCCC
Q psy4487         177 ESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~~~  194 (315)
                      ++.   +|.|+|.+....
T Consensus        92 ~~~---~v~l~v~~~~~~  106 (128)
T d1uf1a_          92 SSR---HLILTVKDVGRL  106 (128)
T ss_dssp             TCS---EEEEEEECCSCC
T ss_pred             cCC---cEEEEEEECCcC
Confidence            763   389998776543

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.6e-15  Score=117.78  Aligned_cols=85  Identities=25%  Similarity=0.292  Sum_probs=72.3

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCC---------CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLL---------EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF  168 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~---------~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~  168 (315)
                      .++|.|..      +.+|||.|.||...         .....++||..|.+||+|+++| |++||+|++|||+++.+++|
T Consensus         8 tV~l~r~~------~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h   80 (104)
T d1q3oa_           8 TVLLQKKD------SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH   80 (104)
T ss_dssp             EEEEECCT------TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEECC------CCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCH
Confidence            45676654      47899999998753         2334579999999999999987 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         169 QDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       169 ~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ++|+++|++++..  |+|+|.+.
T Consensus        81 ~evv~~ik~~~~~--v~L~V~~~  101 (104)
T d1q3oa_          81 RQVVNMIRQGGNT--LMVKVVMV  101 (104)
T ss_dssp             HHHHHHHHHTTTE--EEEEEEEE
T ss_pred             HHHHHHHHcCCCe--EEEEEEec
Confidence            9999999998766  99988663

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=116.03  Aligned_cols=79  Identities=20%  Similarity=0.409  Sum_probs=70.8

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|+|+.      +.+|||.|.++.+     .++||..|.+||+|+++|.|++||+|++|||+++.+++|++|+++|++
T Consensus         4 ~V~l~k~~------~~~lG~~l~~~~~-----~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~   72 (88)
T d1kwaa_           4 LVQFQKNT------DEPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             EEEEEECS------SSCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             EEEEEeCC------CCCccEEEEEcCC-----CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            46788875      4799999998753     489999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEE
Q psy4487         178 SRQEPQVELIVS  189 (315)
Q Consensus       178 s~~~~~V~LvV~  189 (315)
                      +.+.  |+|.|.
T Consensus        73 ~~~~--v~L~i~   82 (88)
T d1kwaa_          73 MRGS--ITFKIV   82 (88)
T ss_dssp             CCEE--EEEEEE
T ss_pred             CCCc--EEEEEE
Confidence            8866  999885

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-15  Score=119.17  Aligned_cols=89  Identities=27%  Similarity=0.384  Sum_probs=73.6

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~-~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      +..+.|.|..      ..+|||+|.||.+.   ..++||..|.++|+|++ +|+|++||+|++|||+++.+++|+||+++
T Consensus         9 ~~~v~l~~~~------~g~lG~~l~gg~d~---~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~l   79 (106)
T d2cs5a1           9 LVLIRMKPDE------NGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLF   79 (106)
T ss_dssp             CEEEEECCCS------SSCCSEEEEEEGGG---TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHH
T ss_pred             EEEEEEEeCC------CCCccEEEEeeecC---CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4456677765      36899999999864   35799999999999998 58899999999999999999999999999


Q ss_pred             HHhcCC--CCcEEEEEEeCCC
Q psy4487         175 IAESRQ--EPQVELIVSRRIQ  193 (315)
Q Consensus       175 Lk~s~~--~~~V~LvV~R~~~  193 (315)
                      |+++..  ...|.|+|++...
T Consensus        80 l~~~~~~~~~~v~L~vrp~~~  100 (106)
T d2cs5a1          80 IKASCERHSGELMLLVRPNAV  100 (106)
T ss_dssp             HHHHHHCCSSCEEEEEECCCC
T ss_pred             HHhCCCCCCcEEEEEECCCCC
Confidence            987643  2248888877653

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=4.4e-15  Score=120.81  Aligned_cols=80  Identities=18%  Similarity=0.338  Sum_probs=69.6

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC--CCcEEEEEEe
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ--EPQVELIVSR  190 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~--~~~V~LvV~R  190 (315)
                      .+|||.|.||++...  .++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++|+++..  ...|+|+|.|
T Consensus        28 ~~lG~~i~gg~d~~~--~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r  105 (118)
T d1v6ba_          28 GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV  105 (118)
T ss_dssp             SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             CCCCEEEEeeecCCC--CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEe
Confidence            589999999987543  479999999999999999999999999999999999999999999997621  2349999998


Q ss_pred             CCCC
Q psy4487         191 RIQP  194 (315)
Q Consensus       191 ~~~~  194 (315)
                      ....
T Consensus       106 ~pp~  109 (118)
T d1v6ba_         106 CPPK  109 (118)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            6543

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-15  Score=121.65  Aligned_cols=86  Identities=26%  Similarity=0.347  Sum_probs=75.0

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.|..      ..+|||.|.||.+.  ...++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++|++
T Consensus        18 ~V~l~k~~------~~~lGi~i~~~~~~--~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~   89 (117)
T d1v62a_          18 MVEIVKTP------GSALGISLTTTSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS   89 (117)
T ss_dssp             EEEEECCT------TCCCCCEEEEECCS--SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS
T ss_pred             EEEEEcCC------CCCcCEEEEeeccC--CCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHc
Confidence            36777764      35899999998753  45789999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEeCCC
Q psy4487         178 SRQEPQVELIVSRRIQ  193 (315)
Q Consensus       178 s~~~~~V~LvV~R~~~  193 (315)
                      +...  |+|+|.+...
T Consensus        90 ~~~~--v~l~v~~~~~  103 (117)
T d1v62a_          90 ISEK--VRLEILPVPQ  103 (117)
T ss_dssp             CSSE--EEEEECCBTT
T ss_pred             CCCc--EEEEEEECCC
Confidence            8766  9999877553

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-15  Score=118.33  Aligned_cols=79  Identities=29%  Similarity=0.453  Sum_probs=67.6

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcC---CCCcEEEEE
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESR---QEPQVELIV  188 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~---~~~~V~LvV  188 (315)
                      ..+|||+|.||.+.  +..++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++|+++.   ....++|+|
T Consensus        16 ~~~lG~~i~gg~~~--~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v   93 (103)
T d1ufxa_          16 AATLGIAIEGGANT--RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLV   93 (103)
T ss_dssp             SSSCCEEEECBTTS--SCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             CCccCEEEeeecCC--CCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEE
Confidence            36899999999864  3457999999999999999999999999999999999999999999999863   223477877


Q ss_pred             EeCC
Q psy4487         189 SRRI  192 (315)
Q Consensus       189 ~R~~  192 (315)
                      .+..
T Consensus        94 ~~~~   97 (103)
T d1ufxa_          94 TEFN   97 (103)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            6543

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.3e-15  Score=119.12  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=72.3

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..+.|.|..     ...+|||.|.||++..   .++||..|.++++|++.| |++||+|++|||+++.+++|++|+++
T Consensus         8 ~~~~v~l~r~~-----~~~glG~~i~gg~~~~---~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~l   78 (101)
T d1ueza_           8 EVRLVSLRRAK-----AHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKA   78 (101)
T ss_dssp             CCEEECCCCCC-----TTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHH
T ss_pred             CEEEEEEEECC-----CCCeeCEEEEecccCC---CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHH
Confidence            46677788764     2468999999998753   479999999999999988 99999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCC
Q psy4487         175 IAESRQEPQVELIVSRRI  192 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~  192 (315)
                      |+.++.   +.|+|.|..
T Consensus        79 l~~~~~---~~l~V~~~~   93 (101)
T d1ueza_          79 LKGSKK---LVLSVYSAG   93 (101)
T ss_dssp             SSSSSS---CCEEECCCC
T ss_pred             HhcCCC---EEEEEEECC
Confidence            998753   556665544

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2e-15  Score=119.86  Aligned_cols=77  Identities=22%  Similarity=0.387  Sum_probs=69.0

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      ..+|||+|.||++.   ..++||..|.++++|++ +.|++||+|++|||+++.+++|+||+++|++++..  |+|+|+|.
T Consensus        14 ~~g~Gf~i~gg~d~---~~~v~V~~v~~g~~a~~-~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~--v~L~v~R~   87 (103)
T d1wf7a_          14 PAPWGFRLQGGKDF---NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS--LNMTLQRA   87 (103)
T ss_dssp             SSCCSCCEEEETTT---TEEEEECCCCTTCHHHH-TTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE--EEEEECCC
T ss_pred             CCCccEEEEcccCC---CCCEEEEecCCCChHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEEC
Confidence            46899999999875   35899999999999995 67999999999999999999999999999998765  99999987


Q ss_pred             CCC
Q psy4487         192 IQP  194 (315)
Q Consensus       192 ~~~  194 (315)
                      ...
T Consensus        88 ~~~   90 (103)
T d1wf7a_          88 SAA   90 (103)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            644

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-15  Score=120.62  Aligned_cols=82  Identities=29%  Similarity=0.471  Sum_probs=72.1

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ..+++|.|..       .+|||+|.||.+     .|+||..|.++|+|++.+ |++||+|++|||+++.+++|+||+.+|
T Consensus        20 ~r~v~l~k~~-------~glG~~i~gg~~-----~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l   86 (117)
T d1uita_          20 PRHVKVQKGS-------EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLII   86 (117)
T ss_dssp             CEEEEEECSS-------CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHT
T ss_pred             CEEEEEEeCC-------CccCEEEEccCC-----CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHH
Confidence            4677888753       589999999874     489999999999999866 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEEeCC
Q psy4487         176 AESRQEPQVELIVSRRI  192 (315)
Q Consensus       176 k~s~~~~~V~LvV~R~~  192 (315)
                      +.+...  |+|+|.|..
T Consensus        87 ~~~~~~--v~l~v~~~p  101 (117)
T d1uita_          87 GQQCDT--ITILAQYNP  101 (117)
T ss_dssp             TSCCSE--EEEEECCCS
T ss_pred             HCCCCe--EEEEEEECC
Confidence            988755  999987754

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=8.8e-15  Score=115.63  Aligned_cols=83  Identities=27%  Similarity=0.446  Sum_probs=73.2

Q ss_pred             ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487          93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE  172 (315)
Q Consensus        93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav  172 (315)
                      ...+..+.|+|..      +.+|||.|.++.      .++||.+|.+||+|+++|.|++||+|++|||+++.+++|+||+
T Consensus        16 ~~~i~~V~l~k~~------~~~lG~~v~~~~------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~   83 (100)
T d1va8a1          16 GETVKIVRIEKAR------DIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVF   83 (100)
T ss_dssp             TEECEEEEEEECT------TCCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CceEEEEEEEeCC------CCCccEEEEecC------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHH
Confidence            4566778888875      468999998753      3799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEEE
Q psy4487         173 DIIAESRQEPQVELIVS  189 (315)
Q Consensus       173 ~iLk~s~~~~~V~LvV~  189 (315)
                      ++|+++.+.  |+|+|.
T Consensus        84 ~ll~~~~~~--v~L~v~   98 (100)
T d1va8a1          84 DLLSDMHGT--LTFVLI   98 (100)
T ss_dssp             HHHHHCCEE--EEEEEE
T ss_pred             HHHHcCCCe--EEEEEE
Confidence            999999865  888874

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.2e-15  Score=112.62  Aligned_cols=75  Identities=24%  Similarity=0.375  Sum_probs=66.8

Q ss_pred             EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487          96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII  175 (315)
Q Consensus        96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL  175 (315)
                      ...++|.|+.      ..+|||+|.||          +|..|.+||+|+++| |++||+|++|||+++.+++|+||+++|
T Consensus         5 pr~V~l~k~~------~g~~Gf~i~~g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll   67 (82)
T d1r6ja_           5 PRTITMHKDS------TGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADIL   67 (82)
T ss_dssp             CEEEEEECCT------TSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCC------CCCcCEEEEEE----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHH
Confidence            4567888875      24799999976          499999999999998 999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEEE
Q psy4487         176 AESRQEPQVELIVS  189 (315)
Q Consensus       176 k~s~~~~~V~LvV~  189 (315)
                      ++++..  |+|+|.
T Consensus        68 ~~~~~~--v~l~v~   79 (82)
T d1r6ja_          68 STSGTV--VTITIM   79 (82)
T ss_dssp             HHSCSE--EEEEEE
T ss_pred             HcCCCE--EEEEEE
Confidence            999866  999874

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.1e-15  Score=121.56  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=70.0

Q ss_pred             CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487         112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR  191 (315)
Q Consensus       112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~  191 (315)
                      +.+|||+|.||.+.   ..++||+.|.++++|+. +.|++||+|++|||+++.+++|+||+++|+.+...  |+|+|.|.
T Consensus        14 ~~~~Gf~l~gg~d~---~~~i~V~~v~~g~~A~~-~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~--v~l~V~R~   87 (103)
T d1v5la_          14 PAPWGFRLSGGIDF---NQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQ--LCLKIDRA   87 (103)
T ss_dssp             SSCCSBCCEEETTT---TEEEECSCBCTTSTTGG-GTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE--EECEECCC
T ss_pred             CCCCCEEEEeecCC---CCCEEEEEccCCChHHh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE--EEEEEEEC
Confidence            46899999999875   35899999999999995 55999999999999999999999999999998765  99999997


Q ss_pred             CCCCC
Q psy4487         192 IQPKY  196 (315)
Q Consensus       192 ~~~~p  196 (315)
                      ....+
T Consensus        88 ~~~~~   92 (103)
T d1v5la_          88 ETRLW   92 (103)
T ss_dssp             TTTTS
T ss_pred             CcccC
Confidence            75543

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9e-15  Score=115.85  Aligned_cols=83  Identities=25%  Similarity=0.420  Sum_probs=70.0

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      .++.+.+..      +.||||+|.||.+.   ..|+||..|.++|+|+++| |++||+|++|||+++.+++|++|+++|+
T Consensus        10 ~~v~i~~~~------~~glG~~i~~g~~~---~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk   79 (101)
T d1x5na1          10 KKVFISLVG------SRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK   79 (101)
T ss_dssp             EEEEECCCS------SCCCCEEEEECCSS---SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHH
T ss_pred             EEEEEEeeC------CCcccEEEeccCCC---CCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHh
Confidence            455666643      57899999999864   3589999999999999866 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEeCC
Q psy4487         177 ESRQEPQVELIVSRRI  192 (315)
Q Consensus       177 ~s~~~~~V~LvV~R~~  192 (315)
                      .+. .  +.|+|.+..
T Consensus        80 ~~~-~--~~l~v~~~~   92 (101)
T d1x5na1          80 SSR-S--LTISIVAAA   92 (101)
T ss_dssp             HCS-S--EEEEECSST
T ss_pred             CCC-C--EEEEEEECC
Confidence            875 3  777776644

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.5e-14  Score=118.88  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+.++.|.+..       .||||.|.++.      .+++|..|.++|+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus        27 ~~~~v~l~~g~-------~GlG~~i~~~~------~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~l   93 (126)
T d1wifa_          27 KVIQTKLTVGN-------LGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL   93 (126)
T ss_dssp             CEEEEEEECCT-------TCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHH
T ss_pred             cEEEEEEeeCC-------CcEEEEEEecC------CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHH
Confidence            36677787764       68999998753      379999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEEEeCCCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQPKY  196 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~~p  196 (315)
                      |+.+.....|.|+|.|...+.|
T Consensus        94 lr~~~~g~~v~L~v~R~~~~~p  115 (126)
T d1wifa_          94 LQNITIGTVLQIKAYRGFLEIP  115 (126)
T ss_dssp             HTSCCSSCEEEEEEESSSSCCC
T ss_pred             HhCCCCCCEEEEEEEeCCCCCC
Confidence            9987643459999999876553

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=110.12  Aligned_cols=73  Identities=23%  Similarity=0.436  Sum_probs=63.6

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .++|+|..     ...+|||++.||          +|.+|.|||+|++. +|++||+|++|||+++.+++|+||+++|++
T Consensus         3 tv~l~r~~-----~~~~lGf~i~~g----------~V~~V~~gs~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~ll~~   66 (79)
T d1y7na1           3 TVLIRRPD-----LRYQLGFSVQNG----------IICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVHILSN   66 (79)
T ss_dssp             EEEEEESS-----TTSCCCEEEETT----------EEEEECTTSHHHHH-TCCSSCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEcCC-----CCCCcCEEEECC----------EEEEEcCCCHHHHC-CCCCCCEEEEECCEEeCCCCHHHHHHHHHc
Confidence            45667642     357999999986          59999999999985 599999999999999999999999999999


Q ss_pred             cCCCCcEEEEE
Q psy4487         178 SRQEPQVELIV  188 (315)
Q Consensus       178 s~~~~~V~LvV  188 (315)
                      +.+.  |+|.|
T Consensus        67 ~~~~--v~l~v   75 (79)
T d1y7na1          67 AVGE--IHMKT   75 (79)
T ss_dssp             CCEE--EEEEE
T ss_pred             CCCE--EEEEE
Confidence            8866  88876

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-14  Score=109.19  Aligned_cols=80  Identities=26%  Similarity=0.456  Sum_probs=69.5

Q ss_pred             EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487          97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA  176 (315)
Q Consensus        97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk  176 (315)
                      .+++|.|..      ..+|||.+.++.      .|+||..|.+||+|+++| |++||+|++|||+++.++++++++++|+
T Consensus         4 r~v~l~k~~------~~~lG~~l~~~~------~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk   70 (85)
T d1w9ea1           4 REVILCKDQ------DGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLK   70 (85)
T ss_dssp             EEEEEECCT------TSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCC------CCCEeEEEEeCC------CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHh
Confidence            357788865      468999998763      389999999999999987 9999999999999999999999999999


Q ss_pred             hcCCCCcEEEEEEe
Q psy4487         177 ESRQEPQVELIVSR  190 (315)
Q Consensus       177 ~s~~~~~V~LvV~R  190 (315)
                      ++.+. .|.|+|++
T Consensus        71 ~~~~~-~v~l~v~~   83 (85)
T d1w9ea1          71 QAFGE-KITMTIRD   83 (85)
T ss_dssp             HCCSS-EEEEEEEC
T ss_pred             cCCCC-EEEEEEeC
Confidence            87653 48888864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.5e-14  Score=109.53  Aligned_cols=89  Identities=19%  Similarity=0.321  Sum_probs=70.0

Q ss_pred             CCceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487          91 DGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD  170 (315)
Q Consensus        91 ~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e  170 (315)
                      .++..+.+++|.|..       .||||+|.||.+      +.+|..+   .+|+..+.|++||+|++|||+++.+++|+|
T Consensus         6 ~~~~e~~~v~l~k~~-------~glGf~i~g~~~------~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~e   69 (96)
T d1ujva_           6 SGQAELMTLTIVKGA-------QGFGFTIADSPT------GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTE   69 (96)
T ss_dssp             CCCCCCEEEEEECCS-------SSSSEEEEEETT------EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHH
T ss_pred             CCCceEEEEEEEeCC-------CcccEEEEeeCC------CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHH
Confidence            345557788888864       689999999864      2333333   346667789999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487         171 VEDIIAESRQEPQVELIVSRRIQPK  195 (315)
Q Consensus       171 av~iLk~s~~~~~V~LvV~R~~~~~  195 (315)
                      |+++|+++.....|+|+|+|...+.
T Consensus        70 vv~~lk~~~~g~~v~l~v~R~~~Ps   94 (96)
T d1ujva_          70 VVDILKDCPIGSETSLIIHRGSGPS   94 (96)
T ss_dssp             HHHHHHHSCTTSEEEEEEECCSSCS
T ss_pred             HHHHHHcCCCCCEEEEEEEECCCCC
Confidence            9999999865456999999976543

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.3e-14  Score=116.64  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=67.5

Q ss_pred             EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487          98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE  177 (315)
Q Consensus        98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~  177 (315)
                      .+.|.|..       .||||+|.|+.       ++||..|.++|+|+++| |++||+|++|||+++.+++|+||+++|++
T Consensus        18 ~v~l~k~~-------~g~Gf~i~g~~-------~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~   82 (111)
T d1vaea_          18 GIHFTVEE-------GDLGFTLRGNT-------PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKS   82 (111)
T ss_dssp             CCCEECCS-------SCCSCCEESSS-------SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEECC-------CccCEEEECCc-------cEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHc
Confidence            45677653       58999999863       68999999999999988 99999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEeCC
Q psy4487         178 SRQEPQVELIVSRRI  192 (315)
Q Consensus       178 s~~~~~V~LvV~R~~  192 (315)
                      +... .|+|.|.+..
T Consensus        83 ~~~~-~v~l~v~~~~   96 (111)
T d1vaea_          83 FGGE-EVEMKVVSLL   96 (111)
T ss_dssp             TTTS-EECEEEECEE
T ss_pred             CCCC-eEEEEEECCC
Confidence            8653 3888776543

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.2e-14  Score=113.73  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487          95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI  174 (315)
Q Consensus        95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i  174 (315)
                      .+..|.|.|..     +..+|||+|.||.+.+ ...|+||..|.+||+|+++|+|++||+|++|||+++.  ++.+++.+
T Consensus        19 e~~~V~l~k~~-----~~~~lG~~i~~~~~~~-~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~   90 (124)
T d1wh1a_          19 ELEEVDLYRMN-----SQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVAL   90 (124)
T ss_dssp             EECCBCCCCSS-----TTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHH
T ss_pred             eeEEEEEEECC-----CCCcccEEEEecCCCC-CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHH
Confidence            45566777642     2468999999988643 4578999999999999999999999999999999996  57888888


Q ss_pred             HHhcCCCCcEEEEEEeCCCC
Q psy4487         175 IAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       175 Lk~s~~~~~V~LvV~R~~~~  194 (315)
                      ++.+... .|.|+|.|....
T Consensus        91 l~~~~~~-~v~l~v~r~~~~  109 (124)
T d1wh1a_          91 LTSEENK-NFSLLIARPELQ  109 (124)
T ss_dssp             HTCSSCC-SCCEEEEECSSC
T ss_pred             HhhCCCC-cEEEEEEeCCCc
Confidence            8876542 489999886644

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.27  E-value=7.7e-12  Score=96.67  Aligned_cols=75  Identities=23%  Similarity=0.415  Sum_probs=64.5

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|+|+.+......   ..+++|..|.++|||+++| |++||+|++|||+++.++++++++++|+...+. +|+|.|.|..
T Consensus         5 ~GiGi~i~~~~~~---~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~-~v~l~i~R~g   79 (92)
T d1fc6a3           5 TGVGLEITYDGGS---GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADS-QVEVVLHAPG   79 (92)
T ss_dssp             BBCSEEEEECTTC---SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTC-EEEEEEEETT
T ss_pred             EEEEEEEEEcCCC---CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCC-EEEEEEEECC
Confidence            6899998754322   3479999999999999988 999999999999999999999999999865553 5999999965

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=2.4e-09  Score=81.37  Aligned_cols=73  Identities=25%  Similarity=0.289  Sum_probs=61.0

Q ss_pred             CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .+||+.+.....    ..|++|..|.++|||+++| |+.||.|++|||+.+.  +..++...++.......|.|.|.|..
T Consensus         3 ~~LGv~~~~~~~----~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~--~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           3 ASLGVQVTNDKD----TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             EECCEEEECCC-----CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CEEeEEEEecCC----CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCC--cHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            579999986543    3689999999999999988 9999999999999996  67888888877654456999998854

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.2e-09  Score=84.62  Aligned_cols=47  Identities=45%  Similarity=0.896  Sum_probs=44.5

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      |+|+|+|.|++.                   ..+|.|+|++|+||++++.++.+|||||++|+|++
T Consensus         1 G~l~l~l~y~~~-------------------~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~   47 (125)
T d2bwqa1           1 GQLSIKLWFDKV-------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR   47 (125)
T ss_dssp             CEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSC
T ss_pred             CEEEEEEEEECC-------------------CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCC
Confidence            789999999999                   88999999999999999999999999999999974

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=4.7e-09  Score=85.19  Aligned_cols=47  Identities=26%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+|+|+|++.                   +.+|.|+|++|+||++++.++.+|||||++|+|+
T Consensus         1 rG~l~~sl~Y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~   47 (138)
T d1w15a_           1 RGELLVSLCYQST-------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHA   47 (138)
T ss_dssp             CCEEEEEEEEETT-------------------TTEEEEEEEEEESCC------CCCEEEEEEEEET
T ss_pred             CcEEEEEEEEcCC-------------------CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCC
Confidence            5999999999999                   8899999999999999999999999999999986

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=7.9e-09  Score=83.06  Aligned_cols=47  Identities=23%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|+++|+|++.                   ..+|.|+|++|+||++++.++.+|||||++|+|+
T Consensus         1 rG~l~l~l~Y~~~-------------------~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~   47 (137)
T d2cm5a1           1 RGKILVSLMYSTQ-------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD   47 (137)
T ss_dssp             CCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC
T ss_pred             CcEEEEEEEEECC-------------------CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcC
Confidence            5999999999999                   8899999999999999999999999999999986

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.1e-08  Score=82.71  Aligned_cols=47  Identities=40%  Similarity=0.767  Sum_probs=42.9

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      ..|+|+++|.|+.+                     +|.|+|++|+||++++..+.+|||||++|+|++
T Consensus         5 ~~G~l~lsl~y~~~---------------------~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~   51 (142)
T d1rh8a_           5 ITGEIQLQINYDLG---------------------NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGR   51 (142)
T ss_dssp             CCCEEEEEEEEETT---------------------EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSS
T ss_pred             cceEEEEEEEEeCC---------------------EEEEEEEEeECCCCcCCCCCCCcCEEEEEecCc
Confidence            34999999999876                     899999999999999999999999999998863

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=9.9e-09  Score=82.47  Aligned_cols=47  Identities=40%  Similarity=0.603  Sum_probs=44.7

Q ss_pred             ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      |+|+|+|.|++.                   ..+|.|+|++|+||++++..+.+|||||++|+|++
T Consensus         5 G~l~~sl~y~~~-------------------~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~   51 (130)
T d1dqva1           5 GRISFALRYLYG-------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR   51 (130)
T ss_dssp             CEEEEEEECCSS-------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST
T ss_pred             EEEEEEEEEECC-------------------CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC
Confidence            999999999999                   88999999999999999999999999999999873

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=9.4e-09  Score=78.18  Aligned_cols=61  Identities=23%  Similarity=0.451  Sum_probs=53.9

Q ss_pred             CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       128 g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ...|++|..|.++|||+++| |++||.|++|||+.+.  +++++.+++++.+..  |.|.|.|...
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~--v~l~v~R~~~   83 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSV--LALNIQRGDS   83 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSC--CCEEEESSSC
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCE--EEEEEEECCE
Confidence            34689999999999999887 9999999999999995  889999999887755  9999998753

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1.7e-08  Score=82.23  Aligned_cols=50  Identities=32%  Similarity=0.493  Sum_probs=45.9

Q ss_pred             cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487         247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR  315 (315)
Q Consensus       247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~  315 (315)
                      ...|+|+|+|.|+..                   ..+|.|+|++|+||++++.++.+|||||++|+|+.
T Consensus        18 ~~~G~l~~sl~y~~~-------------------~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~   67 (143)
T d1rsya_          18 EKLGKLQYSLDYDFQ-------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK   67 (143)
T ss_dssp             CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC
T ss_pred             hcceEEEEEEEEeCC-------------------CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC
Confidence            345999999999999                   88999999999999999999999999999999863

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.2e-08  Score=81.26  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCC-CCCCeEEEeecCCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQ-PRCPYAKIYLLPDR  315 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~-~~~pyvk~~llpd~  315 (315)
                      -.|+|+++|.|+..                   +.+|.|+|++|+||++++..+ .+|||||++|+|++
T Consensus         7 ~~G~l~~sl~Y~~~-------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~   56 (138)
T d1ugka_           7 GLGTLFFSLEYNFE-------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK   56 (138)
T ss_dssp             CCCEEEEEEEEEGG-------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT
T ss_pred             CCEEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCC
Confidence            35999999999999                   889999999999999987654 58999999999974

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=2.6e-08  Score=82.59  Aligned_cols=51  Identities=24%  Similarity=0.219  Sum_probs=46.9

Q ss_pred             cCcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       245 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      .....|+|+|+|.|++.                   +.+|.|+|++|++|++++.++.+|||||++|+|+
T Consensus         7 ~~~~~G~l~~sl~Y~~~-------------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~   57 (157)
T d1uowa_           7 ILEKLGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN   57 (157)
T ss_dssp             GGGCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET
T ss_pred             CceeeeEEEEEEEEcCC-------------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecC
Confidence            34557999999999999                   8899999999999999999999999999999986

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.7e-08  Score=80.22  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..|+|+|+|+|++.                   +.+|.|+|++|+||++++.++.+|||||++|+|+
T Consensus         5 ~~G~l~~sl~Y~~~-------------------~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~   52 (145)
T d1dqva2           5 DLGELNFSLCYLPT-------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE   52 (145)
T ss_dssp             CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTT
T ss_pred             cceEEEEEEEEcCC-------------------CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccC
Confidence            35999999999998                   8899999999999999998999999999999986

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=7.7e-08  Score=77.09  Aligned_cols=45  Identities=36%  Similarity=0.538  Sum_probs=41.6

Q ss_pred             cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      +|+|++++.|...                     +|.|+|++|+||++++.++.+|||||++|+|+
T Consensus         3 rG~i~l~~~~~~~---------------------~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~   47 (132)
T d1a25a_           3 RGRIYIQAHIDRE---------------------VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD   47 (132)
T ss_dssp             TCEEEEEEEESSS---------------------EEEEEEEEEESCCCCSTTSCCCEEEEEEEESC
T ss_pred             ccEEEEEEEecCC---------------------EEEEEEEeeeCCCCCCCCCCcCeEEEEEEccC
Confidence            5899999998766                     89999999999999999999999999999886

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.2e-07  Score=71.40  Aligned_cols=59  Identities=25%  Similarity=0.464  Sum_probs=51.3

Q ss_pred             CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ..|++|..|.++|||+++| |++||.|++|||+.+.  +.+++.++++ .+..  +.|.|.|...
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~--v~l~v~R~g~   88 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQ--LAVQIRRGRE   88 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHT-TCSS--EEEEEEETTE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcC--CHHHHHHHhc-CCCE--EEEEEEECCE
Confidence            4689999999999999887 9999999999999995  7889999985 3433  9999999863

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.43  E-value=1.9e-07  Score=72.89  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|++|..|.+++||+. + |++||.|++|||+.+.  ++.++..+|+.......|.|.|.|..
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            4899999999999984 6 9999999999999995  89999999987653345999998764

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=3e-07  Score=70.45  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             CeEEEeecCC--------ChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         131 GAIIEKVKKG--------SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       131 gi~Is~V~pG--------gpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      ++.|.+|.+|        |||+++|.+++||+|++|||+++.+  +.+++++|+...+. +|.|.|.|.-.
T Consensus        13 ~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~--~~~~~~~l~g~~G~-~V~L~i~R~g~   80 (91)
T d1k32a1          13 HYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGA--GSNIYRVLSEKAGT-SARIRLSGKGG   80 (91)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBT--TBCHHHHHHTTTTS-EEEEEEECSSS
T ss_pred             eEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecC--cceeEEEEecCCCC-EEEEEEEeCCC
Confidence            6889999998        9999988448999999999999974  56899999887664 69999999653

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=9.1e-08  Score=73.30  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=52.1

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ  193 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~  193 (315)
                      .|++|..|.++|||+++| |+.||.|++|||+++.  +.+++.++|........+.|.|.|+..
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            589999999999999877 9999999999999995  677888888776443459999998753

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.8e-07  Score=72.27  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=48.3

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP  194 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~  194 (315)
                      .|++|..|.++|||+++| |++||.|++|||+.+.  +..++..+|.+......+.|.|.|+...
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCC--CSHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecc--cHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            489999999999999887 9999999999999996  5678888887765445699999887643

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.22  E-value=9.3e-07  Score=66.89  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=52.7

Q ss_pred             CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487         130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI  192 (315)
Q Consensus       130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~  192 (315)
                      .|+.|..+.++++|+++| |+.||.|++|||+++.  +.+++..++........+.|.|.|+.
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g   78 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECC
Confidence            588999999999999877 9999999999999995  78889999988655556999999975

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1e-06  Score=71.17  Aligned_cols=45  Identities=13%  Similarity=0.003  Sum_probs=39.8

Q ss_pred             ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487         248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD  314 (315)
Q Consensus       248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd  314 (315)
                      ..|+|+|+|.|+..                   ..+|.|+|++|++|+.   .+.+|||||++|+|+
T Consensus        11 ~~~~l~~sl~y~~~-------------------~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~   55 (138)
T d1wfma_          11 QAPKLHYCLDYDCQ-------------------KAELFVTRLEAVTSNH---DGGCDCYVQGSVANR   55 (138)
T ss_dssp             SCCEEEEEEEEETT-------------------TTEEEEEEEEEECCCC---SSCCCEEEEEEEEET
T ss_pred             cCCEEEEEEEECCC-------------------CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCC
Confidence            34899999999999                   8899999999999953   456899999999986