Psyllid ID: psy4514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ
Secondary Structure (PSIPRED)
ccccccccEEEEEEEcccccEEEEEcccccccccEEEEEEccccccccHHHEEEEEccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHEEEEEcccccEEEEEcccccccccEEEEEEcccccccccHHEEEEEcccccccc
Coil and Loop (DISEMBL)
msvdlgseWMKVAIVSPGVPMEIAlnkeskrktptlvafhkgnsgtdicdkligcwtpvitqgq
Flexible Loop (DISEMBL)
msvdlgsewMKVAIVSPGVPMEIALNkeskrktpTLVAFhkgnsgtdicdkLIGCWTPVITQGQ
Low Complexity Region (SEG)
MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ
Disordered region (IsUnstruct)
********WMKVAIVSPGVPMEIAL********PTLVAFHKGNSGTDICDKLIGCWTPVI****
Disordered Region (DISOPRED)
MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPV*****
Disordered Region (DISEMBL)
MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ
Disordered Region (DISPRO)
*SVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q0VA61	643	Hypoxia up-regulated prot	yes	N/A	0.640	0.063	0.731	1e-12
Q566I3	646	Hypoxia up-regulated prot	N/A	N/A	0.640	0.063	0.756	2e-12
Q7ZUW2	980	Hypoxia up-regulated prot	yes	N/A	0.640	0.041	0.780	2e-12
Q9Y4L1	999	Hypoxia up-regulated prot	yes	N/A	0.640	0.041	0.756	5e-11
Q5ZLK7	1002	Hypoxia up-regulated prot	yes	N/A	0.640	0.040	0.731	5e-11
Q63617	999	Hypoxia up-regulated prot	yes	N/A	0.640	0.041	0.756	9e-11
Q9JKR6	999	Hypoxia up-regulated prot	yes	N/A	0.640	0.041	0.756	9e-11
Q60432	999	Hypoxia up-regulated prot	yes	N/A	0.640	0.041	0.756	1e-10
Q10061	848	Heat shock protein 70 hom	yes	N/A	0.656	0.049	0.488	3e-07
F4JMJ1	867	Heat shock 70 kDa protein	yes	N/A	0.734	0.054	0.491	4e-07

>sp|Q0VA61|HYOU1_XENTR Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis GN=hyou1 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVD+GSEWMK+AIV PGVPMEI LNKES+RKTP  +A  +
Sbjct: 26 MSVDMGSEWMKIAIVKPGVPMEIVLNKESRRKTPVAIALKE 66

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.
Xenopus tropicalis (taxid: 8364)

>sp|Q566I3|HYOU1_XENLA Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus laevis GN=hyou1 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/41 (75%), Positives = 35/41 (85%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSEW+KVAIV PGVPMEI LNKES+RKTP  +A  +
Sbjct: 26 MSVDLGSEWVKVAIVKPGVPMEIVLNKESRRKTPAAIALKE 66

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Xenopus laevis (taxid: 8355)

>sp|Q7ZUW2|HYOU1_DANRE Hypoxia up-regulated protein 1 OS=Danio rerio GN=hyou1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 34/41 (82%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP  V   +
Sbjct: 28 MSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTPVAVCLKE 68

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Danio rerio (taxid: 7955)

>sp|Q9Y4L1|HYOU1_HUMAN Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/41 (75%), Positives = 34/41 (82%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   +
Sbjct: 36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKE 76

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Homo sapiens (taxid: 9606)

>sp|Q5ZLK7|HYOU1_CHICK Hypoxia up-regulated protein 1 OS=Gallus gallus GN=HYOU1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVD+GSE MK+AIV PGVPMEI LNKES+RKTP  VA  +
Sbjct: 27 MSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKE 67

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Gallus gallus (taxid: 9031)

>sp|Q63617|HYOU1_RAT Hypoxia up-regulated protein 1 OS=Rattus norvegicus GN=Hyou1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/41 (75%), Positives = 33/41 (80%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   +
Sbjct: 36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKE 76

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Rattus norvegicus (taxid: 10116)

>sp|Q9JKR6|HYOU1_MOUSE Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/41 (75%), Positives = 33/41 (80%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   +
Sbjct: 36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKE 76

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Mus musculus (taxid: 10090)

>sp|Q60432|HYOU1_CRIGR Hypoxia up-regulated protein 1 OS=Cricetulus griseus GN=HYOU1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/41 (75%), Positives = 33/41 (80%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   +
Sbjct: 36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKE 76

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Cricetulus griseus (taxid: 10029)

>sp|Q10061|LHS1_SCHPO Heat shock protein 70 homolog lhs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.06 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          +++D G+EW K A++ PG+P+EI L K+++RK  + VAF KGN
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAF-KGN 66

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|F4JMJ1|HSP7R_ARATH Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 10/57 (17%)

Query: 1  MSVDLGSEWMKVAIVS---PGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
          +SVDLGSEW+KVA+V+      P+ +A+N+ SKRK+P LVAF  G       D+L+G
Sbjct: 27 LSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSG-------DRLLG 76

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
403183091	925	AAEL017263-PA [Aedes aegypti]	0.734	0.050	0.722	2e-14
328711506	889	PREDICTED: hypoxia up-regulated protein	0.656	0.047	0.880	2e-14
347966682	968	AGAP001827-PA [Anopheles gambiae str. PE	0.671	0.044	0.837	3e-14
322800098	949	hypothetical protein SINV_11855 [Solenop	0.906	0.061	0.672	3e-14
307184299	917	Hypoxia up-regulated protein 1 [Camponot	0.656	0.045	0.857	3e-14
328711504	960	PREDICTED: hypoxia up-regulated protein	0.656	0.043	0.880	4e-14
332031611	952	Hypoxia up-regulated protein 1 [Acromyrm	0.906	0.060	0.672	6e-14
312380207	976	hypothetical protein AND_07786 [Anophele	0.671	0.044	0.813	8e-14
20128923	923	CG2918, isoform A [Drosophila melanogast	0.656	0.045	0.809	3e-13
195477676	921	GE16956 [Drosophila yakuba] gi|194187798	0.656	0.045	0.809	3e-13

>gi|403183091|gb|EJY57847.1| AAEL017263-PA [Aedes aegypti]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/54 (72%), Positives = 43/54 (79%), Gaps = 7/54 (12%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
          MSVDLGSEWMK+ +VSPGVPMEIALNKESKRKTPT +AF  G       D+LIG
Sbjct: 34 MSVDLGSEWMKIGVVSPGVPMEIALNKESKRKTPTTIAFRNG-------DRLIG 80

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711506|ref|XP_003244557.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          MSVD+GSEWMKVAIVSPGVPMEIALNKESKRKTPT +AF  G
Sbjct: 31 MSVDIGSEWMKVAIVSPGVPMEIALNKESKRKTPTAIAFRNG 72

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966682|ref|XP_321225.3| AGAP001827-PA [Anopheles gambiae str. PEST] gi|333469947|gb|EAA01085.3| AGAP001827-PA [Anopheles gambiae str. PEST]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          MSVDLGSEWMKV +VSPGVPMEIALNKESKRKTPT +AF  G+
Sbjct: 23 MSVDLGSEWMKVGVVSPGVPMEIALNKESKRKTPTTIAFRNGD 65

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800098|gb|EFZ21204.1| hypothetical protein SINV_11855 [Solenopsis invicta]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 44/58 (75%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTP 58
          MS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP ++AF  G        ++IG   P
Sbjct: 31 MSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPVVIAFRDGERSFGEDAQVIGVRFP 88

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184299|gb|EFN70757.1| Hypoxia up-regulated protein 1 [Camponotus floridanus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          MS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP ++AF  G
Sbjct: 31 MSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPAVIAFRDG 72

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711504|ref|XP_001946466.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          MSVD+GSEWMKVAIVSPGVPMEIALNKESKRKTPT +AF  G
Sbjct: 31 MSVDIGSEWMKVAIVSPGVPMEIALNKESKRKTPTAIAFRNG 72

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031611|gb|EGI71083.1| Hypoxia up-regulated protein 1 [Acromyrmex echinatior]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 43/58 (74%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTP 58
          MS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP  +AF  G        ++IG   P
Sbjct: 31 MSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPVTIAFRDGERSFGEDAQVIGVRFP 88

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380207|gb|EFR26271.1| hypothetical protein AND_07786 [Anopheles darlingi]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 39/43 (90%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          MSVDLGSEWMKV +VSPGVPMEIALNKESKRKTP+ +AF  G+
Sbjct: 38 MSVDLGSEWMKVGVVSPGVPMEIALNKESKRKTPSTIAFRNGD 80

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20128923|ref|NP_569995.1| CG2918, isoform A [Drosophila melanogaster] gi|281359726|ref|NP_001162645.1| CG2918, isoform B [Drosophila melanogaster] gi|2661598|emb|CAA15711.1| EG:25E8.1 [Drosophila melanogaster] gi|7290308|gb|AAF45769.1| CG2918, isoform A [Drosophila melanogaster] gi|20151397|gb|AAM11058.1| GH11566p [Drosophila melanogaster] gi|220947160|gb|ACL86123.1| CG2918-PA [synthetic construct] gi|272505940|gb|ACZ95182.1| CG2918, isoform B [Drosophila melanogaster]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          MSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF  G
Sbjct: 23 MSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDG 64

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477676|ref|XP_002100274.1| GE16956 [Drosophila yakuba] gi|194187798|gb|EDX01382.1| GE16956 [Drosophila yakuba]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          MSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF  G
Sbjct: 23 MSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDG 64

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
FB|FBgn0023529	923	CG2918 [Drosophila melanogaste	0.656	0.045	0.809	7.7e-13
UNIPROTKB|J3KTF1	224	HYOU1 "Hypoxia up-regulated pr	0.578	0.165	0.837	4.5e-11
UNIPROTKB|J3QL06	211	HYOU1 "Hypoxia up-regulated pr	0.578	0.175	0.837	4.5e-11
ZFIN|ZDB-GENE-030131-5344	980	hyou1 "hypoxia up-regulated 1"	0.578	0.037	0.864	7e-11
UNIPROTKB|E9PJ21	656	HYOU1 "Hypoxia up-regulated pr	0.578	0.056	0.837	1.7e-10
UNIPROTKB|E9PL22	937	HYOU1 "Hypoxia up-regulated pr	0.578	0.039	0.837	4.5e-10
UNIPROTKB|Q9Y4L1	999	HYOU1 "Hypoxia up-regulated pr	0.578	0.037	0.837	5.3e-10
UNIPROTKB|E2RB31	996	HYOU1 "Uncharacterized protein	0.578	0.037	0.837	8.5e-10
MGI|MGI:108030	999	Hyou1 "hypoxia up-regulated 1"	0.578	0.037	0.837	8.6e-10
RGD|621146	999	Hyou1 "hypoxia up-regulated 1"	0.578	0.037	0.837	1.1e-09

FB|FBgn0023529 CG2918 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
             MSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF  G
Sbjct:    23 MSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDG 64

GO:0006457 "protein folding" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|J3KTF1 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIV 72

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J3QL06 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIV 72

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5344 hyou1 "hypoxia up-regulated 1" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP  V
Sbjct:    28 MSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTPVAV 64

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

UNIPROTKB|E9PJ21 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIV 72

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PL22 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIV 72

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9Y4L1 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIV 72

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006950 "response to stress" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

UNIPROTKB|E2RB31 HYOU1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
 Identities = 31/37 (83%), Positives = 32/37 (86%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTV 72

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:108030 Hyou1 "hypoxia up-regulated 1" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
 Identities = 31/37 (83%), Positives = 32/37 (86%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTV 72

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

RGD|621146 Hyou1 "hypoxia up-regulated 1" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 31/37 (83%), Positives = 32/37 (86%)

Query:     1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37
             MSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V
Sbjct:    36 MSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTV 72

GO:0001666 "response to hypoxia" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZUW2	HYOU1_DANRE	No assigned EC number	0.7804	0.6406	0.0418	yes	N/A
Q60432	HYOU1_CRIGR	No assigned EC number	0.7560	0.6406	0.0410	yes	N/A
Q0VA61	HYOU1_XENTR	No assigned EC number	0.7317	0.6406	0.0637	yes	N/A
Q63617	HYOU1_RAT	No assigned EC number	0.7560	0.6406	0.0410	yes	N/A
Q9JKR6	HYOU1_MOUSE	No assigned EC number	0.7560	0.6406	0.0410	yes	N/A
Q5ZLK7	HYOU1_CHICK	No assigned EC number	0.7317	0.6406	0.0409	yes	N/A
Q9Y4L1	HYOU1_HUMAN	No assigned EC number	0.7560	0.6406	0.0410	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	4e-23
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	1e-11
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	2e-05
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	8e-05
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	6e-04
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	0.003

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 88.8 bits (221), Expect = 4e-23
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
          + +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF  G
Sbjct: 1  LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGG 42

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
            +DLG+    +A+      ++I +N+ S R TP++V F   N
Sbjct: 1  FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKN 42

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          +DLG+    VA++  G   ++  N E +R TP++VAF K
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSK 48

Length = 579

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 39
          +D G+    VA+   G  +++  N+ S R+TP+LV+F
Sbjct: 5  IDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSF 40

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
          +DLG+    VA++  G P+ I  N E  R TP++V F K        D+L+G
Sbjct: 7  IDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSG------DRLVG 51

Length = 653

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK 41
          +DLG+    VA++  G P+ IA N E  R TP++V F K
Sbjct: 7  IDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTK 44

Length = 668

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG0100|consensus	663		99.92
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.82
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.81
PRK13410	668	molecular chaperone DnaK; Provisional	99.8
PRK13411	653	molecular chaperone DnaK; Provisional	99.8
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.8
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.8
PLN03184	673	chloroplast Hsp70; Provisional	99.79
CHL00094	621	dnaK heat shock protein 70	99.79
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.79
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.79
PRK05183	616	hscA chaperone protein HscA; Provisional	99.78
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.78
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.74
KOG0101|consensus	620		99.73
KOG0102|consensus	640		99.72
KOG0104|consensus	902		99.66
PRK11678	450	putative chaperone; Provisional	99.66
PRK01433	595	hscA chaperone protein HscA; Provisional	99.64
KOG0103|consensus	727		99.63
PRK13929	335	rod-share determining protein MreBH; Provisional	98.98
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	98.8
PRK13928	336	rod shape-determining protein Mbl; Provisional	98.71
PRK13930	335	rod shape-determining protein MreB; Provisional	98.56
PRK13927	334	rod shape-determining protein MreB; Provisional	98.52
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	98.31
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	98.18
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	95.25
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	94.04
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	93.92
PRK10331	470	L-fuculokinase; Provisional	93.19
PRK15027	484	xylulokinase; Provisional	93.18
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	92.92
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	92.76
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	92.29
PTZ00294	504	glycerol kinase-like protein; Provisional	92.29
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	92.24
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	92.15
PRK04123	548	ribulokinase; Provisional	92.03
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	92.02
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	91.73
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	91.66
PRK00047	498	glpK glycerol kinase; Provisional	91.56
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	91.45
PLN02295	512	glycerol kinase	91.22
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	90.6
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	90.19
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	89.88
PLN00130	213	succinate dehydrogenase (SDH3); Provisional	89.72
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	88.93
PLN02669	556	xylulokinase	88.91
PTZ00280	414	Actin-related protein 3; Provisional	88.86
PRK13321	256	pantothenate kinase; Reviewed	87.66
PRK13317	277	pantothenate kinase; Provisional	87.3
PRK13318	258	pantothenate kinase; Reviewed	87.16
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	86.14
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	85.76
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	84.37
PTZ00452	375	actin; Provisional	84.16
PTZ00281	376	actin; Provisional	84.14
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	83.98
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	83.87
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	83.63
PTZ00004	378	actin-2; Provisional	81.85
PTZ00466	380	actin-like protein; Provisional	81.67
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	81.26
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	80.94
PF01548	144	DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T	80.21

>KOG0100|consensus

Probab=99.92  E-value=3.6e-26  Score=158.46  Aligned_cols=61  Identities=28%  Similarity=0.337  Sum_probs=59.8

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      ||||||||||||+++++| .+||+.|++|+|+|||+|+|++++||+|++||+|+..||+||+
T Consensus        39 igIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTi   99 (663)
T KOG0100|consen   39 IGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTI   99 (663)
T ss_pred             EEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccce
Confidence            699999999999999999 9999999999999999999999999999999999999999997

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.82  E-value=2.8e-20  Score=133.10  Aligned_cols=62  Identities=26%  Similarity=0.284  Sum_probs=59.4

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| +++||+|++|+|+|||+|+|.+++|++|+.|++++.+||++|+.
T Consensus         7 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~   68 (653)
T PTZ00009          7 IGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVF   68 (653)
T ss_pred             EEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEh
Confidence            699999999999999999 89999999999999999999988999999999999999999874

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.81  E-value=6.3e-20  Score=131.56  Aligned_cols=62  Identities=31%  Similarity=0.335  Sum_probs=58.3

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| +++|++|++|+|+|||+|+|. +++++||+.|++++..||++|+.
T Consensus        44 iGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~  106 (663)
T PTZ00400         44 VGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVF  106 (663)
T ss_pred             EEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceeh
Confidence            699999999999999988 899999999999999999997 46999999999999999999874

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.80  E-value=8.4e-20  Score=131.18  Aligned_cols=62  Identities=26%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| .+++++|++|+|+|||+|+|. +++++||+.|++++..||++|+.
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~   67 (668)
T PRK13410          5 VGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFY   67 (668)
T ss_pred             EEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceeh
Confidence            699999999999999999 788999999999999999996 57999999999999999999874

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.80  E-value=9.8e-20  Score=130.36  Aligned_cols=62  Identities=27%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| .+++|+|++|+|+|||+|+|.+ ++++||+.|++++..||++|+.
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~   67 (653)
T PRK13411          5 IGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVY   67 (653)
T ss_pred             EEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchH
Confidence            699999999999999999 7789999999999999999964 6999999999999999999863

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.80  E-value=9.4e-20  Score=130.82  Aligned_cols=61  Identities=28%  Similarity=0.339  Sum_probs=58.6

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| ++++++|..|+|+|||+|+|.+++++||+.|++++..||++|+
T Consensus        30 iGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti   90 (657)
T PTZ00186         30 IGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTF   90 (657)
T ss_pred             EEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHH
Confidence            699999999999999998 8899999999999999999999999999999999999999986

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.80  E-value=1.1e-19  Score=129.26  Aligned_cols=61  Identities=30%  Similarity=0.353  Sum_probs=57.8

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| .+++++|++|+|+|||+|+|. ++++++|+.|++++..||++|+
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i   66 (627)
T PRK00290          5 IGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTI   66 (627)
T ss_pred             EEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhH
Confidence            699999999999999999 789999999999999999996 6899999999999999999986

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.79  E-value=1.5e-19  Score=129.93  Aligned_cols=62  Identities=29%  Similarity=0.337  Sum_probs=58.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| .+++++|++|+|+|||+|+|. ++++++|+.|++++..||++|+.
T Consensus        42 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~  104 (673)
T PLN03184         42 VGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFF  104 (673)
T ss_pred             EEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhH
Confidence            699999999999999999 789999999999999999996 46899999999999999999873

>CHL00094 dnaK heat shock protein 70

Probab=99.79  E-value=1.8e-19  Score=128.28  Aligned_cols=62  Identities=29%  Similarity=0.329  Sum_probs=58.1

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| .++|++|++|+|+|||+|+|.+ +++++|+.|++++..||++|+.
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~   67 (621)
T CHL00094          5 VGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFY   67 (621)
T ss_pred             EEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceeh
Confidence            699999999999999999 7899999999999999999964 6899999999999999999874

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.79  E-value=1.9e-19  Score=127.15  Aligned_cols=61  Identities=31%  Similarity=0.354  Sum_probs=57.4

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| .+++++|++|+|+|||+|+|.+ +++++|+.|++++..||++|+
T Consensus         3 iGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i   64 (595)
T TIGR02350         3 IGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTI   64 (595)
T ss_pred             EEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhh
Confidence            699999999999999999 7889999999999999999974 599999999999999999986

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.79  E-value=1.7e-19  Score=128.12  Aligned_cols=61  Identities=25%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| ++++++|+.|+|.|||+|+|.+ ++++||+.|++++..||++|+
T Consensus         2 iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti   63 (599)
T TIGR01991         2 VGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTI   63 (599)
T ss_pred             EEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhH
Confidence            699999999999999999 8899999999999999999974 589999999999999999986

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.78  E-value=2.4e-19  Score=127.68  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| .+++++|++|+|++||+|+|.++++++|+.|++++..||++|+
T Consensus        22 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti   82 (616)
T PRK05183         22 VGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTI   82 (616)
T ss_pred             EEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhH
Confidence            699999999999999999 7899999999999999999988889999999999999999986

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.6e-19  Score=125.93  Aligned_cols=63  Identities=29%  Similarity=0.276  Sum_probs=57.6

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-ceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-NSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||+++++..++++.|.+|+|.|||+|+|..+ ++++|+.|++++..||+||+.
T Consensus         8 iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~   71 (579)
T COG0443           8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIF   71 (579)
T ss_pred             EEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEE
Confidence            699999999999999977357999999999999999999754 699999999999999999863

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.74  E-value=2e-18  Score=120.67  Aligned_cols=62  Identities=35%  Similarity=0.392  Sum_probs=54.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||+||+||++++| .++++.|+.|+|++||+|+|.++++++|..|+.++..+|++++.
T Consensus         2 iGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~   63 (602)
T PF00012_consen    2 IGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIY   63 (602)
T ss_dssp             EEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEE
T ss_pred             EEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccc
Confidence            699999999999999998 89999999999999999999988999999999999999998863

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>KOG0101|consensus

Probab=99.73  E-value=4.2e-18  Score=121.68  Aligned_cols=61  Identities=28%  Similarity=0.379  Sum_probs=59.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      ||||||||+|||+++.++ .++++.|++|+|+|||+|+|.+.++++|.+|+.+..+||.||+
T Consensus        10 iGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv   70 (620)
T KOG0101|consen   10 IGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTV   70 (620)
T ss_pred             eeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCccee
Confidence            699999999999999988 8999999999999999999999999999999999999999985

>KOG0102|consensus

Probab=99.72  E-value=6.6e-18  Score=119.47  Aligned_cols=61  Identities=30%  Similarity=0.346  Sum_probs=57.8

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||++++.++ .+.++.|.+|.|.|||+|+|. ++++|+|..||+|+..||+||+
T Consensus        30 igidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntf   91 (640)
T KOG0102|consen   30 IGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTF   91 (640)
T ss_pred             eeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceE
Confidence            699999999999999888 678999999999999999995 6799999999999999999997

>KOG0104|consensus

Probab=99.66  E-value=4.8e-17  Score=118.11  Aligned_cols=63  Identities=56%  Similarity=0.810  Sum_probs=60.4

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      ++||||++|.+||++++|.|++|++|.+++|++|++|+|.+++|++|++|..++.++|.++.+
T Consensus        25 msVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~   87 (902)
T KOG0104|consen   25 MSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYR   87 (902)
T ss_pred             eeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999988754

>PRK11678 putative chaperone; Provisional

Probab=99.66  E-value=1.3e-16  Score=110.88  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec----------------------------------------
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH----------------------------------------   40 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~----------------------------------------   40 (64)
                      +|||||||||+||++++| +++++++++|++.+||+|+|.                                        
T Consensus         3 iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T PRK11678          3 IGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV   81 (450)
T ss_pred             EEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence            699999999999999988 789999999999999999993                                        


Q ss_pred             -CCceEEchhHHhhhhcCCCCc
Q psy4514          41 -KGNSGTDICDKLIGCWTPVIT   61 (64)
Q Consensus        41 -~~~r~vG~~Ak~~~~~nP~nt   61 (64)
                       +++.++|..|+++...+|+++
T Consensus        82 ~~~~~~~G~~A~~~~~~~p~~~  103 (450)
T PRK11678         82 TAQSVFFGLAALAQYLEDPEEV  103 (450)
T ss_pred             cccccchhHHHHHhhccCCCCc
Confidence             456789999999999999887

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.64  E-value=3.1e-16  Score=111.72  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhH
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICD   50 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~A   50 (64)
                      |||||||||||||++.+| +++|++|++|+|+|||+|+|.++++++|+.|
T Consensus        22 iGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A   70 (595)
T PRK01433         22 VGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK   70 (595)
T ss_pred             EEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh
Confidence            699999999999999888 8999999999999999999988889999886

>KOG0103|consensus

Probab=99.63  E-value=2e-16  Score=113.87  Aligned_cols=63  Identities=27%  Similarity=0.318  Sum_probs=61.1

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccCC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ   64 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~~   64 (64)
                      +|||||..||.+|+.+.+ .+|+|.|+.|+|.||++|+|..+.|++|.+|+++..+|++||+++
T Consensus         4 vG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~   66 (727)
T KOG0103|consen    4 VGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSN   66 (727)
T ss_pred             eeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchh
Confidence            599999999999999999 899999999999999999999999999999999999999999974

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.98  E-value=8.9e-10  Score=73.81  Aligned_cols=52  Identities=27%  Similarity=0.254  Sum_probs=41.1

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-c--eEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-N--SGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~--r~vG~~Ak~~~~~nP~nt~   62 (64)
                      +||||||+|+++  +.++++  ++.|+      ||+|+|+.+ .  ..||+.|+++..++|.++.
T Consensus         7 ~giDlGt~~~~i--~~~~~~--~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~   61 (335)
T PRK13929          7 IGIDLGTANILV--YSKNKG--IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIV   61 (335)
T ss_pred             EEEEcccccEEE--EECCCc--EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEE
Confidence            699999999985  556633  46663      999999743 2  4799999999999998764

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=98.80  E-value=1.3e-08  Score=67.85  Aligned_cols=50  Identities=22%  Similarity=0.231  Sum_probs=38.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-----c--eEEchhHHhhhhcCCCC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----N--SGTDICDKLIGCWTPVI   60 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-----~--r~vG~~Ak~~~~~nP~n   60 (64)
                      |||||||+|++++....|   .++       ..||+|+|.++     .  .++|+.|++++...|.+
T Consensus         5 ~giDlGt~~s~i~~~~~~---~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~   61 (333)
T TIGR00904         5 IGIDLGTANTLVYVKGRG---IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGN   61 (333)
T ss_pred             eEEecCcceEEEEECCCC---EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCC
Confidence            699999999999885433   243       27999999732     3  56999999987666654

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=98.71  E-value=3.4e-08  Score=65.98  Aligned_cols=51  Identities=22%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-C-ce-EEchhHHhhhhcCCCCc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G-NS-GTDICDKLIGCWTPVIT   61 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~-~r-~vG~~Ak~~~~~nP~nt   61 (64)
                      +||||||+|++++....+   .++.       +||+|+|.. + .. .+|+.|++++...|.+.
T Consensus         6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~   59 (336)
T PRK13928          6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNI   59 (336)
T ss_pred             eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCE
Confidence            699999999999886333   4554       599999974 2 33 69999999987777654

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=98.56  E-value=1.8e-07  Score=61.94  Aligned_cols=50  Identities=24%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC---CceEEchhHHhhhhcCCCC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GNSGTDICDKLIGCWTPVI   60 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~---~~r~vG~~Ak~~~~~nP~n   60 (64)
                      +||||||+++++++...+   .++ +      +||+|+|.+   +..++|++|+++...+|.+
T Consensus        11 vgiDlGt~~t~i~~~~~~---~~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~   63 (335)
T PRK13930         11 IGIDLGTANTLVYVKGKG---IVL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGN   63 (335)
T ss_pred             eEEEcCCCcEEEEECCCC---EEE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCC
Confidence            699999999999986333   233 2      599999964   2458999999988766644

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=98.52  E-value=2.8e-07  Score=61.19  Aligned_cols=51  Identities=22%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-c--eEEchhHHhhhhcCCCCc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-N--SGTDICDKLIGCWTPVIT   61 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~--r~vG~~Ak~~~~~nP~nt   61 (64)
                      |||||||++++++..  |... ++       .+||+|+|... +  .++|+.|+++...+|.++
T Consensus         8 igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~   61 (334)
T PRK13927          8 LGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI   61 (334)
T ss_pred             eEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCE
Confidence            699999999998553  3232 33       27999999643 2  389999999987776553

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=98.31  E-value=1.6e-06  Score=59.06  Aligned_cols=52  Identities=27%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC--C--ce-EEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G--NS-GTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~--~--~r-~vG~~Ak~~~~~nP~nt~   62 (64)
                      +||||||.|..|.+-  + + -|++|+      ||+|++..  +  .. .+|..||++.-..|.|-.
T Consensus         9 iGIDLGTanTlV~~k--~-k-gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~   65 (342)
T COG1077           9 IGIDLGTANTLVYVK--G-K-GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV   65 (342)
T ss_pred             ceeeecccceEEEEc--C-c-eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce
Confidence            699999999998775  3 2 377776      99999965  3  22 499999999989998754

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=98.18  E-value=1.4e-06  Score=59.13  Aligned_cols=51  Identities=27%  Similarity=0.391  Sum_probs=35.7

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC--ce-EEchhHHhhhhcCCCCc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--NS-GTDICDKLIGCWTPVIT   61 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~--~r-~vG~~Ak~~~~~nP~nt   61 (64)
                      +||||||.|..|..  .+ + .++.++      ||+|+++.+  +. .+|++|+.+.-.+|.+-
T Consensus         4 igIDLGT~~t~i~~--~~-~-Giv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i   57 (326)
T PF06723_consen    4 IGIDLGTSNTRIYV--KG-K-GIVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI   57 (326)
T ss_dssp             EEEEE-SSEEEEEE--TT-T-EEEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE
T ss_pred             eEEecCcccEEEEE--CC-C-CEEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc
Confidence            69999999999755  33 2 366665      999999743  33 49999999988888763

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=95.25  E-value=0.018  Score=36.63  Aligned_cols=18  Identities=17%  Similarity=0.492  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         3 lgiDiGTts~K~~l~d~~   20 (245)
T PF00370_consen    3 LGIDIGTTSVKAVLFDED   20 (245)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEEcccceEEEEEeCC
Confidence            599999999999999854

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=94.04  E-value=0.11  Score=35.07  Aligned_cols=54  Identities=11%  Similarity=0.020  Sum_probs=34.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEE-ecCCceEEchhHHhhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVA-FHKGNSGTDICDKLIG   54 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~-f~~~~r~vG~~Ak~~~   54 (64)
                      |.||+||.++++++..+..+.-++++--++...+.... ......++|+.|+...
T Consensus         2 iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~   56 (371)
T cd00012           2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR   56 (371)
T ss_pred             EEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCC
Confidence            47999999999998765534456666555543332111 1134667999887654

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=93.92  E-value=0.059  Score=34.77  Aligned_cols=18  Identities=28%  Similarity=0.536  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||++++++++++|
T Consensus         3 lGIDiGtts~K~vl~d~g   20 (248)
T TIGR00241         3 LGIDSGSTTTKMVLMEDG   20 (248)
T ss_pred             EEEEcChhheEEEEEcCC
Confidence            599999999999999854

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PRK10331 L-fuculokinase; Provisional

Probab=93.19  E-value=0.062  Score=37.54  Aligned_cols=18  Identities=17%  Similarity=0.291  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         5 lgID~GTt~~Ka~l~d~~   22 (470)
T PRK10331          5 LVLDCGATNVRAIAVDRQ   22 (470)
T ss_pred             EEEecCCCceEEEEEcCC
Confidence            589999999999999744

>PRK15027 xylulokinase; Provisional

Probab=93.18  E-value=0.078  Score=37.18  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=16.2

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         3 lgID~GTts~Ka~l~d~~   20 (484)
T PRK15027          3 IGIDLGTSGVKVILLNEQ   20 (484)
T ss_pred             EEEEecccceEEEEEcCC
Confidence            599999999999999754

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=92.92  E-value=0.099  Score=36.54  Aligned_cols=18  Identities=11%  Similarity=0.315  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         4 lgiD~GTss~K~~l~d~~   21 (465)
T TIGR02628         4 LVLDCGATNLRAIAINRQ   21 (465)
T ss_pred             EEEecCCCcEEEEEEcCC
Confidence            589999999999999754

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=92.76  E-value=0.099  Score=36.86  Aligned_cols=18  Identities=22%  Similarity=0.451  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         3 lgiDiGtt~~K~~l~d~~   20 (505)
T TIGR01314         3 IGVDIGTTSTKAVLFEEN   20 (505)
T ss_pred             EEEeccccceEEEEEcCC
Confidence            599999999999999755

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=92.29  E-value=0.13  Score=36.76  Aligned_cols=18  Identities=22%  Similarity=0.488  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         3 lgID~GTts~Ka~l~d~~   20 (541)
T TIGR01315         3 IGVDVGTGSARACIIDST   20 (541)
T ss_pred             EEEEecCcCEEEEEEcCC
Confidence            599999999999999644

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=92.29  E-value=0.1  Score=36.79  Aligned_cols=18  Identities=22%  Similarity=0.261  Sum_probs=16.2

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         5 lgiDiGTts~Ka~l~d~~   22 (504)
T PTZ00294          5 GSIDQGTTSTRFIIFDEK   22 (504)
T ss_pred             EEEecCCCceEEEEECCC
Confidence            589999999999999764

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=92.24  E-value=0.11  Score=36.87  Aligned_cols=18  Identities=22%  Similarity=0.423  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         6 lgID~GTts~Ka~l~d~~   23 (520)
T PRK10939          6 MALDAGTGSIRAVIFDLN   23 (520)
T ss_pred             EEEecCCCceEEEEECCC
Confidence            589999999999999754

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=92.15  E-value=0.18  Score=35.78  Aligned_cols=18  Identities=17%  Similarity=0.492  Sum_probs=16.2

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||++.++.+++..
T Consensus         7 lgIDiGTt~~Kavl~d~~   24 (502)
T COG1070           7 LGIDIGTTSVKAVLFDED   24 (502)
T ss_pred             EEEEcCCCcEEEEEEeCC
Confidence            599999999999999765

>PRK04123 ribulokinase; Provisional

Probab=92.03  E-value=0.13  Score=36.55  Aligned_cols=16  Identities=19%  Similarity=0.600  Sum_probs=15.1

Q ss_pred             CeeecCCccEEEEEEc
Q psy4514           1 MSVDLGSEWMKVAIVS   16 (64)
Q Consensus         1 iGIDlGt~~s~va~~~   16 (64)
                      +|||+||+++++++++
T Consensus         6 lgiD~GTts~Ka~l~d   21 (548)
T PRK04123          6 IGLDFGTDSVRALLVD   21 (548)
T ss_pred             EEEecCCCceEEEEEE
Confidence            5899999999999998

>TIGR01311 glycerol_kin glycerol kinase

Probab=92.02  E-value=0.14  Score=35.92  Aligned_cols=18  Identities=11%  Similarity=0.346  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         4 lgiDiGtt~iKa~l~d~~   21 (493)
T TIGR01311         4 LAIDQGTTSSRAIVFDKD   21 (493)
T ss_pred             EEEecCCCceEEEEECCC
Confidence            599999999999999754

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=91.73  E-value=0.12  Score=36.70  Aligned_cols=16  Identities=25%  Similarity=0.339  Sum_probs=15.2

Q ss_pred             CeeecCCccEEEEEEc
Q psy4514           1 MSVDLGSEWMKVAIVS   16 (64)
Q Consensus         1 iGIDlGt~~s~va~~~   16 (64)
                      +|||+||+++++++++
T Consensus         4 lgiD~GTss~Ka~l~d   19 (536)
T TIGR01234         4 IGVDFGTLSGRALAVD   19 (536)
T ss_pred             EEEecCCCceEEEEEE
Confidence            5999999999999998

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=91.66  E-value=0.16  Score=27.77  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=15.6

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.+.+.+|+++..
T Consensus         4 lgiD~Ggt~i~~a~~d~~   21 (99)
T smart00732        4 LGLDPGRKGIGVAVVDET   21 (99)
T ss_pred             EEEccCCCeEEEEEECCC
Confidence            589999999999998643

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK00047 glpK glycerol kinase; Provisional

Probab=91.56  E-value=0.14  Score=36.07  Aligned_cols=18  Identities=17%  Similarity=0.329  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         8 lgiD~GTts~Ka~l~d~~   25 (498)
T PRK00047          8 LALDQGTTSSRAIIFDHD   25 (498)
T ss_pred             EEEecCCCceEEEEECCC
Confidence            589999999999999643

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=91.45  E-value=0.27  Score=32.76  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=18.4

Q ss_pred             CeeecCCccEEEEEEcC-CCceEEE
Q psy4514           1 MSVDLGSEWMKVAIVSP-GVPMEIA   24 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~-g~~~~iv   24 (64)
                      +|||+|++.+++.++++ +..++++
T Consensus         4 ~GIDiGStttK~Vlid~~~~~~~~~   28 (262)
T TIGR02261         4 AGIDIGTGAIKTVLFEVDGDKEECL   28 (262)
T ss_pred             EEEEcCcccEEEEEEecCCCeeEEE
Confidence            59999999999999983 4234444

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PLN02295 glycerol kinase

Probab=91.22  E-value=0.2  Score=35.51  Aligned_cols=18  Identities=17%  Similarity=0.233  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++++++..
T Consensus         3 lgID~GTts~Ka~l~d~~   20 (512)
T PLN02295          3 GAIDQGTTSTRFIIYDRD   20 (512)
T ss_pred             EEEecCCCceEEEEECCC
Confidence            589999999999999743

>TIGR01312 XylB D-xylulose kinase

Probab=90.60  E-value=0.28  Score=33.99  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+||++.++++++..
T Consensus         1 lgIDiGtt~ik~~l~d~~   18 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQ   18 (481)
T ss_pred             CceeecCcceEEEEECCC
Confidence            699999999999999754

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=90.19  E-value=0.23  Score=33.68  Aligned_cols=18  Identities=28%  Similarity=0.468  Sum_probs=16.4

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|++.+++.+++++
T Consensus        35 ~GIDiGStt~K~Vlld~~   52 (293)
T TIGR03192        35 CGIDVGSVSSQAVLVCDG   52 (293)
T ss_pred             EEEEeCchhEEEEEEeCC
Confidence            599999999999999865

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=89.88  E-value=0.19  Score=34.97  Aligned_cols=17  Identities=35%  Similarity=0.458  Sum_probs=15.3

Q ss_pred             CeeecCCccEEEEEEcC
Q psy4514           1 MSVDLGSEWMKVAIVSP   17 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~   17 (64)
                      ++||+||+++++++++.
T Consensus         1 ~aiD~Gtt~~k~~l~~~   17 (454)
T TIGR02627         1 VAVDLGASSGRVMLASY   17 (454)
T ss_pred             CcEeccCCchheEEEEE
Confidence            68999999999999864

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>PLN00130 succinate dehydrogenase (SDH3); Provisional

Probab=89.72  E-value=0.026  Score=36.20  Aligned_cols=18  Identities=11%  Similarity=0.062  Sum_probs=15.3

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||+|+||+|+|++.+.+.
T Consensus        60 ~g~~~gt~n~~~~~~e~~   77 (213)
T PLN00130         60 LGTGLGTNNAIREEREKS   77 (213)
T ss_pred             eccCCCcchHHHHHHhcc
Confidence            699999999999887544

>smart00268 ACTIN Actin

Probab=88.93  E-value=0.54  Score=31.67  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-C--------ceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--------NSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~--------~r~vG~~Ak~~   53 (64)
                      |.||+|+.++++++..+..+ .+        ..||+|+... .        ..++|+.|...
T Consensus         4 iviD~Gs~~~k~G~~~~~~P-~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~   56 (373)
T smart00268        4 IVIDNGSGTIKAGFAGEDEP-QV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEK   56 (373)
T ss_pred             EEEECCCCcEEEeeCCCCCC-cE--------EccceeeEecccccccCCCcceEecchhhhc
Confidence            57999999999988644322 22        2466666532 1        34789888543

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>PLN02669 xylulokinase

Probab=88.91  E-value=0.39  Score=34.67  Aligned_cols=18  Identities=11%  Similarity=0.355  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+||+..++.+++..
T Consensus        11 LGiD~GT~s~Ka~l~d~~   28 (556)
T PLN02669         11 LGFDSSTQSLKATVLDSN   28 (556)
T ss_pred             EEEecccCCeEEEEEcCC
Confidence            599999999999999754

>PTZ00280 Actin-related protein 3; Provisional

Probab=88.86  E-value=0.56  Score=32.37  Aligned_cols=53  Identities=11%  Similarity=0.038  Sum_probs=30.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce----EEEecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT----LVAFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS----~V~f~~~~r~vG~~Ak~~   53 (64)
                      |.||+|+.++++++..+..|--++++--++.....    ...+...+.++|+.|.+.
T Consensus         7 iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~   63 (414)
T PTZ00280          7 VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA   63 (414)
T ss_pred             EEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhC
Confidence            47999999999999754434334444433322210    112223356789988764

>PRK13321 pantothenate kinase; Reviewed

Probab=87.66  E-value=0.49  Score=30.80  Aligned_cols=18  Identities=17%  Similarity=0.451  Sum_probs=16.3

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|.|+.++|+++++
T Consensus         3 L~IDIGnT~ik~gl~~~~   20 (256)
T PRK13321          3 LLIDVGNTNIKLGVFDGD   20 (256)
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            589999999999999865

>PRK13317 pantothenate kinase; Provisional

Probab=87.30  E-value=0.79  Score=30.55  Aligned_cols=18  Identities=17%  Similarity=0.394  Sum_probs=16.3

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+|.|..++++++++
T Consensus         5 iGIDiGstt~K~v~~~~~   22 (277)
T PRK13317          5 IGIDAGGTLTKIVYLEEK   22 (277)
T ss_pred             EEEEeCcccEEEEEEcCC
Confidence            699999999999998766

>PRK13318 pantothenate kinase; Reviewed

Probab=87.16  E-value=0.56  Score=30.48  Aligned_cols=18  Identities=17%  Similarity=0.418  Sum_probs=16.3

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|.|+.++++++++
T Consensus         3 L~IDIGnT~iK~al~d~g   20 (258)
T PRK13318          3 LAIDVGNTNTVFGLYEGG   20 (258)
T ss_pred             EEEEECCCcEEEEEEECC
Confidence            489999999999999866

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=86.14  E-value=0.72  Score=26.69  Aligned_cols=18  Identities=44%  Similarity=0.654  Sum_probs=15.3

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|++.+++++++.+
T Consensus         2 ~~iDiGs~~~~~~i~~~~   19 (120)
T PF14450_consen    2 VVIDIGSSKTKVAIAEDG   19 (120)
T ss_dssp             EEEEE-SSSEEEEEEETT
T ss_pred             EEEEcCCCcEEEEEEEeC
Confidence            379999999999999887

>smart00842 FtsA Cell division protein FtsA

Probab=85.76  E-value=1.2  Score=27.50  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=17.7

Q ss_pred             CeeecCCccEEEEEEc---CCCceEEEe
Q psy4514           1 MSVDLGSEWMKVAIVS---PGVPMEIAL   25 (64)
Q Consensus         1 iGIDlGt~~s~va~~~---~g~~~~iv~   25 (64)
                      +|||+||++.++.+.+   +| .++|+-
T Consensus         2 ~~lDIGs~~ik~vv~~~~~~~-~~~i~g   28 (187)
T smart00842        2 VGLDIGTSKIKALVAEVDEDG-EINVIG   28 (187)
T ss_pred             EEEEeccceEEEEEEEEcCCC-CEEEEE
Confidence            4899999999987763   34 567664

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=84.37  E-value=2.6  Score=30.47  Aligned_cols=14  Identities=14%  Similarity=0.506  Sum_probs=11.8

Q ss_pred             CeeecCCccEEEEE
Q psy4514           1 MSVDLGSEWMKVAI   14 (64)
Q Consensus         1 iGIDlGt~~s~va~   14 (64)
                      +|||+||+.+.+=+
T Consensus         6 VGIDIGTSTTQlvf   19 (473)
T PF06277_consen    6 VGIDIGTSTTQLVF   19 (473)
T ss_pred             EEEeecCCceeEEE
Confidence            69999999888754

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PTZ00452 actin; Provisional

Probab=84.16  E-value=1.4  Score=30.31  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEE-EecCCceEEchhHHh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV-AFHKGNSGTDICDKL   52 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V-~f~~~~r~vG~~Ak~   52 (64)
                      |-||+|+.++++++..+..|--++++--|+.+.+..+ ...+++.++|+.|..
T Consensus         8 vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~   60 (375)
T PTZ00452          8 VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQA   60 (375)
T ss_pred             EEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhc
Confidence            4699999999999985553444555554543332111 111235578998754

>PTZ00281 actin; Provisional

Probab=84.14  E-value=1.7  Score=29.76  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKL   52 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~   52 (64)
                      |-||+|+.++++++..+..|--++++--|+.+... .+...+...++|+.|..
T Consensus         9 vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~   61 (376)
T PTZ00281          9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS   61 (376)
T ss_pred             EEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhc
Confidence            46999999999999755534445555544422221 11122335578887754

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=83.98  E-value=0.83  Score=32.59  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=16.6

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|++.+++.+++++
T Consensus         5 lGIDIGSTsTKaVVmd~~   22 (432)
T TIGR02259         5 VGIDLGSTTTKAVLMDDK   22 (432)
T ss_pred             EEEEcCchhEEEEEEcCC
Confidence            599999999999999877

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=83.87  E-value=0.77  Score=32.49  Aligned_cols=18  Identities=22%  Similarity=0.400  Sum_probs=16.2

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||.|+|.+++.+++++
T Consensus       147 lGIDiGSTttK~Vl~dd~  164 (404)
T TIGR03286       147 LGIDSGSTTTKAVVMEDN  164 (404)
T ss_pred             EEEEcChhheeeEEEcCC
Confidence            599999999999999865

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=83.63  E-value=1.2  Score=31.39  Aligned_cols=18  Identities=28%  Similarity=0.508  Sum_probs=17.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||.|+|..++.+++++
T Consensus       138 LGID~GSTtTK~VLm~d~  155 (396)
T COG1924         138 LGIDSGSTTTKAVLMEDG  155 (396)
T ss_pred             EEEecCCcceeEEEEeCC
Confidence            599999999999999998

>PTZ00004 actin-2; Provisional

Probab=81.85  E-value=1.6  Score=29.79  Aligned_cols=52  Identities=17%  Similarity=0.163  Sum_probs=29.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKL   52 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~   52 (64)
                      |-||+|+.++++++..+..|--++++--++...+. ......+..++|+.|..
T Consensus         9 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~   61 (378)
T PTZ00004          9 AVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQD   61 (378)
T ss_pred             EEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhc
Confidence            46999999999998755433334444444322211 01111234578887754

>PTZ00466 actin-like protein; Provisional

Probab=81.67  E-value=2.1  Score=29.43  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~~   53 (64)
                      |-||+|+.+++++...+..|--++++--|+.+... ......+..++|+.|...
T Consensus        15 iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~   68 (380)
T PTZ00466         15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEY   68 (380)
T ss_pred             EEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhh
Confidence            46999999999999755434334454444432221 111223356789887653

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=81.26  E-value=1.3  Score=28.26  Aligned_cols=16  Identities=38%  Similarity=0.738  Sum_probs=14.1

Q ss_pred             CeeecCCccEEEEEEc
Q psy4514           1 MSVDLGSEWMKVAIVS   16 (64)
Q Consensus         1 iGIDlGt~~s~va~~~   16 (64)
                      ++||||.||..|+.++
T Consensus        66 LalDlGGTnlRv~~V~   81 (206)
T PF00349_consen   66 LALDLGGTNLRVALVE   81 (206)
T ss_dssp             EEEEESSSSEEEEEEE
T ss_pred             EEEeecCcEEEEEEEE
Confidence            4799999999999874

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=80.94  E-value=4.2  Score=29.44  Aligned_cols=14  Identities=21%  Similarity=0.515  Sum_probs=11.8

Q ss_pred             CeeecCCccEEEEE
Q psy4514           1 MSVDLGSEWMKVAI   14 (64)
Q Consensus         1 iGIDlGt~~s~va~   14 (64)
                      +|||+||+.+.+=+
T Consensus         9 VGIDIGTsTTqlvf   22 (475)
T PRK10719          9 VGIDIGTTTTQVIF   22 (475)
T ss_pred             EEEeccCceEEEEE
Confidence            69999999988744

>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition

Probab=80.21  E-value=3  Score=24.29  Aligned_cols=18  Identities=17%  Similarity=0.540  Sum_probs=16.4

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||++.....++++.+.
T Consensus         2 vGiDv~k~~~~v~v~~~~   19 (144)
T PF01548_consen    2 VGIDVSKDTHDVCVIDPN   19 (144)
T ss_pred             EEEEcccCeEEEEEEcCC
Confidence            699999999999998777

This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.8
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.79
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.77
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.77
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.74
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.73
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.72
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.71
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.71
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	99.03
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	97.59
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	97.26
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.16
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	96.58
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	96.4
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	95.54
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	94.28
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	93.26
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	92.85
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	92.53
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	91.83
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	91.47
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	91.46
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	91.41
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	91.39
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	91.39
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	91.39
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	91.37
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	91.35
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	91.29
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	91.27
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	91.06
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	90.96
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	90.79
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	90.74
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	90.7
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	90.57
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	90.28
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	88.81
3djc_A	266	Type III pantothenate kinase; structural genomics,	88.15
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	87.89
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	87.44
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	87.13
1vhx_A	150	Putative holliday junction resolvase; structural g	83.27
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	82.86
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	81.54
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	81.35
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	81.29
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	81.11

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.80  E-value=2.7e-20  Score=132.34  Aligned_cols=62  Identities=24%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| +++|++|++|+|+|||+|+|.++++++|+.|++++..||+||+.
T Consensus         5 iGIDlGTtns~va~~~~g-~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~   66 (675)
T 3d2f_A            5 FGLDLGNNNSVLAVARNR-GIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVA   66 (675)
T ss_dssp             EEEECCSSEEEEEEEETT-EEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEEC
T ss_pred             EEEEcCCCcEEEEEEECC-eeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHH
Confidence            699999999999999999 88999999999999999999988999999999999999999874

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.79  E-value=4e-20  Score=128.65  Aligned_cols=62  Identities=27%  Similarity=0.348  Sum_probs=58.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| ++++++|++|+|+|||+|+|.++++++|+.|++++..||++|+.
T Consensus         7 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~   68 (554)
T 1yuw_A            7 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF   68 (554)
T ss_dssp             EEEEECSSEEEEEEECSS-SEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEEC
T ss_pred             EEEEeCcccEEEEEEECC-EEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehH
Confidence            699999999999999998 89999999999999999999988999999999999999999864

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.77  E-value=2.3e-19  Score=125.98  Aligned_cols=62  Identities=26%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++++| .++++.|++|+|+|||+|+|. ++++++|+.|++++..||++|+.
T Consensus         5 iGIDlGTT~S~Va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~   67 (605)
T 4b9q_A            5 IGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLF   67 (605)
T ss_dssp             EEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEEC
T ss_pred             EEEEcCCCcEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEeh
Confidence            699999999999999998 889999999999999999997 56899999999999999999864

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.77  E-value=3.1e-19  Score=125.27  Aligned_cols=61  Identities=26%  Similarity=0.326  Sum_probs=57.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++++| .++|+.|++|+|++||+|+|. ++++++|+.|++++..||++|+
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~   66 (605)
T 2kho_A            5 IGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTL   66 (605)
T ss_dssp             EEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEE
T ss_pred             EEEEcCCcCEEEEEEECC-EEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEe
Confidence            599999999999999998 889999999999999999995 5789999999999999999986

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.74  E-value=2.4e-18  Score=114.24  Aligned_cols=62  Identities=27%  Similarity=0.350  Sum_probs=58.7

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      ||||||||||+||++++| .++++.|..|+|++||+|+|.++++++|+.|+.++..+|++++.
T Consensus        26 iGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~   87 (404)
T 3i33_A           26 IGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIF   87 (404)
T ss_dssp             EEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEEC
T ss_pred             EEEEcCCccEEEEEEECC-eeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHH
Confidence            699999999999999999 88999999999999999999988999999999999999998864

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.73  E-value=3.7e-18  Score=113.79  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      |||||||||||||++.+| +++++.|..|+|++||+|+|.++++++|..|++++..+|++++.
T Consensus        16 vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~   77 (409)
T 4gni_A           16 IGITFGNSNSSIAHTVDD-KAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVA   77 (409)
T ss_dssp             EEEEECSSEEEEEEEETT-EEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEE
T ss_pred             EEEEcCCCeEEEEEEeCC-ceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHH
Confidence            599999999999999877 89999999999999999999999999999999999999998763

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.71  E-value=1.1e-17  Score=115.15  Aligned_cols=60  Identities=30%  Similarity=0.415  Sum_probs=56.7

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||||||||++.+| .+++++|++|+|++||+|+|.++++++|+.|++++..|| +++
T Consensus         5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~   64 (509)
T 2v7y_A            5 IGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTI   64 (509)
T ss_dssp             EEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEE
T ss_pred             EEEEcCCceEEEEEEECC-EEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcH
Confidence            599999999999999998 789999999999999999998889999999999999999 775

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.71  E-value=1.1e-17  Score=110.43  Aligned_cols=61  Identities=26%  Similarity=0.326  Sum_probs=56.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      ||||||||||+||++++| .++++.|++|++++||+|+|. ++++++|+.|+++...+|++++
T Consensus         5 vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~   66 (383)
T 1dkg_D            5 IGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTL   66 (383)
T ss_dssp             CEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEE
T ss_pred             EEEEcCCCCEEEEEEECC-eeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCcccee
Confidence            699999999999999988 789999999999999999995 5789999999999999998876

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=99.03  E-value=1.3e-10  Score=75.65  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=41.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC--ce-EEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--NS-GTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~--~r-~vG~~Ak~~~~~nP~nt~   62 (64)
                      |||||||+|+++++..++    ++.|      +||+|+|..+  ++ ++|+.|+++...+|.++.
T Consensus         6 igIDlGT~~s~v~~~~~~----~~~~------~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~   60 (344)
T 1jce_A            6 IGIDLGTANTLVFLRGKG----IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK   60 (344)
T ss_dssp             EEEEECSSEEEEEETTTE----EEEE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE
T ss_pred             EEEEcCcCcEEEEECCCC----EEEe------eCcEEEEecCCCcEEEEcHHHHHhcccCCCCeE
Confidence            599999999999975333    2333      7999999754  44 799999999999988753

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=97.59  E-value=2.6e-05  Score=51.54  Aligned_cols=53  Identities=13%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~~   53 (64)
                      |+||+||.++++++..+..+.-++++-.+....++ .+.+..+..+||+.|+++
T Consensus         8 ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~   61 (375)
T 2fxu_A            8 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK   61 (375)
T ss_dssp             EEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHH
T ss_pred             EEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhc
Confidence            58999999999999866645556777666555543 234444567899999875

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=97.26  E-value=7.1e-05  Score=49.86  Aligned_cols=53  Identities=11%  Similarity=-0.007  Sum_probs=30.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce---------EEEecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT---------LVAFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS---------~V~f~~~~r~vG~~Ak~~   53 (64)
                      |+||+||.++++++..+..+.-++++--+....++         .+.+.+...+||+.|++.
T Consensus         8 ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~   69 (418)
T 1k8k_A            8 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK   69 (418)
T ss_dssp             EEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSC
T ss_pred             EEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhc
Confidence            58999999999998755434334444333332221         011112347899998865

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.16  E-value=0.00028  Score=44.52  Aligned_cols=23  Identities=35%  Similarity=0.500  Sum_probs=19.1

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEe
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIAL   25 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~   25 (64)
                      +|||+|||++++++++++ . +|+.
T Consensus         4 lGID~GsT~tk~av~d~~-~-~il~   26 (276)
T 4ehu_A            4 MGLDIGSTASKGVILKNG-E-DIVA   26 (276)
T ss_dssp             EEEEECSSCEEEEEEETT-T-EEEE
T ss_pred             EEEEcCccEEEEEEEECC-C-eEEE
Confidence            599999999999999888 3 4543

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=96.58  E-value=0.00046  Score=45.08  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEE
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVA   38 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~   38 (64)
                      +|||+||+++|+++++++ ++++  +..|.+.+||.+.
T Consensus        16 vgiDiGt~~i~~~~~~~~-~~~i--~~~g~~~~ps~~~   50 (377)
T 2ych_A           16 LGLEIGASALKLVEVSGN-PPAL--KALASRPTPPGLL   50 (377)
T ss_dssp             EEEEECSSEEEEEEEETT-TTEE--EEEEEEECCTTSE
T ss_pred             EEEEeCCCeEEEEEEeCC-ceEE--EEEEeEECCCCcc
Confidence            599999999999999866 5555  4557777787643

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=96.40  E-value=0.00053  Score=45.69  Aligned_cols=53  Identities=9%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEE---EecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV---AFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V---~f~~~~r~vG~~Ak~~   53 (64)
                      |+||+||.++++++..+..+.-++++-.+....++..   .+..+..++|+.|+..
T Consensus         9 ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~   64 (394)
T 1k8k_B            9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASEL   64 (394)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhc
Confidence            5899999999999875553433566655655554432   2333456799988765

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=95.54  E-value=0.021  Score=36.69  Aligned_cols=50  Identities=16%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             CeeecCCccEEEEEEc-CCCceEEEe--CC----CC---CCccceEEEecCCceEEchhHH
Q psy4514           1 MSVDLGSEWMKVAIVS-PGVPMEIAL--NK----ES---KRKTPTLVAFHKGNSGTDICDK   51 (64)
Q Consensus         1 iGIDlGt~~s~va~~~-~g~~~~iv~--n~----~g---~r~tpS~V~f~~~~r~vG~~Ak   51 (64)
                      +||||||+|++++... +| .+..++  +.    ..   .+.....+.+.+.+..+|..|.
T Consensus         3 igiD~G~sntK~~~~~~~g-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~g~~y~vg~~a~   62 (320)
T 2zgy_A            3 VFIDDGSTNIKLQWQESDG-TIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISP   62 (320)
T ss_dssp             EEEEECSSEEEEEEECSSS-CEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCB
T ss_pred             EEEecCCccceEEEecCCC-EEEEEecCceeecccccccCCCceeEEEECCEEEEEccccc
Confidence            5999999999999854 45 434332  10    00   1112223344444567888774

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=94.28  E-value=0.0081  Score=39.39  Aligned_cols=14  Identities=29%  Similarity=0.233  Sum_probs=12.2

Q ss_pred             CeeecCCccEEEEE
Q psy4514           1 MSVDLGSEWMKVAI   14 (64)
Q Consensus         1 iGIDlGt~~s~va~   14 (64)
                      |||||||.|.++..
T Consensus        24 igiDlG~~~tkv~~   37 (346)
T 2fsj_A           24 VGLDVGYGDTKVIG   37 (346)
T ss_dssp             EEEEECSSEEEEEC
T ss_pred             EEEecCCcceeEEe
Confidence            59999999999874

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=93.26  E-value=0.074  Score=33.75  Aligned_cols=18  Identities=33%  Similarity=0.569  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|+|+.++++++..
T Consensus         6 lGiD~Gst~~k~~l~d~~   23 (270)
T 1hux_A            6 LGIDVGSTASKCIILKDG   23 (270)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEeccceEEEEEEeCC
Confidence            599999999999999764

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=92.85  E-value=0.084  Score=36.23  Aligned_cols=18  Identities=17%  Similarity=0.290  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus        10 lgIDiGtts~k~~l~d~~   27 (508)
T 3ifr_A           10 IGLDIGTTSTIAILVRLP   27 (508)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEecCcceEEEEECCC
Confidence            599999999999999754

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=92.53  E-value=0.09  Score=36.61  Aligned_cols=41  Identities=12%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC----CceEEchhH
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----GNSGTDICD   50 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~----~~r~vG~~A   50 (64)
                      |+||+||.++++++..++.+ .        ...||+|+...    +..+||+.|
T Consensus        26 iVID~GS~~~kaG~ag~~~P-~--------~v~PSvVg~~~~~~~~~~~vG~e~   70 (498)
T 3qb0_A           26 VVIDPGSYTTNIGYSGSDFP-Q--------SILPSVYGKYTADEGNKKIFSEQS   70 (498)
T ss_dssp             EEEECCSSEEEEEETTCSSC-S--------EEEESEEEEESSCSSCCEECCTTG
T ss_pred             EEEECCCcEEEEEECCCCCe-e--------eecCceeEEeccCCCccEEEecHH
Confidence            57999999999988644422 2        23588888742    356899864

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=91.83  E-value=0.1  Score=35.97  Aligned_cols=18  Identities=11%  Similarity=0.335  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++.+++..
T Consensus         7 lgID~GTss~Ka~l~d~~   24 (526)
T 3ezw_A            7 VALDQGTTSSRAVVMDHD   24 (526)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEccccceeeeEEcCC
Confidence            599999999999999754

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=91.47  E-value=0.11  Score=35.89  Aligned_cols=18  Identities=17%  Similarity=0.368  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+|||++++++++..
T Consensus         8 lgIDiGtts~ka~l~d~~   25 (554)
T 3l0q_A            8 IGVDVGTGSARAGVFDLQ   25 (554)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEECcccEEEEEECCC
Confidence            599999999999999754

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=91.46  E-value=0.11  Score=35.38  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         7 lgIDiGtT~~k~~l~d~~   24 (503)
T 2w40_A            7 LSIDQSTQSTKVFFYDEE   24 (503)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEeCCcceEEEEECCC
Confidence            599999999999999754

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=91.41  E-value=0.12  Score=35.51  Aligned_cols=18  Identities=28%  Similarity=0.446  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||+.++++++..
T Consensus         9 lgIDiGTts~Ka~l~d~~   26 (482)
T 3h6e_A            9 IVIDLGKTLSKVSLWDLD   26 (482)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEcCCCCeEEEEEECC
Confidence            599999999999999754

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=91.39  E-value=0.12  Score=35.45  Aligned_cols=18  Identities=17%  Similarity=0.276  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         7 lgIDiGtts~K~~l~d~~   24 (504)
T 3ll3_A            7 IGMDVGTTATKGVLYDIN   24 (504)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEecCCceEEEEEcCC
Confidence            599999999999999754

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=91.39  E-value=0.12  Score=35.70  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=15.1

Q ss_pred             CeeecCCccEEEEEEc
Q psy4514           1 MSVDLGSEWMKVAIVS   16 (64)
Q Consensus         1 iGIDlGt~~s~va~~~   16 (64)
                      +|||+|||++++++++
T Consensus         8 lgIDiGtts~ka~l~d   23 (515)
T 3i8b_A            8 AGVDTSTQSCKVRVTD   23 (515)
T ss_dssp             EEEEECSSEEEEEEEE
T ss_pred             EEEEeccccEEEEEEE
Confidence            5999999999999998

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=91.39  E-value=0.09  Score=35.64  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=15.2

Q ss_pred             CeeecCCccEEEEEEcC
Q psy4514           1 MSVDLGSEWMKVAIVSP   17 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~   17 (64)
                      +|||+|||+.++++++.
T Consensus         7 lgiDiGtts~k~~l~d~   23 (489)
T 2uyt_A            7 VAVDLGASSGRVMLARY   23 (489)
T ss_dssp             EEEEECSSEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEe
Confidence            59999999999999863

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=91.37  E-value=0.12  Score=35.75  Aligned_cols=18  Identities=22%  Similarity=0.355  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++.+++..
T Consensus        13 lgID~GTts~Ka~l~d~~   30 (538)
T 4bc3_A           13 LGWDFSTQQVKVVAVDAE   30 (538)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEEcCcCEEEEEECCC
Confidence            599999999999999754

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=91.35  E-value=0.12  Score=35.17  Aligned_cols=18  Identities=11%  Similarity=0.287  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         5 lgiDiGtT~~k~~l~d~~   22 (495)
T 2dpn_A            5 LALDQGTTSSRAILFTLE   22 (495)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEeeCCcceEEEEECCC
Confidence            599999999999999754

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=91.27  E-value=0.13  Score=34.95  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||+.++++++..
T Consensus         3 lgiDiGtt~~k~~l~d~~   20 (484)
T 2itm_A            3 IGIDLGTSGVKVILLNEQ   20 (484)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEecCcccEEEEECCC
Confidence            599999999999999744

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=91.06  E-value=0.14  Score=35.04  Aligned_cols=18  Identities=17%  Similarity=0.353  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         9 lgIDiGtts~k~~l~d~~   26 (501)
T 3g25_A            9 LSIDQGTTSSRAILFNQK   26 (501)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEeCccceEEEEEcCC
Confidence            599999999999999754

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=90.96  E-value=0.14  Score=34.90  Aligned_cols=18  Identities=22%  Similarity=0.327  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         6 lgiDiGtt~~k~~l~d~~   23 (497)
T 2zf5_O            6 LSLDEGTTSARAIIFDRE   23 (497)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEecCCchhEEEEECCC
Confidence            599999999999999753

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=90.74  E-value=0.15  Score=35.11  Aligned_cols=18  Identities=11%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+|||++++++++..
T Consensus        29 lgIDiGtts~k~~l~d~~   46 (520)
T 4e1j_A           29 LAIDQGTTSTRAIVFDGN   46 (520)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEeCCcceEEEEECCC
Confidence            589999999999999754

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=90.70  E-value=0.15  Score=34.90  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         8 lgIDiGtts~k~~l~d~~   25 (506)
T 3h3n_X            8 MAIDQGTTSSRAIIFDRN   25 (506)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEcCCCceEEEEECCC
Confidence            599999999999999754

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=90.57  E-value=0.16  Score=34.86  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=15.9

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||+.++++++..
T Consensus         8 lgIDiGtts~k~~l~d~~   25 (511)
T 3hz6_A            8 ATFDIGTTEVKAALADRD   25 (511)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEeCCCceEEEEECCC
Confidence            599999999999999754

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=90.28  E-value=0.18  Score=34.51  Aligned_cols=18  Identities=11%  Similarity=0.342  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|||++++++++..
T Consensus         5 lgiDiGtts~k~~l~d~~   22 (504)
T 2d4w_A            5 LAIDQGTTSSRAIVFDHS   22 (504)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEecCCcceEEEEECCC
Confidence            599999999999999754

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=88.81  E-value=0.26  Score=32.09  Aligned_cols=18  Identities=17%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|..++.+++++
T Consensus        23 iGIDiGsTt~K~V~~~~~   40 (287)
T 2ews_A           23 VGIDAGGTLIKIVQEQDN   40 (287)
T ss_dssp             EEEEECSSEEEEEEECSS
T ss_pred             EEEEEChhhEEEEEEcCC
Confidence            599999999999999776

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=88.15  E-value=0.27  Score=31.53  Aligned_cols=18  Identities=11%  Similarity=0.357  Sum_probs=16.5

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|+|+.+.|+++++
T Consensus         5 L~IDIGNT~iK~gl~d~~   22 (266)
T 3djc_A            5 LCIDVGNSHIYGGVFDGD   22 (266)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            479999999999999877

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=87.89  E-value=0.37  Score=30.43  Aligned_cols=18  Identities=28%  Similarity=0.313  Sum_probs=15.5

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|+++++++++|
T Consensus         3 lgiDiGGT~i~~~l~d~g   20 (291)
T 1zxo_A            3 LIADSGSTKTDWCVVLNG   20 (291)
T ss_dssp             -CEECCTTCEEEEEECSS
T ss_pred             EEEEeccccEEEEEEcCC
Confidence            699999999999999844

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=87.44  E-value=0.46  Score=30.02  Aligned_cols=18  Identities=28%  Similarity=0.254  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|+++++++++|
T Consensus         3 lgiDiGGT~~~~~l~d~g   20 (291)
T 1zbs_A            3 LIGDSGSTKTDWCIAKEG   20 (291)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEeCccceEEEEEeCC
Confidence            599999999999999844

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=87.13  E-value=0.36  Score=29.76  Aligned_cols=18  Identities=22%  Similarity=0.414  Sum_probs=15.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||+++++.+++..
T Consensus        31 ~gIDiGS~s~k~vi~~~~   48 (272)
T 3h1q_A           31 VGVDLGTADIVLVVTDQE   48 (272)
T ss_dssp             EEEECCSSEEEEEEECTT
T ss_pred             EEEEcccceEEEEEECCC
Confidence            489999999999887544

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=83.27  E-value=0.68  Score=27.27  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             CeeecCCccEEEEEEcCCC----ceEEEeC
Q psy4514           1 MSVDLGSEWMKVAIVSPGV----PMEIALN   26 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~----~~~iv~n   26 (64)
                      +|||+|+..+-+|+.+...    +..+|..
T Consensus         6 LGiDpG~~riGvAv~d~~g~~a~p~~~I~~   35 (150)
T 1vhx_A            6 LGLDLGTKTLGVALSDEMGWTAQGIETIKI   35 (150)
T ss_dssp             EEEEECSSEEEEEEECTTSSSEEEEEEEEC
T ss_pred             EEEEccCCEEEEEEEECCCCEEeeEEEEEc
Confidence            5999999999999997541    3456653

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=82.86  E-value=0.74  Score=29.12  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|++++++++..
T Consensus        14 lGiDiGgT~i~~~l~d~~   31 (305)
T 1zc6_A           14 IGVDGGGTGTRIRLHASD   31 (305)
T ss_dssp             EEEEECSSCEEEEEEETT
T ss_pred             EEEEcCccceEEEEEcCC
Confidence            599999999999999743

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=81.54  E-value=0.71  Score=31.72  Aligned_cols=17  Identities=18%  Similarity=0.399  Sum_probs=15.2

Q ss_pred             CeeecCCccEEEEEEcC
Q psy4514           1 MSVDLGSEWMKVAIVSP   17 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~   17 (64)
                      +|||||.||.++++++.
T Consensus        64 laiDlGGTnirv~lV~~   80 (457)
T 2yhx_A           64 LAIVMGGGDLEVILISL   80 (457)
T ss_dssp             EEEEECSSEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEe
Confidence            58999999999999953

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=81.35  E-value=0.86  Score=28.74  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=16.2

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +.||.|+|+.+.|+++++
T Consensus         6 L~IDIGNT~ik~gl~~~~   23 (249)
T 3bex_A            6 LLVDVGNTHSVFSITEDG   23 (249)
T ss_dssp             EEEEECSSEEEEEEESSS
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            369999999999999876

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=81.29  E-value=1.1  Score=28.03  Aligned_cols=18  Identities=22%  Similarity=0.184  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|++.+++++..
T Consensus         5 lgiDiGgt~~~~~l~d~~   22 (299)
T 2e2o_A            5 VGVDAGGTKTKAVAYDCE   22 (299)
T ss_dssp             EEEEECSSCEEEEEECTT
T ss_pred             EEEEeCCCcEEEEEEcCC
Confidence            599999999999999644

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=81.11  E-value=0.8  Score=31.33  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=15.0

Q ss_pred             CeeecCCccEEEEEEcC
Q psy4514           1 MSVDLGSEWMKVAIVSP   17 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~   17 (64)
                      +|||||.||..|++++-
T Consensus        71 lalDlGGTn~Rv~~V~l   87 (451)
T 1bdg_A           71 LALDLGGTNYRVLSVTL   87 (451)
T ss_dssp             EEEEESSSSEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEec
Confidence            58999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	3e-07
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	1e-04

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          +DLGS +  V +   G   EI  N +  R TP+ VAF    
Sbjct: 6  IDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTE 45

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 35.0 bits (80), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          +DLG+    VAI+    P  +  N E  R TP+++A+ +  
Sbjct: 5  IDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDG 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.84
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.8
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.96
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.03
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	94.91
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	94.9
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	94.36
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	94.18
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	93.64
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	92.7
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	92.42
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	91.88
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	91.64
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	90.67
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	89.57
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	88.59
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	88.59
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	86.81
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	86.8
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	83.47
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	83.38

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1e-21  Score=119.29  Aligned_cols=62  Identities=29%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG   63 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~   63 (64)
                      ||||||||||+||++++| ++++++|++|+|++||+|+|.++++++|+.|+.++..||++++.
T Consensus         4 vGIDfGTt~s~va~~~~g-~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~   65 (185)
T d1bupa1           4 VGIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF   65 (185)
T ss_dssp             EEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEEC
T ss_pred             EEEEcChhcEEEEEEECC-EEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchh
Confidence            699999999999999999 89999999999999999999999999999999999999998863

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.80  E-value=2.3e-20  Score=113.06  Aligned_cols=61  Identities=26%  Similarity=0.326  Sum_probs=57.2

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ   62 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~   62 (64)
                      ||||||||||+||++++| .+++++|++|+|++||+|+|. ++++++|+.|+++...+|++++
T Consensus         3 vGIDfGTt~s~va~~~~~-~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i   64 (183)
T d1dkgd1           3 IGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTL   64 (183)
T ss_dssp             CEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEE
T ss_pred             EEEEcChhcEEEEEEECC-EEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEE
Confidence            699999999999999998 789999999999999999996 4689999999999999999875

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=2.4e-10  Score=65.40  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=35.8

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec---CCceEEchhHHhhhhcCCCCc
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---KGNSGTDICDKLIGCWTPVIT   61 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~---~~~r~vG~~Ak~~~~~nP~nt   61 (64)
                      ||||||||||+|++...+    ++.|+      |+.+++.   +....+|++|+.+...+|.++
T Consensus         3 iGIDlGTtns~va~~~~~----~v~~~------~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~   56 (137)
T d1jcea1           3 IGIDLGTANTLVFLRGKG----IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGKTPATI   56 (137)
T ss_dssp             EEEEECSSEEEEEETTTE----EEEEE------ESCEEEETTTCCEEEESHHHHTTTTCCCTTE
T ss_pred             EEEEcChhhEEEEEeCCC----EEeec------CCcceEecCCCeEEEEehHHhhhhhhccccc
Confidence            699999999999985443    33332      5666653   344558888888887777664

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.03  E-value=0.0023  Score=37.41  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEe
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIAL   25 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~   25 (64)
                      ||||+|.|++++++++.. . +++.
T Consensus         5 lGIDiGGT~~k~~vvd~~-g-~il~   27 (259)
T d1huxa_           5 LGIDVGSTASKCIILKDG-K-EIVA   27 (259)
T ss_dssp             EEEEECSSEEEEEEEETT-T-EEEE
T ss_pred             EEEEeCcceEEEEEEcCC-C-cEEE
Confidence            699999999999999876 3 4554

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.90  E-value=0.011  Score=34.29  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=19.0

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEe
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIAL   25 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~   25 (64)
                      ||||+|.|+.+++++++. . +++.
T Consensus         3 iGIDiGGT~ik~~lvd~~-g-~i~~   25 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQDN-Q-RTFK   25 (267)
T ss_dssp             EEEEECSSEEEEEEECSS-C-EEEE
T ss_pred             EEEEEChhhEEEEEEeCC-C-cEEE
Confidence            699999999999999877 4 4444

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=94.36  E-value=0.015  Score=30.85  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||.|+|++++++++..
T Consensus         7 lGID~GGT~tk~~l~d~~   24 (114)
T d1zc6a1           7 IGVDGGGTGTRIRLHASD   24 (114)
T ss_dssp             EEEEECSSCEEEEEEETT
T ss_pred             EEEEcCcceEEEEEEcCC
Confidence            599999999999999654

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=94.18  E-value=0.0053  Score=36.83  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+||++.++++++..
T Consensus         4 lgiDiGTtsvKa~l~D~~   21 (252)
T d1r59o1           4 MAIDQGTTSSRAIIFDRN   21 (252)
T ss_dssp             EEEBCCSSBCBCCEECSS
T ss_pred             EEEEecccceeeeEEeCC
Confidence            599999999999999754

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.64  E-value=0.023  Score=29.97  Aligned_cols=18  Identities=11%  Similarity=0.346  Sum_probs=16.0

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+|.|+..+++++..
T Consensus         3 iGiDiGgT~i~~~l~d~~   20 (117)
T d2ap1a2           3 YGFDIGGTKIALGVFDST   20 (117)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEECcceEEEEEEeCC
Confidence            699999999999999654

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.041  Score=28.83  Aligned_cols=18  Identities=17%  Similarity=0.292  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +++|+|.|++++|+++.+
T Consensus         5 L~~DIGGTn~r~alv~~~   22 (110)
T d1q18a1           5 LVGDVGGTNARLALCDIA   22 (110)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEECchhEEEEEEEcC
Confidence            479999999999999865

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.047  Score=28.92  Aligned_cols=18  Identities=17%  Similarity=0.547  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|+..+++++..
T Consensus         4 lgiDiGgT~i~~~l~d~~   21 (119)
T d2aa4a1           4 LAIDIGGTKLAAALIGAD   21 (119)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEeCcCEEEEEEEcCC
Confidence            599999999999999644

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=91.88  E-value=0.074  Score=28.20  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=15.3

Q ss_pred             CeeecCCccEEEEEEcC
Q psy4514           1 MSVDLGSEWMKVAIVSP   17 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~   17 (64)
                      ||||+|.|+..+++++.
T Consensus         5 lGiDiGgT~i~~~l~d~   21 (129)
T d1woqa1           5 IGIDIGGTGIKGGIVDL   21 (129)
T ss_dssp             EEEEECSSEEEEEEEET
T ss_pred             EEEEECcceEEEEEEEC
Confidence            69999999999999963

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=91.64  E-value=0.096  Score=27.57  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=16.7

Q ss_pred             CeeecCCccEEEEEEcCCC
Q psy4514           1 MSVDLGSEWMKVAIVSPGV   19 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~   19 (64)
                      +-||.|+|+.+.|+++++.
T Consensus         3 L~IDIGNT~ik~~l~~~~~   21 (118)
T d3bexa1           3 LLVDVGNTHSVFSITEDGK   21 (118)
T ss_dssp             EEEEECSSEEEEEEESSSS
T ss_pred             EEEEECCCeEEEEEEECCE
Confidence            3699999999999998873

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=90.67  E-value=0.064  Score=28.37  Aligned_cols=18  Identities=11%  Similarity=0.121  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +|||+|.|+..+++++..
T Consensus         3 ~giDiGgT~i~~~l~d~~   20 (118)
T d1xc3a1           3 GGIEAGGTKFVCAVGRED   20 (118)
T ss_dssp             EEEEECSSEEEEEEECTT
T ss_pred             EEEEeccCEEEEEEEcCC
Confidence            499999999999999743

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.57  E-value=0.099  Score=27.66  Aligned_cols=18  Identities=28%  Similarity=0.588  Sum_probs=15.7

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|.|+.++++++..
T Consensus         4 ~~iDiGgT~i~~~l~d~~   21 (114)
T d2gupa1           4 ATIDIGGTGIKFASLTPD   21 (114)
T ss_dssp             EEEEEETTEEEEEEECTT
T ss_pred             EEEEeCcccEEEEEEcCC
Confidence            489999999999999643

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.59  E-value=0.087  Score=29.36  Aligned_cols=13  Identities=31%  Similarity=0.366  Sum_probs=11.1

Q ss_pred             CeeecCCccEEEE
Q psy4514           1 MSVDLGSEWMKVA   13 (64)
Q Consensus         1 iGIDlGt~~s~va   13 (64)
                      +|||+|..+.++.
T Consensus         4 igiD~G~g~tK~~   16 (164)
T d2fsja2           4 VGLDVGYGDTKVI   16 (164)
T ss_dssp             EEEEECSSEEEEE
T ss_pred             EEEEcCCcceEEE
Confidence            5999999998864

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.59  E-value=0.23  Score=25.90  Aligned_cols=18  Identities=17%  Similarity=0.423  Sum_probs=16.1

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      +-||+|+|+.+.|+++++
T Consensus         3 LliDiGNT~iK~~~~~~~   20 (114)
T d2f9wa2           3 LELDCGNSLIKWRVIEGA   20 (114)
T ss_dssp             EEEEECSSCEEEEEEETT
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            369999999999999877

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.34  Score=27.29  Aligned_cols=52  Identities=15%  Similarity=0.032  Sum_probs=29.2

Q ss_pred             CeeecCCccEEEEEEcCCCce--EEEeCCCC-------CCccceEEEecCCceEEchhHHh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPM--EIALNKES-------KRKTPTLVAFHKGNSGTDICDKL   52 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~--~iv~n~~g-------~r~tpS~V~f~~~~r~vG~~Ak~   52 (64)
                      ||||.|..|.+++...+...+  -+.++...       ....+..+.+.+.+..+|+.+..
T Consensus         3 I~iD~Gy~nvK~a~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~y~v~G~~Y~vG~~~~~   63 (157)
T d2zgya1           3 VFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD   63 (157)
T ss_dssp             EEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBS
T ss_pred             EEEecCCCcEEEEEecCCCcEeEEEeccccccccccccCCCceEEEEECCEEEEEcCCccc
Confidence            699999999999965532122  23333211       11112334455556678887653

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.80  E-value=0.18  Score=27.33  Aligned_cols=53  Identities=11%  Similarity=0.109  Sum_probs=28.5

Q ss_pred             CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEE-EecCCceEEchhHHhh
Q psy4514           1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV-AFHKGNSGTDICDKLI   53 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V-~f~~~~r~vG~~Ak~~   53 (64)
                      |-||+|+-+++++...+..|--++++..|+....... ......+++|+.|...
T Consensus         2 vViD~Gs~~~k~G~age~~P~~~~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~   55 (140)
T d2fxua1           2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK   55 (140)
T ss_dssp             EEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHH
T ss_pred             EEEECCCCeEEEeeCCCCCcceEeccceeeecccccccCccccceeeChhHhhc
Confidence            4699999999999865543434554433332111111 1123456788887653

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.31  Score=28.93  Aligned_cols=18  Identities=17%  Similarity=0.292  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ++||+|.|+.++|+++..
T Consensus         4 L~~DIGGT~ir~glvd~~   21 (319)
T d1sz2a1           4 LVGDVGGTNARLALCDIA   21 (319)
T ss_dssp             EEEEEETTEEEEEEEETT
T ss_pred             EEEEEChhheeeEEEECC
Confidence            479999999999999754

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.38  E-value=0.3  Score=25.63  Aligned_cols=18  Identities=0%  Similarity=0.329  Sum_probs=15.8

Q ss_pred             CeeecCCccEEEEEEcCC
Q psy4514           1 MSVDLGSEWMKVAIVSPG   18 (64)
Q Consensus         1 iGIDlGt~~s~va~~~~g   18 (64)
                      ||||+|.++..+++++-.
T Consensus         7 igidig~~~i~~~l~d~~   24 (128)
T d2hoea3           7 LGIEVTRDEIAACLIDAS   24 (128)
T ss_dssp             EEEEECSSEEEEEEEETT
T ss_pred             EEEEECCCEEEEEEEcCC
Confidence            599999999999999644