Psyllid ID: psy4523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNMLDPSLQSKY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccEEccccccccccccccccEEEEEEEccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccEEEEEEcccEccccccHHHcccccccEEEEEEHHccccccccccEEcccHHccccccHcccc
Coil and Loop (DISEMBL)
mteekkeskstdehINLKvlgqdnnvvqfkikkgtplrKLMNAYCERCVSILSVLITLQnlsmstvrfrfdgqaineqdtpstlemeegdTIEIYQQqtggfkqtpqlqiwhtesnmldpslqsky
Flexible Loop (DISEMBL)
mteekkeskstdehinlkvlgqdnnvvqfkiKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFdgqaineqdtpstlemeeGDTIEIYQQQTGGFKQTPQLQIWHtesnmldpslqsky
Low Complexity Region (SEG)
MteekkeskstDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNMLDPSLQSKY
Disordered region (IsUnstruct)
**************INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA*******************IY************LQIW***************
Disordered Region (DISOPRED)
****************LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESN**********
Disordered Region (DISEMBL)
************EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNMLDPSLQSKY
Disordered Region (DISPRO)
***********DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNMLDPSL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNMLDPSLQSKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P55854	103	Small ubiquitin-related m	yes	N/A	0.746	0.912	0.579	5e-28
Q5XIF4	110	Small ubiquitin-related m	yes	N/A	0.714	0.818	0.601	6e-28
Q5ZHQ1	94	Small ubiquitin-related m	yes	N/A	0.722	0.968	0.596	7e-28
Q17QV3	104	Small ubiquitin-related m	yes	N/A	0.714	0.865	0.601	8e-28
Q9Z172	110	Small ubiquitin-related m	yes	N/A	0.714	0.818	0.601	9e-28
Q6DK72	94	Small ubiquitin-related m	yes	N/A	0.714	0.957	0.592	2e-27
Q7SZ22	94	Small ubiquitin-related m	N/A	N/A	0.714	0.957	0.592	2e-27
Q6DI05	94	Small ubiquitin-related m	yes	N/A	0.714	0.957	0.592	4e-27
Q6NV25	94	Small ubiquitin-related m	yes	N/A	0.714	0.957	0.582	8e-27
P61959	95	Small ubiquitin-related m	no	N/A	0.714	0.947	0.605	9e-27

>sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 13/107 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG  ++
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 96

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.
Homo sapiens (taxid: 9606)

>sp|Q5XIF4|SUMO3_RAT Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1

 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZHQ1|SUMO3_CHICK Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 13/104 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG 
Sbjct: 50  QGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I.

Gallus gallus (taxid: 9031)

>sp|Q17QV3|SUMO3_BOVIN Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Bos taurus (taxid: 9913)

>sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Mus musculus (taxid: 10090)

>sp|Q6DK72|SUMO3_XENTR Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYC+R           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDR----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Xenopus tropicalis (taxid: 8364)

>sp|Q7SZ22|SUMO3_XENLA Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYC+R           
Sbjct: 1   MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDR----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Xenopus laevis (taxid: 8355)

>sp|Q6DI05|SUMO3_DANRE Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 74/103 (71%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+EEK     K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEEKPREGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LS+  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Danio rerio (taxid: 7955)

>sp|Q6NV25|SMO3L_DANRE Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=3 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 13/103 (12%)

Query: 1   MTEEKKES--KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITL 58
           M+E+K +   K+ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           
Sbjct: 1   MSEDKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER----------- 49

Query: 59  QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q LS+  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  QGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Danio rerio (taxid: 7955)

>sp|P61959|SUMO2_RAT Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 74/104 (71%), Gaps = 14/104 (13%)

Query: 1   MTEEK-KESKSTD--EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLIT 57
           M +EK KE   T+  +HINLKV GQD +VVQFKIK+ TPL KLM AYCER          
Sbjct: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50

Query: 58  LQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            Q LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 51  -QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

Ubiquitin-like protein that can be covalently attached to proteins as a monomer or as a lysine-linked polymer. Covalent attachment via an isopeptide bond to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4. This post-translational modification on lysine residues of proteins plays a crucial role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Polymeric SUMO2 chains are also susceptible to polyubiquitination which functions as a signal for proteasomal degradation of modified proteins.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
322801459	103	hypothetical protein SINV_07820 [Solenop	0.722	0.883	0.696	2e-33
307181428	92	Small ubiquitin-related modifier 3 [Camp	0.714	0.978	0.702	2e-33
157108923	95	hypothetical protein AaeL_AAEL015064 [Ae	0.714	0.947	0.725	2e-33
170051006	95	conserved hypothetical protein [Culex qu	0.714	0.947	0.725	2e-33
307198848	92	Small ubiquitin-related modifier 3 [Harp	0.714	0.978	0.702	3e-33
242022119	126	conserved hypothetical protein [Pediculu	0.706	0.706	0.701	4e-33
66549336	93	PREDICTED: small ubiquitin-related modif	0.714	0.967	0.693	1e-32
340716995	92	PREDICTED: small ubiquitin-related modif	0.722	0.989	0.676	2e-32
158296408	89	AGAP000852-PA [Anopheles gambiae str. PE	0.706	1.0	0.705	3e-32
156541958	91	PREDICTED: small ubiquitin-related modif	0.706	0.978	0.702	3e-32

>gi|322801459|gb|EFZ22120.1| hypothetical protein SINV_07820 [Solenopsis invicta]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 81/102 (79%), Gaps = 11/102 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++E KE+K+  EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 11  MSDEPKETKTESEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRV-----------G 59

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           L+++ VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGGF
Sbjct: 60  LAIAAVRFRFDGQPINELDTPTTLEMEEGDTIEVYQQQTGGF 101

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181428|gb|EFN69023.1| Small ubiquitin-related modifier 3 [Camponotus floridanus]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%), Gaps = 11/101 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++EKKE+K+  EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 1   MSDEKKETKAESEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRV-----------G 49

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           L+++ VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGG
Sbjct: 50  LAIAAVRFRFDGQPINELDTPTTLEMEEGDTIEVYQQQTGG 90

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108923|ref|XP_001650445.1| hypothetical protein AaeL_AAEL015064 [Aedes aegypti] gi|108868487|gb|EAT32712.1| AAEL015064-PB [Aedes aegypti]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 81/102 (79%), Gaps = 12/102 (11%)

Query: 1   MTEEKKESKSTD-EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQ 59
           M+EEKK+SK ++ EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R            
Sbjct: 1   MSEEKKDSKGSESEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRA----------- 49

Query: 60  NLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            LSM  VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGG
Sbjct: 50  GLSMQVVRFRFDGQPINENDTPTTLEMEEGDTIEVYQQQTGG 91

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051006|ref|XP_001861568.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872445|gb|EDS35828.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 81/102 (79%), Gaps = 12/102 (11%)

Query: 1   MTEEKKESKSTD-EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQ 59
           M+EEKK+SK ++ EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R            
Sbjct: 1   MSEEKKDSKGSESEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRA----------- 49

Query: 60  NLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            LSM  VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGG
Sbjct: 50  GLSMQVVRFRFDGQPINENDTPTTLEMEEGDTIEVYQQQTGG 91

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198848|gb|EFN79624.1| Small ubiquitin-related modifier 3 [Harpegnathos saltator]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%), Gaps = 11/101 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++EKKE+K+  EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 1   MSDEKKETKTESEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRV-----------G 49

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           L+++ VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGG
Sbjct: 50  LAIAAVRFRFDGQPINELDTPTTLEMEEGDTIEVYQQQTGG 90

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022119|ref|XP_002431489.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516777|gb|EEB18751.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 81/104 (77%), Gaps = 15/104 (14%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M +EKK S    EHINLKVLGQDN ++QFKIKK TPL+KLMNAYCER            +
Sbjct: 1   MGDEKKAS----EHINLKVLGQDNAIIQFKIKKHTPLKKLMNAYCERA-----------S 45

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104
           LSM+TVRFRFDGQAINE DTP TLEMEEGDTIE+YQQQTGGF +
Sbjct: 46  LSMATVRFRFDGQAINELDTPETLEMEEGDTIEVYQQQTGGFNK 89

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66549336|ref|XP_623227.1| PREDICTED: small ubiquitin-related modifier 3 isoform 1 [Apis mellifera] gi|383853315|ref|XP_003702168.1| PREDICTED: small ubiquitin-related modifier 3-like [Megachile rotundata]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 81/101 (80%), Gaps = 11/101 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++EKKE+K+  EHINLKVLGQD+ VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 1   MSDEKKETKTESEHINLKVLGQDSAVVQFKIKKHTPLRKLMNAYCDRV-----------G 49

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           L+++ VRFRFDGQ INE DTP+TLEMEEGDTIE+YQQQTGG
Sbjct: 50  LAIAAVRFRFDGQPINELDTPTTLEMEEGDTIEVYQQQTGG 90

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716995|ref|XP_003396975.1| PREDICTED: small ubiquitin-related modifier 3-like [Bombus terrestris] gi|350408736|ref|XP_003488495.1| PREDICTED: small ubiquitin-related modifier 3-like [Bombus impatiens]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 11/102 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++EKKE+K+  EHINLKVLGQD+ VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 1   MSDEKKETKAESEHINLKVLGQDSAVVQFKIKKHTPLRKLMNAYCDRV-----------G 49

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           L+++ VRFRFDG+ INE DTP+TLEMEEGDTIE+YQQQTGG 
Sbjct: 50  LAIAAVRFRFDGEPINELDTPTTLEMEEGDTIEVYQQQTGGL 91

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296408|ref|XP_316822.4| AGAP000852-PA [Anopheles gambiae str. PEST] gi|157015282|gb|EAA12088.5| AGAP000852-PA [Anopheles gambiae str. PEST]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 79/102 (77%), Gaps = 13/102 (12%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M +EKK S+S  EHINLKVLGQDN VVQFKIK+ TPLRKLMNAYC+R             
Sbjct: 1   MADEKKGSES--EHINLKVLGQDNAVVQFKIKRHTPLRKLMNAYCDRA-----------G 47

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           LSM  VRFRFDGQ INE DTP+TL+MEEGDTIE+YQQQTGGF
Sbjct: 48  LSMQVVRFRFDGQPINENDTPTTLDMEEGDTIEVYQQQTGGF 89

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541958|ref|XP_001599647.1| PREDICTED: small ubiquitin-related modifier 3-like [Nasonia vitripennis]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%), Gaps = 12/101 (11%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
           M++EKK+SK + EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             
Sbjct: 1   MSDEKKDSKES-EHINLKVLGQDNGVVQFKIKKHTPLRKLMNAYCDRA-----------G 48

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           L+++ VRFRFDGQ I+E DTPSTLEMEEGDTIE+YQQQTGG
Sbjct: 49  LAIAAVRFRFDGQPIHELDTPSTLEMEEGDTIEVYQQQTGG 89

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0264922	90	smt3 "smt3" [Drosophila melano	0.619	0.866	0.741	1.5e-28
UNIPROTKB|B4DUW4	141	SUMO3 "cDNA FLJ57440, moderate	0.373	0.333	0.617	1e-25
UNIPROTKB|I3LLG3	104	SUMO3 "Uncharacterized protein	0.682	0.826	0.597	1.2e-24
UNIPROTKB|P55854	103	SUMO3 "Small ubiquitin-related	0.658	0.805	0.606	2.6e-24
UNIPROTKB|Q5ZHQ1	94	SUMO3 "Small ubiquitin-related	0.626	0.840	0.633	3.3e-24
UNIPROTKB|Q5ZJM9	95	SUMO2 "Small ubiquitin-related	0.626	0.831	0.633	3.3e-24
UNIPROTKB|G5E5Y5	95	SUMO2 "Small ubiquitin-related	0.626	0.831	0.633	3.3e-24
UNIPROTKB|P61955	95	SUMO2 "Small ubiquitin-related	0.626	0.831	0.633	3.3e-24
UNIPROTKB|Q17QV3	104	SUMO3 "Small ubiquitin-related	0.626	0.759	0.633	3.3e-24
UNIPROTKB|E2RGN5	95	SUMO2 "Uncharacterized protein	0.626	0.831	0.633	3.3e-24

FB|FBgn0264922 smt3 "smt3" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/89 (74%), Positives = 70/89 (78%)

Query:    13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
             EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             LSM  VRFRFDG
Sbjct:    11 EHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRA-----------GLSMQVVRFRFDG 59

Query:    73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             Q INE DTP++LEMEEGDTIE+YQQQTGG
Sbjct:    60 QPINENDTPTSLEMEEGDTIEVYQQQTGG 88

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=IGI;IPI

GO:0006464 "cellular protein modification process" evidence=IGI;IPI

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IGI

GO:0005730 "nucleolus" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IDA

GO:0043406 "positive regulation of MAP kinase activity" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP

GO:0035186 "syncytial blastoderm mitotic cell cycle" evidence=IMP

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0030496 "midbody" evidence=IDA

GO:0016926 "protein desumoylation" evidence=IGI

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IMP

GO:0060997 "dendritic spine morphogenesis" evidence=IMP

UNIPROTKB|B4DUW4 SUMO3 "cDNA FLJ57440, moderately similar to Small ubiquitin-related modifier 3" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query:    59 QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
             + LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG  ++
Sbjct:    88 EGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 134

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|I3LLG3 SUMO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/97 (59%), Positives = 71/97 (73%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    14 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 62

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQL 108
             GQ INE DTP+ LEME+ DTI+++QQQTGG ++  +L
Sbjct:    63 GQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRL 99

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

UNIPROTKB|P55854 SUMO3 "Small ubiquitin-related modifier 3" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 57/94 (60%), Positives = 69/94 (73%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    14 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 62

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
             GQ INE DTP+ LEME+ DTI+++QQQTGG  ++
Sbjct:    63 GQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 96

GO:0016604 "nuclear body" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000776 "kinetochore" evidence=TAS

UNIPROTKB|Q5ZHQ1 SUMO3 "Small ubiquitin-related modifier 3" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    14 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 62

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    63 GQPINEADTPAQLEMEDEDTIDVFQQQTGG 92

GO:0005737 "cytoplasm" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZJM9 SUMO2 "Small ubiquitin-related modifier 2" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|G5E5Y5 SUMO2 "Small ubiquitin-related modifier 2" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61955 SUMO2 "Small ubiquitin-related modifier 2" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|Q17QV3 SUMO3 "Small ubiquitin-related modifier 3" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    14 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 62

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    63 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 92

GO:0005737 "cytoplasm" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|E2RGN5 SUMO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query:    12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
             ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct:    15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63

Query:    72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct:    64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12306	SMT3_YEAST	No assigned EC number	0.4204	0.6031	0.7524	yes	N/A
P55854	SUMO3_HUMAN	No assigned EC number	0.5794	0.7460	0.9126	yes	N/A
P55853	SUMO_CAEEL	No assigned EC number	0.4117	0.7222	1.0	yes	N/A
Q6NV25	SMO3L_DANRE	No assigned EC number	0.5825	0.7142	0.9574	yes	N/A
Q6DK72	SUMO3_XENTR	No assigned EC number	0.5922	0.7142	0.9574	yes	N/A
Q9Z172	SUMO3_MOUSE	No assigned EC number	0.6019	0.7142	0.8181	yes	N/A
Q5XIF4	SUMO3_RAT	No assigned EC number	0.6019	0.7142	0.8181	yes	N/A
P61956	SUMO2_HUMAN	No assigned EC number	0.6057	0.7142	0.9473	yes	N/A
O13351	PMT3_SCHPO	No assigned EC number	0.4742	0.6825	0.7350	yes	N/A
Q17QV3	SUMO3_BOVIN	No assigned EC number	0.6019	0.7142	0.8653	yes	N/A
Q5ZHQ1	SUMO3_CHICK	No assigned EC number	0.5961	0.7222	0.9680	yes	N/A
Q9FLP6	SUMO2_ARATH	No assigned EC number	0.4466	0.7142	0.8737	yes	N/A
Q6DI05	SUMO3_DANRE	No assigned EC number	0.5922	0.7142	0.9574	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
cd01763	87	cd01763, Sumo, Small ubiquitin-related modifier (S	3e-39
COG5227	103	COG5227, SMT3, Ubiquitin-like protein (sentrin) [P	5e-23
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-18
smart00213	72	smart00213, UBQ, Ubiquitin homologues	4e-06

>gnl|CDD|176359 cd01763, Sumo, Small ubiquitin-related modifier (SUMO)

 Score =  126 bits (319), Expect = 3e-39
 Identities = 53/98 (54%), Positives = 62/98 (63%), Gaps = 11/98 (11%)

Query: 4   EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM 63
           EK       EHINLKV GQD N V FKIK+ TPL+KLM AYC+R           Q LSM
Sbjct: 1   EKSGKGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-----------QGLSM 49

Query: 64  STVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           ++VRF FDGQ I +  TP  L ME+GD IE+  +QTGG
Sbjct: 50  NSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases. Length = 87

>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

 Score = 85.7 bits (212), Expect = 5e-23
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)

Query: 2   TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
           T E    K   +HINLKV+ QD   + FKIKK T  +KLM+A+  R           Q  
Sbjct: 12  TNENPLVKPITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRR-----------QGK 60

Query: 62  SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           +MS++RF FDG+ I+   TP  L+ME+ D IE   +Q GG
Sbjct: 61  NMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100

Length = 103

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-18
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)

Query: 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFDGQ 73
          I +K+ G+D   V  K+K  T L KL+NAY ++           + +     VR  FDG+
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKK-----------RGIPADQQVRLIFDGE 49

Query: 74 AINEQDTPSTLEMEEGDTIEIY 95
           ++  DT +  ++E+GDTI++ 
Sbjct: 50 RLDPNDTVADYDIEDGDTIDVV 71

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 11/81 (13%)

Query: 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA 74
          I L V   D   +  ++K    + +L     E              +     R  + G+ 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAEL-----------TGIPPEQQRLIYKGKV 49

Query: 75 INEQDTPSTLEMEEGDTIEIY 95
          + +  T +   +++G TI + 
Sbjct: 50 LEDDRTLADYGIQDGSTIHLV 70

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG1769|consensus	99		99.97
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	99.94
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.93
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.86
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.49
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.28
PTZ00044	76	ubiquitin; Provisional	99.26
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.2
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.17
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.16
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.16
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.15
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.15
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.14
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.08
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.08
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.06
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.0
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	98.98
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	98.94
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	98.93
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	98.91
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	98.9
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.87
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.77
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	98.67
KOG0005|consensus	70		98.55
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.49
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	98.42
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	98.4
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	98.32
KOG0010|consensus	493		98.22
KOG0003|consensus	128		98.18
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.04
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	97.96
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	97.84
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	97.81
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.66
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.63
PLN02560	308	enoyl-CoA reductase	97.6
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	97.58
KOG0011|consensus	340		97.5
KOG0004|consensus	156		97.36
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.28
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.08
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.07
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.97
KOG0001|consensus	75		96.85
KOG4248|consensus	1143		96.77
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	96.74
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	95.77
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.62
PRK08364	70	sulfur carrier protein ThiS; Provisional	95.39
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	94.97
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	94.88
KOG0006|consensus	446		94.8
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.59
COG5417	81	Uncharacterized small protein [Function unknown]	94.22
PRK06437	67	hypothetical protein; Provisional	94.16
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	93.51
PRK07440	70	hypothetical protein; Provisional	93.47
KOG3493|consensus	73		93.36
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	93.23
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	92.83
PRK06488	65	sulfur carrier protein ThiS; Validated	92.71
PRK05659	66	sulfur carrier protein ThiS; Validated	92.28
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	92.07
PRK06944	65	sulfur carrier protein ThiS; Provisional	91.97
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	91.75
smart00455	70	RBD Raf-like Ras-binding domain.	91.57
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	90.91
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.49
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	90.45
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	90.39
PRK08053	66	sulfur carrier protein ThiS; Provisional	90.17
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	90.03
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	89.96
PRK06083	84	sulfur carrier protein ThiS; Provisional	89.94
PRK05863	65	sulfur carrier protein ThiS; Provisional	89.8
PF13019	162	Telomere_Sde2: Telomere stability and silencing	89.4
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	89.28
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	88.76
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	88.55
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	87.3
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	86.8
PRK07696	67	sulfur carrier protein ThiS; Provisional	86.38
PF08825	84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	85.44
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	83.71
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	83.44
KOG3439|consensus	116		83.15
PF12754	309	Blt1: Cell-cycle control medial ring component; In	82.6
PF06234	85	TmoB: Toluene-4-monooxygenase system protein B (Tm	81.03
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	80.84
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	80.7
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	80.11

>KOG1769|consensus

Probab=99.97  E-value=4.6e-31  Score=185.83  Aligned_cols=81  Identities=68%  Similarity=1.068  Sum_probs=79.3

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +.+|+|||+++++.+++|+||++|||+|||++||++           .|++.+++||+|||.||.+++||++|+|||||+
T Consensus        18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r-----------~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~   86 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCER-----------QGLSMNSLRFLFDGQRIRETHTPADLEMEDGDE   86 (99)
T ss_pred             cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHH-----------cCCccceEEEEECCcCcCCCCChhhhCCcCCcE
Confidence            589999999999999999999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCCCc
Q psy4523          92 IEIYQQQTGGFK  103 (126)
Q Consensus        92 Idv~~~Q~GG~~  103 (126)
                      |+|+..|+||.+
T Consensus        87 Iev~~~q~gG~~   98 (99)
T KOG1769|consen   87 IEVVQEQTGGFG   98 (99)
T ss_pred             EEEEeecccCCC
Confidence            999999999975

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.8e-27  Score=165.07  Aligned_cols=83  Identities=47%  Similarity=0.745  Sum_probs=79.6

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ...++|.|+|.+|+|.+++|+||.+|+|+|||++||.+           .|...+++||+|||+||..++||.+|+|||+
T Consensus        20 p~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~r-----------qGK~m~slRfL~dG~rI~~dqTP~dldmEdn   88 (103)
T COG5227          20 PITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRR-----------QGKNMSSLRFLFDGKRIDLDQTPGDLDMEDN   88 (103)
T ss_pred             ccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHH-----------hCcCcceeEEEEcceecCCCCChhhcCCccc
Confidence            34568999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCCc
Q psy4523          90 DTIEIYQQQTGGFK  103 (126)
Q Consensus        90 D~Idv~~~Q~GG~~  103 (126)
                      |+|+++.+|+||+-
T Consensus        89 d~iEav~eQvGG~t  102 (103)
T COG5227          89 DEIEAVTEQVGGAT  102 (103)
T ss_pred             hHHHHHHHHhcCcc
Confidence            99999999999974

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.93  E-value=2.4e-25  Score=152.21  Aligned_cols=86  Identities=60%  Similarity=0.949  Sum_probs=82.4

Q ss_pred             ccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcccc
Q psy4523           5 KKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTL   84 (126)
Q Consensus         5 ~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL   84 (126)
                      +.+..+.+.+|+|+|++++|..+.|+|+++++|++||++||++           .|+++++++|+|+|++|.+++||++|
T Consensus         2 ~~~~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-----------~gi~~~~~rf~f~G~~L~~~~T~~~l   70 (87)
T cd01763           2 KSGKGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-----------QGLSMNSVRFLFDGQRIRDNQTPDDL   70 (87)
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-----------hCCCccceEEEECCeECCCCCCHHHc
Confidence            3455788999999999999999999999999999999999999           99999999999999999999999999


Q ss_pred             CCCCCCEEEEEeeecCC
Q psy4523          85 EMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        85 ~MeDGD~Idv~~~Q~GG  101 (126)
                      +|+|||+|+|+++|.||
T Consensus        71 ~m~d~d~I~v~l~l~GG   87 (87)
T cd01763          71 GMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCCCCCEEEEEEecccC
Confidence            99999999999999998

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.86  E-value=1.6e-21  Score=127.30  Aligned_cols=71  Identities=38%  Similarity=0.762  Sum_probs=66.4

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      |+|+|++++|..+.|+|++++||++|+++||++           .|++. ++++|.|||++|++++||++++|+|||+|+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~-----------~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Id   69 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEK-----------KGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTID   69 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHH-----------HTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-----------hCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEE
Confidence            789999999999999999999999999999999           99999 999999999999999999999999999999


Q ss_pred             EEe
Q psy4523          94 IYQ   96 (126)
Q Consensus        94 v~~   96 (126)
                      |.+
T Consensus        70 v~I   72 (72)
T PF11976_consen   70 VII   72 (72)
T ss_dssp             EE-
T ss_pred             EEC
Confidence            975

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.49  E-value=2.5e-13  Score=88.50  Aligned_cols=76  Identities=16%  Similarity=0.368  Sum_probs=72.3

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.++.+++.|++.++++           .|++++.++|.|+|+.|.++.|.++++++||++|++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l   69 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHL   69 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHh-----------hCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEE
Confidence            467888888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .+++.||
T Consensus        70 ~~~~~gg   76 (76)
T cd01806          70 VLALRGG   76 (76)
T ss_pred             EEEccCC
Confidence            9999887

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.28  E-value=3.8e-11  Score=78.16  Aligned_cols=76  Identities=12%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|++.+|+.+.+.+.++.++..|++.++++           .|++++.++|.|+|+.|.++.|.+++++++|++|++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l   69 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHH-----------hCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence            357777788999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .++..||
T Consensus        70 ~~~~~gg   76 (76)
T cd01803          70 VLRLRGG   76 (76)
T ss_pred             EEEccCC
Confidence            9999987

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>PTZ00044 ubiquitin; Provisional

Probab=99.26  E-value=5.6e-11  Score=78.00  Aligned_cols=76  Identities=16%  Similarity=0.348  Sum_probs=71.7

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.+.+++++..|+...+++           .|++++.+++.|+|+.+.++.|.+++++++|++|++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l   69 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEK-----------EGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHM   69 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEE
Confidence            357778888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .+...||
T Consensus        70 ~~~~~gg   76 (76)
T PTZ00044         70 VLQLRGG   76 (76)
T ss_pred             EEEccCC
Confidence            9998887

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.20  E-value=1.3e-10  Score=76.62  Aligned_cols=74  Identities=12%  Similarity=0.302  Sum_probs=69.5

Q ss_pred             EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      |.|++..|+.+.+.|.++.++..|++..++.           .|+++..+++.|+|+.|.++.|..++++++|++|++.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-----------ERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            3566778998899999999999999999999           99999999999999999999999999999999999999


Q ss_pred             eecCC
Q psy4523          97 QQTGG  101 (126)
Q Consensus        97 ~Q~GG  101 (126)
                      ...||
T Consensus        70 ~l~gg   74 (74)
T cd01810          70 RLRGG   74 (74)
T ss_pred             EccCC
Confidence            98887

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.17  E-value=2.7e-10  Score=73.38  Aligned_cols=71  Identities=21%  Similarity=0.428  Sum_probs=66.8

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |+|.|+..+|+.+.+.+.++.++..|++.++++           .|++++..++.|+|+.|.++.|.+++++.+|++|++
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l   69 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEE-----------VGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHL   69 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEE
Confidence            578888888999999999999999999999999           999999999999999999999999999999999988


Q ss_pred             Ee
Q psy4523          95 YQ   96 (126)
Q Consensus        95 ~~   96 (126)
                      ..
T Consensus        70 ~~   71 (72)
T cd01809          70 VK   71 (72)
T ss_pred             Ee
Confidence            65

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.16  E-value=3.5e-10  Score=79.94  Aligned_cols=78  Identities=8%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.+.|.|+...|+.+.+.|.+++++..|++..+++           .|++.+..+++|.|+.|.++.|.+++++++|++|
T Consensus        26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL   94 (103)
T cd01802          26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-----------EGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTL   94 (103)
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCChHHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence            36889999988999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      ++.+...||
T Consensus        95 ~l~~~l~GG  103 (103)
T cd01802          95 KLVLAMRGG  103 (103)
T ss_pred             EEEEecCCC
Confidence            999999887

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.16  E-value=3.4e-10  Score=74.59  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|++  ++...+.|.+++++..|+...+++           .|++++..+++|.|+.|.++.|.++++++++++|++.
T Consensus         2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-----------~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~   68 (74)
T cd01793           2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-----------EGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA   68 (74)
T ss_pred             EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-----------hCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence            466665  356789999999999999999999           9999999999999999999999999999999999999


Q ss_pred             eeecCC
Q psy4523          96 QQQTGG  101 (126)
Q Consensus        96 ~~Q~GG  101 (126)
                      ++..||
T Consensus        69 ~~l~GG   74 (74)
T cd01793          69 GRLLGG   74 (74)
T ss_pred             EecCCC
Confidence            999887

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.15  E-value=3.4e-10  Score=74.50  Aligned_cols=72  Identities=14%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|+..+|+.+.+.|.++++++.|++..+++           .|++++..+++|+|+.|.++.|.+++++.+|++|.++
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-----------~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~   70 (74)
T cd01807           2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-----------LNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLV   70 (74)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence            56677778999999999999999999999999           9999999999999999999999999999999999998


Q ss_pred             eee
Q psy4523          96 QQQ   98 (126)
Q Consensus        96 ~~Q   98 (126)
                      +++
T Consensus        71 ~~~   73 (74)
T cd01807          71 VRP   73 (74)
T ss_pred             EcC
Confidence            764

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.15  E-value=4.3e-10  Score=75.28  Aligned_cols=76  Identities=9%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      ++|.|+...|+...+.+.++.++..|++..+++           .|++++.+||.|.|+.|.++ |.++++++||++|.+
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l   69 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQR-----------LKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTL   69 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHH-----------hCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEE
Confidence            577888888998899999999999999999999           89999999999999999988 999999999999999


Q ss_pred             EeeecCCC
Q psy4523          95 YQQQTGGF  102 (126)
Q Consensus        95 ~~~Q~GG~  102 (126)
                      +..+.||.
T Consensus        70 ~~~~~~~~   77 (78)
T cd01804          70 VPTVEAGL   77 (78)
T ss_pred             EeeccccC
Confidence            99998884

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.14  E-value=3.8e-10  Score=72.52  Aligned_cols=67  Identities=13%  Similarity=0.328  Sum_probs=63.4

Q ss_pred             eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523          21 GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ   98 (126)
Q Consensus        21 ~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q   98 (126)
                      ..+|+.+.+.|.+++++..|++..++.           .|++++.++|.|+|+.|.++.|..++++.+|++|.+.+++
T Consensus         2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    2 TLSGKTFTLEVDPDDTVADLKQKIAEE-----------TGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             ETTSEEEEEEEETTSBHHHHHHHHHHH-----------HTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCcEEEEEECCCCCHHHhhhhcccc-----------cccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            356788899999999999999999999           9999999999999999999999999999999999999876

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.08  E-value=1.3e-09  Score=71.57  Aligned_cols=73  Identities=8%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|.|+..+|..+.+.+.++++...|++.++++           .|+  +++.++++|+|+.|.++.|.+++++.+|++|
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~-----------~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i   69 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEE-----------KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFV   69 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-----------hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEE
Confidence            356777778888899999999999999999999           898  8999999999999999999999999999999


Q ss_pred             EEEeee
Q psy4523          93 EIYQQQ   98 (126)
Q Consensus        93 dv~~~Q   98 (126)
                      .+++.+
T Consensus        70 ~~~~~~   75 (77)
T cd01805          70 VVMVSK   75 (77)
T ss_pred             EEEEec
Confidence            998875

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.08  E-value=9.9e-10  Score=73.21  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|++..|..+.+.+.++.++..|++..+++           .|++++.+||+|.|+.|.++.|.+++++.+|.+|++
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~-----------~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l   70 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-----------TGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLEL   70 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEE
Confidence            688999888999999999999999999999999           999999999999999999999999999999999998


Q ss_pred             Ee
Q psy4523          95 YQ   96 (126)
Q Consensus        95 ~~   96 (126)
                      +.
T Consensus        71 ~~   72 (73)
T cd01791          71 YY   72 (73)
T ss_pred             Ee
Confidence            75

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.06  E-value=8.5e-10  Score=71.11  Aligned_cols=70  Identities=11%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |+|.|+.. |+...+.+.++.++..|++..++.           .|++++.++++|+|+.+.++.|..++++.+|++|.+
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v   68 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-----------TGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML   68 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-----------hCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEE
Confidence            57778775 777789999999999999999999           999999999999999999999999999999999988


Q ss_pred             Ee
Q psy4523          95 YQ   96 (126)
Q Consensus        95 ~~   96 (126)
                      +.
T Consensus        69 ~~   70 (71)
T cd01812          69 LE   70 (71)
T ss_pred             ec
Confidence            64

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.00  E-value=2.6e-09  Score=69.43  Aligned_cols=68  Identities=13%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      .|+...|..+.+.+.++++++.|++..+++           .|++.+.++|+|.|+.|.++.|.+++++++|.+|++..
T Consensus         2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~   69 (70)
T cd01798           2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKR-----------QGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR   69 (70)
T ss_pred             EEEcCCCCEEEEEECCCChHHHHHHHHHHH-----------HCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            456677899999999999999999999999           99999999999999999999999999999999998864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=98.98  E-value=3.9e-09  Score=70.93  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=66.2

Q ss_pred             EEEEEeccCCE-EEEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          16 NLKVLGQDNNV-VQFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        16 ~Ikv~~~~g~~-v~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|.|+...|.. +.+. +.++++++.|++..+++           .|++++..|++|.|+.|.++.|.+++++++|++|.
T Consensus         2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-----------~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~   70 (78)
T cd01797           2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-----------FNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQ   70 (78)
T ss_pred             EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-----------hCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEE
Confidence            56777778887 4674 89999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeeec
Q psy4523          94 IYQQQT   99 (126)
Q Consensus        94 v~~~Q~   99 (126)
                      +.++|-
T Consensus        71 l~~~~~   76 (78)
T cd01797          71 LLVRQD   76 (78)
T ss_pred             EEEecC
Confidence            998864

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=98.94  E-value=5.8e-09  Score=69.82  Aligned_cols=73  Identities=12%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEE--EECCeecCCCCCccccCCCCCCEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRF--RFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF--~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      |.|.|+...|+.+.+.+.++.+...|++..++.           .|++++.+||  .|+|+.|.++.|.+++++++|++|
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~-----------~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l   71 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQK-----------IGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTV   71 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEE
Confidence            778888888999999999999999999999999           8999999999  889999999999999999999999


Q ss_pred             EEEeee
Q psy4523          93 EIYQQQ   98 (126)
Q Consensus        93 dv~~~Q   98 (126)
                      .++++.
T Consensus        72 ~l~~~~   77 (80)
T cd01792          72 LLVVQN   77 (80)
T ss_pred             EEEEEc
Confidence            998873

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=98.93  E-value=6.4e-09  Score=69.00  Aligned_cols=70  Identities=16%  Similarity=0.401  Sum_probs=65.7

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF  102 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~  102 (126)
                      +|..+.+.+.+++++..|++.....           .|++++..+++|.|+.+.++.|.+++++.+|++|.+++.+.||.
T Consensus         6 ~g~~~~l~v~~~~TV~~lK~~i~~~-----------~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           6 NGQMLNFTLQLSDPVSVLKVKIHEE-----------TGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             CCeEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence            4677789999999999999999999           99999999999999999999999999999999999999999875


Q ss_pred             c
Q psy4523         103 K  103 (126)
Q Consensus       103 ~  103 (126)
                      .
T Consensus        75 ~   75 (76)
T cd01800          75 K   75 (76)
T ss_pred             C
Confidence            3

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=98.91  E-value=8.2e-09  Score=68.06  Aligned_cols=69  Identities=12%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      +||+...|+.+.+.+.+++++..|+...++.           .|+++...+++|.|+.|.++.|.+++++++|.+|++.+
T Consensus         1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-----------~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-----------EGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            3566678999999999999999999999999           99999999999999999999999999999999999976

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=98.90  E-value=1.2e-08  Score=66.64  Aligned_cols=71  Identities=14%  Similarity=0.323  Sum_probs=63.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |+|.|+...|. ..+.|.++.+...|++..+++           .|++...+++.|+|+.|.++.|.+++++++|++|++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~-----------~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l   68 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKK-----------FKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHL   68 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHH-----------hCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEE
Confidence            35666667776 489999999999999999999           899999999999999999999999999999999998


Q ss_pred             Eee
Q psy4523          95 YQQ   97 (126)
Q Consensus        95 ~~~   97 (126)
                      .++
T Consensus        69 ~~~   71 (71)
T cd01808          69 VIK   71 (71)
T ss_pred             EEC
Confidence            763

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>smart00213 UBQ Ubiquitin homologues

Probab=98.87  E-value=1.3e-08  Score=63.41  Aligned_cols=64  Identities=17%  Similarity=0.405  Sum_probs=58.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      |.|.|++.+ ....+.|.+++++..|+..++++           .|++++.++++|+|+.|.++.|..++++.+|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~-----------~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAEL-----------TGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            356777766 56789999999999999999999           99999999999999999999999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.77  E-value=5.5e-08  Score=61.23  Aligned_cols=67  Identities=12%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             EEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          19 VLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        19 v~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      |+..+|....+.+.++++++.|++.++++           .|++++.++|.|+|+.+.++.|..++++.+|+.|.+..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~-----------~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAK-----------EGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            44456888899999999999999999999           89999999999999999999999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=98.67  E-value=1.3e-07  Score=62.13  Aligned_cols=66  Identities=9%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             EEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCCCCCCEEEEE
Q psy4523          19 VLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        19 v~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~MeDGD~Idv~   95 (126)
                      |+.. .|+.+.+.|.++.++..|+...+++           .|++.+..+++|+|+.|.++ .|.+++++++|++|.+.
T Consensus         3 v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-----------~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           3 VYTARSETTFSLDVDPDLELENFKALCEAE-----------SGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             EEECCCCCEEEEEECCcCCHHHHHHHHHHH-----------hCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            3444 5777889999999999999999999           99999999999999999887 57899999999998763

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005|consensus

Probab=98.55  E-value=1e-07  Score=62.55  Aligned_cols=68  Identities=13%  Similarity=0.319  Sum_probs=64.0

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      .|+|+...|+++.+.|.+++++.++++...+.           .|+++...|++|-|+++.++.|++++.++-|.+++.
T Consensus         2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-----------eGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHl   69 (70)
T KOG0005|consen    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHL   69 (70)
T ss_pred             eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-----------cCCCchhhhhhhccccccccccHHHhhhccceeEee
Confidence            47788888999999999999999999999999           999999999999999999999999999999998764

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.49  E-value=5.8e-07  Score=76.30  Aligned_cols=76  Identities=9%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc---CccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN---LSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g---l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +.|.|++.+|..+.+.|..+.++..||+..++.           .|   ++.+.++|+|.|+.|.++.|..++++++||+
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~-----------~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~   69 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAE-----------QGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDF   69 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHh-----------hCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCE
Confidence            357777778898899999999999999999999           87   8899999999999999999999999999999


Q ss_pred             EEEEeeecCC
Q psy4523          92 IEIYQQQTGG  101 (126)
Q Consensus        92 Idv~~~Q~GG  101 (126)
                      |.+++.....
T Consensus        70 Ivvmv~k~k~   79 (378)
T TIGR00601        70 VVVMVSKPKT   79 (378)
T ss_pred             EEEEeccCCC
Confidence            9999886543

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=98.42  E-value=1.8e-06  Score=57.77  Aligned_cols=62  Identities=15%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC-CCCCccccCCC-CCCEEEEEe
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN-EQDTPSTLEME-EGDTIEIYQ   96 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~-~~~TP~dL~Me-DGD~Idv~~   96 (126)
                      .|..+.+.|.++.++..|+...+++           .|++++..|+ |+|+++. ++.|.++++++ +||++.+++
T Consensus        11 ~~~t~~l~v~~~~TV~~lK~kI~~~-----------~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799          11 HTVTIWLTVRPDMTVAQLKDKVFLD-----------YGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            4677889999999999999999999           9999999999 9999996 66999999999 889998875

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=98.40  E-value=1.7e-06  Score=58.99  Aligned_cols=71  Identities=7%  Similarity=0.065  Sum_probs=61.7

Q ss_pred             cEEEEEEeccCCEEEEEe--cCCCcHHHHHHHHHHHhhhhhhhhhhhcc--CccceeEEEECCeecCCCCCccccC--CC
Q psy4523          14 HINLKVLGQDNNVVQFKI--KKGTPLRKLMNAYCERCVSILSVLITLQN--LSMSTVRFRFDGQAINEQDTPSTLE--ME   87 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkI--k~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~~rF~fdG~rL~~~~TP~dL~--Me   87 (126)
                      .|+|.|++.++....|.|  .++.+.+.|++..++.           .+  .+++..||+|.|+-|.+++|.+++.  +.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~-----------~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~   69 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRV-----------YPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQD   69 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHh-----------cCCCCChhHeEEEEcCeeccchhhHHHHhhccc
Confidence            378999998888866666  8999999999999988           54  3468999999999999999999996  99


Q ss_pred             CCCEEEEE
Q psy4523          88 EGDTIEIY   95 (126)
Q Consensus        88 DGD~Idv~   95 (126)
                      +|.+|+..
T Consensus        70 ~~~tiHLV   77 (79)
T cd01790          70 EYHMVHLV   77 (79)
T ss_pred             CCceEEEE
Confidence            99999875

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=98.32  E-value=3.9e-06  Score=55.75  Aligned_cols=68  Identities=9%  Similarity=0.021  Sum_probs=60.0

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE---CCeecCCCCCccccCCCCCCEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF---DGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f---dG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +|.|.. .|....+.+..++++..|++..++.           .|++++..+++|   .|+.+.++.|..++++.+|+.|
T Consensus         2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-----------tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i   69 (74)
T cd01813           2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-----------TGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKI   69 (74)
T ss_pred             EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-----------HCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEE
Confidence            344443 4677789999999999999999999           999999999996   8999999999999999999998


Q ss_pred             EEE
Q psy4523          93 EIY   95 (126)
Q Consensus        93 dv~   95 (126)
                      .++
T Consensus        70 ~lm   72 (74)
T cd01813          70 MMM   72 (74)
T ss_pred             EEE
Confidence            775

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0010|consensus

Probab=98.22  E-value=2.9e-06  Score=74.00  Aligned_cols=74  Identities=12%  Similarity=0.275  Sum_probs=68.8

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|.|+|++.+. +..|.|..+..++.||+..+.+           .+.+.+.++++|.|+.|++++|...+++.||-+|+
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~-----------f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvH   82 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQR-----------FGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVH   82 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHh-----------cCCChhHeeeeecCccccChhhHHHcCCCCCcEEE
Confidence            58899998766 6789999999999999999999           88999999999999999999999999999999999


Q ss_pred             EEeeec
Q psy4523          94 IYQQQT   99 (126)
Q Consensus        94 v~~~Q~   99 (126)
                      ++++..
T Consensus        83 LVik~~   88 (493)
T KOG0010|consen   83 LVIKSQ   88 (493)
T ss_pred             EEeccC
Confidence            998743

>KOG0003|consensus

Probab=98.18  E-value=4.3e-07  Score=65.76  Aligned_cols=75  Identities=11%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523          18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      .++.-.|..+++.+.++.++..++....+.           .|++++..++.|+|+.|.+.-|.++++|.-.|+|.++.+
T Consensus         4 ~~~~~~GKT~~le~EpS~ti~~vKA~i~~~-----------~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r   72 (128)
T KOG0003|consen    4 FVKTLTGKTITLEVEPSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (128)
T ss_pred             EEEEeeCceEEEEecccchHHHHHHHhccc-----------cCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence            344456899999999999999999999999           999999999999999999999999999999999999999


Q ss_pred             ecCCCc
Q psy4523          98 QTGGFK  103 (126)
Q Consensus        98 Q~GG~~  103 (126)
                      ..||+-
T Consensus        73 L~GG~i   78 (128)
T KOG0003|consen   73 LRGGII   78 (128)
T ss_pred             HhcCCC
Confidence            999954

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.04  E-value=4.6e-05  Score=44.12  Aligned_cols=63  Identities=17%  Similarity=0.354  Sum_probs=57.9

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      ++....+.+.+.++++.+++..+++           .|.+++.++|.++|..+....+..+..+.+|++|.+..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKK-----------LGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH-----------HCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            6788889999999999999999999           88999999999999999999888899999999998864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=97.96  E-value=1.9e-05  Score=53.44  Aligned_cols=52  Identities=17%  Similarity=0.299  Sum_probs=46.8

Q ss_pred             CCcHHHHHHHHHHHhhhhhhhhhhhc--cC-ccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          34 GTPLRKLMNAYCERCVSILSVLITLQ--NL-SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        34 tt~l~kL~~~y~~~~~~~~~~~~~~~--gl-~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      +++...|++..+++           .  |+ +++++|++|.|+.|.++.|.+++++.+|++|.++.
T Consensus        20 ~~TV~~LK~kI~~~-----------~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          20 GYQVSTLKQLIAAQ-----------LPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCcHHHHHHHHHHh-----------hccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            67899999999999           5  35 48889999999999999999999999999998874

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=97.84  E-value=0.00016  Score=48.99  Aligned_cols=71  Identities=15%  Similarity=0.320  Sum_probs=58.4

Q ss_pred             EEEEEEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEE-EECCe-----ec-CCCCCccccCC
Q psy4523          15 INLKVLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRF-RFDGQ-----AI-NEQDTPSTLEM   86 (126)
Q Consensus        15 I~Ikv~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF-~fdG~-----rL-~~~~TP~dL~M   86 (126)
                      |+|.|.+. .......++.++.++..|++.-...           .|++++..++ +|+|.     .+ .++.+..++++
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-----------~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~   70 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-----------VGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPV   70 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-----------HCCCccceEEEEEcCCCCeEeecCCCccEeeeccC
Confidence            44555543 2455678899999999999999999           9999999999 58888     35 57789999999


Q ss_pred             CCCCEEEEEe
Q psy4523          87 EEGDTIEIYQ   96 (126)
Q Consensus        87 eDGD~Idv~~   96 (126)
                      +||.+|+|.-
T Consensus        71 ~dg~~IhVvD   80 (84)
T cd01789          71 DDGCRIHVID   80 (84)
T ss_pred             CCCCEEEEEe
Confidence            9999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=97.81  E-value=4.9e-05  Score=55.11  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=65.6

Q ss_pred             CcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccC----
Q psy4523          13 EHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLE----   85 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~----   85 (126)
                      +.|.|+++-.||.-+ -|++.++++...|++...+.+.+      .+.|.+  .+.++|+|.|+.|.++.|.++++    
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~------~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g   76 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPK------DKEVGPKTVNEVKLISAGKILENSKTVGECRSPVG   76 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhccc------ccccCCCCHHHeEEEeCCeecCCCCcHHHhCCccc
Confidence            478999998999776 69999999999999999977310      114444  88999999999999999999999    


Q ss_pred             --CCCCCEEEEEeeecC
Q psy4523          86 --MEEGDTIEIYQQQTG  100 (126)
Q Consensus        86 --MeDGD~Idv~~~Q~G  100 (126)
                        ..-+-+++|.++...
T Consensus        77 ~~~~~~~TmHvvlr~~~   93 (113)
T cd01814          77 DIAGGVITMHVVVQPPL   93 (113)
T ss_pred             ccCCCceEEEEEecCCC
Confidence              555567777766443

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.66  E-value=0.00011  Score=49.80  Aligned_cols=70  Identities=19%  Similarity=0.327  Sum_probs=42.6

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---Ceec--CCCCCccccCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQAI--NEQDTPSTLEME   87 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~rL--~~~~TP~dL~Me   87 (126)
                      +.|-|+|++.+|- ..+.+.++.++..|++...+.           .+++.+.+.+..+   ...+  ..+.|.++|++.
T Consensus         3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~-----------l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglk   70 (80)
T PF11543_consen    3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQ-----------LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLK   70 (80)
T ss_dssp             ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHH-----------S---TTT---BSSGGGGGCSSS-TT-CCCCT---
T ss_pred             ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHH-----------cCCCCcceEEEecCCCCcccccCCcCCHHHcCCC
Confidence            4688999999984 356788999999999999999           7777776665443   3455  468999999999


Q ss_pred             CCCEEEE
Q psy4523          88 EGDTIEI   94 (126)
Q Consensus        88 DGD~Idv   94 (126)
                      .||.|-+
T Consensus        71 HGdmlyL   77 (80)
T PF11543_consen   71 HGDMLYL   77 (80)
T ss_dssp             TT-EEE-
T ss_pred             CccEEEE
Confidence            9998854

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.63  E-value=0.00082  Score=48.25  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=57.2

Q ss_pred             cEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHh-hhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          14 HINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERC-VSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        14 ~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~-~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      .|+|+++-.+|. ...|...++++...|++.....| ..|..     ...+++.+|++|.|+-|.++.|..++.+--|+.
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~-----~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~   76 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEE-----RPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET   76 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSS-----TT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCcccccc-----CCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence            688999988998 66899999999999999999887 32222     344678999999999999999999999999985

>PLN02560 enoyl-CoA reductase

Probab=97.60  E-value=0.00028  Score=58.53  Aligned_cols=69  Identities=13%  Similarity=0.300  Sum_probs=58.3

Q ss_pred             EEEEEeccCCEE---EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEEEC---C----eecCCCCCcccc
Q psy4523          16 NLKVLGQDNNVV---QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFRFD---G----QAINEQDTPSTL   84 (126)
Q Consensus        16 ~Ikv~~~~g~~v---~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~fd---G----~rL~~~~TP~dL   84 (126)
                      +|.|+..+|+.+   .+.+.++++++.|+++++++           .+. +++.+|++++   |    ..|.++.|..++
T Consensus         2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----------~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~   70 (308)
T PLN02560          2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----------KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY   70 (308)
T ss_pred             EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----------cCCCChhheEEEEecCCCCcCccccCCCCCHHhc
Confidence            455666677776   68999999999999999999           776 7899999983   4    378889999999


Q ss_pred             CCCCCCEEEEE
Q psy4523          85 EMEEGDTIEIY   95 (126)
Q Consensus        85 ~MeDGD~Idv~   95 (126)
                      +++||++|.|.
T Consensus        71 gv~~gstLy~k   81 (308)
T PLN02560         71 GLGDGGTVVFK   81 (308)
T ss_pred             CCCCCceEEEE
Confidence            99999998876

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=97.58  E-value=0.00058  Score=46.04  Aligned_cols=71  Identities=14%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             EEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC----Ceec----CCCCCcccc
Q psy4523          15 INLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD----GQAI----NEQDTPSTL   84 (126)
Q Consensus        15 I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd----G~rL----~~~~TP~dL   84 (126)
                      |.|.|.+...  ...+.++.++.++..|+......           .|++++.+++.+.    |..+    .++.|..++
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~-----------~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y   70 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKL-----------TGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSY   70 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHH-----------HTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHH
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHH-----------hCCCcccEEEEEEecCCCccccccCCCccEeecC
Confidence            6777777554  47889999999999999999999           9999998888774    3332    467899999


Q ss_pred             CCCCCCEEEEEe
Q psy4523          85 EMEEGDTIEIYQ   96 (126)
Q Consensus        85 ~MeDGD~Idv~~   96 (126)
                      +++||++|.|.-
T Consensus        71 ~~~dg~~i~V~D   82 (87)
T PF14560_consen   71 GIKDGMRIHVVD   82 (87)
T ss_dssp             T-STTEEEEEEE
T ss_pred             CCCCCCEEEEEe
Confidence            999999999874

>KOG0011|consensus

Probab=97.50  E-value=0.00057  Score=57.47  Aligned_cols=74  Identities=9%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc--CccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN--LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|.|+...+..+.+.+++++++..+|......           .|  .+....+++|+|+-|.++.|..++++.+++.|-
T Consensus         2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~-----------~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiV   70 (340)
T KOG0011|consen    2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETE-----------KGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIV   70 (340)
T ss_pred             eeEeeeccCceeEeecCcchhHHHHHHHHHhc-----------cCCCCchhhheeeecceeccCCcchhhhccccCceEE
Confidence            45556666788899999999999999999998           78  778899999999999999999999999999999


Q ss_pred             EEeeecC
Q psy4523          94 IYQQQTG  100 (126)
Q Consensus        94 v~~~Q~G  100 (126)
                      |++.+..
T Consensus        71 vMlsK~k   77 (340)
T KOG0011|consen   71 VMLSKDK   77 (340)
T ss_pred             EEEecCc
Confidence            9999887

>KOG0004|consensus

Probab=97.36  E-value=0.00026  Score=53.89  Aligned_cols=79  Identities=13%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|+...|..+++.+.+..++..++....+.           .|+++++.|++|-|++|.+.-|..|+++.-..+|.++
T Consensus         2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~-----------egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~   70 (156)
T KOG0004|consen    2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV   70 (156)
T ss_pred             ccchhhccccceeeeecccccHHHHHHhhhcc-----------cCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence            35666667888999999999999999999999           9999999999999999999999999999999999999


Q ss_pred             eeecCCCcCC
Q psy4523          96 QQQTGGFKQT  105 (126)
Q Consensus        96 ~~Q~GG~~~~  105 (126)
                      +...||..-+
T Consensus        71 l~l~Gg~kkr   80 (156)
T KOG0004|consen   71 LRLRGGAKKR   80 (156)
T ss_pred             EEecCCcccc
Confidence            9999998754

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.28  E-value=0.0012  Score=43.60  Aligned_cols=53  Identities=17%  Similarity=0.308  Sum_probs=45.1

Q ss_pred             cCCCcHHHHHHHHHHHhhhhhhhhhhhcc-CccceeEEE--ECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          32 KKGTPLRKLMNAYCERCVSILSVLITLQN-LSMSTVRFR--FDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        32 k~tt~l~kL~~~y~~~~~~~~~~~~~~~g-l~~~~~rF~--fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .++.++..|++++++.           .+ .+++.+|+.  +.|..|.++.|..++++.||.+|.|.
T Consensus        20 ~~~aTV~dlk~~i~~~-----------~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvK   75 (77)
T cd01801          20 SGDATIADLKKLIAKS-----------SPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVR   75 (77)
T ss_pred             CCCccHHHHHHHHHHH-----------cCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEe
Confidence            4778999999999988           54 467777775  78999999999999999999998763

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.08  E-value=0.0025  Score=41.83  Aligned_cols=63  Identities=11%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             EeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          20 LGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        20 ~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .+.+++...+++.++++|..+.+.-|++           .|++++...+.|+++.|+.+.+---.++-+|..++
T Consensus         2 i~~~~rr~~vkvtp~~~l~~VL~eac~k-----------~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe   64 (65)
T PF11470_consen    2 ICYNFRRFKVKVTPNTTLNQVLEEACKK-----------FGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE   64 (65)
T ss_dssp             E-TTS-EEEE---TTSBHHHHHHHHHHH-----------TT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred             CccCCcEEEEEECCCCCHHHHHHHHHHH-----------cCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence            4567888999999999999999999999           99999999999999999988887777777776654

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.07  E-value=0.0023  Score=42.58  Aligned_cols=73  Identities=12%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc---eeEEE-ECCeecCCCCCccccCCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS---TVRFR-FDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~---~~rF~-fdG~rL~~~~TP~dL~MeDG   89 (126)
                      .|+|.|...+|..+-+.+-.+.|+..|+....+.+..        .+....   ..+|. -+|..|++++|.+++++.||
T Consensus         2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~--------~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dG   73 (79)
T PF08817_consen    2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGL--------PGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDG   73 (79)
T ss_dssp             EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS-----------S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT
T ss_pred             EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--------ccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCC
Confidence            5777887755688899999999999999999998320        111222   35666 68999999999999999999


Q ss_pred             CEEEE
Q psy4523          90 DTIEI   94 (126)
Q Consensus        90 D~Idv   94 (126)
                      |++..
T Consensus        74 d~L~L   78 (79)
T PF08817_consen   74 DVLVL   78 (79)
T ss_dssp             -EEEE
T ss_pred             CEEEe
Confidence            98764

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.97  E-value=0.017  Score=38.06  Aligned_cols=73  Identities=14%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEE--ECCeecCCCC--CccccC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFR--FDGQAINEQD--TPSTLE   85 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~--fdG~rL~~~~--TP~dL~   85 (126)
                      +.+.++|+|+-.||..+.-+..++++++.|++.....           ....... +.|.  |--+.+..++  |.++++
T Consensus         3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~-----------~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~   71 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQ-----------LFSPEESDFELITAFPRRELTDEDSKTLEEAG   71 (82)
T ss_dssp             TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHH-----------HHCTTTSSEEEEESSSTEECCSTTTSBTCCCT
T ss_pred             CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHh-----------cCCCCCccEEEEeCCCCcCCCccccccHHHhc
Confidence            4557888888899999999999999999999877666           3333333 6665  4567777665  999999


Q ss_pred             CCCCCEEEE
Q psy4523          86 MEEGDTIEI   94 (126)
Q Consensus        86 MeDGD~Idv   94 (126)
                      +-.+..|.|
T Consensus        72 l~p~~~l~v   80 (82)
T PF00789_consen   72 LLPSATLIV   80 (82)
T ss_dssp             TSSCEEEEE
T ss_pred             CCCCeEEEE
Confidence            988887765

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG0001|consensus

Probab=96.85  E-value=0.032  Score=33.95  Aligned_cols=70  Identities=13%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523          18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      .+....|....+.+.+..++..++...+..           .|++.+..++.|.|+.+.++.|-.++++..+..+.+...
T Consensus         3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~-----------~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDK-----------EGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             EEEecCCCEEEEEecCCCHHHHHHHHHHhh-----------cCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence            344567888999999999999998899999           899999999999999999999999999999999998765


Q ss_pred             e
Q psy4523          98 Q   98 (126)
Q Consensus        98 Q   98 (126)
                      .
T Consensus        72 ~   72 (75)
T KOG0001|consen   72 L   72 (75)
T ss_pred             c
Confidence            4

>KOG4248|consensus

Probab=96.77  E-value=0.0029  Score=59.79  Aligned_cols=71  Identities=14%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      +|+|++.|.++.+|.|..-.+++.+++..++.           .++.....|++|.|+.|.+++|..++++ ||-+|++.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~-----------~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlv   71 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRAS-----------VNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLV   71 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHh-----------cccccccceeeecceeeccchhhhhccC-CCeEEEee
Confidence            47888888898999999999999999999999           9999999999999999999999999999 99999999


Q ss_pred             eee
Q psy4523          96 QQQ   98 (126)
Q Consensus        96 ~~Q   98 (126)
                      -+.
T Consensus        72 erp   74 (1143)
T KOG4248|consen   72 ERP   74 (1143)
T ss_pred             ccC
Confidence            773

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=96.74  E-value=0.0062  Score=43.68  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC-CCCccccCCCCCCEEEEEee
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE-QDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~-~~TP~dL~MeDGD~Idv~~~   97 (126)
                      .++.+.|.+++++..|+....+.           .++++.+.++.|||+-|.+ ..|..++|+-.|.+|.+.++
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~-----------f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHA-----------FSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHH-----------hcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            46789999999999999999999           9999999999999998886 48999999999999998875

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=95.77  E-value=0.073  Score=34.47  Aligned_cols=64  Identities=20%  Similarity=0.421  Sum_probs=47.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +..+.+....++..|.+...+++..       ..+.....+.+..||+.+.     .+.-++|||+|.++.--.||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~-------~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPG-------LLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCch-------HHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            4567777789999999999888210       0112345788888999998     34569999999999887776

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.62  E-value=0.18  Score=34.34  Aligned_cols=71  Identities=6%  Similarity=0.027  Sum_probs=54.3

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC--eecC--------CCCCcc
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG--QAIN--------EQDTPS   82 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG--~rL~--------~~~TP~   82 (126)
                      ..++|.++-.+|..+.-+...+++++.|++....+            +..+..+.+..+=  +.+.        .+.|.+
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~------------~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~   70 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL------------KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLL   70 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC------------CCCCCcEEEecCCCCccccccccccCcCCCCHH
Confidence            46777777799999999999999999999988543            3445677777654  5564        367999


Q ss_pred             ccCCCCCCEEEEE
Q psy4523          83 TLEMEEGDTIEIY   95 (126)
Q Consensus        83 dL~MeDGD~Idv~   95 (126)
                      ++||....++-|.
T Consensus        71 eaGL~~s~~L~V~   83 (85)
T cd01774          71 EAGLSNSEVLFVQ   83 (85)
T ss_pred             HcCCCCccEEEEe
Confidence            9999988766553

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=95.39  E-value=0.25  Score=32.16  Aligned_cols=67  Identities=18%  Similarity=0.377  Sum_probs=48.7

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|+|++-+. ..+..+.+...+++..|.+    .           .+++...+....||+.+.     .+--+.|||.|+
T Consensus         4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~----~-----------l~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Ve   62 (70)
T PRK08364          4 MIRVKVIGR-GIEKEIEWRKGMKVADILR----A-----------VGFNTESAIAKVNGKVAL-----EDDPVKDGDYVE   62 (70)
T ss_pred             EEEEEEecc-ccceEEEcCCCCcHHHHHH----H-----------cCCCCccEEEEECCEECC-----CCcCcCCCCEEE
Confidence            377887553 2355677788888887764    3           456667789999999994     456699999999


Q ss_pred             EEeeecCC
Q psy4523          94 IYQQQTGG  101 (126)
Q Consensus        94 v~~~Q~GG  101 (126)
                      ++.---||
T Consensus        63 ii~~V~GG   70 (70)
T PRK08364         63 VIPVVSGG   70 (70)
T ss_pred             EEccccCC
Confidence            98764444

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=94.97  E-value=0.34  Score=32.21  Aligned_cols=73  Identities=21%  Similarity=0.327  Sum_probs=47.5

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+..+.+. .++++.|++..+++......-.-...|-..+.+++..||+.+..++.   ..++|||+|.++.--.||
T Consensus        16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence            34566665 88999999999988311000000001111245889999999986542   569999999998876665

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=94.88  E-value=0.42  Score=31.49  Aligned_cols=71  Identities=10%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC---CCCccccCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE---QDTPSTLEME   87 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~---~~TP~dL~Me   87 (126)
                      ...+|.|+-.+|..+..+...+++++.|++.....           .+.....+.|.-  -.+.+.+   +.|..++++-
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~-----------~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~   71 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAA-----------LTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALL   71 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHc-----------ccCCCCCEEEEeCCCCcCCccccccCCHHHCCCC
Confidence            45677777789999999999999999999988555           444444555543  4555553   3688888887


Q ss_pred             CCCEEEE
Q psy4523          88 EGDTIEI   94 (126)
Q Consensus        88 DGD~Idv   94 (126)
                      ...++-|
T Consensus        72 p~~~l~v   78 (80)
T smart00166       72 PSSTLVL   78 (80)
T ss_pred             CceEEEE
Confidence            7766554

Present in FAF1 and Shp1p.

>KOG0006|consensus

Probab=94.80  E-value=0.1  Score=44.55  Aligned_cols=60  Identities=15%  Similarity=0.324  Sum_probs=51.5

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      ..+.+.|+.++.+..|++..+++           .|+++++++.+|-|+.|+.+-|....+|.--...+++
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~-----------~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKR-----------QGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHh-----------hCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            33678899999999999999999           9999999999999999999999996666555555554

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.59  E-value=0.52  Score=30.77  Aligned_cols=67  Identities=4%  Similarity=-0.009  Sum_probs=48.1

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecC---CCCCccccCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAIN---EQDTPSTLEMEE   88 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~---~~~TP~dL~MeD   88 (126)
                      ..+|.|+-.+|..+..+...+++++.|++.....           ... ...+.|.-  -.+.+.   .+.|.+++|+.+
T Consensus         2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~-----------~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~   69 (77)
T cd01767           2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN-----------GPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN   69 (77)
T ss_pred             cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc-----------CCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence            4567777789999999999999999999877655           222 44555553  355554   478999999985


Q ss_pred             CCEE
Q psy4523          89 GDTI   92 (126)
Q Consensus        89 GD~I   92 (126)
                      .-++
T Consensus        70 s~~~   73 (77)
T cd01767          70 EVVF   73 (77)
T ss_pred             ceEE
Confidence            4433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=94.22  E-value=0.59  Score=31.96  Aligned_cols=75  Identities=15%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|++-+...+|.+.-+++.---|.+++++-..+-- +...     ...+-..+|..-.++-+.+++-..+.++-|||+.+
T Consensus         6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~-kis~-----~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Le   79 (81)
T COG5417           6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESL-KISI-----FDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILE   79 (81)
T ss_pred             EEEEEeEecCCceEEEeccccchHHHHHHHHHHHh-hccc-----cccCCCEEEEeccceEecCCceEEeccccCCCEEE
Confidence            35566667778888899999999999999776651 1000     22233467888789999999999999999999876


Q ss_pred             E
Q psy4523          94 I   94 (126)
Q Consensus        94 v   94 (126)
                      .
T Consensus        80 i   80 (81)
T COG5417          80 I   80 (81)
T ss_pred             e
Confidence            4

>PRK06437 hypothetical protein; Provisional

Probab=94.16  E-value=0.54  Score=30.47  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=44.6

Q ss_pred             CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          24 NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        24 g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.+..+.+...+++..|.+    +           .|+++..+....||..+.     .+.-+.|||.|+++.--.||
T Consensus        10 ~~~~~~~i~~~~tv~dLL~----~-----------Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437         10 HINKTIEIDHELTVNDIIK----D-----------LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             CcceEEEcCCCCcHHHHHH----H-----------cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence            4556777888888877764    4           667788888889999996     56678999999998764444

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=93.51  E-value=1.1  Score=29.96  Aligned_cols=68  Identities=6%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEE--ECCeecCC-CCCccccCCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFR--FDGQAINE-QDTPSTLEMEEG   89 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~--fdG~rL~~-~~TP~dL~MeDG   89 (126)
                      ..+|.|+-.||..+..++..+++++.|++.....           .+. ....+.+.  |=.+.+.+ +.|.+|+|+.+.
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~-----------~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s   72 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNA-----------RPEFAARPFTLMTAFPVKELSDESLTLKEANLLNA   72 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHh-----------CCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence            4566666689999999999999999999877765           322 23445554  55666664 689999999875


Q ss_pred             CEE
Q psy4523          90 DTI   92 (126)
Q Consensus        90 D~I   92 (126)
                      -+|
T Consensus        73 ~v~   75 (79)
T cd01770          73 VIV   75 (79)
T ss_pred             EEE
Confidence            544

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK07440 hypothetical protein; Provisional

Probab=93.47  E-value=0.99  Score=29.51  Aligned_cols=68  Identities=24%  Similarity=0.409  Sum_probs=49.5

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|+|.|   +|+.  +.+....++..|.+    .           .++++..+-.-.||+-|..+ .-++.-+.|||.|
T Consensus         3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~-----------l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~I   61 (70)
T PRK07440          3 NPITLQV---NGET--RTCSSGTSLPDLLQ----Q-----------LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRL   61 (70)
T ss_pred             CceEEEE---CCEE--EEcCCCCCHHHHHH----H-----------cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEE
Confidence            4688888   4553  55566777777664    5           77888899999999888753 3345569999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      +++.---||
T Consensus        62 EIv~~v~GG   70 (70)
T PRK07440         62 EIVTIVGGG   70 (70)
T ss_pred             EEEEEecCC
Confidence            998764444

>KOG3493|consensus

Probab=93.36  E-value=0.048  Score=36.42  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.+.+.+.=|+.+.++..++++++.+++..+.+           .|-.++.+++.=-+.-+.+.-|.++++|.||--.+.
T Consensus         2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQ-----------tGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-----------TGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ceehhhhhcCceEEEEeCCcccccCHHHHHHHh-----------hCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            455666666899999999999999999999999           888888888875667778889999999999987776


Q ss_pred             Ee
Q psy4523          95 YQ   96 (126)
Q Consensus        95 ~~   96 (126)
                      +.
T Consensus        71 yy   72 (73)
T KOG3493|consen   71 YY   72 (73)
T ss_pred             ee
Confidence            53

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=93.23  E-value=0.49  Score=31.14  Aligned_cols=62  Identities=13%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+..+.+...+++..|.+....+.          .++.  ...+.+..||+.+.     .+.-++|||+|.++.--.||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~----------p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKF----------PSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHC----------hhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence            456778888899999999888771          1221  13456888998864     44468999999998775555

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=92.83  E-value=1  Score=29.53  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=46.1

Q ss_pred             EEEEEecCC-CcHHHHHHHHHHHhhhhhhhhhhhcc-C--ccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          26 VVQFKIKKG-TPLRKLMNAYCERCVSILSVLITLQN-L--SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        26 ~v~fkIk~t-t~l~kL~~~y~~~~~~~~~~~~~~~g-l--~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      ...+.+... +++..|.+..+++           .+ +  ....+++..||+.+..     +.-++|||+|.++.--.||
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~-----------~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKE-----------GPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHh-----------CchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence            346777766 8999999999998           32 2  2356788889998884     5689999999998776665

The C-terminal Gly-Gly of this model is critical to function.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=92.71  E-value=1.1  Score=28.46  Aligned_cols=64  Identities=23%  Similarity=0.398  Sum_probs=42.4

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      +|.+   +|+.+.+  . .+++..|.+.               .+++.+.+..-.||+-+.. ..-.+.-+.|||.|+++
T Consensus         2 ~i~~---Ng~~~~~--~-~~tl~~Ll~~---------------l~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv   59 (65)
T PRK06488          2 KLFV---NGETLQT--E-ATTLALLLAE---------------LDYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEIL   59 (65)
T ss_pred             EEEE---CCeEEEc--C-cCcHHHHHHH---------------cCCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEE
Confidence            4555   5665555  3 3466666643               4455667888999988874 23334569999999998


Q ss_pred             eeecCC
Q psy4523          96 QQQTGG  101 (126)
Q Consensus        96 ~~Q~GG  101 (126)
                      .--.||
T Consensus        60 ~~V~GG   65 (65)
T PRK06488         60 SPMQGG   65 (65)
T ss_pred             EeccCC
Confidence            765554

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=92.28  E-value=1.5  Score=27.64  Aligned_cols=65  Identities=22%  Similarity=0.466  Sum_probs=43.7

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      +|+|   +|+.  +.+....++..|.+    .           .|++...+..-.||.-+...+ -.+--++|||.|+++
T Consensus         2 ~i~v---NG~~--~~~~~~~tl~~lL~----~-----------l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~   60 (66)
T PRK05659          2 NIQL---NGEP--RELPDGESVAALLA----R-----------EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIV   60 (66)
T ss_pred             EEEE---CCeE--EEcCCCCCHHHHHH----h-----------cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEE
Confidence            4555   4553  45556677766654    4           567777888889998887554 344458999999998


Q ss_pred             eeecCC
Q psy4523          96 QQQTGG  101 (126)
Q Consensus        96 ~~Q~GG  101 (126)
                      .---||
T Consensus        61 ~~vgGG   66 (66)
T PRK05659         61 HALGGG   66 (66)
T ss_pred             EEecCC
Confidence            764443

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=92.07  E-value=0.57  Score=29.87  Aligned_cols=65  Identities=22%  Similarity=0.434  Sum_probs=50.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +....+....+++.|.+..+.+...        .. ....+.+..||+.+.. + -.+.-+.|||+|.++.--.||
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~--------~~-~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPE--------LA-LRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGG--------GH-TTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEESTSTS
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccc--------cc-cCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEECCCCCC
Confidence            5678888999999999999988210        00 3478999999999998 3 666778999999998776665

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=91.97  E-value=1.1  Score=28.08  Aligned_cols=60  Identities=15%  Similarity=0.408  Sum_probs=38.8

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +|+  .+.+...+++..|.+.+               ++. ..+.+..||..+...+ -.+--+.|||+|+++.---||
T Consensus         6 Ng~--~~~~~~~~tl~~ll~~l---------------~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          6 NQQ--TLSLPDGATVADALAAY---------------GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             CCE--EEECCCCCcHHHHHHhh---------------CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence            454  34555667777776543               232 3577889998886432 333449999999998765554

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=91.75  E-value=2.9  Score=28.56  Aligned_cols=71  Identities=10%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec---CCCCCccccCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI---NEQDTPSTLEME   87 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL---~~~~TP~dL~Me   87 (126)
                      +.-.|.|+-.+|..+.-+...+++|+.|.+.....            |..+..+.++-+  =+.+   ..+.|..++||.
T Consensus         4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~------------g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~   71 (82)
T cd01773           4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK------------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLC   71 (82)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc------------CCCCCCEEEecCCCCcccCCcccCCCHHHcCCC
Confidence            34556666689999999999999999998854443            445666666643  2222   234799999999


Q ss_pred             CCCEEEEE
Q psy4523          88 EGDTIEIY   95 (126)
Q Consensus        88 DGD~Idv~   95 (126)
                      .-+++-|-
T Consensus        72 P~~~LfVq   79 (82)
T cd01773          72 PQETVFVQ   79 (82)
T ss_pred             CCcEEEEe
Confidence            98887664

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00455 RBD Raf-like Ras-binding domain

Probab=91.57  E-value=1.1  Score=29.33  Aligned_cols=44  Identities=23%  Similarity=0.338  Sum_probs=38.3

Q ss_pred             EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC
Q psy4523          18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG   72 (126)
Q Consensus        18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG   72 (126)
                      +|.-.+|+...++++++.++..+...-|++           +|+.+....+.+-|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~k-----------r~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKK-----------RGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHH-----------cCCCHHHEEEEEcC
Confidence            444578999999999999999999999999           99999887777754

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=90.91  E-value=3.3  Score=27.39  Aligned_cols=69  Identities=7%  Similarity=0.021  Sum_probs=49.8

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC---CCCccccCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE---QDTPSTLEMEE   88 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~---~~TP~dL~MeD   88 (126)
                      ...|.|+-.+|..+.-+...++++..|.+.....           .+. ...+.|.-  =-+.+.+   +.|..++|+-.
T Consensus         4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~-----------~~~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~P   71 (79)
T cd01772           4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELN-----------TGN-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVP   71 (79)
T ss_pred             EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHc-----------CCC-CCCEEEEeCCCCeECCcccccCCHHHCCCCC
Confidence            3556666689999999999999999999988766           332 24455543  3555643   47999999988


Q ss_pred             CCEEEE
Q psy4523          89 GDTIEI   94 (126)
Q Consensus        89 GD~Idv   94 (126)
                      ..++-|
T Consensus        72 sa~L~v   77 (79)
T cd01772          72 SAVLIV   77 (79)
T ss_pred             ceEEEE
Confidence            776654

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.49  E-value=1.1  Score=30.86  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=38.2

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc---ceeEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM---STVRFRF   70 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~---~~~rF~f   70 (126)
                      ..|+++..|+.+.|++.++.-+..|+...+++           .|.+.   +.+.+.|
T Consensus         2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R-----------l~~d~~~~~~~~L~Y   48 (86)
T cd06409           2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQR-----------LGDDDFETHLYALSY   48 (86)
T ss_pred             cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH-----------hCCccccCCcccEEE
Confidence            36788888999999999999999999999999           77775   5677777

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=90.45  E-value=2.1  Score=27.66  Aligned_cols=45  Identities=11%  Similarity=0.225  Sum_probs=35.8

Q ss_pred             cEEEEEEeccCCEEE-EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523          14 HINLKVLGQDNNVVQ-FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF   70 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~-fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f   70 (126)
                      +|.||+.-. +.... +.+.+...+..|....+++           .+.....+++.|
T Consensus         1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~-----------~~~~~~~~~l~Y   46 (84)
T PF00564_consen    1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREK-----------FGLLDEDFQLKY   46 (84)
T ss_dssp             SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHH-----------HTTSTSSEEEEE
T ss_pred             CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHH-----------hCCCCccEEEEe
Confidence            366777654 33344 8999999999999999999           777778888888

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=90.39  E-value=1.1  Score=35.94  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             CCCCcEEEEEEecc--CCEE----EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC------eecCC
Q psy4523          10 STDEHINLKVLGQD--NNVV----QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG------QAINE   77 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~--g~~v----~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG------~rL~~   77 (126)
                      .....|-|.++.-|  ...+    ++-|.++.++..|....+++           .|++.++=-.+|.-      ..|..
T Consensus        64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~-----------~g~p~~t~l~lyEEi~~~~ie~i~~  132 (249)
T PF12436_consen   64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINER-----------AGLPPDTPLLLYEEIKPNMIEPIDP  132 (249)
T ss_dssp             -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHH-----------HT--TT--EEEEEEEETTEEEE--S
T ss_pred             CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHH-----------cCCCCCCceEEEEEeccceeeEcCC
Confidence            34556777776544  4554    58999999999999999999           88987654444432      46789


Q ss_pred             CCCccccCCCCCCEEEEEeeec
Q psy4523          78 QDTPSTLEMEEGDTIEIYQQQT   99 (126)
Q Consensus        78 ~~TP~dL~MeDGD~Idv~~~Q~   99 (126)
                      +.|.+..++.|||+|-+.....
T Consensus       133 ~~t~~~~el~~GdIi~fQ~~~~  154 (249)
T PF12436_consen  133 NQTFEKAELQDGDIICFQRAPS  154 (249)
T ss_dssp             SSBHHHTT--TTEEEEEEE--G
T ss_pred             CCchhhcccCCCCEEEEEeccc
Confidence            9999999999999777666543

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=90.17  E-value=3.2  Score=26.40  Aligned_cols=65  Identities=17%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      +|.|   +|+.  +.+....++..|.+    .           .+.....+.+-.||+-|.. ..-++.-+.+||.|+++
T Consensus         2 ~i~v---Ng~~--~~~~~~~tl~~ll~----~-----------l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii   60 (66)
T PRK08053          2 QILF---NDQP--MQCAAGQTVHELLE----Q-----------LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLF   60 (66)
T ss_pred             EEEE---CCeE--EEcCCCCCHHHHHH----H-----------cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEE
Confidence            4454   4554  44456667777664    3           4455667899999988864 33444569999999998


Q ss_pred             eeecCC
Q psy4523          96 QQQTGG  101 (126)
Q Consensus        96 ~~Q~GG  101 (126)
                      .---||
T Consensus        61 ~~v~GG   66 (66)
T PRK08053         61 QVIAGG   66 (66)
T ss_pred             EEccCC
Confidence            765554

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=90.03  E-value=2.8  Score=28.68  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---Ce--ecCCCCCccccCCCCC
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQ--AINEQDTPSTLEMEEG   89 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~--rL~~~~TP~dL~MeDG   89 (126)
                      |.|.|.--.+....++|++-+|+.|+++.....           .|.+- ..|+.|.   |+  .|+...|.+++|+=..
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~-----------~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~   68 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRS-----------RNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSK   68 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHh-----------hCccc-ceEEEeecCCcccccccccccHhhhcceec
Confidence            345555433466899999999999999999988           77744 7778773   43  4678889999887655


Q ss_pred             CEEEE
Q psy4523          90 DTIEI   94 (126)
Q Consensus        90 D~Idv   94 (126)
                      -.|-+
T Consensus        69 ~~i~l   73 (80)
T cd01811          69 TNICL   73 (80)
T ss_pred             cEEEE
Confidence            44433

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=89.96  E-value=2.9  Score=27.75  Aligned_cols=64  Identities=11%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CC--eecCCCCCccccCCCCCCEEE
Q psy4523          18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DG--QAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG--~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      +|.-.||......|++..+++.+...-|++           +|+.+...-+.+  ++  ..+..++-.   ..-.|++|.
T Consensus         3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-----------r~l~~~~~~v~~~~~~~~~~~~~~~d~---~~L~~~El~   68 (72)
T cd01760           3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKK-----------RGLNPECCDVFLLGLDEKKPLDLDTDS---SSLAGEELE   68 (72)
T ss_pred             EEECcCCCeEEEEECCCCCHHHHHHHHHHH-----------cCCCHHHEEEEEecCCCcCCcCchhhh---hhhcCCEEE
Confidence            444578999999999999999999999999           999887644444  34  333333222   333567676


Q ss_pred             EE
Q psy4523          94 IY   95 (126)
Q Consensus        94 v~   95 (126)
                      |.
T Consensus        69 Ve   70 (72)
T cd01760          69 VE   70 (72)
T ss_pred             EE
Confidence            64

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=89.94  E-value=3.8  Score=27.89  Aligned_cols=69  Identities=16%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      ...|+|.|   +|+.  +.+....++..|.+    .           .+++...+-.-.||.-|.. ..-++.-+.+||.
T Consensus        16 ~~~m~I~V---NG~~--~~~~~~~tl~~LL~----~-----------l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~   74 (84)
T PRK06083         16 MVLITISI---NDQS--IQVDISSSLAQIIA----Q-----------LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDA   74 (84)
T ss_pred             CceEEEEE---CCeE--EEcCCCCcHHHHHH----H-----------cCCCCceEEEEECCEEeCH-HHcCcccCCCCCE
Confidence            34677776   5654  44456666766665    4           5577788888999998864 4455667999999


Q ss_pred             EEEEeeecCC
Q psy4523          92 IEIYQQQTGG  101 (126)
Q Consensus        92 Idv~~~Q~GG  101 (126)
                      |+++----||
T Consensus        75 IEIv~~VgGG   84 (84)
T PRK06083         75 ISLFQAIAGG   84 (84)
T ss_pred             EEEEEEecCC
Confidence            9998764444

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=89.80  E-value=2.5  Score=26.97  Aligned_cols=60  Identities=15%  Similarity=0.320  Sum_probs=41.1

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +|..  +.+....++..|.+    .           .+++...+-.-+||.-|...+=. +. +.|||.|+++.---||
T Consensus         6 NG~~--~~~~~~~tl~~ll~----~-----------l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          6 NEEQ--VEVDEQTTVAALLD----S-----------LGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTAVQGG   65 (65)
T ss_pred             CCEE--EEcCCCCcHHHHHH----H-----------cCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEeeccCC
Confidence            4543  44455666666654    4           67788899999999977754333 33 8999999998764443

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=89.40  E-value=3.4  Score=31.76  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             EEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEEEC-CeecCC-CCC-ccccCC
Q psy4523          15 INLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFD-GQAINE-QDT-PSTLEM   86 (126)
Q Consensus        15 I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~fd-G~rL~~-~~T-P~dL~M   86 (126)
                      |+|-|.+-+|    ..+.|.+..++++..|++...++           .+.+... +.|.+. |..|.. +++ ..++.-
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~-----------~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~   69 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSER-----------LPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLS   69 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhh-----------cCCCccceeEEEEeCCCeeCCCccccHHhhcc
Confidence            5788888888    57889999999999999999999           7776655 556653 445533 333 344444


Q ss_pred             CCCC----EEEEEeeecCCCc
Q psy4523          87 EEGD----TIEIYQQQTGGFK  103 (126)
Q Consensus        87 eDGD----~Idv~~~Q~GG~~  103 (126)
                      .+.|    .+.+.....||-+
T Consensus        70 ~~~~~~~~~l~l~~rl~GGKG   90 (162)
T PF13019_consen   70 SSQDSDFITLRLSLRLRGGKG   90 (162)
T ss_pred             CcCCCCceEEEEEEeccCCCc
Confidence            4444    5777788888854

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=89.28  E-value=0.63  Score=31.85  Aligned_cols=76  Identities=13%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      ..|||..+.  .+-++|.+.-++..|.+..+++           .+++.+.+++.|.-     ..+.+-..+.|.|.=+|
T Consensus         3 ~vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~k-----------Lkl~~e~i~LsYkd-----e~s~~~v~l~d~dle~a   64 (80)
T cd06406           3 YVVKVHFKY--TVAIQVARGLSYATLLQKISSK-----------LELPAEHITLSYKS-----EASGEDVILSDTNMEDV   64 (80)
T ss_pred             eEEEEEEEE--EEEEEcCCCCCHHHHHHHHHHH-----------hCCCchhcEEEecc-----CCCCCccCcChHHHHHH
Confidence            456776653  7889999999999999999999           88888888888853     44555555556664334


Q ss_pred             EeeecCCCcCCCceeeecc
Q psy4523          95 YQQQTGGFKQTPQLQIWHT  113 (126)
Q Consensus        95 ~~~Q~GG~~~~~~~~~~~~  113 (126)
                      + .|..++.    +-||-+
T Consensus        65 w-s~~~~~~----lTLwC~   78 (80)
T cd06406          65 W-SQAKDGC----LTLWCT   78 (80)
T ss_pred             H-HhhcCCe----EEEEEe
Confidence            3 3444333    337754

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=88.76  E-value=3  Score=26.29  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=39.6

Q ss_pred             EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.+....++..|.+    .           .++++..+.+..||+-+..+ ...+..+.|||.|+++.---||
T Consensus         8 ~~~~~~~tv~~ll~----~-----------l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         8 VEVEDGLTLAALLE----S-----------LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             EEcCCCCcHHHHHH----H-----------cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            44455666666655    3           55667888999999988643 3344579999999998764444

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=88.55  E-value=5.6  Score=26.64  Aligned_cols=70  Identities=14%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec---CCCCCccccCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI---NEQDTPSTLEME   87 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL---~~~~TP~dL~Me   87 (126)
                      +.++|.++-.+|..+.-+...+++|+.|++.....            |.+...+++.-.  =+.+   ..+.|..++||-
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~------------~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~   70 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK------------GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLY   70 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc------------CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCC
Confidence            46778888899999999999999999999877544            444556666432  2333   335789999988


Q ss_pred             CCCEEEE
Q psy4523          88 EGDTIEI   94 (126)
Q Consensus        88 DGD~Idv   94 (126)
                      ...++-|
T Consensus        71 p~~~L~V   77 (80)
T cd01771          71 PQETLIL   77 (80)
T ss_pred             CCcEEEE
Confidence            8777655

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00666 PB1 PB1 domain

Probab=87.30  E-value=3.3  Score=26.74  Aligned_cols=45  Identities=9%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD   71 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd   71 (126)
                      |+||+.. .+....|.+.+..++..|....+++           .++....+++.|.
T Consensus         2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~-----------~~~~~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKR-----------FGLDNQSFTLKYQ   46 (81)
T ss_pred             ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-----------hCCCCCCeEEEEE
Confidence            5677765 4555679999999999999999999           7776677888874

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=86.80  E-value=2.4  Score=29.67  Aligned_cols=57  Identities=16%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             cEEEEEEeccCCEEEEEec--CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIK--KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT   80 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~T   80 (126)
                      .|+|++.+. -.-+.+.|.  .+++...|+....++..         ...+...+||+|+|+.|.+...
T Consensus         2 ~l~IRFs~s-ipDl~L~I~~~~~~Tv~~LK~lIR~~~p---------~~~s~~rLRlI~~Gr~L~d~t~   60 (97)
T PF10302_consen    2 YLTIRFSDS-IPDLPLDIPSPNTTTVAWLKQLIRERLP---------PEPSRRRLRLIYAGRLLNDHTD   60 (97)
T ss_pred             eEEEEECCC-CCCceeecCCCCcccHHHHHHHHHhhcC---------CCCccccEEeeecCcccCccch
Confidence            577777652 233667777  88999999999998811         2345668999999999986543

They contain a characteristic GFDRL sequence motif.

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=86.38  E-value=6.7  Score=25.20  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             ccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          59 QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        59 ~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .++++..+-.-.||.-|..++ -++.-+.|||.|++..---||
T Consensus        26 l~~~~~~vav~vN~~iv~r~~-w~~~~L~~gD~iEIv~~VgGG   67 (67)
T PRK07696         26 LELDNKIVVVERNKDILQKDD-HTDTSVFDGDQIEIVTFVGGG   67 (67)
T ss_pred             cCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEEEecCC
Confidence            678888899999998888643 344558999999998664443

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades

Probab=85.44  E-value=0.9  Score=31.06  Aligned_cols=61  Identities=15%  Similarity=0.329  Sum_probs=38.4

Q ss_pred             EEecCCCcHHHHHHHHHHHhh-hhhhhhhhhccCccceeEEEECCe-------ecCCCCCccccCCCCCCEEEEE
Q psy4523          29 FKIKKGTPLRKLMNAYCERCV-SILSVLITLQNLSMSTVRFRFDGQ-------AINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~-~~~~~~~~~~gl~~~~~rF~fdG~-------rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      +.+.++.+|+.+++..|++-+ +-..     .++.-..-.+++-+-       |=+-+.+..+| +.||++|-|.
T Consensus         1 i~v~~~~TL~~lid~L~~~~~~qlk~-----PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt   69 (84)
T PF08825_consen    1 IEVSPSWTLQDLIDSLCEKPEFQLKK-----PSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT   69 (84)
T ss_dssp             EEESTTSBSHHHHHHHHHSTTT--SS------EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred             CCcCccchHHHHHHHHHhChhhhcCC-----CcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence            468899999999999999921 1000     222223334444332       22345778889 9999999885

This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=83.71  E-value=4.3  Score=25.58  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=39.0

Q ss_pred             EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+.+....++..|.+.               .+++.+.+....||+.+..++ =.+.-+.|||.|+++.--.||
T Consensus         8 ~~~~~~~~tv~~ll~~---------------l~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           8 PREVEEGATLAELLEE---------------LGLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             EEEcCCCCCHHHHHHH---------------cCCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence            3444556666666543               456677888899998887643 222359999999998764444

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=83.44  E-value=10  Score=27.76  Aligned_cols=71  Identities=13%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-------CC
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-------EE   88 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-------eD   88 (126)
                      -|.|+- ....++...+.+++.-.|++.....           ...+++..|++-++..|.++.|..++|.       +.
T Consensus         4 FlmIrR-~KTTiF~dakes~tVlelK~~iegI-----------~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~   71 (119)
T cd01788           4 FLMIRR-HKTTIFTDAKESTTVYELKRIVEGI-----------LKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQA   71 (119)
T ss_pred             EEEEEe-cceEEEeecCCcccHHHHHHHHHHH-----------hcCChhHheeecCceeecccccHHHcCccccccccCC
Confidence            344442 3456789999999999999999988           7789999999988899999999999999       55


Q ss_pred             CCEEEEEeee
Q psy4523          89 GDTIEIYQQQ   98 (126)
Q Consensus        89 GD~Idv~~~Q   98 (126)
                      -.++=..++.
T Consensus        72 pA~vgLa~r~   81 (119)
T cd01788          72 PATVGLAFRS   81 (119)
T ss_pred             CCeEEEEEec
Confidence            6666665553

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG3439|consensus

Probab=83.15  E-value=6  Score=28.85  Aligned_cols=70  Identities=13%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             CCCCCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeec--CCCCCcc
Q psy4523           9 KSTDEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAI--NEQDTPS   82 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL--~~~~TP~   82 (126)
                      ++...+|+|+++.-.+    +...|+|.++.+|.++.....+.           .+++.+.--|+|=....  +++++..
T Consensus        25 ~~~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~-----------Lkl~as~slflYVN~sFAPsPDq~v~   93 (116)
T KOG3439|consen   25 EKNIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKF-----------LKLQASDSLFLYVNNSFAPSPDQIVG   93 (116)
T ss_pred             CCCcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHH-----------hCCcccCeEEEEEcCccCCCchhHHH
Confidence            4445789999886433    23469999999999999999999           88887777777744333  4677777


Q ss_pred             ccCCCCC
Q psy4523          83 TLEMEEG   89 (126)
Q Consensus        83 dL~MeDG   89 (126)
                      +|-+-=|
T Consensus        94 ~Ly~cf~  100 (116)
T KOG3439|consen   94 NLYECFG  100 (116)
T ss_pred             HHHHhcC
Confidence            7765433

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=82.60  E-value=0.4  Score=40.25  Aligned_cols=96  Identities=11%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEec---C--CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeE-----EEECCeecCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIK---K--GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVR-----FRFDGQAINEQ   78 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk---~--tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~r-----F~fdG~rL~~~   78 (126)
                      +.....|+|.+++..+-.+.+++.   +  ++.+..|++++++++...- ......+++.+.++     ++|+-+++.+.
T Consensus        73 Pgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~-~~~~~~~vp~dKik~~~~~lL~~kkPv~~~  151 (309)
T PF12754_consen   73 PGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQ-ATYDETRVPLDKIKNFRCRLLYKKKPVGDS  151 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccc-cccccccCCHHHhhhhhhhheecCccCCCc
Confidence            334567999998887755543332   3  6888999999999532100 00002778888899     99999999889


Q ss_pred             CCccccCCC-------CCCEEEEEeeecCCCcCC
Q psy4523          79 DTPSTLEME-------EGDTIEIYQQQTGGFKQT  105 (126)
Q Consensus        79 ~TP~dL~Me-------DGD~Idv~~~Q~GG~~~~  105 (126)
                      .|..++.=+       .|-++++.+=-.||....
T Consensus       152 ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~~  185 (309)
T PF12754_consen  152 KTLAEVLADSESRLLSGGKEVEFGVMVLGGAAVI  185 (309)
T ss_dssp             ----------------------------------
T ss_pred             CcHHHHHhcccchhccCCceEEEEEEEECCcccC
Confidence            999888644       466788888888887755

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences

Probab=81.03  E-value=7.6  Score=26.91  Aligned_cols=63  Identities=11%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECC--eecCCCCCccccCCCCCCEEEEEee
Q psy4523          27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDG--QAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG--~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      .-+-|...+++..+-++.+..+++        .-+   +-..+++..+|  ..+..++|.++.||..-|.|||+.+
T Consensus        17 ~Lv~VDt~dTmdqVA~k~A~HsVG--------rRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~   84 (85)
T PF06234_consen   17 QLVPVDTEDTMDQVAAKVAHHSVG--------RRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE   84 (85)
T ss_dssp             EEEEEETT-BHHHHHHHHHTTTTT--------TSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHhhhhcc--------eecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence            347888899999999998888542        222   22379999999  9999999999999999999999864

Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=80.84  E-value=9.3  Score=25.82  Aligned_cols=54  Identities=11%  Similarity=0.400  Sum_probs=41.5

Q ss_pred             CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCccccCCCCCCEEEEEee
Q psy4523          24 NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        24 g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      +..+.+.+...++++.+.+    .           .|++...+-+++ ||+.+..+     .-+++||.|.|+..
T Consensus        22 ~~~~~~~~~~~~tvkd~IE----s-----------LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~   76 (81)
T PF14451_consen   22 GGPFTHPFDGGATVKDVIE----S-----------LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV   76 (81)
T ss_pred             CCceEEecCCCCcHHHHHH----H-----------cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence            3556778888888888765    3           888877776666 89888875     56689999999854

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=80.70  E-value=9  Score=25.86  Aligned_cols=44  Identities=14%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF   70 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f   70 (126)
                      |+||+.- .+..+.|++.++..+..|.+..+++           .++.. ..+.+.|
T Consensus         1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r-----------~~~~~~~~f~LkY   45 (82)
T cd06407           1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKR-----------FKLDDMSAFDLKY   45 (82)
T ss_pred             CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHH-----------hCCCCCCeeEEEE
Confidence            4566654 4566789999999999999999999           66654 6777777

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=80.11  E-value=5.1  Score=26.62  Aligned_cols=55  Identities=11%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             cCCCcHHHHHHHHHHHhhhhhhhhhhhcc-CccceeEEEECCeecCCCCCcccc-CCCCCCEEEEEee
Q psy4523          32 KKGTPLRKLMNAYCERCVSILSVLITLQN-LSMSTVRFRFDGQAINEQDTPSTL-EMEEGDTIEIYQQ   97 (126)
Q Consensus        32 k~tt~l~kL~~~y~~~~~~~~~~~~~~~g-l~~~~~rF~fdG~rL~~~~TP~dL-~MeDGD~Idv~~~   97 (126)
                      .+++.+..|...-+..           .. ....++.|.++|.+|++.....++ ++++|..+.+..+
T Consensus         2 ~~~d~v~dvrq~L~~~-----------~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    2 SPTDTVQDVRQVLAES-----------PETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             ChhhHHHHHHHHHHhC-----------ccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            4556666776666666           22 345689999999999998888888 5888998888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2k1f_A	88	Sumo-3 From Drosophila Melanogaster (Dsmt3) Length		1e-32
2io1_B	94	Crystal Structure Of Human Senp2 In Complex With Pr		1e-27
2awt_A	95	Solution Structure Of Human Small Ubiquitin-Like Mo		2e-27
2io3_B	81	Crystal Structure Of Human Senp2 In Complex With Ra		2e-27
2io0_B	91	Crystal Structure Of Human Senp2 In Complex With Pr		2e-27
2d07_B	93	Crystal Structure Of Sumo-3-Modified Thymine-Dna Gl		2e-27
2ckh_B	79	Senp1-sumo2 Complex Length = 79		2e-27
2iyd_B	81	Senp1 Covalent Complex With Sumo-2 Length = 81		2e-27
3uin_B	80	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		3e-27
1wz0_A	104	Solution Structure Of Human Sumo-2 (Smt3b), A Ubiqu		8e-27
1u4a_A	87	Solution Structure Of Human Sumo-3 C47s Length = 87		2e-26
1wm2_A	78	Crystal Structure Of Human Sumo-2 Protein Length =		8e-25
1wm3_A	72	Crystal Structure Of Human Sumo-2 Protein Length =		3e-24
2iy0_B	82	Senp1 (Mutant) Sumo1 Rangap Length = 82		3e-17
2iy1_B	83	Senp1 (Mutant) Full Length Sumo1 Length = 83		3e-17
2uyz_B	79	Non-Covalent Complex Between Ubc9 And Sumo1 Length		3e-17
2g4d_B	78	Crystal Structure Of Human Senp1 Mutant (C603s) In		3e-17
1a5r_A	103	Structure Determination Of The Small Ubiquitin-Rela		3e-17
1tgz_B	80	Structure Of Human Senp2 In Complex With Sumo-1 Len		4e-17
1y8r_C	97	Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Co		4e-17
2kqs_A	99	Phosphorylation Of Sumo-Interacting Motif By Ck2 En		4e-17
1z5s_B	82	Crystal Structure Of A Complex Between Ubc9, Sumo-1		4e-17
2bf8_B	77	Crystal Structure Of Sumo Modified Ubiquitin Conjug		1e-16
3kyc_D	97	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		2e-16
3rzw_C	99	Crystal Structure Of The Monobody Ysmb-9 Bound To H		4e-16
3kyd_D	115	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		8e-16
3v7o_A	227	Crystal Structure Of The C-Terminal Domain Of Ebola		2e-13
3pge_A	200	Structure Of Sumoylated Pcna Length = 200		1e-12
3ix6_A	360	Crystal Structure Of Thymidylate Synthase Thya From		1e-12
1l2n_A	101	Smt3 Solution Structure Length = 101		2e-12
1euv_B	86	X-Ray Structure Of The C-Terminal Ulp1 Protease Dom		2e-12
3qht_A	98	Crystal Structure Of The Monobody Ysmb-1 Bound To Y		2e-12
3v60_A	84	Structure Of S. Cerevisiae Pcna Conjugated To Sumo		2e-12
3tix_A	207	Crystal Structure Of The Chp1-Tas3 Complex Core Len		2e-12
2eke_C	106	Structure Of A Sumo-Binding-Motif Mimic Bound To Sm		2e-12
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-12
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-12
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-12
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-12
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-12
4da1_A	389	Crystal Structure Of Branched-Chain Alpha-Ketoacid		8e-12
2k8h_A	110	Solution Structure Of Sumo From Trypanosoma Brucei		6e-11
3v62_A	84	Structure Of The S. Cerevisiae Srs2 C-Terminal Doma		8e-10
3rd2_A	82	Nip45 Sumo-Like Domain 2 Length = 82		9e-05
2jxx_A	97	Nmr Solution Structure Of Ubiquitin-Like Domain Of		1e-04
3a4r_A	79	The Crystal Structure Of Sumo-Like Domain 2 In Nip4		4e-04

>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3) Length = 88

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 70/89 (78%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R             LSM  VRFRFDG
Sbjct: 11  EHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRA-----------GLSMQVVRFRFDG 59
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q INE DTP++LEMEEGDTIE+YQQQTGG
Sbjct: 60  QPINENDTPTSLEMEEGDTIEVYQQQTGG 88

>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-3 Length = 94

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 5   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 53
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
           GQ INE DTP+ LEME+ DTI+++QQQTGG  ++
Sbjct: 54  GQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 87

>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like Modifier Protein Isoform 2 (Sumo-2) Length = 95

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 15  NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 64  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With Rangap1- Sumo-2 Length = 81

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 3   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 51
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 81

>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 91

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 3   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 51
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 81

>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna Glycosylase Length = 93

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 15  NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 64  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

>pdb|2CKH|B Chain B, Senp1-sumo2 Complex Length = 79

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 1   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 49
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 79

>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2 Length = 81

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 1   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 49
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 79

>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Length = 80

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 2   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 50
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 51  GQPINETDTPAQLEMEDEDTIDVFQQQTGG 80

>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin- Like Protein Length = 104

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 66/90 (73%), Gaps = 11/90 (12%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 22  NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 70
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           GQ INE DTP+ LEME+ DTI+++QQQT G
Sbjct: 71  GQPINETDTPAQLEMEDEDTIDVFQQQTSG 100

>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s Length = 87

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AY ER           Q LSM  +RFRFD
Sbjct: 1   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSER-----------QGLSMRQIRFRFD 49
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
           GQ INE DTP+ LEME+ DTI+++QQQTGG +
Sbjct: 50  GQPINETDTPAQLEMEDEDTIDVFQQQTGGLE 81

>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein Length = 78

Iteration: 1
 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 63/86 (73%), Gaps = 11/86 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
          ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFD
Sbjct: 4  NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 52
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQ 97
          GQ INE DTP+ LEME+ DTI+++QQ
Sbjct: 53 GQPINETDTPAQLEMEDEDTIDVFQQ 78

>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein Length = 72

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 11/83 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
          HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFDGQ
Sbjct: 1  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQ 49
Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
           INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72

>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap Length = 82

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 1   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 50  QRIADNHTPKELGMEEEDVIEVYQEQTGG 78

>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1 Length = 83

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 1   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 50  QRIADNHTPKELGMEEEDVIEVYQEQTGG 78

>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 79

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 2   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 50
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 51  QRIADNHTPKELGMEEEDVIEVYQEQTGG 79

>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 78

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 1   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 50  QRIADNHTPKELGMEEEDVIEVYQEQTGG 78

>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related Modifier Sumo-1, Nmr, 10 Structures Length = 103

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 22  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 70
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 71  QRIADNHTPKELGMEEEDVIEVYQEQTGG 99

>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1 Length = 80

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 3   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 51
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 52  QRIADNHTPKELGMEEEDVIEVYQEQTGG 80

>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex Length = 97

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 20  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 68
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 69  QRIADNHTPKELGMEEEDVIEVYQEQTGG 97

>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2 Enhances Daxx Sumo Binding Activity Length = 99

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 22  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 70
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 71  QRIADNHTPKELGMEEEDVIEVYQEQTGG 99

>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 82

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 5   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 53
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 54  QRIADNHTPKELGMEEEDVIEVYQEQTGG 82

>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating Enzyme E2-25k Length = 77

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 11/88 (12%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           +I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+GQ
Sbjct: 1   YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQ 49
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 50  RIADNHTPKELGMEEEDVIEVYQEQTGG 77

>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 97

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 20  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 68
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+Q GG
Sbjct: 69  QRIADNHTPKELGMEEEDVIEVYQEQCGG 97

>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human Sumo1 Length = 99

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +Y +R           Q + M+++RF F+G
Sbjct: 22  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQR-----------QGVPMNSLRFLFEG 70
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 71  QRIADNHTPKELGMEEEDVIEVYQEQTGG 99

>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 115

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 11/88 (12%)
Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 39  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 87
Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTG 100
           Q I +  TP  L MEE D IE+YQ+Q G
Sbjct: 88  QRIADNHTPKELGMEEEDVIEVYQEQCG 115

>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola Virus Vp30 (Strain Reston-89) Length = 227

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQI---WHT 113
            I    TP  L+ME+ D IE +++Q GG      LQI   W T
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGGLTLAVLLQIAEHWAT 111

>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna Length = 200

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 29  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 76
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
            I    TP  L+ME+ D IE +++Q GG  +T
Sbjct: 77  RIQADQTPEDLDMEDNDIIEAHREQIGGGGET 108

>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From Brucella Melitensis Length = 360

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    ++ + FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
            I    TP  L+ME+ D IE +++Q GG +
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGGMR 98

>pdb|1L2N|A Chain A, Smt3 Solution Structure Length = 101

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 23  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 70
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 71  RIQADQTPEDLDMEDNDIIEAHREQIGG 98

>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 86

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 11  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 58
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 59  RIQADQTPEDLDMEDNDIIEAHREQIGG 86

>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast Sumo Length = 98

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 23  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 70
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 71  RIQADQTPEDLDMEDNDIIEAHREQIGG 98

>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On Lysine 164 Length = 84

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 9   HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 56
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 57  RIQADQTPEDLDMEDNDIIEAHREQIGG 84

>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core Length = 207

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++ F +DG 
Sbjct: 57  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLTFLYDGI 104
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQL 108
            I    TP  L+ME+ D IE +++Q GG    P L
Sbjct: 105 EIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFL 139

>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p- Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like Protein-E2 Complex As A Platform For Selective Interactions Within A Sumo Pathway Length = 106

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 31  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 78
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 79  RIQADQTPEDLDMEDNDIIEAHREQIGG 106

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGG 96

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGG 96

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGG 96

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGG 96

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +DG 
Sbjct: 21  HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 69  RIQADQTPEDLDMEDNDIIEAHREQIGG 96

>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           + HINLKV    + +  FKIKK TPLR+LM A+ +R           Q   M ++RF +D
Sbjct: 28  ETHINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYD 75
Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           G  I     P  L+ME+ D IE +++Q GG
Sbjct: 76  GIRIQADQAPEDLDMEDNDIIEAHREQIGG 105

>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei Length = 110

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 15  INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA 74
           + +KV+  D   + F+IK  T L+KL++ YC++           Q +S ++VRF FDG  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-----------QGISRNSVRFLFDGTP 75
Query: 75  INEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
           I+E  TP  L ME+ D I+   +QTGG +
Sbjct: 76  IDETKTPEELGMEDDDVIDAMVEQTGGLE 104

>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In Complex With Pcna Conjugated To Sumo On Lysine 164 Length = 84

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 14  HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
           HINL V    + +  F I   TPLR+LM A+  R           Q   M ++RF +DG 
Sbjct: 9   HINLXVSDGSSEIF-FXIXXTTPLRRLMEAFAXR-----------QGXEMDSLRFLYDGI 56
Query: 74  AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
            I    TP  L+ME+ D IE +++Q GG
Sbjct: 57  RIQADQTPEDLDMEDNDIIEAHREQIGG 84

>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2 Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
          + + L+V G++ +  ++  + + +PL+ LM+ Y E              LS   + F FD
Sbjct: 9  QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-----------GLSGRKLSFFFD 57
Query: 72 GQAINEQDTPSTLEMEEGDTIEIY 95
          G  ++ ++ P+ L ME GD IE++
Sbjct: 58 GTKLSGRELPADLGMESGDLIEVW 81

>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of Nfatc2ip. Northeast Structural Genomics Consortium Target Hr5627 Length = 97

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
          + + L+V G++ +  ++  + + +PL+ LM+ Y E              LS   + F FD
Sbjct: 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-----------GLSGRKLSFFFD 72
Query: 72 GQAINEQDTPSTLEMEEGDTIEIY 95
          G  ++ ++ P+ L ME GD IE++
Sbjct: 73 GTKLSGRELPADLGMESGDLIEVW 96

>pdb|3A4R|A Chain A, The Crystal Structure Of Sumo-Like Domain 2 In Nip45 Length = 79

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 15 INLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
          + L+V G++ + +++  +   +PL+ LM+ Y E              LS   + F FDG 
Sbjct: 8  LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-----------GLSGHKLSFFFDGT 56
Query: 74 AINEQDTPSTLEMEEGDTIEIY 95
           ++ ++ P+ L +E GD IE++
Sbjct: 57 KLSGKELPADLGLESGDLIEVW 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	9e-35
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	1e-34
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	2e-34
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	2e-34
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	3e-34
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	4e-33
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	1e-32
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	2e-32
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	4e-32
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	3e-31
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	2e-30
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	4e-30
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	7e-30
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	3e-29
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	7e-17
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	3e-16
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	7e-07

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score =  114 bits (287), Expect = 9e-35
 Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 11/92 (11%)

Query: 11  TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70
            ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER             LSM  +RFRF
Sbjct: 2   ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRF 50

Query: 71  DGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           DGQ INE DTP+ LEME+ DTI+++QQQTGG 
Sbjct: 51  DGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Length = 94

 Score =  114 bits (287), Expect = 1e-34
 Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 11/91 (12%)

Query: 12  DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
           ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER             LSM  +RFRFD
Sbjct: 5   NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRFD 53

Query: 72  GQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
           GQ INE DTP+ LEME+ DTI+++QQQTGG 
Sbjct: 54  GQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Length = 93

 Score =  114 bits (286), Expect = 2e-34
 Identities = 59/104 (56%), Positives = 71/104 (68%), Gaps = 14/104 (13%)

Query: 1   MTEEKKES---KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLIT 57
           M +EK +       ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER          
Sbjct: 1   MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ--------- 51

Query: 58  LQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
              LSM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52  --GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score =  114 bits (287), Expect = 2e-34
 Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 11/100 (11%)

Query: 2   TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
             ++      ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER             L
Sbjct: 12  KPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GL 60

Query: 62  SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           SM  +RFRFDGQ INE DTP+ LEME+ DTI+++QQQT G
Sbjct: 61  SMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Length = 79

 Score =  112 bits (283), Expect = 3e-34
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)

Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R             + M+++RF F+G
Sbjct: 2   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------GVPMNSLRFLFEG 50

Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           Q I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 51  QRIADNHTPKELGMEEEDVIEVYQEQTGG 79

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score =  110 bits (276), Expect = 4e-33
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 11/101 (10%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
            + E    K   E+I LKV+GQD++ + FK+K  T L+KL  +YC+R             
Sbjct: 8   PSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------G 56

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
           + M+++RF F+GQ I +  TP  L MEE D IE+YQ+QTGG
Sbjct: 57  VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score =  110 bits (275), Expect = 1e-32
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 11/102 (10%)

Query: 3   EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS 62
             +   K     + +KV+  D   + F+IK  T L+KL++ YC++             +S
Sbjct: 15  GAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-----------GIS 63

Query: 63  MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104
            ++VRF FDG  I+E  TP  L ME+ D I+   +QTGG + 
Sbjct: 64  RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLEH 105

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Length = 106

 Score =  109 bits (273), Expect = 2e-32
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 12/101 (11%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
              E K     + HINLKV    ++ + FKIKK TPLR+LM A+ +R             
Sbjct: 18  RGSEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------G 65

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             M ++RF +DG  I    TP  L+ME+ D IE +++Q GG
Sbjct: 66  KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Length = 207

 Score =  111 bits (278), Expect = 4e-32
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 2   TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
             E K     + HINLKV    ++ + FKIKK TPLR+LM A+ +R              
Sbjct: 45  KPEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------GK 92

Query: 62  SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQL 108
            M ++ F +DG  I    TP  L+ME+ D IE +++Q GG    P L
Sbjct: 93  EMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFL 139

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} Length = 115

 Score =  106 bits (266), Expect = 3e-31
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 11/99 (11%)

Query: 2   TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
           + E    K   E+I LKV+GQD++ + FK+K  T L+KL  +YC+R             +
Sbjct: 28  STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------GV 76

Query: 62  SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
            M+++RF F+GQ I +  TP  L MEE D IE+YQ+Q G
Sbjct: 77  PMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Length = 72

 Score =  102 bits (257), Expect = 2e-30
 Identities = 51/83 (61%), Positives = 59/83 (71%), Gaps = 11/83 (13%)

Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
          HINLKV GQD +VVQFKIK+ TPL KLM AYCER             LSM  +RFRFDGQ
Sbjct: 1  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRFDGQ 49

Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
           INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} Length = 227

 Score =  106 bits (266), Expect = 4e-30
 Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 12/102 (11%)

Query: 1   MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
            + E K     + HINLKV    ++ + FKIKK TPLR+LM A+ +R             
Sbjct: 8   HSGEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------G 55

Query: 61  LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
             M ++RF +DG  I    TP  L+ME+ D IE +++Q GG 
Sbjct: 56  KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Length = 79

 Score =  101 bits (254), Expect = 7e-30
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 11 TDEHINLKVLGQD-NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR 69
            + + L+V G++ + +++  +   +PL+ LM+ Y E              LS   + F 
Sbjct: 4  GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEA-----------MGLSGHKLSFF 52

Query: 70 FDGQAINEQDTPSTLEMEEGDTIEIY 95
          FDG  ++ ++ P+ L +E GD IE++
Sbjct: 53 FDGTKLSGKELPADLGLESGDLIEVW 78

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} Length = 97

 Score =  100 bits (251), Expect = 3e-29
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 2  TEEKKESKSTDEHINLKVLGQD-NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
              + S  T + + L+V G++ +  ++  + + +PL+ LM+ Y E              
Sbjct: 13 GLVPRGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-----------MG 61

Query: 61 LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95
          LS   + F FDG  ++ ++ P+ L ME GD IE++
Sbjct: 62 LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Length = 200

 Score = 71.9 bits (175), Expect = 7e-17
 Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 12/102 (11%)

Query: 3   EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS 62
            E K     + HINLKV    ++ + FKIKK TPLR+LM A+ +R               
Sbjct: 18  PEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------GKE 65

Query: 63  MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104
           M ++RF +DG  I    TP  L+ME+ D IE +++Q GG  +
Sbjct: 66  MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGGE 107

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} Length = 95

 Score = 67.7 bits (165), Expect = 3e-16
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 4  EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM 63
          E      T     LK+  +  ++V+  ++   PL+ +++                  +S 
Sbjct: 11 EGPTLPETPRLFPLKIRCR-ADLVRLPLRMSEPLQSVVDHMATH-----------LGVSP 58

Query: 64 STVRFRFDGQAINEQDTPSTLEMEEGDTIE 93
          S +   F    ++   TP TL++   D I+
Sbjct: 59 SRILLLFGETELSPTATPRTLKLGVADIID 88

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Length = 82

 Score = 43.0 bits (101), Expect = 7e-07
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRF 70
           + I L +    +  ++  I     ++ L+  YC               +S    +R  F
Sbjct: 7  HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTE-----------VKISFHERIRLEF 55

Query: 71 DGQAINEQDTPSTLEMEEGDTIEI 94
          +G+ ++  D   + E+E+ D + +
Sbjct: 56 EGEWLDPNDQVQSTELEDEDQVSV 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.96
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.96
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.96
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.96
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.95
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.95
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	99.95
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	99.95
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.94
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	99.94
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	99.94
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	99.93
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.93
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.93
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.91
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	99.89
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	99.88
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	99.83
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.8
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.78
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.53
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.5
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.48
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.47
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.47
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.47
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.44
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.44
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.42
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.41
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.39
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.37
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.37
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.37
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.37
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.36
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.35
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.34
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.32
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.32
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.32
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.29
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.28
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.27
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.27
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.27
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.25
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.24
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.24
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.24
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.21
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.21
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.2
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.18
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.18
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.18
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.17
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.13
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.13
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.13
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.12
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.1
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.1
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.69
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.1
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.08
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.06
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.06
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.06
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.05
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.05
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.03
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.01
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.0
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	98.96
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	98.87
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	98.87
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	98.86
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	98.83
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	98.82
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	98.79
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.78
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	98.76
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	98.75
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	98.75
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	98.74
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	98.71
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	98.7
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	98.67
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	98.64
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	98.62
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	98.61
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	98.55
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	98.55
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.52
2kj6_A	97	Tubulin folding cofactor B; methods development, N	98.52
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	98.52
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	98.44
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	98.43
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	98.35
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.33
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.33
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.27
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	97.96
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	97.96
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.35
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.32
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.81
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.43
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	96.13
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.03
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	95.94
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.65
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	95.62
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	95.18
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	94.65
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	94.45
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	94.05
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	93.62
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.84
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	92.53
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	92.42
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	91.69
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	91.13
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	91.12
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	90.46
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	89.62
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	89.28
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	88.57
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	88.55
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	88.48
3u7z_A	101	Putative metal binding protein rumgna_00854; the b	88.47
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	88.11
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	87.95
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	87.85
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	87.68
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	87.63
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	87.63
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	87.5
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	85.46
3ge3_C	84	Toluene-4-monooxygenase system protein B; DIIRON h	82.78
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	82.06
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	81.77
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	81.44
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	80.69

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.96  E-value=1.4e-29  Score=181.86  Aligned_cols=81  Identities=49%  Similarity=0.849  Sum_probs=76.1

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      +.++++|+|+|++++|.+++|+|++++||++||++||++           .|++++++||+|||++|.+++||++|+|||
T Consensus        35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er-----------~Gl~~~~irFlFDG~rI~~~~TP~dL~MED  103 (115)
T 3kyd_D           35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKELGMEE  103 (115)
T ss_dssp             ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCTTSEEEEETTEECCTTCCTTTTTCCT
T ss_pred             CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHH-----------hCCChhhEEEEECCeECCCCCCHHHcCCCC
Confidence            345789999999999999999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecC
Q psy4523          89 GDTIEIYQQQTG  100 (126)
Q Consensus        89 GD~Idv~~~Q~G  100 (126)
                      ||+|||+++|+|
T Consensus       104 gD~IdV~~~Q~G  115 (115)
T 3kyd_D          104 EDVIEVYQEQCG  115 (115)
T ss_dssp             TCEEEEEECCCC
T ss_pred             CCEEEEEeeccC
Confidence            999999999998

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.96  E-value=3.5e-29  Score=177.25  Aligned_cols=89  Identities=44%  Similarity=0.692  Sum_probs=83.3

Q ss_pred             CCccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCC
Q psy4523           1 MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT   80 (126)
Q Consensus         1 ~~~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~T   80 (126)
                      |++++++..+.+++|+|+|++ +|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++|
T Consensus        18 ~~~~~~~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek-----------~gi~~~~~rF~FdG~rl~~~~T   85 (106)
T 2eke_C           18 RGSEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQT   85 (106)
T ss_dssp             CCCCCCCCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCC
T ss_pred             CCcccCCCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHH-----------hCCCcccEEEEECCeEcCCCCC
Confidence            677888888899999999999 9999999999999999999999999           9999999999999999999999


Q ss_pred             ccccCCCCCCEEEEEeeecCC
Q psy4523          81 PSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        81 P~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      |++|+|||||+|+|+++|+||
T Consensus        86 p~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           86 PEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             TTTTTCCTTEEEEEEECC---
T ss_pred             HHHcCCCCCCEEEEEeecccC
Confidence            999999999999999999998

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.96  E-value=1.3e-28  Score=169.65  Aligned_cols=81  Identities=70%  Similarity=1.123  Sum_probs=74.9

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +.+++|+|+|++++|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+||||
T Consensus        13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~dl~medg   81 (93)
T 2d07_B           13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE   81 (93)
T ss_dssp             --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCTTTTTCCTT
T ss_pred             CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHH-----------hCCCccceEEEECCEEcCCCCCHHHcCCCCC
Confidence            45789999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCC
Q psy4523          90 DTIEIYQQQTGG  101 (126)
Q Consensus        90 D~Idv~~~Q~GG  101 (126)
                      |+|||+++|+||
T Consensus        82 D~Idv~~~q~GG   93 (93)
T 2d07_B           82 DTIDVFQQQTGG   93 (93)
T ss_dssp             EEEEEEECC---
T ss_pred             CEEEEEeeccCC
Confidence            999999999998

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.96  E-value=1.5e-28  Score=169.25  Aligned_cols=83  Identities=69%  Similarity=1.079  Sum_probs=79.4

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      ++.|+|+|++++|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+|||||+
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~   71 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT   71 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------TTCCSTTEEEEETTEECCTTCCTTTTTCCTTEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCCE
Confidence            568999999999999999999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCCCcCC
Q psy4523          92 IEIYQQQTGGFKQT  105 (126)
Q Consensus        92 Idv~~~Q~GG~~~~  105 (126)
                      |+|+++|+||+.+-
T Consensus        72 Idv~~~q~gg~~~~   85 (91)
T 2io0_B           72 IDVFQQQTGGVYLE   85 (91)
T ss_dssp             EEEEECCCCCCCCC
T ss_pred             EEEEEeccCCcccc
Confidence            99999999998754

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=2.2e-28  Score=169.01  Aligned_cols=85  Identities=67%  Similarity=1.075  Sum_probs=79.2

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +.+++|+|+|++++|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+||||
T Consensus         3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medg   71 (94)
T 2io1_B            3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE   71 (94)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCTTTTTCCTT
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCCCC
Confidence            45679999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCCcCC
Q psy4523          90 DTIEIYQQQTGGFKQT  105 (126)
Q Consensus        90 D~Idv~~~Q~GG~~~~  105 (126)
                      |+|||+++|+||+...
T Consensus        72 D~Idv~~~~~GG~~~~   87 (94)
T 2io1_B           72 DTIDVFQQQTGGVPES   87 (94)
T ss_dssp             CEEEEEECCEESCCC-
T ss_pred             CEEEEEEeccCCCccc
Confidence            9999999999998755

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.95  E-value=2.3e-28  Score=172.18  Aligned_cols=83  Identities=67%  Similarity=1.057  Sum_probs=80.1

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +.+++|+|+|++++|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+||||
T Consensus        20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medg   88 (104)
T 1wz0_A           20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE   88 (104)
T ss_dssp             SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHH-----------HTCCTTTSCEESSSSBCCTTSCTTTTTCCTT
T ss_pred             CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHHcCCCCC
Confidence            45689999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCCc
Q psy4523          90 DTIEIYQQQTGGFK  103 (126)
Q Consensus        90 D~Idv~~~Q~GG~~  103 (126)
                      |+|+|+++|+||+.
T Consensus        89 D~Idv~~~q~GG~~  102 (104)
T 1wz0_A           89 DTIDVFQQQTSGPS  102 (104)
T ss_dssp             EEEEECCCCCCCSS
T ss_pred             CEEEEEEeccCCCC
Confidence            99999999999975

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.9e-28  Score=186.94  Aligned_cols=90  Identities=42%  Similarity=0.685  Sum_probs=78.6

Q ss_pred             ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523           3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS   82 (126)
Q Consensus         3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~   82 (126)
                      +++||..+++++|+|+|. ++|.+++|+|+++|||++||++||++           .|++++++||+|||++|.+++||+
T Consensus        46 ~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcER-----------qGL~~~sIRFLFDGqRI~~ddTPe  113 (207)
T 3tix_A           46 PEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLTFLYDGIEIQADQTPE  113 (207)
T ss_dssp             ---------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHH-----------TTCCGGGSCEEETTEECCSSCCTT
T ss_pred             CCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHH-----------hCCCcccEEEEECCeecCCCCCHH
Confidence            455665567899999997 58999999999999999999999999           999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEeeecCCCcC
Q psy4523          83 TLEMEEGDTIEIYQQQTGGFKQ  104 (126)
Q Consensus        83 dL~MeDGD~Idv~~~Q~GG~~~  104 (126)
                      +|+|||||+|||+++|+||+..
T Consensus       114 DLdMEDGDtIDV~leQ~GG~~~  135 (207)
T 3tix_A          114 DLDMEDNDIIEAHREQIGGLPS  135 (207)
T ss_dssp             TTTCCTTEEEEECCCCCTTGGG
T ss_pred             HcCCCCCCEEEEEEeccCCCcc
Confidence            9999999999999999999875

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=165.69  Aligned_cols=79  Identities=19%  Similarity=0.309  Sum_probs=74.2

Q ss_pred             CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523           7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM   86 (126)
Q Consensus         7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M   86 (126)
                      ++++.+.+|+|+|++ +|.+++|+||++|||+|||++||++           .|++++++||+|||.||++++||++|+|
T Consensus        14 ~~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r-----------~gv~~~sirFlfDG~rI~~~~TP~~L~m   81 (95)
T 2l76_A           14 TLPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATH-----------LGVSPSRILLLFGETELSPTATPRTLKL   81 (95)
T ss_dssp             CCCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHH-----------HTSCGGGEEEEETTEECCTTSCHHHHTC
T ss_pred             CCCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhh-----------cCCChhhEEEEECCcCCCCCCCHhHcCC
Confidence            346678889999995 7999999999999999999999999           9999999999999999999999999999


Q ss_pred             CCCCEEEEEee
Q psy4523          87 EEGDTIEIYQQ   97 (126)
Q Consensus        87 eDGD~Idv~~~   97 (126)
                      ||||+|||++-
T Consensus        82 eD~DiID~~~~   92 (95)
T 2l76_A           82 GVADIIDCVVL   92 (95)
T ss_dssp             CSSCEEEEEEC
T ss_pred             CCCCEEEEEEe
Confidence            99999999863

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.94  E-value=1.7e-27  Score=169.46  Aligned_cols=86  Identities=40%  Similarity=0.716  Sum_probs=80.5

Q ss_pred             CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523           7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM   86 (126)
Q Consensus         7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M   86 (126)
                      +..+++++|+|+|++++|.+++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+|
T Consensus        19 ~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek-----------~gi~~~~~rfiFdG~~L~~~~Tp~dl~m   87 (110)
T 2k8h_A           19 TCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-----------QGISRNSVRFLFDGTPIDETKTPEELGM   87 (110)
T ss_dssp             CCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHH-----------HTCCSSSCEEESSSCBCCSSSHHHHHHC
T ss_pred             CCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCC
Confidence            34566789999999999999999999999999999999999           9999999999999999999999999999


Q ss_pred             CCCCEEEEEeeecCCCc
Q psy4523          87 EEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        87 eDGD~Idv~~~Q~GG~~  103 (126)
                      ||||+|+|++.|+||--
T Consensus        88 EDgD~Idv~~~q~Gg~~  104 (110)
T 2k8h_A           88 EDDDVIDAMVEQTGGLE  104 (110)
T ss_dssp             SSEEEEEEECCCCCC--
T ss_pred             CCCCEEEEEEcccCccc
Confidence            99999999999999853

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.7e-27  Score=181.85  Aligned_cols=89  Identities=44%  Similarity=0.679  Sum_probs=78.8

Q ss_pred             ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523           3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS   82 (126)
Q Consensus         3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~   82 (126)
                      +++||..+++++|+|+|+ ++|.+++|+|+++|||++||++||++           .|++++++||+|||++|.+++||+
T Consensus        18 ~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er-----------~Gi~~~~~RF~FdG~rI~~~~TP~   85 (200)
T 3pge_A           18 PEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE   85 (200)
T ss_dssp             -------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHH-----------HSSCGGGEEEEETTEECCTTCCTT
T ss_pred             cccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHH-----------hCCChhhEEEEECCEEcCCCCCHH
Confidence            345565567899999997 58999999999999999999999999           999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEeeecCCCc
Q psy4523          83 TLEMEEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        83 dL~MeDGD~Idv~~~Q~GG~~  103 (126)
                      +|+|||||+|+|+++|+||.+
T Consensus        86 dL~MEdgD~Idv~~~q~gg~k  106 (200)
T 3pge_A           86 DLDMEDNDIIEAHREQIGGGG  106 (200)
T ss_dssp             TTTCCTTEEEEEEECCSCCC-
T ss_pred             HcCCCCCCEEEEEeccCcCcC
Confidence            999999999999999999976

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=161.47  Aligned_cols=76  Identities=32%  Similarity=0.651  Sum_probs=72.8

Q ss_pred             CCCCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523           9 KSTDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      .+++++|+|+|++++|. +++|+|+++|||++||++||++           .|++++++||+|||.+|.+++||++|+||
T Consensus        20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-----------~g~~~~~vrF~FDG~rI~~~~TP~dLdME   88 (97)
T 2jxx_A           20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-----------MGLSGRKLSFFFDGTKLSGRELPADLGME   88 (97)
T ss_dssp             CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-----------TTCSSSCCEEEETTEECCSCSCHHHHTCC
T ss_pred             CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-----------HCCCcccEEEEECCEEcCCCCCHHHcCCC
Confidence            45678999999999995 8999999999999999999999           99999999999999999999999999999


Q ss_pred             CCCEEEEE
Q psy4523          88 EGDTIEIY   95 (126)
Q Consensus        88 DGD~Idv~   95 (126)
                      |||+|||+
T Consensus        89 DgD~IDv~   96 (97)
T 2jxx_A           89 SGDLIEVW   96 (97)
T ss_dssp             TTEEEEEE
T ss_pred             CCCEEEEe
Confidence            99999997

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=99.93  E-value=4.5e-28  Score=190.10  Aligned_cols=105  Identities=39%  Similarity=0.656  Sum_probs=9.9

Q ss_pred             ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523           3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS   82 (126)
Q Consensus         3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~   82 (126)
                      -|-||..+++++|+|+| +++|.+++|+|+++|||+|||++||++           .|++++++||+|||++|.+++||+
T Consensus        10 ~~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-----------qGLs~~siRFLFDGqRI~dddTPa   77 (227)
T 3v7o_A           10 GEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE   77 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-----------hCCCccceEEEECCEecCCCCCHH
Confidence            34566677899999999 889999999999999999999999999           999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEeeecCCCcC---CCceeeecc-CCCCCC
Q psy4523          83 TLEMEEGDTIEIYQQQTGGFKQ---TPQLQIWHT-ESNMLD  119 (126)
Q Consensus        83 dL~MeDGD~Idv~~~Q~GG~~~---~~~~~~~~~-~~~~~~  119 (126)
                      +|+|||||+|||+++|+||+.-   -.-|.-||+ +-+.++
T Consensus        78 dL~MEDGDtIDV~leQ~GG~~~~~l~~~a~~~~~~~~~~~~  118 (227)
T 3v7o_A           78 DLDMEDNDIIEAHREQIGGLTLAVLLQIAEHWATRDLRQIE  118 (227)
T ss_dssp             ------------------CCCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HcCCCCCCEEEEEecccCCchHhHHHHHHHHHHhchhhhcc
Confidence            9999999999999999999762   224456776 444443

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.93  E-value=9.3e-26  Score=148.05  Aligned_cols=72  Identities=72%  Similarity=1.140  Sum_probs=70.0

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      +|+|+|++++|++++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+|||||+|+
T Consensus         1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Id   69 (72)
T 1wm3_A            1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID   69 (72)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHH-----------HTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence            5899999999999999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEe
Q psy4523          94 IYQ   96 (126)
Q Consensus        94 v~~   96 (126)
                      |++
T Consensus        70 v~~   72 (72)
T 1wm3_A           70 VFQ   72 (72)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            974

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.93  E-value=1.4e-25  Score=150.07  Aligned_cols=76  Identities=29%  Similarity=0.599  Sum_probs=72.6

Q ss_pred             CCCCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523           9 KSTDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      +..+++|+|+|++++|+ +++|+|+++++|++||++||++           .|++++++||+|||++|.+++||++|+||
T Consensus         2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~~l~me   70 (79)
T 3a4r_A            2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEA-----------MGLSGHKLSFFFDGTKLSGKELPADLGLE   70 (79)
T ss_dssp             TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHH-----------HTCTTCCCEEEETTEECCSCCCHHHHTCC
T ss_pred             CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCC
Confidence            45678999999999996 8999999999999999999999           99999999999999999999999999999


Q ss_pred             CCCEEEEE
Q psy4523          88 EGDTIEIY   95 (126)
Q Consensus        88 DGD~Idv~   95 (126)
                      |||+|||+
T Consensus        71 dgD~Idv~   78 (79)
T 3a4r_A           71 SGDLIEVW   78 (79)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEe
Confidence            99999997

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.91  E-value=4.4e-24  Score=165.07  Aligned_cols=89  Identities=44%  Similarity=0.686  Sum_probs=79.4

Q ss_pred             cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523           4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST   83 (126)
Q Consensus         4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d   83 (126)
                      |-+|....+++|+|||++ +|.+++|+|+++|||++||++||++           .|++.+++||+|||++|++++||++
T Consensus        11 ~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~-----------~g~~~~~~~f~fdG~~i~~~~Tpk~   78 (209)
T 3uf8_A           11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPED   78 (209)
T ss_dssp             -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGCEEEETTEECCTTCCTTT
T ss_pred             cccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHh-----------hCCChheEEEEECCEeccCCCChHH
Confidence            445667788999999998 7899999999999999999999999           9999999999999999999999999


Q ss_pred             cCCCCCCEEEEEeeecCCCcC
Q psy4523          84 LEMEEGDTIEIYQQQTGGFKQ  104 (126)
Q Consensus        84 L~MeDGD~Idv~~~Q~GG~~~  104 (126)
                      |.|||||+|||+.+|+||+.+
T Consensus        79 L~~ed~d~I~~~~eq~Gg~t~   99 (209)
T 3uf8_A           79 LDMEDNDIIEAHREQIGGSTV   99 (209)
T ss_dssp             TTCCTTEEEEEECSCTTCCCC
T ss_pred             hhhcccccchhhccccccccc
Confidence            999999999999999999863

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=99.89  E-value=3.2e-25  Score=183.07  Aligned_cols=90  Identities=42%  Similarity=0.663  Sum_probs=0.0

Q ss_pred             cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523           4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST   83 (126)
Q Consensus         4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d   83 (126)
                      +++|..+.+++|+|+|++ +|.+++|+|++++||++||++||++           .|++.+++||+|||++|.+++||++
T Consensus        20 ~~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~-----------~g~~~~~~~f~f~G~~i~~~~Tp~~   87 (389)
T 4da1_A           20 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQAPED   87 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHH
Confidence            345555578999999998 7889999999999999999999999           9999999999999999999999999


Q ss_pred             cCCCCCCEEEEEeeecCCCcCC
Q psy4523          84 LEMEEGDTIEIYQQQTGGFKQT  105 (126)
Q Consensus        84 L~MeDGD~Idv~~~Q~GG~~~~  105 (126)
                      |+|||||+|+|+++|+||+..+
T Consensus        88 l~med~d~i~~~~~q~gg~n~~  109 (389)
T 4da1_A           88 LDMEDNDIIEAHREQIGGENLY  109 (389)
T ss_dssp             ----------------------
T ss_pred             cCCCCCCEeeeeeccccccccc
Confidence            9999999999999999998754

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=99.88  E-value=1e-24  Score=181.51  Aligned_cols=91  Identities=43%  Similarity=0.692  Sum_probs=2.4

Q ss_pred             ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523           3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS   82 (126)
Q Consensus         3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~   82 (126)
                      -|-|+...++++|+|+|++ +|.+++|+|++++||++||++||++           .|++++++||+|||++|.+++||+
T Consensus        10 ~~~~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r-----------~G~~~~~~rFlFdG~rI~~~~TP~   77 (360)
T 3ix6_A           10 GEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE   77 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHH-----------hCCCcceEEEEECCeECCCCCChH
Confidence            3455667788999999998 6889999999999999999999999           999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEeeecCCCcCC
Q psy4523          83 TLEMEEGDTIEIYQQQTGGFKQT  105 (126)
Q Consensus        83 dL~MeDGD~Idv~~~Q~GG~~~~  105 (126)
                      +|+|||||+|||+++|+||...+
T Consensus        78 ~L~MEDgD~Idv~~~Q~g~~~~Y  100 (360)
T 3ix6_A           78 DLDMEDNDIIEAHREQIGGMRTY  100 (360)
T ss_dssp             -------------------CHHH
T ss_pred             HcCCCccchhhhhhccCchHHHH
Confidence            99999999999999999997644

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=99.83  E-value=2.4e-20  Score=126.20  Aligned_cols=74  Identities=19%  Similarity=0.458  Sum_probs=69.7

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      ..|++-+++.....++|+|++++++.+||++||++           .|++++ .++|.|||.||.+++||+|++|+|||.
T Consensus         8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~-----------~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~   76 (82)
T 3goe_A            8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTE-----------VKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQ   76 (82)
T ss_dssp             CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHH-----------HTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred             HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHH-----------cCCCcCceEEEEEcCcccCccCChhhhCCcCCce
Confidence            47899999888788999999999999999999999           999998 999999999999999999999999999


Q ss_pred             EEEEee
Q psy4523          92 IEIYQQ   97 (126)
Q Consensus        92 Idv~~~   97 (126)
                      |||+++
T Consensus        77 IDvmL~   82 (82)
T 3goe_A           77 VSVVLD   82 (82)
T ss_dssp             EEEEC-
T ss_pred             eeeeeC
Confidence            999874

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.80  E-value=2.1e-19  Score=123.13  Aligned_cols=87  Identities=49%  Similarity=0.833  Sum_probs=77.2

Q ss_pred             cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523           4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST   83 (126)
Q Consensus         4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d   83 (126)
                      ++++.++.+..|.|+|++.+|+.+.|.|++++++..|+++|+++           .|++++.+||+|+|++|.++.|+++
T Consensus        11 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~-----------~gip~~~qrLif~Gk~L~d~~tl~d   79 (97)
T 1wyw_B           11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKE   79 (97)
T ss_dssp             --------CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCHHH
T ss_pred             cccCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCChhhEEEEECCeEcCCCCCHHH
Confidence            34444567778999999999999999999999999999999999           9999999999999999999999999


Q ss_pred             cCCCCCCEEEEEeeecCC
Q psy4523          84 LEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        84 L~MeDGD~Idv~~~Q~GG  101 (126)
                      ++|++||+|++++++.||
T Consensus        80 y~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           80 LGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             HTCCTTCEEEEEESSSCC
T ss_pred             CCCCCCCEEEEEEecCCC
Confidence            999999999999999998

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.78  E-value=1.1e-18  Score=114.00  Aligned_cols=78  Identities=53%  Similarity=0.908  Sum_probs=75.0

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|.|+|++.+|+.+.|+|++++++..|+++|+++           .|++++.+||+|+|++|.++.|+++++|+|||+|
T Consensus         2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-----------~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i   70 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI   70 (79)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------HCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEE
Confidence            47999999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      ++++++.||
T Consensus        71 ~l~~~~~GG   79 (79)
T 2uyz_B           71 EVYQEQTGG   79 (79)
T ss_dssp             EEEECCCC-
T ss_pred             EEEEeccCC
Confidence            999999998

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.53  E-value=8.3e-14  Score=91.79  Aligned_cols=83  Identities=14%  Similarity=0.326  Sum_probs=78.4

Q ss_pred             CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523           8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus         8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      +......|.|.|+..+|..+.+.|.+++++..|++.+++.           .|++++.++|+|+|+.|.++.|..+++++
T Consensus         6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~   74 (88)
T 3dbh_I            6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKIL   74 (88)
T ss_dssp             CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTSBGGGGTCC
T ss_pred             CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcCHHHEEEEECCeECCCCCcHHHcCCC
Confidence            3456678999999989999999999999999999999999           99999999999999999999999999999


Q ss_pred             CCCEEEEEeeecCC
Q psy4523          88 EGDTIEIYQQQTGG  101 (126)
Q Consensus        88 DGD~Idv~~~Q~GG  101 (126)
                      +|++|++++++.||
T Consensus        75 ~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           75 GGSVLHLVLRLRGG   88 (88)
T ss_dssp             TTCEEEECCCCCCC
T ss_pred             CCCEEEEEEeCCCC
Confidence            99999999999998

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.50  E-value=1.3e-13  Score=90.14  Aligned_cols=80  Identities=11%  Similarity=0.258  Sum_probs=72.0

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..|.|.|+..+|..+.+.|.+++++..|++.++++           .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i   70 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSAL   70 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEE
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence            36889999888999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCCCc
Q psy4523          93 EIYQQQTGGFK  103 (126)
Q Consensus        93 dv~~~Q~GG~~  103 (126)
                      ++++++.||..
T Consensus        71 ~l~~rl~GG~g   81 (85)
T 3n3k_B           71 YLLLKLRGGGG   81 (85)
T ss_dssp             EEEECCC----
T ss_pred             EEEEeccCCCC
Confidence            99999999964

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.48  E-value=4.8e-13  Score=87.26  Aligned_cols=80  Identities=13%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..|.|.|+..+|..+.+.|.+++++..|++.++++           .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l   70 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTL   70 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence            46899999998999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCCCc
Q psy4523          93 EIYQQQTGGFK  103 (126)
Q Consensus        93 dv~~~Q~GG~~  103 (126)
                      ++.+++.||..
T Consensus        71 ~l~~r~~GG~g   81 (85)
T 3mtn_B           71 FLLLRLRGGGG   81 (85)
T ss_dssp             EEECCCCCC--
T ss_pred             EEEEECcCCCC
Confidence            99999999864

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=3.3e-13  Score=92.02  Aligned_cols=82  Identities=11%  Similarity=0.277  Sum_probs=74.8

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ...+..|.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++.+||+|+|+.|.++.|..++++++
T Consensus        17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~   85 (98)
T 4hcn_B           17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK   85 (98)
T ss_dssp             -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTCBSGGGTCCT
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------hCCChhHEEEEECCEECCCCCcHHHCCCCC
Confidence            345567999999989999999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecCC
Q psy4523          89 GDTIEIYQQQTGG  101 (126)
Q Consensus        89 GD~Idv~~~Q~GG  101 (126)
                      |++|++.+++.||
T Consensus        86 g~~i~l~~rl~GG   98 (98)
T 4hcn_B           86 ESTLHLVLRLRGG   98 (98)
T ss_dssp             TEEEEEECBCSCC
T ss_pred             CCEEEEEEecCCC
Confidence            9999999999998

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.47  E-value=4.8e-13  Score=85.23  Aligned_cols=76  Identities=14%  Similarity=0.342  Sum_probs=70.5

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|..+.+.+.+++++..|++.+++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL   69 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence            467888888998999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .+++.||
T Consensus        70 ~~~~~GG   76 (76)
T 1ndd_A           70 VLALRGG   76 (76)
T ss_dssp             EECCC--
T ss_pred             EEeCCCC
Confidence            9999997

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.47  E-value=6.2e-13  Score=84.71  Aligned_cols=76  Identities=12%  Similarity=0.314  Sum_probs=72.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.+.+++++..|++..++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~-----------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHL   69 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence            467788888998999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .+++.||
T Consensus        70 ~~~~~GG   76 (76)
T 3a9j_A           70 VLRLRGG   76 (76)
T ss_dssp             EECCCCC
T ss_pred             EEeCCCC
Confidence            9999998

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=85.05  Aligned_cols=77  Identities=10%  Similarity=0.203  Sum_probs=73.5

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..+.|.|++.+|+.+.+.|.+++++..|++..+++           .|++++..||+|+|+.|.++.|.+++++++|++|
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l   71 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV   71 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-----------cCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence            46899999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecC
Q psy4523          93 EIYQQQTG  100 (126)
Q Consensus        93 dv~~~Q~G  100 (126)
                      ++.+++.|
T Consensus        72 ~l~~rl~G   79 (79)
T 3phx_B           72 FMNLRLRG   79 (79)
T ss_dssp             EEEECCBC
T ss_pred             EEEEecCC
Confidence            99999876

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=7.8e-13  Score=87.23  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=76.0

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      ...|.|.|+..+|..+.+.|.+++++..|++.++++           .|++++.++|+|+|+.|.++.|.+++++++|++
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~   73 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-----------QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT   73 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-----------TCCCTTTEEEEETTEECCSSSBHHHHTCCTTEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-----------hCCChHHEEEEECCEEccCCCCHHHCCCCCCCE
Confidence            457999999988988899999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCCC
Q psy4523          92 IEIYQQQTGGF  102 (126)
Q Consensus        92 Idv~~~Q~GG~  102 (126)
                      |++.+++.||.
T Consensus        74 i~l~~~~~GG~   84 (87)
T 1wh3_A           74 LILSKKKGSGP   84 (87)
T ss_dssp             EEEEECSCCCS
T ss_pred             EEEEEeccCCC
Confidence            99999999985

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.44  E-value=9.2e-13  Score=88.47  Aligned_cols=80  Identities=10%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|..+.+.|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|..++++++|++|++
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l   70 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   70 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-----------hCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence            567888888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcCC
Q psy4523          95 YQQQTGGFKQT  105 (126)
Q Consensus        95 ~~~Q~GG~~~~  105 (126)
                      ++++.||....
T Consensus        71 ~~r~~gG~~~~   81 (96)
T 3k9o_B           71 VLRLRGYADLR   81 (96)
T ss_dssp             EECCCC-----
T ss_pred             EEEcCCCCccc
Confidence            99999997743

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.42  E-value=1.5e-12  Score=87.15  Aligned_cols=83  Identities=13%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|++.+|+.+.+.|.+++++..|++..+++           .|++++..||+|+|+.|.++.|.+++++++|++|.+
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l   69 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL   69 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence            467788788999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcCCCce
Q psy4523          95 YQQQTGGFKQTPQL  108 (126)
Q Consensus        95 ~~~Q~GG~~~~~~~  108 (126)
                      .+++.||....+.+
T Consensus        70 ~~rl~Gg~~~~~~~   83 (88)
T 4fbj_B           70 VLALRGGGGLRQKH   83 (88)
T ss_dssp             ECBCC---------
T ss_pred             EEECCCCCCCCccc
Confidence            99999998866544

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.41  E-value=1.9e-12  Score=90.53  Aligned_cols=78  Identities=12%  Similarity=0.294  Sum_probs=74.5

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..|.|.|+..+|+.+.+.|.+++++..|+..++++           .|++++.+||+|+|+.|.++.|..++++++|++|
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I  102 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL  102 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------hCCChHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence            47999999989999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      ++.+++.||
T Consensus       103 ~l~~rl~GG  111 (111)
T 3vdz_A          103 HLVLRLRGG  111 (111)
T ss_dssp             EEEECCCC-
T ss_pred             EEEEecCCC
Confidence            999999998

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=1.7e-12  Score=89.88  Aligned_cols=89  Identities=7%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523           4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST   83 (126)
Q Consensus         4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d   83 (126)
                      .+++....+..|.|.|+..+|+.+.+.|.+++++..|+...+++           .|++++.+||+|+|+.|.++.|..+
T Consensus        13 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~   81 (106)
T 1ttn_A           13 IPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-----------EGVEPGSQRWFFSGRPLTDKMKFEE   81 (106)
T ss_dssp             --------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-----------TCCCSTTCEEEETTEECCTTSHHHH
T ss_pred             CCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-----------HCcCcccEEEEECCEECCCCCcHHH
Confidence            35555667788999999988988899999999999999999999           9999999999999999999999999


Q ss_pred             cCCCCCCEEEEEeeecCCCc
Q psy4523          84 LEMEEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        84 L~MeDGD~Idv~~~Q~GG~~  103 (126)
                      +++++|++|++++.+..+++
T Consensus        82 ygI~~g~ti~lv~~~~~~~~  101 (106)
T 1ttn_A           82 LKIPKDYVVQVIVSQPVQNP  101 (106)
T ss_dssp             CCCSSSCEEEEECCCSSCC-
T ss_pred             cCCCCCCEEEEEEeCCCCCC
Confidence            99999999999998777654

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=7e-12  Score=83.07  Aligned_cols=82  Identities=11%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEeccC-CEEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523          11 TDEHINLKVLGQDN-NVVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g-~~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ....+.|.|+..+| +.+.+ .|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|.+++++++
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~gk~L~d~~tL~~~~i~~   72 (89)
T 1wy8_A            4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-----------FDVRPECQRLFYRGKQLENGYTLFDYDVGL   72 (89)
T ss_dssp             CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-----------SCCCTTTEEEEETTEECCSSSBHHHHTCCT
T ss_pred             CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCeECCCCCCHHHCCCCC
Confidence            44679999998888 68889 599999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecCCCc
Q psy4523          89 GDTIEIYQQQTGGFK  103 (126)
Q Consensus        89 GD~Idv~~~Q~GG~~  103 (126)
                      |++|.+++++.||.+
T Consensus        73 g~~i~l~~~~~gG~~   87 (89)
T 1wy8_A           73 NDIIQLLVRPDSGPS   87 (89)
T ss_dssp             TCEEEEEECCCCSSC
T ss_pred             CCEEEEEEeCCCCCC
Confidence            999999999999864

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.37  E-value=7.3e-12  Score=83.83  Aligned_cols=79  Identities=9%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ......|.|.|+..+|..+.+.|.+++++..|++..+++           .|++++.+||+|+|+.|.++.|..++++++
T Consensus        12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~   80 (91)
T 3v6c_B           12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK   80 (91)
T ss_dssp             CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTCBTGGGTCCT
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-----------hCCChhhEEEEECCeECCCcCcHHHCCCCC
Confidence            345678999999989999999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeee
Q psy4523          89 GDTIEIYQQQ   98 (126)
Q Consensus        89 GD~Idv~~~Q   98 (126)
                      |++|.+.++.
T Consensus        81 g~~i~l~~rl   90 (91)
T 3v6c_B           81 ESTLHLVLRL   90 (91)
T ss_dssp             TCEEEEECCC
T ss_pred             CCEEEEEEec
Confidence            9999998864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=3.6e-12  Score=85.26  Aligned_cols=78  Identities=13%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      -+.|.|+..+|+.+.+.|.+++++..|++..++.           .|++++.+||+|+|+.|.++.|.+++++++|++|.
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~   77 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH   77 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEE
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence            4678888889999999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeeecCCC
Q psy4523          94 IYQQQTGGF  102 (126)
Q Consensus        94 v~~~Q~GG~  102 (126)
                      +.+++.||.
T Consensus        78 l~~r~~GG~   86 (88)
T 1sif_A           78 LVLRLRGGG   86 (88)
T ss_dssp             EEC------
T ss_pred             EEEeCCCCC
Confidence            999999985

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.37  E-value=6e-12  Score=87.71  Aligned_cols=78  Identities=12%  Similarity=0.294  Sum_probs=74.2

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..+.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I  102 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL  102 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEE
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCcCcccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence            57999999988998999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      ++.+++.||
T Consensus       103 ~l~~rl~GG  111 (111)
T 2ojr_A          103 HLVLRLRGG  111 (111)
T ss_dssp             EEEECCCC-
T ss_pred             EEEEeCCCC
Confidence            999999997

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.36  E-value=2.8e-12  Score=85.69  Aligned_cols=80  Identities=11%  Similarity=0.236  Sum_probs=70.8

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..+.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++..||+|+|+.|.++.|.+++++++|++|
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i   71 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV   71 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-----------TCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEE
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-----------hCCChhHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence            36889999888999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecCCCc
Q psy4523          93 EIYQQQTGGFK  103 (126)
Q Consensus        93 dv~~~Q~GG~~  103 (126)
                      .+...+.||.-
T Consensus        72 ~l~~~~~gg~~   82 (88)
T 2hj8_A           72 FMNLRLRGGLE   82 (88)
T ss_dssp             EEEEC------
T ss_pred             EEEEEcCCCcc
Confidence            99999999853

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.35  E-value=1e-11  Score=84.20  Aligned_cols=79  Identities=11%  Similarity=0.293  Sum_probs=72.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.+++++..|++.+++.           .|++++.++|+|+|+.|.++.|.+++++.+|++|.+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-----------~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l   69 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------TCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEE
Confidence            367788888888899999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcC
Q psy4523          95 YQQQTGGFKQ  104 (126)
Q Consensus        95 ~~~Q~GG~~~  104 (126)
                      ..+..||...
T Consensus        70 ~~~~~gG~~i   79 (98)
T 1yx5_B           70 VLRLRGGRDP   79 (98)
T ss_dssp             EECCCCC---
T ss_pred             EEeCCCCCcC
Confidence            9999988653

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.34  E-value=4.7e-12  Score=85.72  Aligned_cols=77  Identities=13%  Similarity=0.219  Sum_probs=71.0

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      ...|.|.|++  |+.+.+.|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|.+++++++|++
T Consensus        17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gst   83 (93)
T 2l7r_A           17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASL-----------EGIAPEDQVVLLAGAPLEDEATLGQCGVEALTT   83 (93)
T ss_dssp             ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHH-----------HTCCGGGCEEEETTEECCTTSBHHHHTCCSSCE
T ss_pred             CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHH-----------hCcChhHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence            4468888887  788899999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCC
Q psy4523          92 IEIYQQQTGG  101 (126)
Q Consensus        92 Idv~~~Q~GG  101 (126)
                      |.+.+++.||
T Consensus        84 I~lv~rl~GG   93 (93)
T 2l7r_A           84 LEVAGRMLGG   93 (93)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEEecCCC
Confidence            9999999998

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=8.6e-12  Score=84.10  Aligned_cols=81  Identities=15%  Similarity=0.285  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ....|.|.|+.. |..+.+.|.+++++..|++.++++           .|++++.+||+|.|+.|.++.|..++++++|+
T Consensus        14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~   81 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY-----------LHCNADRLVLIFTGKILRDQDILSQRGILDGS   81 (96)
T ss_dssp             CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH-----------TCSCTTTBCCEETTEECCTTSCHHHHTCCTTE
T ss_pred             CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCcCCHHHCCCCCCC
Confidence            456899999987 888999999999999999999999           99999999999999999999999999999999


Q ss_pred             EEEEEeeecCCCc
Q psy4523          91 TIEIYQQQTGGFK  103 (126)
Q Consensus        91 ~Idv~~~Q~GG~~  103 (126)
                      +|++++++.||..
T Consensus        82 ~i~l~~~~~~g~~   94 (96)
T 1wx8_A           82 TVHVVVRSHSGPS   94 (96)
T ss_dssp             EEECCBCCSSCSS
T ss_pred             EEEEEEeCCCCCC
Confidence            9999999998854

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.7e-11  Score=79.25  Aligned_cols=78  Identities=14%  Similarity=0.262  Sum_probs=72.3

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ...+..|.|.|+..+|+.+.+.+.+++++..|++..++.           .|++++.++++|+|+.|.++.|.+++++++
T Consensus         2 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-----------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~   70 (81)
T 2dzi_A            2 SSGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-----------LNVPVRQQRLLFKGKALADGKRLSDYSIGP   70 (81)
T ss_dssp             CCSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-----------TCCCTTTCEEEETTEECCTTSBGGGGTCCS
T ss_pred             CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEEEECCeECCCCCcHHHcCCCC
Confidence            345678999999888988899999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEee
Q psy4523          89 GDTIEIYQQ   97 (126)
Q Consensus        89 GD~Idv~~~   97 (126)
                      |++|+++++
T Consensus        71 g~~i~l~~~   79 (81)
T 2dzi_A           71 NSKLNLVVK   79 (81)
T ss_dssp             SBCCEEECC
T ss_pred             CCEEEEEEe
Confidence            999999875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.32  E-value=2.6e-11  Score=80.55  Aligned_cols=80  Identities=9%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +..|.|.|+..+|..+.+.|.+++++..|++..+++           .|++++..||+|+|+.|.++.|..++++ +|++
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~   70 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-----------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV   70 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCeECCCCCCHHHcCC-CCcE
Confidence            457999999999999999999999999999999999           9999999999999999999999999999 8999


Q ss_pred             EEEEeeecCCCc
Q psy4523          92 IEIYQQQTGGFK  103 (126)
Q Consensus        92 Idv~~~Q~GG~~  103 (126)
                      |+++++..++..
T Consensus        71 i~l~~~~~~~~~   82 (90)
T 4dwf_A           71 IHLVERAPPQTH   82 (90)
T ss_dssp             EEEEECCCC---
T ss_pred             EEEEecCCCCCC
Confidence            999999776654

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.29  E-value=3.6e-11  Score=86.04  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ....|+|.|+.. |..+.+.|.+++++..|++.+++.           .|++++.+||+|+|+.|.++.|..++++++|+
T Consensus        29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gs   96 (125)
T 1j8c_A           29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKR-----------FKSQTDQLVLIFAGKILKDQDTLIQHGIHDGL   96 (125)
T ss_dssp             CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHH-----------HCSCSSSEEEEETTEEESTTSCGGGTTCSSSE
T ss_pred             CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHH-----------HCcCcceEEEEECCEEcCCCCCHHHcCCCCCC
Confidence            356799999988 888899999999999999999999           99999999999999999999999999999999


Q ss_pred             EEEEEeeecCCCc
Q psy4523          91 TIEIYQQQTGGFK  103 (126)
Q Consensus        91 ~Idv~~~Q~GG~~  103 (126)
                      +|.++..+.||..
T Consensus        97 tI~lv~~~~gg~~  109 (125)
T 1j8c_A           97 TVHLVIKRDPNSS  109 (125)
T ss_dssp             EEEEEEC------
T ss_pred             EEEEEeccCCCCC
Confidence            9999999998866

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.28  E-value=4e-11  Score=82.62  Aligned_cols=83  Identities=12%  Similarity=0.235  Sum_probs=75.8

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ....|.|+|+...|. +.+.|..++++..|++..+++           .|++++.+||+|+|+.|.++.|..++++++|+
T Consensus        14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~   81 (106)
T 1wx7_A           14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-----------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGL   81 (106)
T ss_dssp             CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHH-----------HTCCTTTEEEEETTEECCTTSCHHHHTCCTTE
T ss_pred             CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHcCCCCCC
Confidence            356799999987775 689999999999999999999           99999999999999999999999999999999


Q ss_pred             EEEEEeeecCCCcCC
Q psy4523          91 TIEIYQQQTGGFKQT  105 (126)
Q Consensus        91 ~Idv~~~Q~GG~~~~  105 (126)
                      +|++++++.||....
T Consensus        82 ~i~l~~~~~~~~~~~   96 (106)
T 1wx7_A           82 TVHLVIKRQHRAMGN   96 (106)
T ss_dssp             EEEEEECCCCCSCCC
T ss_pred             EEEEEEcCCCCCCCC
Confidence            999999999886643

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.27  E-value=3.9e-11  Score=87.05  Aligned_cols=81  Identities=12%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +..|.|.|++.+|+.+.+.|.+++++..|++..+++           .|++++..+|+|+|+.|.++.|.+++++++|++
T Consensus        79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~  147 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST  147 (159)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCCCHHHEEEEECCeecCCCCCHHHcCCCCCCE
Confidence            345888888888999999999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCCCc
Q psy4523          92 IEIYQQQTGGFK  103 (126)
Q Consensus        92 Idv~~~Q~GG~~  103 (126)
                      |++.++..||++
T Consensus       148 l~l~~rl~GG~r  159 (159)
T 3rt3_B          148 VFMNLRLRGGGR  159 (159)
T ss_dssp             EEEEECCC----
T ss_pred             EEEEEecCCCCC
Confidence            999999999963

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.27  E-value=4.4e-11  Score=85.12  Aligned_cols=77  Identities=12%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .+.|.|+..+|..+.+.+.+++++..|++.++++           .|++++..+|+|+|+.|.++.|.+++++++|++|+
T Consensus        76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~  144 (152)
T 3b08_A           76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH  144 (152)
T ss_dssp             CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred             ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence            4677888888999999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeeecCC
Q psy4523          94 IYQQQTGG  101 (126)
Q Consensus        94 v~~~Q~GG  101 (126)
                      +.+++.||
T Consensus       145 l~~r~~GG  152 (152)
T 3b08_A          145 LVLRLRGG  152 (152)
T ss_dssp             EEECCCC-
T ss_pred             EEEecCCC
Confidence            99999998

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=4.8e-11  Score=80.77  Aligned_cols=89  Identities=6%  Similarity=0.170  Sum_probs=77.2

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.+++++..|++..++.+..        .|++++.+||+|+|+.|.++.|.+++++++|++|.+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~--------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l   72 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGK--------DAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV   72 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCT--------TTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhccc--------CCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEE
Confidence            467788778999999999999999999999988110        368999999999999999999999999999999999


Q ss_pred             EeeecCCCcCCCceeee
Q psy4523          95 YQQQTGGFKQTPQLQIW  111 (126)
Q Consensus        95 ~~~Q~GG~~~~~~~~~~  111 (126)
                      .+....|.+..++|.|=
T Consensus        73 ~~~~~~~~~~~~~~~~~   89 (95)
T 1uel_A           73 MVTKPKAVSTPAPATLE   89 (95)
T ss_dssp             EESSCCCCCCCCCGGGG
T ss_pred             EEeCCCCCCCCCccccc
Confidence            99887777777777763

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.25  E-value=7.9e-11  Score=75.42  Aligned_cols=72  Identities=10%  Similarity=0.362  Sum_probs=67.4

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|+. +|..+.+.+.+++++..|++..++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~-----------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l   72 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-----------NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL   72 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------hCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEE
Confidence            7888888 7888889999999999999999999           999999999999999999999999999999999999


Q ss_pred             Eeee
Q psy4523          95 YQQQ   98 (126)
Q Consensus        95 ~~~Q   98 (126)
                      ...+
T Consensus        73 ~~~~   76 (77)
T 2bwf_A           73 VKSQ   76 (77)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            8654

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.24  E-value=6.8e-11  Score=80.41  Aligned_cols=84  Identities=11%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCC
Q psy4523           8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEM   86 (126)
Q Consensus         8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~M   86 (126)
                      |......|.|.|++..+ .+.+.|.+++++..|++..++.           .|++++.+|++|.|+.|.++ .|.+++++
T Consensus         9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~~tL~~ygI   76 (94)
T 2kan_A            9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-----------ENTPIKRMQLYYSGIELADDYRNLNEYGI   76 (94)
T ss_dssp             SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-----------SSSCTTTEEEEETTEEECCTTSBHHHHTC
T ss_pred             cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEEEECCEECCCCcccHHHCCC
Confidence            34556779999998766 7889999999999999999999           99999999999999999999 99999999


Q ss_pred             CCCCEEEEEeeecCCCc
Q psy4523          87 EEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        87 eDGD~Idv~~~Q~GG~~  103 (126)
                      ++|++|.+.++..||..
T Consensus        77 ~~gstl~lv~r~~gg~~   93 (94)
T 2kan_A           77 TEFSEIVVFLKSINRAK   93 (94)
T ss_dssp             CTTEEEEEEECCCSSCC
T ss_pred             CCCCEEEEEEeCCCCCC
Confidence            99999999999999863

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.24  E-value=9.8e-11  Score=75.59  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             cEEEEEEeccCCEE-EEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          14 HINLKVLGQDNNVV-QFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v-~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      .+.|.|+..+|+.+ .+. +.+++++..|++..++.           .|++++..|++|+|+.|.++.|.+++++++|++
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-----------~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~   70 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-----------FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT   70 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTTTTTCCTTCE
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCCHHHcCCCCCCE
Confidence            47888888888886 798 99999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeee
Q psy4523          92 IEIYQQQ   98 (126)
Q Consensus        92 Idv~~~Q   98 (126)
                      |.+.+++
T Consensus        71 i~l~~r~   77 (78)
T 2faz_A           71 IQLLVRQ   77 (78)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9998764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.24  E-value=8.8e-11  Score=81.24  Aligned_cols=76  Identities=11%  Similarity=0.162  Sum_probs=70.6

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ...+-|.|.|.+..|+.+.+++.+++++..|++..+++           .|+++++.|+.|.|+.|.++.|.+++++.||
T Consensus        17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-----------~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dg   85 (93)
T 3plu_A           17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-----------IGTQPNKIVLQKGGSVLKDHISLEDYEVHDQ   85 (93)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBTGGGTCCTT
T ss_pred             CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-----------hCCCHHHEEEEeCCEEccCcCCHHHcCCCCC
Confidence            44678999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEe
Q psy4523          90 DTIEIYQ   96 (126)
Q Consensus        90 D~Idv~~   96 (126)
                      ++|+.+.
T Consensus        86 stLhL~~   92 (93)
T 3plu_A           86 TNLELYY   92 (93)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9999874

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.8e-10  Score=80.96  Aligned_cols=80  Identities=9%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      ..|.|+..+|..+.+.|.+++++..|++..++.           .|++++.+||+|+|+.|.++.|.+++++++|++|.+
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l   78 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHL   78 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEE
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEE
Confidence            567777788999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcCC
Q psy4523          95 YQQQTGGFKQT  105 (126)
Q Consensus        95 ~~~Q~GG~~~~  105 (126)
                      ...+.||....
T Consensus        79 ~~~~~GG~~~~   89 (114)
T 2kdi_A           79 VLRLRGGSMGG   89 (114)
T ss_dssp             EECCCSSCCCS
T ss_pred             EEEcCCCceee
Confidence            99999997643

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=1e-10  Score=80.31  Aligned_cols=81  Identities=12%  Similarity=0.256  Sum_probs=73.9

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ..+..|.|.|+...|. ..+.|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|.+++++++|
T Consensus        18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~g   85 (100)
T 1yqb_A           18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-----------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDG   85 (100)
T ss_dssp             CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBHHHHTCCTT
T ss_pred             CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHCCCCCC
Confidence            3456799999988775 689999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCC
Q psy4523          90 DTIEIYQQQTGGF  102 (126)
Q Consensus        90 D~Idv~~~Q~GG~  102 (126)
                      ++|.+.++..||-
T Consensus        86 stI~l~~r~~~~p   98 (100)
T 1yqb_A           86 LTVHLVIKRQHRA   98 (100)
T ss_dssp             CEEEEEECCCCSC
T ss_pred             CEEEEEEcCCCCC
Confidence            9999999987763

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.20  E-value=2.4e-10  Score=78.54  Aligned_cols=81  Identities=14%  Similarity=0.256  Sum_probs=71.1

Q ss_pred             CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523           7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM   86 (126)
Q Consensus         7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M   86 (126)
                      ........|.|.|+.. |..+.+.|.+++++..|++..++.           .|++++.++|+|+|+.|.++.|.+++++
T Consensus        18 ~~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gI   85 (101)
T 2klc_A           18 YFQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKR-----------FKSHTDQLVLIFAGKILKDQDTLSQHGI   85 (101)
T ss_dssp             -----CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHH-----------HTCCGGGEEEEETTEEECTTCCTGGGTC
T ss_pred             ccCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHcCC
Confidence            3344567899999987 888899999999999999999999           9999999999999999999999999999


Q ss_pred             CCCCEEEEEeeec
Q psy4523          87 EEGDTIEIYQQQT   99 (126)
Q Consensus        87 eDGD~Idv~~~Q~   99 (126)
                      ++|++|.+.....
T Consensus        86 ~~g~~I~l~~~~~   98 (101)
T 2klc_A           86 HDGLTVHLVIKTQ   98 (101)
T ss_dssp             CTTCEEEEEECCS
T ss_pred             CCCCEEEEEEcCC
Confidence            9999999988754

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.18  E-value=1.3e-10  Score=78.19  Aligned_cols=82  Identities=16%  Similarity=0.235  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCCCCCC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEMEEGD   90 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~MeDGD   90 (126)
                      ...|.|.|+..+|..+.+.|.+++++..|++.++++           .   ++.+||+|.|+.|.++ .|.+++++++|+
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----------~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~   70 (95)
T 1wia_A            5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----------Q---ESQMKLIYQGRLLQDPARTLSSLNITNNC   70 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----------T---TTTCEEEETTEECCCSSCBTTTTTCCTTE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----------C---cCcEEEEECCEEccCCcCCHHHcCCCCCC
Confidence            457999999888888899999999999999999988           5   8899999999999999 999999999999


Q ss_pred             EEEEEeeecCCCcCCCc
Q psy4523          91 TIEIYQQQTGGFKQTPQ  107 (126)
Q Consensus        91 ~Idv~~~Q~GG~~~~~~  107 (126)
                      +|++++.+.+.....+.
T Consensus        71 ~i~l~~~~~~~~~~~~~   87 (95)
T 1wia_A           71 VIHCHRSPPGAAVSGPS   87 (95)
T ss_dssp             EEEEECCCCCCCCCCCC
T ss_pred             EEEEEECCCCCCCCCCC
Confidence            99999987776555433

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.18  E-value=1.4e-10  Score=86.62  Aligned_cols=79  Identities=11%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++..|++|+|+.|.++.|..++++++|++|++
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~L   69 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEE
Confidence            467788888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcC
Q psy4523          95 YQQQTGGFKQ  104 (126)
Q Consensus        95 ~~~Q~GG~~~  104 (126)
                      .+++.||..-
T Consensus        70 vlrl~GG~k~   79 (169)
T 3l0w_B           70 VLRLRGGGGE   79 (169)
T ss_dssp             EECCCC---C
T ss_pred             EEEecccccc
Confidence            9999999663

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.18  E-value=2.9e-10  Score=75.16  Aligned_cols=75  Identities=9%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      .+..|.|.|+..+|..+.+.|.+++++..|++..+++           .|++++..|++|.|+.|.++.|..++++ +|+
T Consensus        14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~   81 (88)
T 4eew_A           14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-----------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK   81 (88)
T ss_dssp             -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTE
T ss_pred             CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCCCcHHHcCC-CCc
Confidence            3457999999988999999999999999999999999           9999999999999999999999999999 899


Q ss_pred             EEEEEee
Q psy4523          91 TIEIYQQ   97 (126)
Q Consensus        91 ~Idv~~~   97 (126)
                      +|++.++
T Consensus        82 ~i~lv~R   88 (88)
T 4eew_A           82 VIHLVER   88 (88)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9998753

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.17  E-value=1.5e-10  Score=77.75  Aligned_cols=81  Identities=11%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             CCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhc--cCccceeEEEECCeecCCCCCcccc--C
Q psy4523          12 DEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQ--NLSMSTVRFRFDGQAINEQDTPSTL--E   85 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~--gl~~~~~rF~fdG~rL~~~~TP~dL--~   85 (126)
                      ...|+|.|+..++.  .+.+.+.+++++..|++..++.           .  |++++..|++|.|+.|.++.|.+++  +
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~-----------~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~   73 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV-----------YPERPRPEDQRLIYSGKLLLDHQCLRDLLPK   73 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHH-----------STTCCCTTTCEEEETTEECCSSSCHHHHSCS
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHH-----------hcCCCChHHeEEEECCEECcCcCCHHHHhcC
Confidence            45688999888776  5666677999999999999999           7  9999999999999999999999999  9


Q ss_pred             CCCCCEEEEEeeecCCCc
Q psy4523          86 MEEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        86 MeDGD~Idv~~~Q~GG~~  103 (126)
                      +++|.+|++.+...||.+
T Consensus        74 i~~~~~i~lv~~~~gg~~   91 (93)
T 1wgd_A           74 QEKRHVLHLVCNVKSGPS   91 (93)
T ss_dssp             SSCSEEEEEECCCCCCCC
T ss_pred             CCCCCEEEEEeCCCCCCC
Confidence            999999999999999854

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.13  E-value=2.7e-10  Score=79.16  Aligned_cols=79  Identities=6%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             CcEEEEEEec---cCCEEEEEecC-CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523          13 EHINLKVLGQ---DNNVVQFKIKK-GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        13 ~~I~Ikv~~~---~g~~v~fkIk~-tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ..|+|.|+..   +|..+.+.|.+ ++++..|++..++.           .|++++..+++|.|+.+.++.|.+++++.+
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-----------~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~   94 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-----------IQIPANKQKLSGKAGFLKDNMSLAHYNVGA   94 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-----------TTCCTTTSEEECSSSBCCTTSBTTTTTCSS
T ss_pred             CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEECCCCCcHHHCCCCC
Confidence            4699999987   78888999998 99999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecCCC
Q psy4523          89 GDTIEIYQQQTGGF  102 (126)
Q Consensus        89 GD~Idv~~~Q~GG~  102 (126)
                      |++|.+.++..||.
T Consensus        95 g~~l~l~~r~~GGk  108 (111)
T 1we6_A           95 GEILTLSLRERSGP  108 (111)
T ss_dssp             SCEEEEECSSCCSS
T ss_pred             CCEEEEEEEcCCCC
Confidence            99999999999984

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.13  E-value=3.7e-10  Score=79.01  Aligned_cols=80  Identities=13%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             CcEEEEEEecc----------CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523          13 EHINLKVLGQD----------NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS   82 (126)
Q Consensus        13 ~~I~Ikv~~~~----------g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~   82 (126)
                      ..|+|.|+..+          |+.+.+.|.+++++..|++..++.           .|++++..+++|.|+.|.++.|.+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrL~~~Gk~L~D~~tL~   92 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-----------TGMPAGKQKLQYEGIFIKDSNSLA   92 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-----------SSCCTTTEEEEETTEEECTTSBHH
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-----------HCCChHHEEEEECCEECCCCCCHH
Confidence            47888888753          567889999999999999999999           999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEeeecCCCc
Q psy4523          83 TLEMEEGDTIEIYQQQTGGFK  103 (126)
Q Consensus        83 dL~MeDGD~Idv~~~Q~GG~~  103 (126)
                      ++++.+|++|++.++..||..
T Consensus        93 ~y~i~~g~~i~lv~rl~GGk~  113 (115)
T 1we7_A           93 YYNMASGAVIHLALKERSGPS  113 (115)
T ss_dssp             HHTCCSSCEEEEEECCCSCCS
T ss_pred             HCCCCCCCEEEEEEEcCCCCC
Confidence            999999999999999999853

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.13  E-value=2.9e-10  Score=87.06  Aligned_cols=81  Identities=11%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .+.|.|+..+|..+.+.|.+++++..|++..++.           .|++++.++|+|.|+.|.++.|.+++++++|++|+
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~-----------~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~  173 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH  173 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEE
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhc-----------cCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence            3899999999999999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeeecCCCcCC
Q psy4523          94 IYQQQTGGFKQT  105 (126)
Q Consensus        94 v~~~Q~GG~~~~  105 (126)
                      +.+++.||....
T Consensus       174 LvlrlrGG~~~f  185 (189)
T 3q3f_A          174 LVLRLRGGGQTF  185 (189)
T ss_dssp             ECCCCCCCCCCC
T ss_pred             EEEEcCCCCcce
Confidence            999999998743

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.12  E-value=5.5e-10  Score=82.29  Aligned_cols=84  Identities=12%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ......|.|.|+..+|+.+.+.|.+++++..|+...++.           .|++++..+|+|+|+.|.++.|..++++.+
T Consensus        15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~QrL~~~g~~L~d~~tL~~~~i~~   83 (172)
T 3u30_A           15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK   83 (172)
T ss_dssp             ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTGGGTCCT
T ss_pred             CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCccccccCCHhHcCCcc
Confidence            445678999999988998999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecCCCc
Q psy4523          89 GDTIEIYQQQTGGFK  103 (126)
Q Consensus        89 GD~Idv~~~Q~GG~~  103 (126)
                      |++|.+.+...||..
T Consensus        84 ~~~l~l~~~~~gg~~   98 (172)
T 3u30_A           84 ESTLHLVLRLRGGMQ   98 (172)
T ss_dssp             TCEEEEEECCCCCEE
T ss_pred             cceeeeeeccccccc
Confidence            999999999888743

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.10  E-value=3.3e-10  Score=78.41  Aligned_cols=77  Identities=12%  Similarity=0.256  Sum_probs=68.4

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|+..+|..+.+.|.+++++..|+...+++           .|++++.+||+|.|+.|.++.|..++++++|++|.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~l   70 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-----------ISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVF   70 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-----------TTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEE
Confidence            567888888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCC
Q psy4523          95 YQQQTGGF  102 (126)
Q Consensus        95 ~~~Q~GG~  102 (126)
                      ++......
T Consensus        71 v~~~~~~~   78 (106)
T 3m62_B           71 MVSQKKST   78 (106)
T ss_dssp             ECCC----
T ss_pred             EEcCCCCC
Confidence            98865533

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.10  E-value=4.5e-10  Score=78.41  Aligned_cols=77  Identities=10%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ..+.+.|.|.|++..|+.+.+.|.+++++..|++..+++           .|++++.+||+|.|+.|.++.|.+++++.+
T Consensus        23 ~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-----------~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~   91 (100)
T 1uh6_A           23 EGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-----------TGTRWNKIVLKKWYTIFKDHVSLGDYEIHD   91 (100)
T ss_dssp             SSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCSSCBHHHHTCCT
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCCCCHHHcCCCC
Confidence            344556999999988999999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEe
Q psy4523          89 GDTIEIYQ   96 (126)
Q Consensus        89 GD~Idv~~   96 (126)
                      |++|+++.
T Consensus        92 gstlhL~~   99 (100)
T 1uh6_A           92 GMNLELYY   99 (100)
T ss_dssp             TEEEEEEC
T ss_pred             CCEEEEEe
Confidence            99998864

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.69  E-value=8.4e-12  Score=80.16  Aligned_cols=74  Identities=15%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|++.+|..+.+.+.+++++..|++..++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++.
T Consensus         2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3b1l_X            2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-----------QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV   70 (76)
Confidence            56677777888889999999999999999999           9999999999999999999999999999999999999


Q ss_pred             eeecC
Q psy4523          96 QQQTG  100 (126)
Q Consensus        96 ~~Q~G  100 (126)
                      ++..|
T Consensus        71 ~rlrg   75 (76)
T 3b1l_X           71 QRPRR   75 (76)
Confidence            88765

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.10  E-value=1.4e-09  Score=70.99  Aligned_cols=77  Identities=4%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..|.|.|+..+|..+.+.|.+++++..|++..++++..        .|++++.+||+|+|+.|.++.|.+++++.+|++|
T Consensus         4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~--------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i   75 (85)
T 2wyq_A            4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGR--------DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFV   75 (85)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCT--------TTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEE
T ss_pred             ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccc--------cCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEE
Confidence            46889999888998999999999999999999986100        5789999999999999999999999999999999


Q ss_pred             EEEee
Q psy4523          93 EIYQQ   97 (126)
Q Consensus        93 dv~~~   97 (126)
                      .+...
T Consensus        76 ~l~~~   80 (85)
T 2wyq_A           76 VVMVT   80 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99875

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.08  E-value=9.1e-10  Score=75.49  Aligned_cols=83  Identities=8%  Similarity=0.179  Sum_probs=72.5

Q ss_pred             CCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCC
Q psy4523          12 DEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEM   86 (126)
Q Consensus        12 ~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~M   86 (126)
                      ...+.|.|+...+    +.+.+.|.+++++..|++..++.           .|++++.++++|.|+.|.++ .|.+++++
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~gk~L~D~~~tL~~ygI   73 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----------SGVPAEEAQIVYMEQLLTDDHCSLGSYGL   73 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----------TCCCGGGBCEEETTEEECCSSSBHHHHTC
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-----------HCcChHHeEEEECCEECCCCcccHHHCCC
Confidence            3457777776543    57779999999999999999999           99999999999999999887 69999999


Q ss_pred             CCCCEEEEEeeecCCCcCC
Q psy4523          87 EEGDTIEIYQQQTGGFKQT  105 (126)
Q Consensus        87 eDGD~Idv~~~Q~GG~~~~  105 (126)
                      ++|++|.+.....||....
T Consensus        74 ~~g~~l~l~~~~~gg~~~~   92 (102)
T 1v5o_A           74 KDGDMVVLLQKDNVGLRTP   92 (102)
T ss_dssp             CTTEEEEECBCCCCCCSSC
T ss_pred             CCCCEEEEEECCCCCCCCC
Confidence            9999999999998886544

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.06  E-value=1.4e-09  Score=77.20  Aligned_cols=77  Identities=12%  Similarity=0.320  Sum_probs=71.5

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|..+.+.|.+++++..|++..++.           .|++++..+|+|.|+.|.++.|.+++++.+|++|++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l   69 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChHHeEEEECCeECcCcccHHHhccCCCCeeEE
Confidence            357787778888999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCC
Q psy4523          95 YQQQTGGF  102 (126)
Q Consensus        95 ~~~Q~GG~  102 (126)
                      ...+.||.
T Consensus        70 ~~~~~~~~   77 (152)
T 3b08_A           70 VLRLRGGM   77 (152)
T ss_dssp             EECCTTCE
T ss_pred             Eeeccccc
Confidence            99988774

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-09  Score=78.03  Aligned_cols=79  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             CCCcEEEEEE-eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          11 TDEHINLKVL-GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        11 ~~~~I~Ikv~-~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +...|+|+|+ ...+..+.+.+..+.+++.|++.+++.           .+++.+.+||+|+|+.|.+++|..++++++|
T Consensus        12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~-----------~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g   80 (118)
T 2daf_A           12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHL-----------LGIPHSVLQIRYSGKILKNNETLVQHGVKPQ   80 (118)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHH-----------HTCCTTTEEEEETTEEECSSCCHHHHSCCSS
T ss_pred             cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhh-----------hCCChHHEEEEECCeEcCCcchHHHcCCCCC
Confidence            4456999987 666888999999999999999999999           8999999999999999999999999999999


Q ss_pred             CEEEEEeeecC
Q psy4523          90 DTIEIYQQQTG  100 (126)
Q Consensus        90 D~Idv~~~Q~G  100 (126)
                      .+|++.+...-
T Consensus        81 ~TIhLvi~s~~   91 (118)
T 2daf_A           81 EIVQVEIFSTN   91 (118)
T ss_dssp             CEEEEEEEESC
T ss_pred             CEEEEEEecCC
Confidence            99999987644

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.06  E-value=1.6e-11  Score=87.57  Aligned_cols=78  Identities=12%  Similarity=0.310  Sum_probs=1.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|..+.+.|.+++++..|+...++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l   69 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------hCcChHHEEEEECCEECCCCCchhhhccCCCCEEEE
Confidence            356777778888899999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCc
Q psy4523          95 YQQQTGGFK  103 (126)
Q Consensus        95 ~~~Q~GG~~  103 (126)
                      ++++.||..
T Consensus        70 ~~rl~GG~~   78 (128)
T 3u5e_m           70 VLRLRGGII   78 (128)
T ss_dssp             -------CC
T ss_pred             EEEcCCCCC
Confidence            999999864

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.05  E-value=1.4e-09  Score=75.20  Aligned_cols=79  Identities=11%  Similarity=0.227  Sum_probs=67.8

Q ss_pred             CCCCCcEEEEEEeccCCEEEE--EecCCCcHHHHHHHH-HHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQF--KIKKGTPLRKLMNAY-CERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLE   85 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~f--kIk~tt~l~kL~~~y-~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~   85 (126)
                      ++....|.|.|++..|..+.+  .+.++++...|++.. ++.           .|++++..||+|.|+.|.++.|.++++
T Consensus        14 ~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dy~   82 (98)
T 4a20_A           14 KMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----------KASHISEIKLLLKGKVLHDNLFLSDLK   82 (98)
T ss_dssp             ----CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT-----------SCSCGGGEEEEETTEEECTTCBGGGSC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh-----------cCCChhhEEEEECCEECcCcCCHHHcC
Confidence            345677999999988886655  556999999999998 677           899999999999999999999999999


Q ss_pred             C-CCCCEEEEEeee
Q psy4523          86 M-EEGDTIEIYQQQ   98 (126)
Q Consensus        86 M-eDGD~Idv~~~Q   98 (126)
                      + ++|++|.+++.+
T Consensus        83 I~~~g~ti~lmvsk   96 (98)
T 4a20_A           83 VTPANSTITVMIKP   96 (98)
T ss_dssp             CBTTBCEEEEEECC
T ss_pred             cCCCCCEEEEEEeC
Confidence            9 999999999864

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.05  E-value=1.3e-09  Score=72.59  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee-cCCCCCccccCCCCCCE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA-INEQDTPSTLEMEEGDT   91 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r-L~~~~TP~dL~MeDGD~   91 (126)
                      ..++|.|+...|+.+.+.|.+++++..|++..++.           .|++++..|++|.|+. |.++.|.+++++++|++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~   77 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERS-----------QHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSD   77 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCEEecCCcCCHHHcCCCCCCE
Confidence            46889999889999999999999999999999999           9999999999999999 99999999999999999


Q ss_pred             EEEEee
Q psy4523          92 IEIYQQ   97 (126)
Q Consensus        92 Idv~~~   97 (126)
                      |.+.++
T Consensus        78 i~lv~~   83 (84)
T 2kk8_A           78 IQLEVS   83 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            998764

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.03  E-value=9.5e-10  Score=77.15  Aligned_cols=84  Identities=12%  Similarity=0.172  Sum_probs=73.9

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc---------------ceeEEEECCee
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM---------------STVRFRFDGQA   74 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~---------------~~~rF~fdG~r   74 (126)
                      +.+..++|.|+..+|..+.+.|.++.++..|+++..++           .|+++               ++++|+|.|+.
T Consensus         3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~-----------~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~   71 (105)
T 1v2y_A            3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY-----------VQLKQEREGGVQHISWSYVWRTYHLTSAGEK   71 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HHHHHHHTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred             CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccccCcceeeeeecceeEEEEeCCcC
Confidence            34567999999999999999999999999999999999           65544               57899999999


Q ss_pred             cC-CCCCccccCCCCCCEEEEEeeecCCCcC
Q psy4523          75 IN-EQDTPSTLEMEEGDTIEIYQQQTGGFKQ  104 (126)
Q Consensus        75 L~-~~~TP~dL~MeDGD~Idv~~~Q~GG~~~  104 (126)
                      |. ++.|..++++++|++|.++.+..|-+..
T Consensus        72 L~dD~~tL~dygI~~g~~l~lv~~lr~~~~~  102 (105)
T 1v2y_A           72 LTEDRKKLRDYGIRNRDEVSFIKKLGQKSGP  102 (105)
T ss_dssp             ECCSSSBHHHHTCCSSEEEEEEECSCSCCCC
T ss_pred             ccCCcCCHHHcCCCCCCEEEEEehhccCCCC
Confidence            97 5699999999999999999998887553

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=79.67  Aligned_cols=77  Identities=12%  Similarity=0.307  Sum_probs=67.9

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .+.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++..+++|+|+.|.++.|..++++++|++|+
T Consensus        96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~  164 (172)
T 3u30_A           96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH  164 (172)
T ss_dssp             CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEE
T ss_pred             cccceeecccCcceeEEecCCCCHHHHHHHHHHH-----------hCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEE
Confidence            4667777778899999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeeecCC
Q psy4523          94 IYQQQTGG  101 (126)
Q Consensus        94 v~~~Q~GG  101 (126)
                      +.++..||
T Consensus       165 l~~rlrgG  172 (172)
T 3u30_A          165 LVLRLRGG  172 (172)
T ss_dssp             ECC-----
T ss_pred             EEEecCCC
Confidence            99999987

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.00  E-value=3.6e-11  Score=89.09  Aligned_cols=79  Identities=13%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|+..+|..+.+.|.+++++..|+...++.           .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~L   69 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEE
Confidence            356777777888899999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCCCcC
Q psy4523          95 YQQQTGGFKQ  104 (126)
Q Consensus        95 ~~~Q~GG~~~  104 (126)
                      .+++.||..-
T Consensus        70 vlrl~GGgKk   79 (152)
T 3u5c_f           70 VLRLRGGGKK   79 (152)
T ss_dssp             ----------
T ss_pred             EeeccCCCcC
Confidence            9999999753

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.96  E-value=6e-10  Score=76.69  Aligned_cols=75  Identities=8%  Similarity=0.319  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ++-.|+|+|++ .|+.+.+.|.+++++..|++..+++           .|++++..|++|+|+.|.++.|.+++++++|+
T Consensus        25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~   92 (101)
T 3m63_B           25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-----------NGIPVANQRLIYSGKILKDDQTVESYHIQDGH   92 (101)
T ss_dssp             ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHH-----------HSCCSTTCCEEETTEECCTTSBTTTTTCCTTE
T ss_pred             CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCcCcHHHCCCCCCC
Confidence            34467888887 7888889999999999999999999           99999999999999999999999999999999


Q ss_pred             EEEEEee
Q psy4523          91 TIEIYQQ   97 (126)
Q Consensus        91 ~Idv~~~   97 (126)
                      +|.+...
T Consensus        93 tI~lv~~   99 (101)
T 3m63_B           93 SVHLVKS   99 (101)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            9998764

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=98.87  E-value=1.4e-08  Score=73.06  Aligned_cols=91  Identities=12%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEM   86 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~M   86 (126)
                      ......|.|+|+...|..+.|.|.+++++..|++..++.|...     ...|+  +++.+||+|.|+.|.++.|.+++++
T Consensus        12 ~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~d-----wke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I   86 (125)
T 2gow_A           12 NVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMD-----WEEEQVSSPNILRLIYQGRFLHGNVTLGALKL   86 (125)
T ss_dssp             SCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCS-----CCCCTTCCGGGEEEESSSSEEESSCBTGGGCC
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcc-----cccCCCCChHHEEEEECCcCCCCCCcHHHcCC
Confidence            3455679999999889989999999999999999999842100     00566  4889999999999999999999999


Q ss_pred             CCCC--EEEEEeeecCCCcC
Q psy4523          87 EEGD--TIEIYQQQTGGFKQ  104 (126)
Q Consensus        87 eDGD--~Idv~~~Q~GG~~~  104 (126)
                      .+|+  +|++.++..++.+.
T Consensus        87 ~~~~~~tlhlv~r~~~~~~~  106 (125)
T 2gow_A           87 PFGKTTVMHLVARETLPEPN  106 (125)
T ss_dssp             CTTSEEEEEEEECSCCSSSS
T ss_pred             CCCCceEEEEEecCCCCccc
Confidence            9998  57777887776554

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.87  E-value=7.7e-09  Score=72.09  Aligned_cols=74  Identities=8%  Similarity=0.065  Sum_probs=64.9

Q ss_pred             EEEEEecc----CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          16 NLKVLGQD----NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        16 ~Ikv~~~~----g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +|.|+..+    ++.+.+.|.++++...|++..+++           .|++++.++++|.|+.|.++.|.+++++.+|.+
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-----------~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gst   85 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-----------FGLQENYIKIVINKKQLQLGKTLEEQGVAHNVK   85 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-----------TTCCSTTCEEEETTEECCTTSBHHHHTCCSSEE
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-----------HCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCE
Confidence            44444455    567899999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCC
Q psy4523          92 IEIYQQQTGG  101 (126)
Q Consensus        92 Idv~~~Q~GG  101 (126)
                      | +.+...|.
T Consensus        86 i-~vl~lrg~   94 (100)
T 1wju_A           86 A-MVLELKQS   94 (100)
T ss_dssp             E-EEECCCCC
T ss_pred             E-EEEEECCC
Confidence            9 66665554

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.86  E-value=1e-08  Score=70.87  Aligned_cols=75  Identities=12%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             CcEEEEEEeccC---CEEEEEec--------C-CCcHHHHHHHHHHHhhhhhhhhhhhc--cCccce-eEEEECCeecCC
Q psy4523          13 EHINLKVLGQDN---NVVQFKIK--------K-GTPLRKLMNAYCERCVSILSVLITLQ--NLSMST-VRFRFDGQAINE   77 (126)
Q Consensus        13 ~~I~Ikv~~~~g---~~v~fkIk--------~-tt~l~kL~~~y~~~~~~~~~~~~~~~--gl~~~~-~rF~fdG~rL~~   77 (126)
                      ..|.|.|+..++   ....+.|.        + ++++..|++..+++           .  |++++. .||+|.|+.|.+
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~-----------~~~gip~~~~qrLi~~Gk~L~D   79 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGK-----------LQESVPDPELIDLIYCGRKLKD   79 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHH-----------CTTTCCCSSSEEEEETTEECCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHH-----------hccCCChhhcEEEEECCeECCC
Confidence            457777877767   66778844        4 49999999999999           8  999999 999999999999


Q ss_pred             CCCccccCCCCCCEEEEEeee
Q psy4523          78 QDTPSTLEMEEGDTIEIYQQQ   98 (126)
Q Consensus        78 ~~TP~dL~MeDGD~Idv~~~Q   98 (126)
                      +.|..++++++|++|+++...
T Consensus        80 ~~tL~~y~i~~g~~i~lv~~~  100 (107)
T 1x1m_A           80 DQTLDFYGIQPGSTVHVLRKS  100 (107)
T ss_dssp             TCBHHHHTCCTTCEEEEEESS
T ss_pred             CCcHHHcCCCCCCEEEEEeCC
Confidence            999999999999999998764

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=98.83  E-value=7.2e-09  Score=70.06  Aligned_cols=73  Identities=11%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             EEEEEEeccCCEEEEEec--CCCcHHHHHHHH-HHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-CCCC
Q psy4523          15 INLKVLGQDNNVVQFKIK--KGTPLRKLMNAY-CERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-EEGD   90 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y-~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-eDGD   90 (126)
                      |.|.|++..|..+.+.|.  ++++...|++.. ++.           .|++++..|++|.|+.|.++.|.+++++ .+|.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s   70 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANS   70 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-----------SCSSSTTEEEEETTEECCTTCBHHHHCCCGGGC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-----------cCCChHHEEEEECCEECcCcCCHHHcCCCCCCC
Confidence            578888888887777755  999999999999 888           9999999999999999999999999999 7999


Q ss_pred             EEEEEeee
Q psy4523          91 TIEIYQQQ   98 (126)
Q Consensus        91 ~Idv~~~Q   98 (126)
                      +|.|....
T Consensus        71 tl~v~~~~   78 (87)
T 2lxa_A           71 TITVMIKP   78 (87)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEcCC
Confidence            99998763

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.82  E-value=2.9e-08  Score=65.96  Aligned_cols=65  Identities=11%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523          22 QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        22 ~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      ..|..+.+.+.+++++..|++..++.           .|++++.++++|+|+.|.++.|..++++.+|++|.+...
T Consensus        19 ~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           19 FGGKSIPLSVSPDCTVKDLKSQLQPI-----------TNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             ETTEEEEEEECTTSBHHHHHHHHHHH-----------HCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             ECCEEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            36778889999999999999999999           999999999999999999999999999999999988754

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.79  E-value=4.4e-08  Score=65.31  Aligned_cols=74  Identities=15%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             CCcEEEEEEeccCCEEEEEecCC-----CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC-CCCccccC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKG-----TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE-QDTPSTLE   85 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~t-----t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~-~~TP~dL~   85 (126)
                      ...|+|.|+. .|....+.|.++     .++..|++..++.           .|++++.+|++|.|+.|.+ +.|..+++
T Consensus         5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-----------~gip~~~qrL~~~Gk~L~D~~~~L~~~~   72 (92)
T 1wxv_A            5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEV-----------IGVPQSFQKLIFKGKSLKEMETPLSALG   72 (92)
T ss_dssp             CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHH-----------TCCCTTTCEEEETTEEECCSSSBHHHHT
T ss_pred             CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHH-----------HCcCHHHEEEEECCeecCCCcccHHHCC
Confidence            4579999987 477788999995     9999999999999           9999999999999999998 45899999


Q ss_pred             CCCCCEEEEEee
Q psy4523          86 MEEGDTIEIYQQ   97 (126)
Q Consensus        86 MeDGD~Idv~~~   97 (126)
                      +++|++|.+...
T Consensus        73 i~~g~~i~l~~~   84 (92)
T 1wxv_A           73 IQDGCRVMLIGK   84 (92)
T ss_dssp             CCSSEEEEEESC
T ss_pred             CCCCCEEEEEec
Confidence            999999998764

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.78  E-value=5.7e-08  Score=70.22  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-E-CCeecCCCCCccccCCCCCCEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-F-DGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-f-dG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|.|+..+|..+.+.|.+++++..|++..++.           .|++++..+|+ | .|+.|.++.|.+++++.+|++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l   71 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQK-----------IGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV   71 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHH-----------HCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEE
Confidence            677888788999999999999999999999999           99999999999 9 7999999999999999999999


Q ss_pred             EEEeee-cCC
Q psy4523          93 EIYQQQ-TGG  101 (126)
Q Consensus        93 dv~~~Q-~GG  101 (126)
                      .+.+.+ .++
T Consensus        72 ~l~~~~~~~~   81 (159)
T 3rt3_B           72 LLVVDKSDEP   81 (159)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEccCCCCc
Confidence            999884 444

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.76  E-value=1.4e-07  Score=67.01  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      ...+.|.|+|+...|..+.|.|.+++++..|++..++.|...     ...|+  +++.+||+|.|+.|.++.|.+++++.
T Consensus        12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~d-----wke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~   86 (116)
T 1wgh_A           12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMD-----WEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP   86 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCC-----SSCCCCCCTTTEEEEETTEEECSSCBTTTTTCC
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccc-----cccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence            345679999999889999999999999999999999942100     00454  58999999999999999999999999


Q ss_pred             CCCEEEEEee
Q psy4523          88 EGDTIEIYQQ   97 (126)
Q Consensus        88 DGD~Idv~~~   97 (126)
                      .|+.+-+++.
T Consensus        87 ~~~~~tlhLv   96 (116)
T 1wgh_A           87 FGKTTVMHLV   96 (116)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCceEEEEE
Confidence            8876444433

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.75  E-value=4e-08  Score=66.89  Aligned_cols=74  Identities=8%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             CCCcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ....|+|+|+. .|..+ .+.|..++++..|+...++.           .|++++..|++|.|+.|.++ |.+++++.+|
T Consensus         4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-----------tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g   70 (96)
T 1wgg_A            4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-----------TGVQPARQKVMVKGGTLKDD-DWGNIKMKNG   70 (96)
T ss_dssp             CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-----------TCCCTTTSCCEETTEECCSS-CCCSCCCCSS
T ss_pred             CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCcCCCCC-CHHHCCCCCC
Confidence            34578999985 47777 59999999999999999999           99999999999999999988 9999999999


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      ++|.++..
T Consensus        71 ~~i~l~~~   78 (96)
T 1wgg_A           71 MTVLMMGS   78 (96)
T ss_dssp             CEEECCCC
T ss_pred             CEEEEEec
Confidence            99988654

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=98.75  E-value=2.6e-08  Score=66.77  Aligned_cols=75  Identities=7%  Similarity=0.069  Sum_probs=66.4

Q ss_pred             CCCcEEEEEEeccCCEEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecCCCCCccccCC
Q psy4523          11 TDEHINLKVLGQDNNVVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAINEQDTPSTLEM   86 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~~~~TP~dL~M   86 (126)
                      ....|+|+|+. .|+.+.+ .|.+++++..|++..++.           .|++++..|++   |.|+.|.++.|.+++++
T Consensus         4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-----------~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i   71 (90)
T 1v5t_A            4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-----------TGVLPERQKLLGLKVKGKPAENDVKLGALKL   71 (90)
T ss_dssp             CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-----------TCCCTTTCEEESCEETTEECCTTSBHHHHTC
T ss_pred             CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-----------HCcCHHHeEEEeeccCCcCcCCCCCHHHcCC
Confidence            34567788875 5777778 899999999999999999           99999999999   99999999999999999


Q ss_pred             CCCCEEEEEee
Q psy4523          87 EEGDTIEIYQQ   97 (126)
Q Consensus        87 eDGD~Idv~~~   97 (126)
                      .+|++|.++..
T Consensus        72 ~~g~~l~l~~~   82 (90)
T 1v5t_A           72 KPNTKIMMMGT   82 (90)
T ss_dssp             CTTEEEEEECC
T ss_pred             CCCCEEEEEec
Confidence            99999988643

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.74  E-value=7.4e-08  Score=69.66  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             CCcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc--ceeEEEECCeecCCCCCccccCCCC
Q psy4523          12 DEHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM--STVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~--~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      .+.+.|+|+..+|..+ .+.+.++++...|++..++.|.      +...|+++  +.+||+|.|+.|.++.|.+++++.+
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p------~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~   87 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWP------REKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV   87 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSC------TTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcc------cccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence            3689999999999888 6999999999999999976631      01257765  7999999999999999999999999


Q ss_pred             CC------EEEEEeeecCCCcC
Q psy4523          89 GD------TIEIYQQQTGGFKQ  104 (126)
Q Consensus        89 GD------~Idv~~~Q~GG~~~  104 (126)
                      |+      ++.+.++..||..-
T Consensus        88 ~~~~~~v~tmhlVlrl~g~~kk  109 (126)
T 1se9_A           88 SNLAGAVTTMHVIIQAPVTEKE  109 (126)
T ss_dssp             TSCTTCCEEEEEEECCCSSCCC
T ss_pred             CCccCCcEEEEEEeccCCcccc
Confidence            95      68888888887653

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=98.71  E-value=1.5e-07  Score=66.08  Aligned_cols=74  Identities=9%  Similarity=0.135  Sum_probs=64.9

Q ss_pred             CcEEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-CCC
Q psy4523          13 EHINLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-EEG   89 (126)
Q Consensus        13 ~~I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-eDG   89 (126)
                      =.+.|.|.+..+  ..+.+.|.+++++..|++...++           .|++++..|++|.|+.+.++.|.+++++ ++|
T Consensus        23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k-----------~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G   91 (105)
T 4dbg_A           23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLD-----------YGFPPVLQQWVIGQRLARDQETLHSHGVRQNG   91 (105)
T ss_dssp             EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEEECTTCBTGGGTCCSTT
T ss_pred             EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHH-----------hCCCHHHEEEeccCeEccCcCcHHHcCCCCCC
Confidence            345556666554  57889999999999999999999           9999999999999998899999999999 699


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      ++|..++-
T Consensus        92 ~t~hL~l~   99 (105)
T 4dbg_A           92 DSAYLYLL   99 (105)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEE
Confidence            99999875

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=98.70  E-value=1.6e-07  Score=64.27  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=67.3

Q ss_pred             CCCCCCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ce---ec-CCCC
Q psy4523           8 SKSTDEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQ---AI-NEQD   79 (126)
Q Consensus         8 ~~~~~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~---rL-~~~~   79 (126)
                      |..++..|+|.|.+..+.  .+.++|.++.++..|+....++           .|+++++.|++|.  |+   .| .++.
T Consensus         9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----------~GiP~~~QrL~~~~~g~~~~~L~~D~~   77 (95)
T 2kjr_A            9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----------TGGCAGTMKVQVFKGDTCVSTMDNNDA   77 (95)
T ss_dssp             CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----------HCSCTTTEEEEEEETTEEEEECCCTTS
T ss_pred             ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----------HCcCHHHeEEEEecCCcccceeCCCCC
Confidence            345678999999986553  6789999999999999999999           9999999999997  55   44 7889


Q ss_pred             CccccCCCCCCEEEEE
Q psy4523          80 TPSTLEMEEGDTIEIY   95 (126)
Q Consensus        80 TP~dL~MeDGD~Idv~   95 (126)
                      |..++++++|++|.+.
T Consensus        78 tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           78 QLGYYANSDGLRLHVV   93 (95)
T ss_dssp             BHHHHCCSSSCEEEEE
T ss_pred             CHhHCCcCCCCEEEEE
Confidence            9999999999999875

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=98.67  E-value=1.2e-07  Score=67.77  Aligned_cols=74  Identities=11%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC-------
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME-------   87 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me-------   87 (126)
                      |.|+++.. ...+++.|.+++++..|+...+++           .|++++..||+|+|+.|.++.|..++++.       
T Consensus         3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~-----------egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q   70 (118)
T 2fnj_B            3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGI-----------LKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQ   70 (118)
T ss_dssp             EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTT
T ss_pred             EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCeECCCCCCHHHcCcccccccCC
Confidence            56777653 234789999999999999999999           99999999999999999999999999999       


Q ss_pred             CCCEEEEEeeecCC
Q psy4523          88 EGDTIEIYQQQTGG  101 (126)
Q Consensus        88 DGD~Idv~~~Q~GG  101 (126)
                      ++.+|++.++ .||
T Consensus        71 ~~stL~L~lr-~~g   83 (118)
T 2fnj_B           71 APATVGLAFR-ADD   83 (118)
T ss_dssp             BCEEEEEEEB-SSS
T ss_pred             CCCEEEEEec-CCC
Confidence            7999999998 444

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.64  E-value=5.5e-08  Score=65.91  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      .....|+|+|+. .+..+.+.|.+++++..|++..++.           .|++++.+|++|.|+.| ++.|..++++++|
T Consensus        13 ~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~-----------tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g   79 (95)
T 1v86_A           13 VGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-----------TGLPPAMQKVMYKGLVP-EDKTLREIKVTSG   79 (95)
T ss_dssp             CCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-----------HCSCSTTCCCBSSSBCC-SSSBHHHHCCCTT
T ss_pred             CCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCeeC-CcCcHHHCCCCCC
Confidence            345678899885 5777789999999999999999999           99999999999999999 5569999999999


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      ++|.++..
T Consensus        80 ~~i~lv~~   87 (95)
T 1v86_A           80 AKIMVVGS   87 (95)
T ss_dssp             EEEEECCS
T ss_pred             CEEEEEec
Confidence            99988754

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=98.62  E-value=8.6e-08  Score=66.10  Aligned_cols=74  Identities=8%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc-cceeEEEECCeecCCCCCcccc--C
Q psy4523          11 TDEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS-MSTVRFRFDGQAINEQDTPSTL--E   85 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~-~~~~rF~fdG~rL~~~~TP~dL--~   85 (126)
                      ....|.|+|+..++.  .+.+.+.+++++..|++..++++          .|.+ ++..|++|.|+.|.++.|.+++  +
T Consensus        20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~----------~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~   89 (99)
T 2kdb_A           20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY----------PSKPLTKDQRLVYSGRLLPDHLQLKDILRK   89 (99)
T ss_dssp             ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS----------TTCCCTTTCCEEETTEEECTTSBTHHHHTT
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh----------cCCCChhhEEEEECCEECCCCCCHHHHhcC
Confidence            345699999987776  57888999999999999999861          4555 4999999999999999999999  9


Q ss_pred             CCCCCEEEE
Q psy4523          86 MEEGDTIEI   94 (126)
Q Consensus        86 MeDGD~Idv   94 (126)
                      +++|++|.+
T Consensus        90 I~~~~tihL   98 (99)
T 2kdb_A           90 QDEYHMVHL   98 (99)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCCCEEEe
Confidence            999999876

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=98.61  E-value=2.1e-07  Score=75.85  Aligned_cols=77  Identities=9%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ....|.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++.+|++|.|+.|.++.|.+++++++|+
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~-----------~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gs  298 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES  298 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEeCCeecCCCCCHHHcCCCCCC
Confidence            3467889999888998999999999999999999999           99999999999999999999999999999999


Q ss_pred             EEEEEeee
Q psy4523          91 TIEIYQQQ   98 (126)
Q Consensus        91 ~Idv~~~Q   98 (126)
                      +|.+.+++
T Consensus       299 tL~LvlRL  306 (307)
T 3ai5_A          299 TLHLVLRL  306 (307)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEEeC
Confidence            99998764

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.55  E-value=1.2e-07  Score=65.62  Aligned_cols=75  Identities=11%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEeccCCEEEEEec-CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe-----------e----
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIK-KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ-----------A----   74 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk-~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~-----------r----   74 (126)
                      ....|.|+|++.+|.. .+.|. +++++..|++..+++           .|++++..++.|+|.           .    
T Consensus         4 ~~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~-----------~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~   71 (107)
T 1wf9_A            4 GSSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQ-----------LQIPIHNQTLSTNRNLLLAKSPSDFLAFTDM   71 (107)
T ss_dssp             SCCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHH-----------SCCCTTTCCCBSSGGGGTCCSHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHH-----------hCcCcccCEEEECCccccccCcccccccccc
Confidence            3445889999998865 68899 999999999999999           999999999999988           4    


Q ss_pred             cCCCCCccccCCCCCCEEEEEee
Q psy4523          75 INEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        75 L~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      +.++.|..++++.+||+|.+...
T Consensus        72 l~d~~tL~~~gi~~G~~L~l~~~   94 (107)
T 1wf9_A           72 ADPNLRISSLNLAHGSMVYLAYE   94 (107)
T ss_dssp             CCTTCBGGGTCCCTTCEEECCCS
T ss_pred             CCCCCCHHHCCCCCCCEEEEEeC
Confidence            47889999999999999988766

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.55  E-value=4.1e-07  Score=61.34  Aligned_cols=75  Identities=8%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             CCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC---ee----cCCCCCcc
Q psy4523          11 TDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG---QA----INEQDTPS   82 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG---~r----L~~~~TP~   82 (126)
                      +...|+|.|.+.... ...+++.+++++..|+...+++           .|++++..|++|.|   +.    +.++.|..
T Consensus         4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----------~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~   72 (95)
T 1v6e_A            4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----------VGSPASCMELELYGADDKFYSKLDQEDALLG   72 (95)
T ss_dssp             CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----------TCSCTTTCBCEEECSSSCEEEECCCSSSBTT
T ss_pred             CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----------HCCCHHHeEEEEeCCCCccccccCCCcCCHh
Confidence            345699999886442 5789999999999999999999           99999999999976   43    47889999


Q ss_pred             ccCCCCCCEEEEEe
Q psy4523          83 TLEMEEGDTIEIYQ   96 (126)
Q Consensus        83 dL~MeDGD~Idv~~   96 (126)
                      ++++++|++|+|..
T Consensus        73 ~y~i~~g~~l~v~d   86 (95)
T 1v6e_A           73 SYPVDDGCRIHVID   86 (95)
T ss_dssp             SSSCCTTCEEEEBC
T ss_pred             HCCCCCCCEEEEEE
Confidence            99999999998875

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.52  E-value=1.9e-07  Score=77.59  Aligned_cols=83  Identities=5%  Similarity=0.189  Sum_probs=69.5

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      +..|.|.|+...|+.+.+.|..++++..|++..++.+..        .|++++..||+|.|+.|.++.|..++++++|++
T Consensus         5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~--------~gip~~~QrLiy~GK~L~D~~tL~dygI~~gst   76 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGR--------DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF   76 (368)
T ss_dssp             -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCS--------SSCCSTEEEEESSSSEECSSSBTTTTCCCTTSC
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCc--------CCCChhheEEEECCeecCCcCCHHHcCCCCCCE
Confidence            345788888888888899999999999999999994100        679999999999999999999999999999999


Q ss_pred             E-EEEeeecCCC
Q psy4523          92 I-EIYQQQTGGF  102 (126)
Q Consensus        92 I-dv~~~Q~GG~  102 (126)
                      | .+..+..||.
T Consensus        77 Iv~lv~k~~~~~   88 (368)
T 1oqy_A           77 VVVMVTKTKAGQ   88 (368)
T ss_dssp             EEEEEECCCSSS
T ss_pred             EEEEEecCCCCC
Confidence            8 5555565654

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=98.52  E-value=7.3e-07  Score=61.25  Aligned_cols=77  Identities=6%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             CCCCCcEEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe---e----cCCCC
Q psy4523           9 KSTDEHINLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ---A----INEQD   79 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~---r----L~~~~   79 (126)
                      .-++..|+|.|.+...  ..+.++|.++.++..|+....++           .|+++++.|+.|.|+   .    +.++.
T Consensus         9 ~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----------~Gip~~~QrLi~~g~~g~~~~~L~~D~~   77 (97)
T 2kj6_A            9 SHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----------CGTSVNSMALELYDDSGSKVAVLSDDSR   77 (97)
T ss_dssp             CCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----------HCCCTTSEEEEEECSSSCBCCCSSGGGS
T ss_pred             cCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----------HCcCHHHeEEEEecCCCcccceecCCcC
Confidence            3466789999987554  36889999999999999999999           999999999999883   3    37888


Q ss_pred             CccccCCCCCCEEEEEe
Q psy4523          80 TPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        80 TP~dL~MeDGD~Idv~~   96 (126)
                      |..++++++|++|.+.-
T Consensus        78 tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           78 PLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             CHHHHCCCSCCEEEEEE
T ss_pred             CHHHCCCCCCCEEEEEe
Confidence            99999999999998864

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=98.52  E-value=9.4e-07  Score=63.31  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC------
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE------   88 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD------   88 (126)
                      +-|+|+. .+..+++.+++++++..|+....++           .|++++..||+|+|+.|.++.|.+++++++      
T Consensus         3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~-----------~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q   70 (118)
T 4ajy_B            3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGI-----------LKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ   70 (118)
T ss_dssp             EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred             eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHH-----------HCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence            4455654 2446788999999999999999999           999999999999999999999999999999      


Q ss_pred             -CCEEEEEeee
Q psy4523          89 -GDTIEIYQQQ   98 (126)
Q Consensus        89 -GD~Idv~~~Q   98 (126)
                       +.+|...++.
T Consensus        71 ~~atl~Lvlr~   81 (118)
T 4ajy_B           71 APATVGLAFRA   81 (118)
T ss_dssp             BCEEEEEEECC
T ss_pred             CCCEEEEEEec
Confidence             9999999996

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=6.6e-07  Score=60.12  Aligned_cols=72  Identities=14%  Similarity=0.307  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeccCCEE--EE-EecCCCcHHHHHHHHHH-HhhhhhhhhhhhccCccceeEEEEC--CeecCCCCCccccC
Q psy4523          12 DEHINLKVLGQDNNVV--QF-KIKKGTPLRKLMNAYCE-RCVSILSVLITLQNLSMSTVRFRFD--GQAINEQDTPSTLE   85 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v--~f-kIk~tt~l~kL~~~y~~-~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~~~~TP~dL~   85 (126)
                      -..+.|.|++..|...  .+ .|.+++++..|++..++ +           .|++++..||+|.  |+.|.++.|.++++
T Consensus         8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~-----------~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~   76 (88)
T 2dzj_A            8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH-----------PQWYPARQSLRLDPKGKSLKDEDVLQKLP   76 (88)
T ss_dssp             CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC-----------SSSCTTTCCEESSTTSCCCCTTCBTTTSS
T ss_pred             eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh-----------cCCChHHeEEEecCCCcCcCCCCCHHHcC
Confidence            3458899998877664  47 89999999999999999 5           7899999999987  99999999999999


Q ss_pred             CCCCCEEEE
Q psy4523          86 MEEGDTIEI   94 (126)
Q Consensus        86 MeDGD~Idv   94 (126)
                      +.+|++|.+
T Consensus        77 i~~~stl~~   85 (88)
T 2dzj_A           77 VGTTATLYF   85 (88)
T ss_dssp             CCSEEEEEE
T ss_pred             CCCCCEEEE
Confidence            999999765

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=98.43  E-value=1.8e-06  Score=60.99  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC---ee----cCCCCCcccc
Q psy4523          13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG---QA----INEQDTPSTL   84 (126)
Q Consensus        13 ~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG---~r----L~~~~TP~dL   84 (126)
                      ..|+|.|.+..+. .+.++|.++.++..|+...++.           .|++++..|+.|.|   +.    +.++.|..++
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-----------~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y   73 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----------VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL   73 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----------HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHeEEEEecCCCccccccCCCcCCHHHC
Confidence            4789999886443 5789999999999999999999           99999999999977   42    3788999999


Q ss_pred             CCCCCCEEEEEe
Q psy4523          85 EMEEGDTIEIYQ   96 (126)
Q Consensus        85 ~MeDGD~Idv~~   96 (126)
                      ++++|++|+|..
T Consensus        74 ~i~~g~~ihvvd   85 (122)
T 1t0y_A           74 GVRDGYRIHAVD   85 (122)
T ss_dssp             TCCSSEEEEEEE
T ss_pred             CCCCCCEEEEEe
Confidence            999999999886

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=98.35  E-value=1.7e-06  Score=58.04  Aligned_cols=73  Identities=3%  Similarity=0.032  Sum_probs=62.5

Q ss_pred             cEEEEEEecc--CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-------CCeecCCCCCcccc
Q psy4523          14 HINLKVLGQD--NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-------DGQAINEQDTPSTL   84 (126)
Q Consensus        14 ~I~Ikv~~~~--g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-------dG~rL~~~~TP~dL   84 (126)
                      .|.|.|....  .+....++.++.++..|+.....+           .|+++++.|+.|       .|+.+.++.|..++
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----------~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y   70 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----------FATPPEYMQLQLIDDRGITIEKNMANDKQLGYY   70 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----------SCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----------HCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC
Confidence            3566665432  355679999999999999999999           999999999996       48889999999999


Q ss_pred             CCCCCCEEEEEee
Q psy4523          85 EMEEGDTIEIYQQ   97 (126)
Q Consensus        85 ~MeDGD~Idv~~~   97 (126)
                      +++||.+|++...
T Consensus        71 ~i~~g~~ihlvd~   83 (86)
T 4b6w_A           71 QCRDEFVIHVVDL   83 (86)
T ss_dssp             TCCTTCEEEEEEC
T ss_pred             CCCCCCEEEEEeC
Confidence            9999999998743

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.33  E-value=6.8e-08  Score=74.10  Aligned_cols=73  Identities=12%  Similarity=0.216  Sum_probs=1.9

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|++.+|..+.+.|.+++++..|+...++.           .|+++++.+|+|+|+.|.++.|..     +|++|++.
T Consensus         2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-----------eGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLv   65 (189)
T 2xzm_9            2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-----------MGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLS   65 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-----------hCcChhHEEEEecCeECCCCCccc-----CCCEEEEE
Confidence            46677777888899999999999999999999           999999999999999999988877     99999999


Q ss_pred             eeecCCCcC
Q psy4523          96 QQQTGGFKQ  104 (126)
Q Consensus        96 ~~Q~GG~~~  104 (126)
                      ++..||..-
T Consensus        66 lRLrGG~~k   74 (189)
T 2xzm_9           66 LKLLGGKKK   74 (189)
T ss_dssp             ------CCC
T ss_pred             EecCCCccc
Confidence            999999764

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.33  E-value=6.5e-07  Score=59.24  Aligned_cols=71  Identities=13%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             EEEEEEeccCCEEEEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC---CCCCccccCCCC
Q psy4523          15 INLKVLGQDNNVVQFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN---EQDTPSTLEMEE   88 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~---~~~TP~dL~MeD   88 (126)
                      +.|+|+..+|..+ +. +..++++..|+...++.           .|++++.++|+|.  |+.+.   ++.|.+++++.+
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~-----------~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~   68 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAI-----------TGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQS   68 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHH-----------TCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCT
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHH-----------hCCCccceEEEeCCCCcccccCCCCCCHHHcCCCC
Confidence            3578888888654 67 89999999999999999           9999888888886  57774   678999999999


Q ss_pred             CCEEEEEee
Q psy4523          89 GDTIEIYQQ   97 (126)
Q Consensus        89 GD~Idv~~~   97 (126)
                      |++|.|...
T Consensus        69 g~~l~v~~~   77 (86)
T 2kzr_A           69 GDMLIVEED   77 (86)
T ss_dssp             TCEEECCCC
T ss_pred             CCEEEEEeC
Confidence            999888755

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.27  E-value=6.2e-06  Score=55.57  Aligned_cols=77  Identities=12%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             CCCCcEEEEEEec---cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC-----ee--c-CCC
Q psy4523          10 STDEHINLKVLGQ---DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG-----QA--I-NEQ   78 (126)
Q Consensus        10 ~~~~~I~Ikv~~~---~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG-----~r--L-~~~   78 (126)
                      ..+..|+|.|.+.   ++..+..++.++.++.+|+...+..           .|+++..+++.|.+     ..  + ++.
T Consensus         5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~-----------~gip~~~q~L~~~~~~~~~~~~~L~~d~   73 (97)
T 1wjn_A            5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRL-----------LKVPVSELLLSYESSKMPGREIELENDL   73 (97)
T ss_dssp             SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTT-----------TTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred             ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHH-----------HCCChhHeEEEEEcCCCCceeeccCCCc
Confidence            4566799988763   5678889999999999999999999           99999999999863     12  3 567


Q ss_pred             CCccccCCCCCCEEEEEee
Q psy4523          79 DTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        79 ~TP~dL~MeDGD~Idv~~~   97 (126)
                      .|..+++++|||+|.|...
T Consensus        74 ~~L~~y~i~~G~~I~V~d~   92 (97)
T 1wjn_A           74 QPLQFYSVENGDCLLVRWS   92 (97)
T ss_dssp             SBSGGGTCCTTCEEEEECC
T ss_pred             ccHhhcCCCCCCEEEEEec
Confidence            8899999999999998764

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=97.96  E-value=2.1e-05  Score=63.99  Aligned_cols=73  Identities=8%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecCCCCCccccCCCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +.|+|+|+. .|+.+.+.|.+++++..|+...++.           .|+++...+++   |.|+.+.++.|..++++++|
T Consensus         4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-----------tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g   71 (320)
T 3shq_A            4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-----------TQVRPERQKLLNLKYKGKTAADNVKISALELKPN   71 (320)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--
T ss_pred             ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEeecccCCcccCccccHHHcCCCCC
Confidence            358888886 5788889999999999999999999           99999999999   89999999999999999999


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      .+|.++-.
T Consensus        72 ~~l~L~gs   79 (320)
T 3shq_A           72 FKLMMVGS   79 (320)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEcc
Confidence            99988743

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=4.3e-05  Score=52.74  Aligned_cols=76  Identities=5%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCccccCCCCCCEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      .+.+++.. .|+.+.+.|.+++++..|+...+++           .|++++..+++| .|.++.++.|..++++..|++|
T Consensus         9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-----------tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL   76 (100)
T 2dzm_A            9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-----------LQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSL   76 (100)
T ss_dssp             EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-----------HCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEE
T ss_pred             eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-----------HCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEE
Confidence            45555554 5888899999999999999999999           999999999986 3334888899999999999999


Q ss_pred             EEEee-ecCC
Q psy4523          93 EIYQQ-QTGG  101 (126)
Q Consensus        93 dv~~~-Q~GG  101 (126)
                      .+.+. +++.
T Consensus        77 ~lvl~~~~~~   86 (100)
T 2dzm_A           77 YVLTPDLPPP   86 (100)
T ss_dssp             EECCSSSCCC
T ss_pred             EEEecCCCCC
Confidence            88754 5543

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.35  E-value=0.00069  Score=46.33  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      .-+.|.|.+.+++...++|.++++|..+.+.-|++           .|++++...+.|+++.|+.+..--=.+|-+|..+
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K-----------~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkL   76 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRR-----------QDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKL   76 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHH-----------TTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEE
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH-----------hCCChhhCeEEeCCEeccccceeEecCCCCCCEE
Confidence            34478888899999999999999999999999999           9999999999999999999998888899999998


Q ss_pred             EEEee
Q psy4523          93 EIYQQ   97 (126)
Q Consensus        93 dv~~~   97 (126)
                      +....
T Consensus        77 ELv~~   81 (90)
T 2al3_A           77 EMVPV   81 (90)
T ss_dssp             EEECS
T ss_pred             EEEEc
Confidence            88654

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.32  E-value=0.00015  Score=47.76  Aligned_cols=70  Identities=10%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee-----cCCCCCccccCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA-----INEQDTPSTLEMEE   88 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r-----L~~~~TP~dL~MeD   88 (126)
                      .+.|+|++.+|. ..+.+.+++++..|++..++.           .+++.+...+.+.-.+     ..++.|.+++++..
T Consensus         4 ~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~-----------~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~h   71 (80)
T 2pjh_A            4 SIIIRVQSPDGV-KRITATKRETAATFLKKVAKE-----------FGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKH   71 (80)
T ss_dssp             CCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHH-----------TCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCT
T ss_pred             cEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHH-----------cCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCC
Confidence            478999998883 346688999999999999999           7776555444443332     34788999999999


Q ss_pred             CCEEEEE
Q psy4523          89 GDTIEIY   95 (126)
Q Consensus        89 GD~Idv~   95 (126)
                      ||.|.+.
T Consensus        72 Gd~l~l~   78 (80)
T 2pjh_A           72 GDLLFLF   78 (80)
T ss_dssp             TCCEEC-
T ss_pred             CCEEEEe
Confidence            9998764

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.81  E-value=0.0028  Score=42.35  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=58.3

Q ss_pred             CcEEEEEEe--ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-----ceeEEEECCeecCCCCCccccC
Q psy4523          13 EHINLKVLG--QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-----STVRFRFDGQAINEQDTPSTLE   85 (126)
Q Consensus        13 ~~I~Ikv~~--~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-----~~~rF~fdG~rL~~~~TP~dL~   85 (126)
                      .+|+|.+.-  ..++.+-++|...-++++|.+...+.           .++..     ..+|..-.|..|.++++.++.+
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea-----------~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~   71 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQA-----------QSVSMPPREGHWIRVVNKDKVFSGECKLSDCG   71 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHH-----------SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGT
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHH-----------hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCC
Confidence            467777763  45788889999999999999999988           55543     2456665799999999999999


Q ss_pred             CCCCCEEEE
Q psy4523          86 MEEGDTIEI   94 (126)
Q Consensus        86 MeDGD~Idv   94 (126)
                      +.|||.|++
T Consensus        72 ItnGD~Lei   80 (81)
T 2bps_A           72 ITNGDRLEI   80 (81)
T ss_dssp             CCTTCEEEE
T ss_pred             cCCCCEEEE
Confidence            999999986

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.43  E-value=0.03  Score=36.45  Aligned_cols=72  Identities=4%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeec---CCCCCccccCC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAI---NEQDTPSTLEM   86 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL---~~~~TP~dL~M   86 (126)
                      .+..+|.|+-.+|..+.-+...+++++.|++... .           .+.+...++|.-  =.+.+   +.+.|.+++++
T Consensus         5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~-~-----------~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL   72 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVA-S-----------KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKL   72 (84)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHH-H-----------TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTC
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-H-----------cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCC
Confidence            4577888888999999999999999999888554 4           344566777773  35667   45789999999


Q ss_pred             CCCCEEEEE
Q psy4523          87 EEGDTIEIY   95 (126)
Q Consensus        87 eDGD~Idv~   95 (126)
                      ..++++-|-
T Consensus        73 ~p~a~L~ve   81 (84)
T 3qx1_A           73 FPQETLFLE   81 (84)
T ss_dssp             CSEEEEEEE
T ss_pred             CCCCEEEEE
Confidence            999887764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=96.13  E-value=0.03  Score=38.29  Aligned_cols=52  Identities=8%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             cEEEEEEeccC-CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC
Q psy4523          14 HINLKVLGQDN-NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN   76 (126)
Q Consensus        14 ~I~Ikv~~~~g-~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~   76 (126)
                      +..|+|-+... ...++.|.+++++..++++.+++           .|+++.+.+++|.|+.+.
T Consensus        12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eq-----------TgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQ-----------TKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEEEC
T ss_pred             ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHH-----------hCCCHHHHHHHhCCCccc
Confidence            45677777664 55579999999999999999999           999999999999998766

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.03  E-value=0.047  Score=37.44  Aligned_cols=78  Identities=10%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC--CCCCc
Q psy4523           6 KESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN--EQDTP   81 (126)
Q Consensus         6 ~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~--~~~TP   81 (126)
                      ||+.+....++|.|+-.+|..+.-+...+++++.|++.....            +.....++|.-.  .+.+.  .+.|.
T Consensus        15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~------------~~~~~~f~L~t~fPrk~l~~d~~~TL   82 (109)
T 2cr5_A           15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV------------GYHKSLYRLSTSFPRRALEVEGGSSL   82 (109)
T ss_dssp             CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH------------TCCTTTEEEECSSSCCBCCCCSSCBH
T ss_pred             CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc------------CCCCCCeEEEeCCCCcCCCCCCCCCH
Confidence            444455678999999999999999999999999998865533            344556666532  55564  57999


Q ss_pred             cccCCCCCCEEEEE
Q psy4523          82 STLEMEEGDTIEIY   95 (126)
Q Consensus        82 ~dL~MeDGD~Idv~   95 (126)
                      +++++-...++.|-
T Consensus        83 ~e~gL~p~a~L~Ve   96 (109)
T 2cr5_A           83 EDIGITVDTVLNVE   96 (109)
T ss_dssp             HHHTCSSCEEEEEE
T ss_pred             HHcCCCCCeEEEEE
Confidence            99999998887664

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=95.94  E-value=0.031  Score=35.45  Aligned_cols=57  Identities=25%  Similarity=0.487  Sum_probs=43.4

Q ss_pred             EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.+ ...++..|.+..+.+           .++.  ...+.+..||+.+...+|    -+.|||+|.++.--.||
T Consensus        16 ~e~-~~~tv~~ll~~L~~~-----------~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           16 FFI-KANDLKELRAILQEK-----------EGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             EEE-ECSSHHHHHHHHHTC-----------TTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEECCBCCC
T ss_pred             Eee-CCCcHHHHHHHHHHC-----------cCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEECCCCCC
Confidence            445 568899999988876           5443  257889999999765444    58999999999876666

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.65  E-value=0.2  Score=34.32  Aligned_cols=78  Identities=6%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC---CCCCccc
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN---EQDTPST   83 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~---~~~TP~d   83 (126)
                      .+.....+|.|+-.||..+.-+...+++++.|++.....           .+.....+.|.-.  -+.+.   .+.|.++
T Consensus         8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~-----------~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e   76 (109)
T 2dzk_A            8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQT-----------VGNTYGNFSLATMFPRREFTREDYKRRLLD   76 (109)
T ss_dssp             CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHH-----------HTTSSCSCEEECSSSCCBCCTTTTTSBTGG
T ss_pred             CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-----------cCCCCCceEEEcCCCCcCCcccccCCCHHH
Confidence            444557888888899999999999999999999977776           5555556666543  44454   3689999


Q ss_pred             cCCCCCCEEEEEee
Q psy4523          84 LEMEEGDTIEIYQQ   97 (126)
Q Consensus        84 L~MeDGD~Idv~~~   97 (126)
                      +++-...++.|...
T Consensus        77 lgL~psa~L~v~~~   90 (109)
T 2dzk_A           77 LELAPSASVVLLPA   90 (109)
T ss_dssp             GTCSSEEEEEEECC
T ss_pred             CCCCCceEEEEEEC
Confidence            99999987776654

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=95.62  E-value=0.076  Score=40.81  Aligned_cols=66  Identities=14%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEE-C----CeecCC-CCCccccCCCCCCEEEEEeee
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRF-D----GQAINE-QDTPSTLEMEEGDTIEIYQQQ   98 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~f-d----G~rL~~-~~TP~dL~MeDGD~Idv~~~Q   98 (126)
                      .+.+.+.+.+++..|++.-|+.           .+++.+ .+|++. +    ...|.+ +.|.+++++.+|+.|.+-++.
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~-----------~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~  221 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKL-----------FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN  221 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHH-----------TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred             eEEEEecccCcHHHHHHHHHHH-----------hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence            3458889999999999999999           889886 699997 2    456765 589999999999999998887


Q ss_pred             cCCC
Q psy4523          99 TGGF  102 (126)
Q Consensus        99 ~GG~  102 (126)
                      .-|.
T Consensus       222 ~dg~  225 (231)
T 3jyu_A          222 EDGT  225 (231)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            7664

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=95.18  E-value=0.31  Score=30.59  Aligned_cols=67  Identities=19%  Similarity=0.398  Sum_probs=49.0

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .++|.|.+..+ +..+.+...+++..|.+.               .+++...+.+..||.-+..++     -+.|||.|+
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~---------------l~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~   62 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGE---------------LEIPIETVVVKKNGQIVIDEE-----EIFDGDIIE   62 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHH---------------TTCCTTTEEEEETTEECCTTS-----BCCTTCEEE
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHH---------------hCCCCCCEEEEECCEECCCcc-----cCCCCCEEE
Confidence            37788876532 245677777888888763               445667788999999988665     799999999


Q ss_pred             EEeeecCC
Q psy4523          94 IYQQQTGG  101 (126)
Q Consensus        94 v~~~Q~GG  101 (126)
                      ++.--.||
T Consensus        63 ii~~V~GG   70 (70)
T 1ryj_A           63 VIRVIYGG   70 (70)
T ss_dssp             EEECTTCC
T ss_pred             EEeccccC
Confidence            98764444

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=94.65  E-value=0.095  Score=39.85  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEE-C----CeecCC-CCCccccCCCCCCEEEEEeee
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRF-D----GQAINE-QDTPSTLEMEEGDTIEIYQQQ   98 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~f-d----G~rL~~-~~TP~dL~MeDGD~Idv~~~Q   98 (126)
                      .+.+.+.+.+++..|++.-|+.           .+++.+ .+|++. +    ...|.+ +.|.+++++.+|+.|-+-++.
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~-----------~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKI-----------FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHH-----------TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             ceEEEEcccchHHHHHHHHHHH-----------hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            3568899999999999999999           889876 688885 2    455665 579999999999999998887


Q ss_pred             cCCC
Q psy4523          99 TGGF  102 (126)
Q Consensus        99 ~GG~  102 (126)
                      ..|.
T Consensus       210 ~dg~  213 (217)
T 4a3p_A          210 EDGT  213 (217)
T ss_dssp             CC-C
T ss_pred             CCCC
Confidence            7774

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=94.45  E-value=0.27  Score=34.51  Aligned_cols=74  Identities=9%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeec---CCCCCcccc
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAI---NEQDTPSTL   84 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL---~~~~TP~dL   84 (126)
                      +....++|.|+-.+|..+.-++..+++|..|++... .           .+.....+.|.-  =.+.+   ..+.|..++
T Consensus        39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~-~-----------~~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~  106 (124)
T 1wj4_A           39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQ-S-----------KGYPNERFELLTNFPRRKLSHLDYDITLQEA  106 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHH-H-----------HHCCTTTEEEECSSSCCEETSSCSSSCTTTT
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-h-----------cCCCCCCeEEecCCCCcCCccCCCCCCHHHC
Confidence            345678899998999999999999999999988654 3           334445666663  36666   347899999


Q ss_pred             CCCCCCEEEEE
Q psy4523          85 EMEEGDTIEIY   95 (126)
Q Consensus        85 ~MeDGD~Idv~   95 (126)
                      +|-....+.|.
T Consensus       107 gL~psa~Liv~  117 (124)
T 1wj4_A          107 GLCPQETVFVQ  117 (124)
T ss_dssp             TCCSSBCCEEE
T ss_pred             CCCCceEEEEE
Confidence            99887665553

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.05  E-value=0.15  Score=34.71  Aligned_cols=66  Identities=9%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---CeecCCCCCccccCCCC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQAINEQDTPSTLEMEE   88 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~rL~~~~TP~dL~MeD   88 (126)
                      ..++.+-|..........+|.+.-||..|+-+.|++           ..+++..+.|+-|   ++.|.-+.+..||+|..
T Consensus         8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~K-----------cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A            8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSK-----------CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHH-----------TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhc-----------ccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            357788877766666789999999999999999999           7899999888875   77888899999999986

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=93.62  E-value=0.51  Score=30.38  Aligned_cols=72  Identities=13%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+..+.+....+++.|.+..+.+...+-.-.-...|.-...+.+..||+.+.. +|    -+.|||+|.++.--.||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEECCCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEECCCCCC
Confidence            56678887788999999998887211000000000111234789999999975 33    49999999999887776

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.84  E-value=0.73  Score=30.42  Aligned_cols=72  Identities=15%  Similarity=0.315  Sum_probs=44.9

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+..+.+....++..|.+....+...+-.......|-....+.+..||+.+..     +.-+.|||+|.++.--.||
T Consensus        27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred             CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence            45677887889999999988877211000000001111356789999998863     4458999999998765554

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=92.53  E-value=0.33  Score=32.30  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=44.5

Q ss_pred             CCcEEEEEEeccCCEEEEEecCC-CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKG-TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~t-t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      ...++|.|   +|+.  +.+... .++..|.+.               .++++..+.+..||+.+..+ .-++.-+.|||
T Consensus        18 ~~~M~I~v---NGe~--~el~~~~~Tv~dLL~~---------------L~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD   76 (87)
T 1tyg_B           18 GGRHMLQL---NGKD--VKWKKDTGTIQDLLAS---------------YQLENKIVIVERNKEIIGKE-RYHEVELCDRD   76 (87)
T ss_dssp             ----CEEE---TTEE--ECCSSSCCBHHHHHHH---------------TTCTTSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred             CcceEEEE---CCEE--EECCCCCCcHHHHHHH---------------hCCCCCCEEEEECCEECChh-hcCCcCCCCCC
Confidence            44566666   5553  445565 788887763               44667778899999988753 23344599999


Q ss_pred             EEEEEeeecCC
Q psy4523          91 TIEIYQQQTGG  101 (126)
Q Consensus        91 ~Idv~~~Q~GG  101 (126)
                      .|+++.--.||
T Consensus        77 ~Vei~~~V~GG   87 (87)
T 1tyg_B           77 VIEIVHFVGGG   87 (87)
T ss_dssp             EEEEEEECCC-
T ss_pred             EEEEEcccccC
Confidence            99999764443

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=92.42  E-value=0.4  Score=30.17  Aligned_cols=64  Identities=11%  Similarity=0.172  Sum_probs=41.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +..+. ....++..|.+..+.+...+ .     .-+....+.+..||+.+..     +--+.|||+|.++.--.||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~-~-----~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRW-A-----LALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHH-H-----HHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhH-H-----HHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence            44444 45678999998887662100 0     0122345789999998852     4468999999998776665

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=91.69  E-value=0.4  Score=29.94  Aligned_cols=60  Identities=10%  Similarity=0.230  Sum_probs=42.9

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcccee--EEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTV--RFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~--rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      .+..+.+....++..|.+....+           ..- ...+  .+..||+.+..+     .-+.|||+|+++.--.||
T Consensus        16 ~~~~~~~~~~~tv~~ll~~l~~~-----------~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG   77 (77)
T 2q5w_D           16 AQEDIVLEQALTVQQFEDLLFER-----------YPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG   77 (77)
T ss_dssp             SEEECCCSSCEEHHHHHHHHHHH-----------CGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH-----------Ccc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence            34556666778999999987776           211 1234  788999998753     468999999998765554

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=91.13  E-value=0.24  Score=33.90  Aligned_cols=61  Identities=7%  Similarity=0.212  Sum_probs=39.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC--------------CCCCccccCCCCC
Q psy4523          26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN--------------EQDTPSTLEMEEG   89 (126)
Q Consensus        26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~--------------~~~TP~dL~MeDG   89 (126)
                      .+.+.|.++.+|+.+++..+++-.         ..+...+++...+  |+.|.              -+.+..+|+++||
T Consensus         6 ~~~l~v~~~~TL~~lid~L~~~p~---------~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g   76 (98)
T 1y8x_B            6 PQNIQFSPSAKLQEVLDYLTNSAS---------LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDG   76 (98)
T ss_dssp             CCCEECCTTCBHHHHHHHHHHCTT---------CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTT
T ss_pred             cEEEEECCchhHHHHHHHHHhChH---------hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCC
Confidence            346788999999999999999711         1222223322211  22222              3456789999999


Q ss_pred             CEEEEE
Q psy4523          90 DTIEIY   95 (126)
Q Consensus        90 D~Idv~   95 (126)
                      ++|.|.
T Consensus        77 ~ei~Vt   82 (98)
T 1y8x_B           77 QELAVA   82 (98)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            999985

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=91.12  E-value=1.6  Score=30.57  Aligned_cols=71  Identities=6%  Similarity=0.094  Sum_probs=50.8

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC-CCCccccCCCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE-QDTPSTLEMEEG   89 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~-~~TP~dL~MeDG   89 (126)
                      ...+|.|+-.||..+.-++..+++++.|++......          .+.....+.|.-  =.+.+.+ +.|.+++++-..
T Consensus        51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~----------~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps  120 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR----------PAMAATSFVLMTTFPNKELADENQTLKEANLLNA  120 (127)
T ss_dssp             CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHC----------SGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhC----------cCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence            456666666899999999999999999998776640          233345566654  3566653 689999999886


Q ss_pred             CEEE
Q psy4523          90 DTIE   93 (126)
Q Consensus        90 D~Id   93 (126)
                      -+|.
T Consensus       121 avl~  124 (127)
T 1s3s_G          121 VIVQ  124 (127)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            5543

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=90.46  E-value=0.85  Score=29.18  Aligned_cols=65  Identities=20%  Similarity=0.398  Sum_probs=47.3

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      +|+|++.+.  ....+.+...+++..|.+    .           .|+++..+....||+.+..++      .-+||.|+
T Consensus         2 ~v~Vkl~g~--~~~~~ev~~g~Tv~dLL~----~-----------Lgl~~~~VvV~vNG~~v~~d~------~l~GD~Ve   58 (74)
T 2l32_A            2 NVTVEVVGE--ETSEVAVDDDGTYADLVR----A-----------VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVK   58 (74)
T ss_dssp             EEEEECSSS--SEEEEECSTTCSHHHHHH----T-----------TCCCSSCCCEECCCCCCCTTS------SSCCCCEE
T ss_pred             EEEEEEeCc--cceeEEcCCCCcHHHHHH----H-----------cCCCcceEEEEECCEECCHHH------CCCCCEEE
Confidence            366666532  445678888888887764    4           788888888888999887766      23599999


Q ss_pred             EEeeecCC
Q psy4523          94 IYQQQTGG  101 (126)
Q Consensus        94 v~~~Q~GG  101 (126)
                      +..---||
T Consensus        59 Iv~~V~G~   66 (74)
T 2l32_A           59 VLRLIKGG   66 (74)
T ss_dssp             ECSSCSCC
T ss_pred             EEEeeccc
Confidence            98664444

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=89.28  E-value=1.6  Score=29.48  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             CcEEEEEEeccC---CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          13 EHINLKVLGQDN---NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        13 ~~I~Ikv~~~~g---~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +.|.|.|...--   ..+.+.+...+++..+.++.--.        .....++.+.+.+-.+|+.+.     .+--++||
T Consensus        11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~--------~~~peIdl~~~~V~Vng~~v~-----~d~~L~dG   77 (97)
T 2hj1_A           11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL--------SQFPEIDLSTNKIGIFSRPIK-----LTDVLKEG   77 (97)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH--------HHCTTCCTTTSEEEEEECSCC-----TTCBCCTT
T ss_pred             ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC--------ccCCcccccccEEEEcCEECC-----CCccCCCC
Confidence            467777775432   23457788999999998876531        001356666788888998886     34449999


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      |.|+++--
T Consensus        78 DRVEIyrp   85 (97)
T 2hj1_A           78 DRIEIYRP   85 (97)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEEec
Confidence            99999843

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=88.57  E-value=0.57  Score=33.23  Aligned_cols=58  Identities=14%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             cCCCCCCCcEEEEEEecc------C---------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523           6 KESKSTDEHINLKVLGQD------N---------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF   70 (126)
Q Consensus         6 ~~~~~~~~~I~Ikv~~~~------g---------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f   70 (126)
                      ||..+.--+++|+|.+.+      |         ....|+|.++++|..++...++.           .|++++.+||+.
T Consensus        22 KEr~EahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k~~~~~~~~~~va~~-----------lg~~~~~~RlW~   90 (130)
T 2kvr_A           22 KERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQT-----------MGFPQDQIRLWP   90 (130)
T ss_dssp             CCCCSSTTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCTTSBHHHHHHHHHHH-----------HCCCGGGCEEEE
T ss_pred             HHHHHHhceeEEEEecHHHHHhccCccCcCCccCCcceEEEeccCcHHHHHHHHHHH-----------hCCCcccEEEEE
Confidence            344555668888887522      1         23479999999999999999999           999999999998


Q ss_pred             CCee
Q psy4523          71 DGQA   74 (126)
Q Consensus        71 dG~r   74 (126)
                      =-.|
T Consensus        91 ~~~R   94 (130)
T 2kvr_A           91 MQAR   94 (130)
T ss_dssp             CCCC
T ss_pred             eecC
Confidence            5444

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=88.55  E-value=2.2  Score=27.05  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             EEecCCCcHHHHHHHHHHHhhhhhhh-hhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          29 FKIKKGTPLRKLMNAYCERCVSILSV-LITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~~~~~~-~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.+....++..|.+..+.+...+-.. .....| -...+.+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus        19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG   90 (90)
T 2g1e_A           19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG   90 (90)
T ss_dssp             EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred             EEcCCCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence            45555689999999888772100000 000112 124678999999886321 223348999999998765554

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=88.48  E-value=1  Score=27.61  Aligned_cols=61  Identities=15%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +|+.+  .+....++..|.+..               +++...+.+..||+.+... .-.+--+.|||.|+++.--.||
T Consensus         6 Ng~~~--~~~~~~tv~~ll~~l---------------~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A            6 NDQAM--QCAAGQTVHELLEQL---------------DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             SSCEE--CCCTTCCHHHHHHHH---------------TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred             CCEEE--EcCCCCcHHHHHHHc---------------CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence            45543  445667888777643               4556778899999988753 1123358999999998764444

>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}

Probab=88.47  E-value=1.5  Score=30.04  Aligned_cols=86  Identities=16%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecC-CCcHHHHHHHHHHHhh---h-----hhhhhhhhccCccce-eEEEECCeecCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKK-GTPLRKLMNAYCERCV---S-----ILSVLITLQNLSMST-VRFRFDGQAINEQ   78 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~-tt~l~kL~~~y~~~~~---~-----~~~~~~~~~gl~~~~-~rF~fdG~rL~~~   78 (126)
                      ......|+|.|...++....|.|.+ .+.|..++++-- .++   +     +++|+.....-..+. -.|.-||+.+.  
T Consensus         3 ~~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~-~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--   79 (101)
T 3u7z_A            3 SEGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN-LVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--   79 (101)
T ss_dssp             --CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT-CEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--
T ss_pred             ccceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC-ccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--
Confidence            4456789999999988887777774 334555443222 222   1     111333332222223 34566898887  


Q ss_pred             CCccccCCCCCCEEEEEee
Q psy4523          79 DTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        79 ~TP~dL~MeDGD~Idv~~~   97 (126)
                      .-+.++.++|||.|.+.+.
T Consensus        80 ~Ga~~~~v~dGD~i~~~~t   98 (101)
T 3u7z_A           80 TSADQTPVSDGDAFELTLK   98 (101)
T ss_dssp             SCGGGCBCCTTCEEEEEEE
T ss_pred             hchhheEecCCCEEEEEEe
Confidence            5789999999999998865

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=88.11  E-value=1.8  Score=27.91  Aligned_cols=71  Identities=14%  Similarity=0.217  Sum_probs=43.6

Q ss_pred             EEecCCCcHHHHHHHHHHHhhhhhhhhhhh--ccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          29 FKIKKGTPLRKLMNAYCERCVSILSVLITL--QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~--~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.. ...++..|++..+++...+-......  .|--...+.+..||+.+...+-+ +.-+.|||+|.++.--.||
T Consensus        21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG   93 (93)
T ss_dssp             EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred             Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence            443 45799999999988721100000000  11112358899999998753222 2348999999999887776

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.95  E-value=1.7  Score=28.85  Aligned_cols=47  Identities=17%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG   72 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG   72 (126)
                      ..++|||...  ..+.++|.+..++..|.+..+++           .+++.+.++|.|.-
T Consensus         4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~k-----------L~l~~~~~~LsYk~   50 (83)
T 1oey_A            4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKK-----------LELRLEHTKLSYRP   50 (83)
T ss_dssp             SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHH-----------TTCCGGGCCEEECC
T ss_pred             CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHH-----------hCCCcceeEEEeeC
Confidence            3589999886  67899999999999999999999           88888888888853

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=87.85  E-value=0.3  Score=31.64  Aligned_cols=65  Identities=12%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc-cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS-MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~-~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +|+...+..+...++..|.+    .           .|++ +..+-.-.||.-|.. ..-++.-+.|||.|+++.---||
T Consensus         6 NGe~~e~~~~~~~Tl~~LL~----~-----------l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG   69 (78)
T 2k5p_A            6 NGKPSTVDGAESLNVTELLS----A-----------LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGG   69 (78)
T ss_dssp             TTEEEECSSCSCEEHHHHHH----H-----------HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCS
T ss_pred             CCEEEEcCCCCCCcHHHHHH----H-----------cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCC
Confidence            45544332115678887765    3           5666 777778899988865 44455678999999998875566


Q ss_pred             Cc
Q psy4523         102 FK  103 (126)
Q Consensus       102 ~~  103 (126)
                      ..
T Consensus        70 ~~   71 (78)
T 2k5p_A           70 KL   71 (78)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=87.68  E-value=3  Score=27.43  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             CEEEEEec--CCCcHHHHHHHHHHHhhh-hhhhh-hhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q psy4523          25 NVVQFKIK--KGTPLRKLMNAYCERCVS-ILSVL-ITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG  100 (126)
Q Consensus        25 ~~v~fkIk--~tt~l~kL~~~y~~~~~~-~~~~~-~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~G  100 (126)
                      .+..+.+.  ...+++.|.+..+++... +-... -...|--...+.+..||..+..... .+.-++|||+|.++.--.|
T Consensus        20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G   98 (99)
T 2qjl_A           20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG   98 (99)
T ss_dssp             CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred             cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence            44556665  578999999998887210 00000 0000111123568889987652111 2234899999999887666


Q ss_pred             C
Q psy4523         101 G  101 (126)
Q Consensus       101 G  101 (126)
                      |
T Consensus        99 G   99 (99)
T 2qjl_A           99 G   99 (99)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=87.63  E-value=3.6  Score=27.43  Aligned_cols=62  Identities=8%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECC--eecCCCCCccccCCCCCCEEEEEee
Q psy4523          28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDG--QAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG--~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      -+-|...++|..+-++.+-.+++        .-+   +-..++.+++|  +.+..+.|.++.+|..-|.|||+.+
T Consensus        16 LV~VDt~dTmdqVA~kvA~HsVG--------rRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~   82 (83)
T 2inc_C           16 LVPVDTEDTMDQVAEKCAYHSIN--------RRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM   82 (83)
T ss_dssp             EEEECTTCBHHHHHHHHHTTTBT--------TTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred             EEEecCCCcHHHHHHHHhhhhcc--------eecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence            47788889999999998888543        222   22368999999  9999999999999999999999864

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=87.63  E-value=1.4  Score=26.80  Aligned_cols=60  Identities=15%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +|+++.  + ...++..|.+.               .++++..+.+..||+.+..+ .-.+.-+.|||.|+++.--.||
T Consensus         5 Ng~~~~--~-~~~tv~~ll~~---------------l~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG   64 (64)
T 2cu3_A            5 NGEPRP--L-EGKTLKEVLEE---------------MGVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG   64 (64)
T ss_dssp             TTEEEC--C-TTCCHHHHHHH---------------HTBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred             CCEEEE--c-CCCcHHHHHHH---------------cCCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence            455443  4 56777777664               34556778899999988753 2223468999999999764444

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=87.50  E-value=1.3  Score=31.58  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER   47 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~   47 (126)
                      .|+|+-.||....+.|..+.+...++...|++
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~k   44 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR   44 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHH
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHH
Confidence            46666689999999999999999999999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=85.46  E-value=1.4  Score=29.80  Aligned_cols=67  Identities=12%  Similarity=0.245  Sum_probs=42.9

Q ss_pred             CCccccCCCCCCCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe--e
Q psy4523           1 MTEEKKESKSTDEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ--A   74 (126)
Q Consensus         1 ~~~~~~~~~~~~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~--r   74 (126)
                      |+++.   +.+.++|+|+++...+    ....|.|..+.++..++....++           ..++  .+ |+|-+.  .
T Consensus         3 ~~~~~---~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkr-----------L~l~--al-Flyvn~~~~   65 (96)
T 1wz3_A            3 MATES---PNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQ-----------LHSD--SL-FVYVNSAFS   65 (96)
T ss_dssp             ------------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHH-----------HTCS--SC-EEEEEEEEC
T ss_pred             cCCCC---CCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHh-----------cCCc--eE-EEEECCccc
Confidence            55533   4557789999987533    23479999999999999999999           6665  43 555444  3


Q ss_pred             cCCCCCcccc
Q psy4523          75 INEQDTPSTL   84 (126)
Q Consensus        75 L~~~~TP~dL   84 (126)
                      -..++|..+|
T Consensus        66 Ps~d~~m~~L   75 (96)
T 1wz3_A           66 PNPDESVIDL   75 (96)
T ss_dssp             CCTTSBHHHH
T ss_pred             CChhhHHHHH
Confidence            4456777776

>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*

Probab=82.78  E-value=5.2  Score=26.71  Aligned_cols=62  Identities=10%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCee--cCCCCCccccCCCCCCEEEEEe
Q psy4523          27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQA--INEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~r--L~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      .-+-|...+++..+-++.+..+++        .-+  .+..+|...+|..  +..+.|.++.|+..-|.|+++.
T Consensus        17 ~Lv~VDt~dtmdqVA~k~A~h~VG--------rrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~   82 (84)
T 3ge3_C           17 QLVVVDLNDSMDQVAEKVAYHCVN--------RRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF   82 (84)
T ss_dssp             EEEEEETTCBHHHHHHHHHHTTBT--------TTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred             EEEEecCCCcHHHHHHHHhhhhcc--------eeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence            347888999999999999988643        112  1347999999999  9999999999999999999975

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=82.06  E-value=14  Score=28.41  Aligned_cols=63  Identities=8%  Similarity=0.190  Sum_probs=46.1

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE--CCee--cCCCCCccccC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF--DGQA--INEQDTPSTLE   85 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f--dG~r--L~~~~TP~dL~   85 (126)
                      .+..|.++|.-.|| .+.|.|...++-+.|++..|++           .|+.. +-+-+.|  +|..  |..+.+..+.+
T Consensus        19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~-----------l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~   86 (314)
T 1h4r_A           19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRT-----------LGLRETWFFGLQYTIKDTVAWLKMDKKVLDHD   86 (314)
T ss_dssp             --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHH-----------HTCCCGGGEEEEEEETTEEEECCTTSBGGGSS
T ss_pred             CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHH-----------hCCCCCccceEEEEeCCcCeeCCCccCHHHcC
Confidence            46789999999998 7889999999999999999999           77753 3344444  4543  56666655544

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=81.77  E-value=3.5  Score=35.16  Aligned_cols=76  Identities=17%  Similarity=0.277  Sum_probs=58.0

Q ss_pred             CCCcEEEEEEecc--CCEE----EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC------CeecC-C
Q psy4523          11 TDEHINLKVLGQD--NNVV----QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD------GQAIN-E   77 (126)
Q Consensus        11 ~~~~I~Ikv~~~~--g~~v----~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd------G~rL~-~   77 (126)
                      ....|-|.++..|  ...+    ++-|++++++..|....+++           .|+++++=-.+|.      -.+|. .
T Consensus       127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~-----------~g~p~dt~l~lyEEi~~~~ie~l~~~  195 (530)
T 2ylm_A          127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDR-----------AGFIQDTSLILYEEVKPNLTERIQDY  195 (530)
T ss_dssp             TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHH-----------HTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred             CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH-----------cCCCCCCceEEEEecCCCceeEcccc
Confidence            4456777777554  4555    48899999999999999999           8998876444454      45677 7


Q ss_pred             CCCcccc--CCCCCCEEEEEee
Q psy4523          78 QDTPSTL--EMEEGDTIEIYQQ   97 (126)
Q Consensus        78 ~~TP~dL--~MeDGD~Idv~~~   97 (126)
                      +.|..+.  ++.|||+|-+-..
T Consensus       196 ~~t~~~~~~eL~~GdII~fQ~~  217 (530)
T 2ylm_A          196 DVSLDKALDELMDGDIIVFQKD  217 (530)
T ss_dssp             SSBHHHHSTTCCTTEEEEEEEC
T ss_pred             cccHHHHHhcccCCCEEEEEec
Confidence            8999999  9999997655544

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=81.44  E-value=5.4  Score=26.25  Aligned_cols=66  Identities=15%  Similarity=0.285  Sum_probs=38.7

Q ss_pred             CCcHHHHHHHHHHHhhhhhhhhhhhccCcccee-------EEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          34 GTPLRKLMNAYCERCVSILSVLITLQNLSMSTV-------RFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~-------rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      ..++..|.+..+.+...+-.... ..|--...+       .+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus        27 ~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG   99 (99)
T 2l52_A           27 GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG   99 (99)
T ss_dssp             CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred             CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence            68999999988877210000000 011001124       7899999885332 223358999999998765554

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=80.69  E-value=4.9  Score=24.31  Aligned_cols=61  Identities=10%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      ++|...+|..  +.+...+++..|...+...             +....+--..||+.+..+     -.+++||.|++..
T Consensus         3 i~i~~p~g~~--~~~~~g~T~~dla~~i~~~-------------l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt   62 (73)
T 2kmm_A            3 VMVFTPKGEI--KRLPQGATALDFAYSLHSD-------------LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS   62 (73)
T ss_dssp             EEEECTTCCE--EEECTTCBHHHHHHHHCSH-------------HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred             EEEEcCCCCE--EEcCCCCcHHHHHHHHhhc-------------cccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence            4444456765  4555678887776654222             223345557799877663     4567899998875


Q ss_pred             e
Q psy4523          97 Q   97 (126)
Q Consensus        97 ~   97 (126)
                      -
T Consensus        63 ~   63 (73)
T 2kmm_A           63 S   63 (73)
T ss_dssp             C
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1wm3a_	72	d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId:	7e-30
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	3e-27
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	5e-23

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 7e-30
 Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 11/83 (13%)

Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
          HINLKV GQD +VVQFKIK+ TPL KLM AYCER           Q LSM  +RFRFDGQ
Sbjct: 1  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQ 49

Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
           INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (234), Expect = 3e-27
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 11/88 (12%)

Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
           E+I LKV+GQD++ + FK+K  T L+KL  +YC+R           Q + M+++RF F+G
Sbjct: 1   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49

Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTG 100
           Q I +  TP  L MEE D IE+YQ+QTG
Sbjct: 50  QRIADNHTPKELGMEEEDVIEVYQEQTG 77

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 83.3 bits (206), Expect = 5e-23
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 12/89 (13%)

Query: 13  EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
            HINLKV    ++ + FKIKK TPLR+LM A+ +R           Q   M ++RF +DG
Sbjct: 3   THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDG 50

Query: 73  QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
             I    TP  L+ME+ D IE +++Q GG
Sbjct: 51  IRIQADQTPEDLDMEDNDIIEAHREQIGG 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.94
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.93
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.32
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.32
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.31
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.29
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.26
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.26
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.23
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.22
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.19
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.18
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.18
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.18
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.16
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.15
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.1
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.1
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.09
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.04
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	98.99
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	98.99
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	98.98
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	98.97
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	98.97
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	98.93
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	98.89
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	98.78
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	98.72
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	98.62
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	98.57
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	98.56
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.46
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	98.43
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.07
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.47
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.92
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.43
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.42
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.94
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	94.38
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.2
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	92.35
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.83
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	90.59
d1v8ca1	87	MoaD-related protein, N-terminal domain {Thermus t	86.0
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	85.75

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2e-27  Score=156.58  Aligned_cols=77  Identities=52%  Similarity=0.891  Sum_probs=75.3

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ++|+|+|++++|++++|+|++++||++||++||++           .|+++++++|+|||++|.+++||++|+|||||+|
T Consensus         1 e~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~-----------~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~I   69 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI   69 (77)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCChhHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence            47999999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecC
Q psy4523          93 EIYQQQTG  100 (126)
Q Consensus        93 dv~~~Q~G  100 (126)
                      +|+++|+|
T Consensus        70 dv~~~q~G   77 (77)
T d2uyzb1          70 EVYQEQTG   77 (77)
T ss_dssp             EEEECCCC
T ss_pred             EEEEecCC
Confidence            99999988

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=151.80  Aligned_cols=71  Identities=72%  Similarity=1.144  Sum_probs=69.7

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      +|+|+|++++|++++|+|++++||++||++||++           .|++++.++|+|||.+|.+++||++|+|||||+||
T Consensus         1 ~I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~-----------~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Id   69 (72)
T d1wm3a_           1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID   69 (72)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHH-----------HTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHH-----------hCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence            6999999999999999999999999999999999           99999999999999999999999999999999999


Q ss_pred             EE
Q psy4523          94 IY   95 (126)
Q Consensus        94 v~   95 (126)
                      |+
T Consensus        70 v~   71 (72)
T d1wm3a_          70 VF   71 (72)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.93  E-value=7.8e-26  Score=149.34  Aligned_cols=78  Identities=47%  Similarity=0.786  Sum_probs=75.3

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT   91 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~   91 (126)
                      .++|+|+|.+ +|.+++|+|+++++|++||++||++           .|++++.++|+|+|++|.+++||++++|+|||+
T Consensus         2 ~~~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~-----------~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~   69 (79)
T d1euvb_           2 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDI   69 (79)
T ss_dssp             CSEEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHH-----------TTCCGGGEEEEETTEECCTTCCTTTTTCCTTEE
T ss_pred             CcEEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHH-----------hCCChHhEEEEECCEEeCCCCCHHHCCCCCCCE
Confidence            5689999986 6899999999999999999999999           999999999999999999999999999999999


Q ss_pred             EEEEeeecCC
Q psy4523          92 IEIYQQQTGG  101 (126)
Q Consensus        92 Idv~~~Q~GG  101 (126)
                      |+|+++|.||
T Consensus        70 I~v~~~q~GG   79 (79)
T d1euvb_          70 IEAHREQIGG   79 (79)
T ss_dssp             EEEEECCBCC
T ss_pred             EEEEEeccCC
Confidence            9999999998

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=84.58  Aligned_cols=76  Identities=12%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.++++...|++..+++           .|++++..+|+|.|+.|.++.|.+++++++|++|.+
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~-----------~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L   69 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhh-----------cCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEE
Confidence            467788888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecCC
Q psy4523          95 YQQQTGG  101 (126)
Q Consensus        95 ~~~Q~GG  101 (126)
                      .++..||
T Consensus        70 ~~rlrgG   76 (76)
T d1ogwa_          70 VLRLRGG   76 (76)
T ss_dssp             EECTTCC
T ss_pred             EEecCCC
Confidence            9999988

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.2e-12  Score=83.38  Aligned_cols=82  Identities=17%  Similarity=0.252  Sum_probs=76.4

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ..+..+.|.|+..+|+.+.+.|.+++++..|+...+++           .|++++..||+|.|+.|.++.|..++++++|
T Consensus         3 ~~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~   71 (87)
T d1wh3a_           3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-----------QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDS   71 (87)
T ss_dssp             CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-----------TCCCTTTEEEEETTEECCSSSBHHHHTCCTT
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHH-----------HCcChHHeEEEeeceEcCCCCcHHHcCCCCC
Confidence            45678999999999999999999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCC
Q psy4523          90 DTIEIYQQQTGGF  102 (126)
Q Consensus        90 D~Idv~~~Q~GG~  102 (126)
                      ++|.+..++.||-
T Consensus        72 stl~l~~r~~~gp   84 (87)
T d1wh3a_          72 DTLILSKKKGSGP   84 (87)
T ss_dssp             EEEEEEECSCCCS
T ss_pred             CEEEEEecCCCCC
Confidence            9999999877763

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.4e-12  Score=82.55  Aligned_cols=77  Identities=8%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      .-|.|+|+..+|+.+.+.|.+++++..|+...+++           .|++++..||+|+|+.|.++.|.+++++++|++|
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~-----------~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti   70 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-----------EGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVV   70 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-----------TCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEE
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHH-----------hCCCcccEEEEECceEcCCCCcHHHcCCCCCCEE
Confidence            46889999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeecC
Q psy4523          93 EIYQQQTG  100 (126)
Q Consensus        93 dv~~~Q~G  100 (126)
                      ++.+.+..
T Consensus        71 ~lvi~~p~   78 (80)
T d1ttna1          71 QVIVSQPV   78 (80)
T ss_dssp             EEECCCSS
T ss_pred             EEEecCCC
Confidence            99988654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-11  Score=79.17  Aligned_cols=74  Identities=9%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|.|.|+..+|+.+.+.|.++++...|+...+++           .|++++..+|+|.|+.|.++.|.+++++++|++|
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~-----------~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti   70 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV   70 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHH-----------hcCChhHeEEEECCeECCCCCcHHHcCCCCCCEE
Confidence            46899999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEee
Q psy4523          93 EIYQQ   97 (126)
Q Consensus        93 dv~~~   97 (126)
                      .+.++
T Consensus        71 ~l~lR   75 (76)
T d1z2ma2          71 FMNLR   75 (76)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99875

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=8e-12  Score=85.38  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523           8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus         8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      +......|.|.|.+..|+.+.+.|.+++++..|++..+++           .|++++..+|+|.|+.|.++.|.++++++
T Consensus        22 ~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~dygI~   90 (100)
T d1uh6a_          22 SEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-----------TGTRWNKIVLKKWYTIFKDHVSLGDYEIH   90 (100)
T ss_dssp             CSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCSSCBHHHHTCC
T ss_pred             CCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHH-----------HCCCcceEEEEEEeecccCcCCHHHcCCC
Confidence            3455677999999999999999999999999999999999           99999999999999999999999999999


Q ss_pred             CCCEEEEEee
Q psy4523          88 EGDTIEIYQQ   97 (126)
Q Consensus        88 DGD~Idv~~~   97 (126)
                      ||++|+.+.+
T Consensus        91 ~GstI~L~~~  100 (100)
T d1uh6a_          91 DGMNLELYYQ  100 (100)
T ss_dssp             TTEEEEEECC
T ss_pred             CCCEEEEEEC
Confidence            9999998853

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=2.3e-11  Score=77.61  Aligned_cols=71  Identities=13%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~   95 (126)
                      .|.|++.+|+.+.+.|.++++...|+...+++           .|++++.+||.|.|+.|.++.|.+++++++|++|++.
T Consensus         2 ~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~-----------~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv   70 (73)
T d1bt0a_           2 LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEK-----------EGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV   70 (73)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------hCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence            57788888999999999999999999999999           9999999999999999999999999999999999998


Q ss_pred             ee
Q psy4523          96 QQ   97 (126)
Q Consensus        96 ~~   97 (126)
                      ++
T Consensus        71 lr   72 (73)
T d1bt0a_          71 LA   72 (73)
T ss_dssp             EC
T ss_pred             ee
Confidence            76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.4e-11  Score=78.87  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      +.|.|+..+|+.+.+.|.+++++..|++..+++           .|++++..+|+|.|+.|.++.|.+++++++|++|++
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~l   71 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKR-----------QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHI   71 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEE
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHH-----------HCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEE
Confidence            578888888999999999999999999999999           999999999999999999999999999999999999


Q ss_pred             EeeecC
Q psy4523          95 YQQQTG  100 (126)
Q Consensus        95 ~~~Q~G  100 (126)
                      ..+..|
T Consensus        72 v~R~rg   77 (78)
T d2zeqa1          72 VQRPRR   77 (78)
T ss_dssp             EESSCC
T ss_pred             EeccCC
Confidence            988766

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.9e-11  Score=79.84  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=69.9

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ......|+|+|+..++ ...|.|.+++++..|++..+++           .|++++.++|+|+|+.|.++.|.+++++++
T Consensus        27 ~~~~~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~-----------~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~   94 (103)
T d1j8ca_          27 PAEPKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKR-----------FKSQTDQLVLIFAGKILKDQDTLIQHGIHD   94 (103)
T ss_dssp             CCCCCCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHH-----------HCSCSSSEEEEETTEEESTTSCGGGTTCSS
T ss_pred             CCCCCeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHH-----------HCcCHHHeeeeeeeecccCCCcHHHcCCCC
Confidence            4455679999998654 5689999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEee
Q psy4523          89 GDTIEIYQQ   97 (126)
Q Consensus        89 GD~Idv~~~   97 (126)
                      |++|++.++
T Consensus        95 g~~I~lvlr  103 (103)
T d1j8ca_          95 GLTVHLVIK  103 (103)
T ss_dssp             SEEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999998864

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2e-11  Score=78.29  Aligned_cols=71  Identities=11%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|++..|+.+.+.|.++++...|++..+++           .|++++.+++.|+|+.|.++.|.+++++++|++|+.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~-----------~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L   70 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQ-----------IGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLEL   70 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHH-----------HCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHh-----------hcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEE
Confidence            678898888999999999999999999999999           999999999999999999999999999999999998


Q ss_pred             Ee
Q psy4523          95 YQ   96 (126)
Q Consensus        95 ~~   96 (126)
                      +.
T Consensus        71 ~~   72 (73)
T d1m94a_          71 YY   72 (73)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-10  Score=75.59  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=66.3

Q ss_pred             EEEEEEeccCC-EEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          15 INLKVLGQDNN-VVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        15 I~Ikv~~~~g~-~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      +.|.|++.+|+ ...+ .+.+++++..|+...+++           .|++++.+||.|+|+.|.++.|.+++++++|++|
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti   69 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-----------FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTI   69 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEE
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHH-----------HCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEE
Confidence            35778888886 4555 599999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeee
Q psy4523          93 EIYQQQ   98 (126)
Q Consensus        93 dv~~~Q   98 (126)
                      ++.+++
T Consensus        70 ~lv~r~   75 (76)
T d2faza1          70 QLLVRQ   75 (76)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            998875

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.3e-11  Score=78.41  Aligned_cols=68  Identities=13%  Similarity=0.310  Sum_probs=64.6

Q ss_pred             ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q psy4523          22 QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG  100 (126)
Q Consensus        22 ~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~G  100 (126)
                      -+|+.+.+.|.++++++.|+...+++           .|++++..+++|.|+.|.++.|.+++++++|++|++.+++.|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~-----------~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEA-----------TGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHH-----------TCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhh-----------hcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            35778899999999999999999999           999999999999999999999999999999999999999876

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.4e-11  Score=77.64  Aligned_cols=72  Identities=4%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc---CccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN---LSMSTVRFRFDGQAINEQDTPSTLEMEEGD   90 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g---l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD   90 (126)
                      .|+|.|+..+|+.+.+.|.++++...|++..++.           .|   ++++.+||+|+|+.|.++.|.+++++.+|+
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~-----------~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s   70 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE-----------KGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKN   70 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHH-----------TCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTS
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHh-----------cCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCC
Confidence            4678888888999999999999999999999998           77   778999999999999999999999999999


Q ss_pred             EEEEEe
Q psy4523          91 TIEIYQ   96 (126)
Q Consensus        91 ~Idv~~   96 (126)
                      +|.+++
T Consensus        71 ~i~~~v   76 (77)
T d1oqya4          71 FVVVMV   76 (77)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            998876

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.6e-11  Score=79.39  Aligned_cols=76  Identities=14%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      +++..|.|.|+..+ ....|.|.+++++..|++..+++           .|++++.++|+|.|+.|.++.|.+++++++|
T Consensus         6 ~~~~~i~v~Vk~~~-~~~~i~v~~~~tV~~lK~~I~~~-----------~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~g   73 (83)
T d1wx8a1           6 PSSRIIRVSVKTPQ-DCHEFFLAENSNVRRFKKQISKY-----------LHCNADRLVLIFTGKILRDQDILSQRGILDG   73 (83)
T ss_dssp             CCSCEEEEEEECSS-SEEEEEEETTCCHHHHHHHHHHH-----------TCSCTTTBCCEETTEECCTTSCHHHHTCCTT
T ss_pred             CCCCeEEEEEEcCC-CcEEEEECCCChHHHHHHHHHHH-----------hCCChhHEEEEEEhhccccCCcHHHcCCCCC
Confidence            35667999999864 55689999999999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEee
Q psy4523          90 DTIEIYQQ   97 (126)
Q Consensus        90 D~Idv~~~   97 (126)
                      ++|.++++
T Consensus        74 s~I~lv~r   81 (83)
T d1wx8a1          74 STVHVVVR   81 (83)
T ss_dssp             EEEECCBC
T ss_pred             CEEEEEEe
Confidence            99998765

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-10  Score=74.36  Aligned_cols=72  Identities=14%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCCCCCccccCCCCCCEEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|+|+..+|..+.+.|.+++++..|+...+++           .|++++..|++|  .|+.|.++.|.+++++++|++|.
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~-----------~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~   70 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQK-----------IGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVL   70 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHH-----------HCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------hccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEE
Confidence            46777788999999999999999999999999           999999999999  59999999999999999999999


Q ss_pred             EEeee
Q psy4523          94 IYQQQ   98 (126)
Q Consensus        94 v~~~Q   98 (126)
                      +++++
T Consensus        71 lv~~~   75 (76)
T d1z2ma1          71 LVVDK   75 (76)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            99876

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=2.1e-10  Score=73.18  Aligned_cols=73  Identities=10%  Similarity=0.351  Sum_probs=66.5

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|+|+|++. +....+.|.++++...|++...++           .|++++..+++|.|+.|.++.|..++++++|++|.
T Consensus         1 si~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~   68 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWEVNVAPESTVLQFKEAINKA-----------NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH   68 (73)
T ss_dssp             EEEEEEEET-TEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred             CEEEEEEeC-CeEEEEEECCCChHHHHHHHHHHH-----------HCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEE
Confidence            378888874 456789999999999999999999           99999999999999999999999999999999999


Q ss_pred             EEeee
Q psy4523          94 IYQQQ   98 (126)
Q Consensus        94 v~~~Q   98 (126)
                      +..+|
T Consensus        69 lV~~~   73 (73)
T d2bwfa1          69 LVKSQ   73 (73)
T ss_dssp             EEECC
T ss_pred             EEeeC
Confidence            88654

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-10  Score=74.84  Aligned_cols=75  Identities=13%  Similarity=0.282  Sum_probs=69.2

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      ..|+|.|+.. |....+.|.++.++..|++..+++           .|++++.++++|.|+.|.++.|.+++++++|++|
T Consensus         6 ~~i~I~Vkt~-~~~~~~~V~~~~tV~~lK~~i~~~-----------~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti   73 (84)
T d1yqba1           6 HLIKVTVKTP-KDKEDFSVTDTCTIQQLKEEISQR-----------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTV   73 (84)
T ss_dssp             TEEEEEEECS-SCEEEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEE
T ss_pred             CEEEEEEEcC-CCcEEEEECCCCcHHHHHHHHHHH-----------HCcCchhEEEEEeeeeccccCcHHHcCCCCCCEE
Confidence            4699999986 445789999999999999999999           9999999999999999999999999999999999


Q ss_pred             EEEeeec
Q psy4523          93 EIYQQQT   99 (126)
Q Consensus        93 dv~~~Q~   99 (126)
                      .+.+++.
T Consensus        74 ~lv~r~~   80 (84)
T d1yqba1          74 HLVIKRQ   80 (84)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9988754

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=3.4e-10  Score=79.01  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhh-hhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCV-SILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~-~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      ...+.|+|+|+..+|....|.|.+++++..|++.+...|- .|    ....|++++.+|++|.|+.|.++.|.+++++.+
T Consensus        12 ~~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~----~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~   87 (116)
T d1wgha_          12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDW----EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPF   87 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCS----SCCCCCCTTTEEEEETTEEECSSCBTTTTTCCS
T ss_pred             CCCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhccccc----ccccCCChHHeEEEECCEEecCCCCHHHcCCCC
Confidence            3557899999999999999999999999999999954320 00    011788999999999999999999999999999


Q ss_pred             CCEEEEEeeecC
Q psy4523          89 GDTIEIYQQQTG  100 (126)
Q Consensus        89 GD~Idv~~~Q~G  100 (126)
                      |+++.+++....
T Consensus        88 g~~~~lhlv~r~   99 (116)
T d1wgha_          88 GKTTVMHLVARE   99 (116)
T ss_dssp             SCEEEEEEEECS
T ss_pred             CCEEEEEEEeCC
Confidence            998777655443

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.9e-10  Score=74.51  Aligned_cols=75  Identities=7%  Similarity=0.233  Sum_probs=67.3

Q ss_pred             EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc---CccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523          16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN---LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI   92 (126)
Q Consensus        16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g---l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I   92 (126)
                      .|.|+..+|+.+.+.|.+++++..|++..+++           .|   ++++.+||+|.|+.|.++.|.+++++++|++|
T Consensus         2 ~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~-----------~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i   70 (95)
T d1uela_           2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESE-----------KGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV   70 (95)
T ss_dssp             EEEEEETTCCEEEEECCTTSBHHHHHHHHHHH-----------HCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEE
T ss_pred             EEEEEeCCCCEEEEEECCCccHHHHHHHHHhh-----------hcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEE
Confidence            56677788999999999999999999999988           54   67889999999999999999999999999999


Q ss_pred             EEEeeecCC
Q psy4523          93 EIYQQQTGG  101 (126)
Q Consensus        93 dv~~~Q~GG  101 (126)
                      .+++.+...
T Consensus        71 ~lv~~~~~~   79 (95)
T d1uela_          71 VVMVTKPKA   79 (95)
T ss_dssp             EEEESSCCC
T ss_pred             EEEECCCCC
Confidence            999875543

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=2.5e-10  Score=78.99  Aligned_cols=78  Identities=6%  Similarity=0.187  Sum_probs=70.5

Q ss_pred             cEEEEEEe---ccCCEEEEEecC-CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          14 HINLKVLG---QDNNVVQFKIKK-GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        14 ~I~Ikv~~---~~g~~v~fkIk~-tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      .++|+|+-   .+|+.+.+.|.+ ++++..|+...+++           .|++++.++++|.|+.|.++.|.+++++++|
T Consensus        27 ~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~g   95 (111)
T d1we6a_          27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-----------IQIPANKQKLSGKAGFLKDNMSLAHYNVGAG   95 (111)
T ss_dssp             CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-----------TTCCTTTSEEECSSSBCCTTSBTTTTTCSSS
T ss_pred             CEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHH-----------HCCCccceEEEEeeEEccccCCHHHcCCCCC
Confidence            35566653   348889999987 89999999999999           9999999999999999999999999999999


Q ss_pred             CEEEEEeeecCCC
Q psy4523          90 DTIEIYQQQTGGF  102 (126)
Q Consensus        90 D~Idv~~~Q~GG~  102 (126)
                      ++|++.++..||-
T Consensus        96 sti~L~lr~rGG~  108 (111)
T d1we6a_          96 EILTLSLRERSGP  108 (111)
T ss_dssp             CEEEEECSSCCSS
T ss_pred             CEEEEEeeCCCCC
Confidence            9999999999984

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=9.5e-10  Score=70.96  Aligned_cols=71  Identities=11%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             EEEEEeccCC-EEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523          16 NLKVLGQDNN-VVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE   93 (126)
Q Consensus        16 ~Ikv~~~~g~-~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id   93 (126)
                      .|.|+..+|+ ...+ .|.+++++..|+...+++           .|++.+.+||+|.|+.|.++.|.+++++++|++|.
T Consensus         2 ~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~   70 (76)
T d1wy8a1           2 WIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-----------FDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQ   70 (76)
T ss_dssp             EEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-----------SCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEE
T ss_pred             EEEEEeCCCCceEEEeccCCCChHHHHHHHHHHH-----------HCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEE
Confidence            5677777884 4555 699999999999999999           99999999999999999999999999999999999


Q ss_pred             EEee
Q psy4523          94 IYQQ   97 (126)
Q Consensus        94 v~~~   97 (126)
                      +.++
T Consensus        71 lv~r   74 (76)
T d1wy8a1          71 LLVR   74 (76)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=2.9e-09  Score=71.59  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC-CCCCccccCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN-EQDTPSTLEME   87 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~-~~~TP~dL~Me   87 (126)
                      .+.+..|+|+|+..+|.+..+.|.+++++..|+...              ...+++.+||+|+|+.|. +..|..+++++
T Consensus         2 ~~~~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i--------------~~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~   67 (95)
T d1wiaa_           2 SSGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKY--------------FPGQESQMKLIYQGRLLQDPARTLSSLNIT   67 (95)
T ss_dssp             CCCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHH--------------SSSTTTTCEEEETTEECCCSSCBTTTTTCC
T ss_pred             CCCCCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHH--------------hcCCcceeEEEECCEEcccCCCCHHHcCCC
Confidence            356778999999999999999999999999999643              345678899999999997 56899999999


Q ss_pred             CCCEEEEEeeecCCCcCC
Q psy4523          88 EGDTIEIYQQQTGGFKQT  105 (126)
Q Consensus        88 DGD~Idv~~~Q~GG~~~~  105 (126)
                      ||++|.+++.+-++....
T Consensus        68 ~g~~v~l~~~~~~~~~~~   85 (95)
T d1wiaa_          68 NNCVIHCHRSPPGAAVSG   85 (95)
T ss_dssp             TTEEEEEECCCCCCCCCC
T ss_pred             CCCEEEEEEcCCCCCCCC
Confidence            999999999887776544

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.9e-10  Score=72.61  Aligned_cols=71  Identities=10%  Similarity=0.276  Sum_probs=65.6

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI   94 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv   94 (126)
                      |.|.|++.+|..+.+.|.++++...|+...+++           .|++++..||+|.|+.|.++.|.+++++ +|++|++
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~l   68 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-----------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHL   68 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBC
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEE
Confidence            578888888999999999999999999999999           9999999999999999999999999999 5788876


Q ss_pred             Eee
Q psy4523          95 YQQ   97 (126)
Q Consensus        95 ~~~   97 (126)
                      ..+
T Consensus        69 v~r   71 (73)
T d1wx9a1          69 VER   71 (73)
T ss_dssp             CCS
T ss_pred             Eec
Confidence            654

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.8e-10  Score=75.01  Aligned_cols=83  Identities=7%  Similarity=0.015  Sum_probs=70.9

Q ss_pred             CCCcEEEEEE--eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523          11 TDEHINLKVL--GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        11 ~~~~I~Ikv~--~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      +..+|.|.+.  ...++.+.+.|+.+++.+.|++..+++           .|++++.++++|.|+.|.++.|.+++++++
T Consensus        14 g~ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~-----------~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~   82 (100)
T d1wjua_          14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-----------FGLQENYIKIVINKKQLQLGKTLEEQGVAH   82 (100)
T ss_dssp             CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-----------TTCCSTTCEEEETTEECCTTSBHHHHTCCS
T ss_pred             ceEEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHH-----------HCCCCeeEEEEEcccCcCCCcCHHHcCCCC
Confidence            3346666663  344788999999999999999999999           999999999999999999999999999999


Q ss_pred             CCEEEEEeeecCCCcC
Q psy4523          89 GDTIEIYQQQTGGFKQ  104 (126)
Q Consensus        89 GD~Idv~~~Q~GG~~~  104 (126)
                      |++|.|+..+...++.
T Consensus        83 ~s~i~vi~~~~~~~p~   98 (100)
T d1wjua_          83 NVKAMVLELKQSSGPS   98 (100)
T ss_dssp             SEEEEEECCCCCCCSC
T ss_pred             CCEEEEEEcCCCCCCC
Confidence            9999888766555443

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.5e-09  Score=73.77  Aligned_cols=81  Identities=9%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             CCCcEEEEE----EeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC-CCCCccccC
Q psy4523          11 TDEHINLKV----LGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN-EQDTPSTLE   85 (126)
Q Consensus        11 ~~~~I~Ikv----~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~-~~~TP~dL~   85 (126)
                      ...-+.|.|    ++.++..+.+.|.+++++..|+.....+           .|++++.++|+|+|+.|. ++.|.++++
T Consensus         4 ~~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~-----------~gip~~~Q~Li~~Gk~L~dd~~tL~~~g   72 (102)
T d1v5oa_           4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----------SGVPAEEAQIVYMEQLLTDDHCSLGSYG   72 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----------TCCCGGGBCEEETTEEECCSSSBHHHHT
T ss_pred             CcCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHH-----------hCCCcceEEEEeCCeEeecccCCHHHcC
Confidence            344455555    4445778889999999999999999999           999999999999999996 567999999


Q ss_pred             CCCCCEEEEEeeecCCC
Q psy4523          86 MEEGDTIEIYQQQTGGF  102 (126)
Q Consensus        86 MeDGD~Idv~~~Q~GG~  102 (126)
                      ++|||+|.+..+..++.
T Consensus        73 I~~g~~i~l~~r~~~~~   89 (102)
T d1v5oa_          73 LKDGDMVVLLQKDNVGL   89 (102)
T ss_dssp             CCTTEEEEECBCCCCCC
T ss_pred             CCCCCEEEEEECCCCCC
Confidence            99999998887755543

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=4.9e-09  Score=71.66  Aligned_cols=83  Identities=12%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             CCCcEEEEEEeccCCEEE-EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQ-FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLEME   87 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~-fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~Me   87 (126)
                      ..+.|.|+++..+|..++ |.|.++++...|++...++|-      ..+.|++  ++.+||+|.|+.|.++.|.+++++.
T Consensus         4 ~~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~------~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~   77 (101)
T d1se9a_           4 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWP------REKENGPKTVKEVKLISAGKVLENSKTVKDYRSP   77 (101)
T ss_dssp             SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSC------TTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCC
T ss_pred             ccceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhcc------ccccCCCCCcccEEEEECCeEecCCCCHHHcCCC
Confidence            356899999999999884 999999999999999988731      1125665  7799999999999999999999999


Q ss_pred             CCC------EEEEEeeec
Q psy4523          88 EGD------TIEIYQQQT   99 (126)
Q Consensus        88 DGD------~Idv~~~Q~   99 (126)
                      +|+      ++++.++..
T Consensus        78 ~g~~~~~~~tmHlVvrpp   95 (101)
T d1se9a_          78 VSNLAGAVTTMHVIIQAP   95 (101)
T ss_dssp             TTSCTTCCEEEEEEECCC
T ss_pred             CCCcCCCceEEEEEeCCC
Confidence            999      888888753

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=1.7e-09  Score=72.50  Aligned_cols=76  Identities=11%  Similarity=0.154  Sum_probs=68.2

Q ss_pred             CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523           9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus         9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      .+.+..|+|+|+...+....+.|.+++++..|++..++.           .|++++..+|+|.|+.|.+ +|..+++++|
T Consensus         2 ~s~s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~-----------~gvp~~~QkLi~~Gk~L~d-~tL~~~gi~~   69 (96)
T d1wgga_           2 SSGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFAL-----------TGVQPARQKVMVKGGTLKD-DDWGNIKMKN   69 (96)
T ss_dssp             CSCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHH-----------TCCCTTTSCCEETTEECCS-SCCCSCCCCS
T ss_pred             CCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhh-----------cCccceeeEEeecCcccCC-CcHHHCCCCC
Confidence            456778999999876665679999999999999999999           9999999999999999986 5999999999


Q ss_pred             CCEEEEEe
Q psy4523          89 GDTIEIYQ   96 (126)
Q Consensus        89 GD~Idv~~   96 (126)
                      |++|.++.
T Consensus        70 g~~i~lv~   77 (96)
T d1wgga_          70 GMTVLMMG   77 (96)
T ss_dssp             SCEEECCC
T ss_pred             CCEEEEEe
Confidence            99998873

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.3e-09  Score=74.28  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=68.8

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc---------------eeEEEECCee
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS---------------TVRFRFDGQA   74 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~---------------~~rF~fdG~r   74 (126)
                      +.+.-|+|+|+..+|..+.+.|.++.++..|+...+++           .|++++               .+.++|+|+.
T Consensus         3 sgss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~-----------~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~   71 (105)
T d1v2ya_           3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY-----------VQLKQEREGGVQHISWSYVWRTYHLTSAGEK   71 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HHHHHHHTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHH-----------HCcCHHHhcccccccccccccceEEEECCEE
Confidence            56778999999999999999999999999999999999           555544               4569999999


Q ss_pred             cCCC-CCccccCCCCCCEEEEEeeec
Q psy4523          75 INEQ-DTPSTLEMEEGDTIEIYQQQT   99 (126)
Q Consensus        75 L~~~-~TP~dL~MeDGD~Idv~~~Q~   99 (126)
                      |.++ .|..+++++|||+|.+..++.
T Consensus        72 L~d~~~tL~~~gI~~g~~l~lv~r~~   97 (105)
T d1v2ya_          72 LTEDRKKLRDYGIRNRDEVSFIKKLG   97 (105)
T ss_dssp             ECCSSSBHHHHTCCSSEEEEEEECSC
T ss_pred             CcccCCCHHHcCCCCCCEEEEEEecC
Confidence            9766 599999999999999987754

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=6.4e-09  Score=69.47  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=70.2

Q ss_pred             CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523          10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG   89 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG   89 (126)
                      ...+.|+|+|.. +++.+.+.|.+++++..|++..++.           .|++++.++++|.|+ +.++.|..++++.+|
T Consensus        13 ~~~~~i~v~V~~-~~k~~~i~v~~~~TV~~LK~~I~~~-----------tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~g   79 (95)
T d1v86a_          13 VGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-----------TGLPPAMQKVMYKGL-VPEDKTLREIKVTSG   79 (95)
T ss_dssp             CCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-----------HCSCSTTCCCBSSSB-CCSSSBHHHHCCCTT
T ss_pred             CCccEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------hCCChhHEEEEeccc-ccCCCcHHHCCCCCC
Confidence            345689999985 5777889999999999999999999           999999999999996 899999999999999


Q ss_pred             CEEEEEeeecCC
Q psy4523          90 DTIEIYQQQTGG  101 (126)
Q Consensus        90 D~Idv~~~Q~GG  101 (126)
                      ++|.++....+|
T Consensus        80 s~i~lvgs~~~g   91 (95)
T d1v86a_          80 AKIMVVGSTISG   91 (95)
T ss_dssp             EEEEECCSSCCC
T ss_pred             CEEEEEecCCCC
Confidence            999998665444

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.1e-08  Score=66.25  Aligned_cols=75  Identities=11%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             CCCCcEEEEEEecc---CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee-------cC-CC
Q psy4523          10 STDEHINLKVLGQD---NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA-------IN-EQ   78 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~---g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r-------L~-~~   78 (126)
                      ..+..|+|+|.+.+   +..++.+|.++.++..|+....+.           .|++.+..++.|.|++       |. ++
T Consensus         5 ss~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~-----------~gip~~~qrL~y~~~~~~~~~~~l~~d~   73 (97)
T d1wjna_           5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRL-----------LKVPVSELLLSYESSKMPGREIELENDL   73 (97)
T ss_dssp             SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTT-----------TTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred             cCCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHH-----------HCcChHHeEEEecCCCCCcccceecCCC
Confidence            34577899988754   566789999999999999999999           9999999999998874       33 67


Q ss_pred             CCccccCCCCCCEEEEE
Q psy4523          79 DTPSTLEMEEGDTIEIY   95 (126)
Q Consensus        79 ~TP~dL~MeDGD~Idv~   95 (126)
                      .|..+++++|||+|.|.
T Consensus        74 ~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          74 QPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             SBSGGGTCCTTCEEEEE
T ss_pred             cCHhhccCCCCCEEEEE
Confidence            99999999999999985

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.5e-08  Score=65.13  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC----
Q psy4523          15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD----   90 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD----   90 (126)
                      |.|+++. .+..+++.|.+++++..|+...+++           .|++++..||+|.|+.|.++.|..++++.+++    
T Consensus         2 ifv~i~~-~k~Ti~l~v~~~~TV~~lK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~   69 (103)
T d2c9wb1           2 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGI-----------LKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ   69 (103)
T ss_dssp             EEEEEEE-BTEEEEEEECTTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTT
T ss_pred             EEEEEeC-CCEEEEEEeCCCCcHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCCccccccc
Confidence            5667765 2445789999999999999999999           99999999999999999999999999997664    


Q ss_pred             ---EEEEEeeecCCCcCCCceeeeccCCCCCCccccc
Q psy4523          91 ---TIEIYQQQTGGFKQTPQLQIWHTESNMLDPSLQS  124 (126)
Q Consensus        91 ---~Idv~~~Q~GG~~~~~~~~~~~~~~~~~~~~~~~  124 (126)
                         .+...+...|+....    -.++-|+  ||.+|.
T Consensus        70 ~~~~~~l~~~~~~~~~~~----~~~p~~~--p~~~p~  100 (103)
T d2c9wb1          70 APATVGLAFRADDTFEAL----CIEPFSS--PPELPD  100 (103)
T ss_dssp             BCEEEEEEEEETTEECCC----CBCCCCC--CCCCCG
T ss_pred             CCcEEEEEEecCCCcccc----ccccCCC--CCCchh
Confidence               555556655543322    2344444  666663

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.7e-08  Score=62.06  Aligned_cols=72  Identities=14%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             EEEEEEeccCCEEEEEe-----cCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC-CCCCccccCCCC
Q psy4523          15 INLKVLGQDNNVVQFKI-----KKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN-EQDTPSTLEMEE   88 (126)
Q Consensus        15 I~Ikv~~~~g~~v~fkI-----k~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~-~~~TP~dL~MeD   88 (126)
                      |+|.|... +....+.|     ..++++..|++..++.           .|++++..+++|+|+.|. ++.|.+++++++
T Consensus         2 i~i~V~~~-~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~-----------tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~   69 (81)
T d1wxva1           2 LTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-----------IGVPQSFQKLIFKGKSLKEMETPLSALGIQD   69 (81)
T ss_dssp             EEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-----------TCCCTTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred             EEEEEEEC-CeeEEEEEecCCCCCccHHHHHHHHHHHH-----------HCcCHHHEEeeecCeEeCcCCCChHHCCCCC
Confidence            67787653 55556666     4688999999999999           999999999999999996 568999999999


Q ss_pred             CCEEEEEeee
Q psy4523          89 GDTIEIYQQQ   98 (126)
Q Consensus        89 GD~Idv~~~Q   98 (126)
                      |++|.++.+.
T Consensus        70 g~~i~lv~~~   79 (81)
T d1wxva1          70 GCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEESCC
T ss_pred             CCEEEEEEec
Confidence            9999987653

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-07  Score=62.27  Aligned_cols=80  Identities=11%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             CCCCcEEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc--CccceeEEEECCeecCCCCCccccC
Q psy4523          10 STDEHINLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN--LSMSTVRFRFDGQAINEQDTPSTLE   85 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~~rF~fdG~rL~~~~TP~dL~   85 (126)
                      +.+..|+|.|++.++  ..+.+.+.+++++..|++..++.           .|  ++++.+|++|.|+.|.++.|..++.
T Consensus         3 sgs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~-----------~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~   71 (93)
T d1wgda_           3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV-----------YPERPRPEDQRLIYSGKLLLDHQCLRDLL   71 (93)
T ss_dssp             CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHH-----------STTCCCTTTCEEEETTEECCSSSCHHHHS
T ss_pred             CCCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHH-----------cCCCCChHHEEEEECCeEccCCCCHHHhC
Confidence            455668888887665  45789999999999999999998           55  6789999999999999999999985


Q ss_pred             C--CCCCEEEEEeeecC
Q psy4523          86 M--EEGDTIEIYQQQTG  100 (126)
Q Consensus        86 M--eDGD~Idv~~~Q~G  100 (126)
                      .  +++.+|++......
T Consensus        72 ~~~~~~~viHLV~~~~~   88 (93)
T d1wgda_          72 PKQEKRHVLHLVCNVKS   88 (93)
T ss_dssp             CSSSCSEEEEEECCCCC
T ss_pred             cccCCCCEEEEEecCCC
Confidence            4  45558888776543

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=6.3e-08  Score=63.56  Aligned_cols=76  Identities=8%  Similarity=0.078  Sum_probs=66.0

Q ss_pred             CCCCcEEEEEEeccCCEEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecCCCCCccccC
Q psy4523          10 STDEHINLKVLGQDNNVVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAINEQDTPSTLE   85 (126)
Q Consensus        10 ~~~~~I~Ikv~~~~g~~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~~~~TP~dL~   85 (126)
                      +.+..|.|.|+. .|....+ .|.+++++..|++..+++           .|++++..+++   |.|+.+.++.|..+++
T Consensus         3 s~s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~-----------t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~   70 (90)
T d1v5ta_           3 SGSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-----------TGVLPERQKLLGLKVKGKPAENDVKLGALK   70 (90)
T ss_dssp             CCCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-----------TCCCTTTCEEESCEETTEECCTTSBHHHHT
T ss_pred             CCCCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHH-----------HcCCHHHhhhhhhccCCcCCCCcCcHHHcC
Confidence            455667777775 4566666 599999999999999999           99999999999   6999999999999999


Q ss_pred             CCCCCEEEEEee
Q psy4523          86 MEEGDTIEIYQQ   97 (126)
Q Consensus        86 MeDGD~Idv~~~   97 (126)
                      +++|++|.+...
T Consensus        71 i~~g~~i~lv~s   82 (90)
T d1v5ta_          71 LKPNTKIMMMGT   82 (90)
T ss_dssp             CCTTEEEEEECC
T ss_pred             CCCCCEEEEEee
Confidence            999999998755

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.46  E-value=8.5e-07  Score=58.31  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CcEEEEEEecc-CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe-------ecCCCCCcccc
Q psy4523          13 EHINLKVLGQD-NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ-------AINEQDTPSTL   84 (126)
Q Consensus        13 ~~I~Ikv~~~~-g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~-------rL~~~~TP~dL   84 (126)
                      +.|.|+|.+.- +..+..++.++.++..|+......           .|++++..++.|.|.       ...++.|..++
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~-----------~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~y   71 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----------VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL   71 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----------HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHH-----------HCCChhheEEEEeCCCCCcccccccCCCCHHHC
Confidence            35678887632 455789999999999999999999           999999999999775       45678999999


Q ss_pred             CCCCCCEEEEEeeecCCC
Q psy4523          85 EMEEGDTIEIYQQQTGGF  102 (126)
Q Consensus        85 ~MeDGD~Idv~~~Q~GG~  102 (126)
                      +++||.+|+| ++..||+
T Consensus        72 gi~dG~~Ihv-vd~~~~~   88 (90)
T d1t0ya_          72 GVRDGYRIHA-VDVTGGN   88 (90)
T ss_dssp             TCCSSEEEEE-EECTTCC
T ss_pred             CCCCCCEEEE-EeCCCCC
Confidence            9999999999 5667775

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=6e-07  Score=59.75  Aligned_cols=78  Identities=8%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe-------ecCCCCCc
Q psy4523          10 STDEHINLKVLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ-------AINEQDTP   81 (126)
Q Consensus        10 ~~~~~I~Ikv~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~-------rL~~~~TP   81 (126)
                      +.+..|.|.|.+. ++...+.++.++.++..|+......           .|++++..++.|.|+       .+.++.|.
T Consensus         3 sgss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~-----------tGip~~~qrL~~~~~~~~~~~~l~~d~~~L   71 (95)
T d1v6ea_           3 SGSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----------VGSPASCMELELYGADDKFYSKLDQEDALL   71 (95)
T ss_dssp             SCCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----------TCSCTTTCBCEEECSSSCEEEECCCSSSBT
T ss_pred             CCCCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHH-----------hCcCchhEEEEEeCCCCceeecccCCcCCH
Confidence            4667888998874 4555789999999999999999999           999999999999886       47788999


Q ss_pred             cccCCCCCCEEEEEeee
Q psy4523          82 STLEMEEGDTIEIYQQQ   98 (126)
Q Consensus        82 ~dL~MeDGD~Idv~~~Q   98 (126)
                      .+++++||++|++....
T Consensus        72 ~~y~i~dg~~ihlvd~~   88 (95)
T d1v6ea_          72 GSYPVDDGCRIHVIDHS   88 (95)
T ss_dssp             TSSSCCTTCEEEEBCCS
T ss_pred             HHCCCCCCCEEEEEeCC
Confidence            99999999999998664

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=6.7e-06  Score=54.99  Aligned_cols=55  Identities=11%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             CCcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523          34 GTPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~   97 (126)
                      +.+...|++..++++.         .+. +++.+||+|.|+.|.++.|.+++++++|++|++..+
T Consensus        37 ~~tV~~lK~~i~~~~~---------~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          37 GYSISFLKQLIAGKLQ---------ESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCBHHHHHHHHHHHCT---------TTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             ccCHHHHHHHHHHHcc---------cCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            5679999999998831         233 368899999999999999999999999999998865

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.00026  Score=45.47  Aligned_cols=69  Identities=16%  Similarity=0.283  Sum_probs=64.4

Q ss_pred             EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      |.|.+.+|+...+++.+++.|..+.+.-|++           .|++++...+.|.++.|+.+..---.+|-+|..+|...
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k-----------~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRR-----------QDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHH-----------TTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHH-----------hCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            6788899999999999999999999999999           99999999999999999999999999999999888764

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.0031  Score=40.54  Aligned_cols=78  Identities=10%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             cCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC--CCCCc
Q psy4523           6 KESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN--EQDTP   81 (126)
Q Consensus         6 ~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~--~~~TP   81 (126)
                      +|+.+..+.++|.|+-.+|..+.-+...+++++.|++.. +.           .+.....++|+..  .+.+.  .+.|.
T Consensus         8 EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv-~~-----------~~~~~~~f~l~~~~Pr~~~~~d~~~TL   75 (96)
T d2cr5a1           8 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWM-MK-----------VGYHKSLYRLSTSFPRRALEVEGGSSL   75 (96)
T ss_dssp             CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHH-HH-----------HTCCTTTEEEECSSSCCBCCCCSSCBH
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHH-HH-----------hccCcccceeecCCCceecCccCCCcH
Confidence            344556678999999999999999999999999999754 44           3344555666554  34443  36789


Q ss_pred             cccCCCCCCEEEEE
Q psy4523          82 STLEMEEGDTIEIY   95 (126)
Q Consensus        82 ~dL~MeDGD~Idv~   95 (126)
                      .++|+-...++.|.
T Consensus        76 ~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          76 EDIGITVDTVLNVE   89 (96)
T ss_dssp             HHHTCSSCEEEEEE
T ss_pred             HHCCCCCCCEEEEe
Confidence            99999988877664

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.075  Score=33.51  Aligned_cols=67  Identities=7%  Similarity=0.114  Sum_probs=51.5

Q ss_pred             CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec-CCCCCccccCCCCC
Q psy4523          13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI-NEQDTPSTLEMEEG   89 (126)
Q Consensus        13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL-~~~~TP~dL~MeDG   89 (126)
                      +..+|+|+-.||..+..++..+++++.|++......          .+.....+.|.-.  -+.+ +.++|.+++|+.+.
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~----------~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR----------PAMAATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHC----------TTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhC----------ccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            467888888999999999999999999998776540          3455566777765  3345 45799999999865

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.096  Score=32.32  Aligned_cols=73  Identities=4%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecC---CCCCccccCC
Q psy4523          12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAIN---EQDTPSTLEM   86 (126)
Q Consensus        12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~---~~~TP~dL~M   86 (126)
                      .+.++|+|+-.+|..+.-+..++++++.|++.....            +.+...+.|.-  -.+.+.   .+.|.+++|+
T Consensus         3 e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~------------~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL   70 (82)
T d1h8ca_           3 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK------------GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKL   70 (82)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH------------TCCSSSEEEEETTTTEETTTCCTTSBHHHHCC
T ss_pred             CCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc------------CCCCCceEEEecCcccccccccccCCHHHCCC
Confidence            346778888899999999999999999999876544            34455666654  455664   4579999999


Q ss_pred             CCCCEEEEEe
Q psy4523          87 EEGDTIEIYQ   96 (126)
Q Consensus        87 eDGD~Idv~~   96 (126)
                      -...++.|-.
T Consensus        71 ~p~~~L~vq~   80 (82)
T d1h8ca_          71 FPQETLFLEA   80 (82)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9888776543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.13  Score=34.29  Aligned_cols=77  Identities=12%  Similarity=0.136  Sum_probs=55.2

Q ss_pred             CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec---CCCCCccccC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI---NEQDTPSTLE   85 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL---~~~~TP~dL~   85 (126)
                      ..+..+|.|+-.||..+.-++..+++++.|++.....            +.....+.|...  -+.|   +.+.|.++++
T Consensus        40 ~~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~------------~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~g  107 (124)
T d1wj4a_          40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK------------GYPNERFELLTNFPRRKLSHLDYDITLQEAG  107 (124)
T ss_dssp             SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH------------HCCTTTEEEECSSSCCEETSSCSSSCTTTTT
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc------------ccCCcceEEeecccccccccccccCcHHHcC
Confidence            3446788888899999999999999999998766443            344556666543  3444   3468999999


Q ss_pred             CCCCCEEEEEeeecCC
Q psy4523          86 MEEGDTIEIYQQQTGG  101 (126)
Q Consensus        86 MeDGD~Idv~~~Q~GG  101 (126)
                      +-...+|  ++++.|+
T Consensus       108 L~P~~~L--~vee~~~  121 (124)
T d1wj4a_         108 LCPQETV--FVQESGP  121 (124)
T ss_dssp             CCSSBCC--EEEECCS
T ss_pred             CCCCCEE--EEEecCC
Confidence            9888876  4455554

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.38  E-value=0.046  Score=35.89  Aligned_cols=69  Identities=10%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             EEEEeccCCEEEEEe-cCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--------------CeecCC-CCC
Q psy4523          17 LKVLGQDNNVVQFKI-KKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--------------GQAINE-QDT   80 (126)
Q Consensus        17 Ikv~~~~g~~v~fkI-k~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--------------G~rL~~-~~T   80 (126)
                      |+|++.+|.+ .+.| ++..++..|++..++.           .+++.+..++..|              -..+.+ ..+
T Consensus         3 iRiRsrdG~e-Rv~v~~~~~Tl~~LK~~Ie~~-----------L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~   70 (94)
T d1wf9a1           3 LRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQ-----------LQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR   70 (94)
T ss_dssp             EEEECSSCEE-EEEECCTTSBHHHHHHHHHHH-----------SCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB
T ss_pred             EEEEecCCce-EEEecCCCCcHHHHHHHHHHH-----------hCCCcccceeecChhhhccCCccccchhhhccCCccC
Confidence            7888889954 4566 4567999999999999           7787777666443              222343 355


Q ss_pred             ccccCCCCCCEEEEEee
Q psy4523          81 PSTLEMEEGDTIEIYQQ   97 (126)
Q Consensus        81 P~dL~MeDGD~Idv~~~   97 (126)
                      .++|+|++|.+|.+..+
T Consensus        71 L~sl~i~hGsivyL~y~   87 (94)
T d1wf9a1          71 ISSLNLAHGSMVYLAYE   87 (94)
T ss_dssp             GGGTCCCTTCEEECCCS
T ss_pred             HHHcCccCceEEEEEee
Confidence            89999999999887643

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.20  E-value=0.27  Score=30.15  Aligned_cols=67  Identities=13%  Similarity=0.291  Sum_probs=45.3

Q ss_pred             CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523          25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ   96 (126)
Q Consensus        25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~   96 (126)
                      .+..+.+....+++.|++..+++..+.-...-...+.....+++..||+.+.. +|+    +.|||+|-++.
T Consensus        19 ~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-d~~----L~~gDevai~P   85 (88)
T d1vjka_          19 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-DEE----LKDGDVVGVFP   85 (88)
T ss_dssp             SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-TCB----CCTTCEEEEES
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-CcC----cCCCCEEEEeC
Confidence            57789999999999999999988321111000001123456889999988864 343    89999998763

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.35  E-value=0.32  Score=30.41  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523           8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF   70 (126)
Q Consensus         8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f   70 (126)
                      +..+...|+||+.. ++..+.|+|.++..+..|.+..+++           .+  .+.+++.|
T Consensus         6 ~~~~~~~ikVKv~~-~~D~~~~~l~~~it~~dL~~kI~~r-----------f~--~~~~~lkY   54 (85)
T d1ip9a_           6 STSGLKTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPR-----------ID--TDNFKLQT   54 (85)
T ss_dssp             CCCCCCCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHH-----------HT--SSCEEEEE
T ss_pred             CCCCCCCEEEEEEE-CCcEEEEEeCCCCCHHHHHHHHHHH-----------hC--CCceEEEE
Confidence            35567789999976 4567789999999999999999999           43  35677777

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.22  Score=32.32  Aligned_cols=61  Identities=8%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee--cC--------------CCCCccccCCCCCCE
Q psy4523          28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA--IN--------------EQDTPSTLEMEEGDT   91 (126)
Q Consensus        28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r--L~--------------~~~TP~dL~MeDGD~   91 (126)
                      .+.|.++.+|+.+.+..|++.+         ..+...+++...+|..  |.              -..|..+||++||++
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~---------~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~e   74 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSAS---------LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQE   74 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTT---------CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCE
T ss_pred             eEEcCCCCcHHHHHHHHhhChH---------hhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCE
Confidence            4678899999999999999822         2233445666666652  11              246778999999999


Q ss_pred             EEEEee
Q psy4523          92 IEIYQQ   97 (126)
Q Consensus        92 Idv~~~   97 (126)
                      |.|.-.
T Consensus        75 i~VtD~   80 (92)
T d1y8xb1          75 LAVADV   80 (92)
T ss_dssp             EEEECT
T ss_pred             EEEecC
Confidence            988643

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.56  Score=30.90  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=45.1

Q ss_pred             CCCcEEEEEEeccCCEEEEEecC--CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523          11 TDEHINLKVLGQDNNVVQFKIKK--GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE   88 (126)
Q Consensus        11 ~~~~I~Ikv~~~~g~~v~fkIk~--tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD   88 (126)
                      .++.+.|++..+++..+.+.|..  .-.|..+.+++.+.             ++             ...-|.-+++=||
T Consensus        10 ~~q~lVIRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~-------------~p-------------~at~taFEYEDEd   63 (105)
T d2npta1          10 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQV-------------LP-------------EATTTAFEYEDED   63 (105)
T ss_dssp             --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHH-------------ST-------------TSCCSEEEEECTT
T ss_pred             hcCceEEEEEcCCCceeeeeecCCceeeHHHHHHHHHHh-------------cc-------------cccccceeecccc
Confidence            45678899999999999999994  88999999999998             22             1123444466689


Q ss_pred             CCEEEEE
Q psy4523          89 GDTIEIY   95 (126)
Q Consensus        89 GD~Idv~   95 (126)
                      ||.|.|.
T Consensus        64 GDRITVR   70 (105)
T d2npta1          64 GDRITVR   70 (105)
T ss_dssp             SCEEEEC
T ss_pred             CCEeEEc
Confidence            9999986

>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: MoaD-related protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.00  E-value=0.91  Score=27.74  Aligned_cols=70  Identities=13%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523          29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG  101 (126)
Q Consensus        29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG  101 (126)
                      +.+. .++++.|++..++++...........++ ...+++..||+.+... -.-+--++|||+|.++.-..||
T Consensus        18 ~~v~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~-~~~v~i~vng~~i~~~-~~~~~~l~~gdeV~i~PpvsGG   87 (87)
T d1v8ca1          18 LELP-GATVGEVLENLVRAYPALKEELFEGEGL-AERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFPPVAGG   87 (87)
T ss_dssp             EECC-CSBHHHHHHHHHHHCGGGHHHHEETTEE-CTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEECSCCSE
T ss_pred             EEEc-CCCHHHHHHHHHHHCHHHHHHhcccccc-cceEEEEEcCeeeecc-cCCcccCCCCCEEEEECCCCCC
Confidence            4444 4689999999998842111111111222 3558899999988643 2233457999999999887776

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.75  E-value=0.83  Score=28.38  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523          14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER   47 (126)
Q Consensus        14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~   47 (126)
                      +|+|+|...|+ ++.|.|++.++=+.|++..|++
T Consensus         1 t~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~   33 (84)
T d1ef1a3           1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKT   33 (84)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHH
T ss_pred             CEEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHH
Confidence            47899999987 6999999999999999999999