Psyllid ID: psy4529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
LPTGSSYSYDHHTLSSDPDEKSAFIPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccEEEEccccccccEEEEEccccccccEEEEEcccEEEcccccccccEEEEEEEEEcEEccccccEEEEEEcccccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEEEccccccccccEEEEEcEEEEcEEEEEcccEEEEcccccccccEEEEEEEEcccccccccccEEEEEccccccHHHHHHHHHHHcccccccEccc
Coil and Loop (DISEMBL)
lptgssysydhhtlssdpdeksafipvtrassptstpnshfinantsgwnhctlitshairvqtpprhipgVVEVTLSYkskqfckgapgrfvyvslneptidyGFQRLQkliprhpglyvpl
Flexible Loop (DISEMBL)
lptgssysydhhtlssdpdeksAFIPVTrassptstpNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLqkliprhpglyvpl
Low Complexity Region (SEG)
LPTGSSYSYDHHTLSSDPDEKSAFIPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Disordered region (IsUnstruct)
****************************************FINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLY***
Disordered Region (DISOPRED)
************************IPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Disordered Region (DISEMBL)
*****************PDEKSAFIPVT*********NSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Disordered Region (DISPRO)
*****SY****HTLSSDPDEKSAFIPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LPTGSSYSYDHHTLSSDPDEKSAFIPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
O93375	579	Transcription factor COE2	yes	N/A	0.528	0.112	0.938	1e-31
O73742	598	Transcription factor COE3	N/A	N/A	0.528	0.108	0.938	2e-31
O08791	596	Transcription factor COE3	yes	N/A	0.528	0.109	0.938	2e-31
Q9H4W6	596	Transcription factor COE3	yes	N/A	0.528	0.109	0.938	2e-31
P56721	575	Transcription factor coll	yes	N/A	0.528	0.113	0.969	2e-31
Q8K4J2	599	Transcription factor COE4	no	N/A	0.626	0.128	0.797	3e-31
O08792	575	Transcription factor COE2	no	N/A	0.528	0.113	0.923	3e-31
Q6P4K7	575	Transcription factor coe2	no	N/A	0.528	0.113	0.923	3e-31
Q08DL5	575	Transcription factor COE2	no	N/A	0.528	0.113	0.923	3e-31
Q9HAK2	575	Transcription factor COE2	no	N/A	0.528	0.113	0.923	3e-31

>sp|O93375|COE2_DANRE Transcription factor COE2 OS=Danio rerio GN=coe2 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQKLI
Sbjct: 302 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKLI 361

Query: 114 PRHPG 118
           PRHPG
Sbjct: 362 PRHPG 366

Danio rerio (taxid: 7955)

>sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis GN=coe3 PE=2 SV=2

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 306 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 365

Query: 114 PRHPG 118
           PRHPG
Sbjct: 366 PRHPG 370

Acts transcriptional activator.

Xenopus laevis (taxid: 8355)

>sp|O08791|COE3_MOUSE Transcription factor COE3 OS=Mus musculus GN=Ebf3 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 305 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 364

Query: 114 PRHPG 118
           PRHPG
Sbjct: 365 PRHPG 369

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q9H4W6|COE3_HUMAN Transcription factor COE3 OS=Homo sapiens GN=EBF3 PE=1 SV=2

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 305 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 364

Query: 114 PRHPG 118
           PRHPG
Sbjct: 365 PRHPG 369

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster GN=kn PE=2 SV=2

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%), Gaps = 1/66 (1%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVS-LNEPTIDYGFQRLQKL 112
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVS LNEPTIDYGFQRLQKL
Sbjct: 341 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKL 400

Query: 113 IPRHPG 118
           IPRHPG
Sbjct: 401 IPRHPG 406

May act as a 'second-level regulator' of head patterning. Required for establishment of the PS(-1)/PS0 parasegmental border and formation of the intercalary segment. Required for expression of the segment polarity genes hedgehog, engrailed and wingless, and the segment-identity genes CAP and collar in the intercalary segment. Required at the onset of the gastrulation for the correct formation of the mandibular segment.

Drosophila melanogaster (taxid: 7227)

>sp|Q8K4J2|COE4_MOUSE Transcription factor COE4 OS=Mus musculus GN=Ebf4 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 67/79 (84%), Gaps = 2/79 (2%)

Query: 40  HFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNE 99
             +  N   W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNE
Sbjct: 286 QVVFGNVLLWSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNE 343

Query: 100 PTIDYGFQRLQKLIPRHPG 118
           PTIDYGFQRLQK+IPRHPG
Sbjct: 344 PTIDYGFQRLQKVIPRHPG 362

Seems to weakly activate transcription. Binds an Olf-1 consensus site in vitro.

Mus musculus (taxid: 10090)

>sp|O08792|COE2_MOUSE Transcription factor COE2 OS=Mus musculus GN=Ebf2 PE=1 SV=4

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354

Query: 114 PRHPG 118
           PRHPG
Sbjct: 355 PRHPG 359

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q6P4K7|COE2_XENTR Transcription factor coe2 OS=Xenopus tropicalis GN=ebf2 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 296 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 355

Query: 114 PRHPG 118
           PRHPG
Sbjct: 356 PRHPG 360

May play a pivotal role in the transcriptional cascade that specifies primary neurons in embryos. Stabilizes the higher neural potential of selected progenitor cells that express neurog2/X-ngnr-1 by maintaining Delta-Notch signaling. Thus ensures the transition between neural competence and irreversible commitment to a neural fate. Also promotes neuronal differentiation by activating neurod1 expression, directly or indirectly.

Xenopus tropicalis (taxid: 8364)

>sp|Q08DL5|COE2_BOVIN Transcription factor COE2 OS=Bos taurus GN=EBF2 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354

Query: 114 PRHPG 118
           PRHPG
Sbjct: 355 PRHPG 359

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Bos taurus (taxid: 9913)

>sp|Q9HAK2|COE2_HUMAN Transcription factor COE2 OS=Homo sapiens GN=EBF2 PE=1 SV=4

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354

Query: 114 PRHPG 118
           PRHPG
Sbjct: 355 PRHPG 359

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
195089235	352	GH12956 [Drosophila grimshawi] gi|193905	0.528	0.184	0.984	2e-31
195123809	554	GI21022 [Drosophila mojavensis] gi|19391	0.528	0.117	0.984	3e-31
194882973	557	GG22397 [Drosophila erecta] gi|190658771	0.528	0.116	0.984	3e-31
281363389	556	knot, isoform D [Drosophila melanogaster	0.528	0.116	0.984	3e-31
442623713	524	knot, isoform E [Drosophila melanogaster	0.528	0.124	0.984	3e-31
195486095	659	GE12286 [Drosophila yakuba] gi|194177459	0.528	0.098	0.984	4e-31
241707518	619	hypothetical protein IscW_ISCW021817 [Ix	0.552	0.109	0.928	7e-31
242006753	657	transcription factor COE1, putative [Ped	0.528	0.098	0.984	1e-30
355784642	365	hypothetical protein EGM_02263, partial	0.715	0.241	0.696	1e-30
170048024	418	transcription factor coe3 [Culex quinque	0.528	0.155	0.969	1e-30

>gi|195089235|ref|XP_001997480.1| GH12956 [Drosophila grimshawi] gi|193905995|gb|EDW04862.1| GH12956 [Drosophila grimshawi]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 118 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 177

Query: 114 PRHPG 118
           PRHPG
Sbjct: 178 PRHPG 182

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123809|ref|XP_002006394.1| GI21022 [Drosophila mojavensis] gi|193911462|gb|EDW10329.1| GI21022 [Drosophila mojavensis]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 338 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 397

Query: 114 PRHPG 118
           PRHPG
Sbjct: 398 PRHPG 402

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882973|ref|XP_001975584.1| GG22397 [Drosophila erecta] gi|190658771|gb|EDV55984.1| GG22397 [Drosophila erecta]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 341 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 400

Query: 114 PRHPG 118
           PRHPG
Sbjct: 401 PRHPG 405

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281363389|ref|NP_610990.2| knot, isoform D [Drosophila melanogaster] gi|272432482|gb|AAF58203.2| knot, isoform D [Drosophila melanogaster]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 341 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 400

Query: 114 PRHPG 118
           PRHPG
Sbjct: 401 PRHPG 405

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623713|ref|NP_001260980.1| knot, isoform E [Drosophila melanogaster] gi|440214395|gb|AGB93512.1| knot, isoform E [Drosophila melanogaster]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 308 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 367

Query: 114 PRHPG 118
           PRHPG
Sbjct: 368 PRHPG 372

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195486095|ref|XP_002091358.1| GE12286 [Drosophila yakuba] gi|194177459|gb|EDW91070.1| GE12286 [Drosophila yakuba]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSLNEPTIDYGFQRLQKLI
Sbjct: 443 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLNEPTIDYGFQRLQKLI 502

Query: 114 PRHPG 118
           PRHPG
Sbjct: 503 PRHPG 507

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241707518|ref|XP_002412012.1| hypothetical protein IscW_ISCW021817 [Ixodes scapularis] gi|215505023|gb|EEC14517.1| hypothetical protein IscW_ISCW021817 [Ixodes scapularis]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/70 (92%), Positives = 66/70 (94%), Gaps = 2/70 (2%)

Query: 49  WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
           W+   LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR
Sbjct: 451 WSE--LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 508

Query: 109 LQKLIPRHPG 118
           L KLIPRHPG
Sbjct: 509 LAKLIPRHPG 518

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006753|ref|XP_002424210.1| transcription factor COE1, putative [Pediculus humanus corporis] gi|212507564|gb|EEB11472.1| transcription factor COE1, putative [Pediculus humanus corporis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSL+EPTIDYGFQRLQKLI
Sbjct: 425 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLSEPTIDYGFQRLQKLI 484

Query: 114 PRHPG 118
           PRHPG
Sbjct: 485 PRHPG 489

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355784642|gb|EHH65493.1| hypothetical protein EGM_02263, partial [Macaca fascicularis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 74/102 (72%), Gaps = 14/102 (13%)

Query: 17  DPDEKSAFIPVTRASSPTSTPNSHFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVT 76
           DP E  A  P  +A SP              GW    LIT HAIRVQTPPRHIPGVVEVT
Sbjct: 217 DPSE--AATPCIKAISPGE------------GWATGGLITPHAIRVQTPPRHIPGVVEVT 262

Query: 77  LSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPG 118
           LSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+IPRHPG
Sbjct: 263 LSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPG 304

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170048024|ref|XP_001851500.1| transcription factor coe3 [Culex quinquefasciatus] gi|167870251|gb|EDS33634.1| transcription factor coe3 [Culex quinquefasciatus]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVSL+EPTIDYGFQRLQKLI
Sbjct: 174 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSLSEPTIDYGFQRLQKLI 233

Query: 114 PRHPG 118
           PRHPG
Sbjct: 234 PRHPG 238

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
UNIPROTKB|F1NNP7	414	F1NNP7 "Uncharacterized protei	0.552	0.164	0.885	4.9e-30
UNIPROTKB|F1MGH0	403	F1MGH0 "Uncharacterized protei	0.552	0.168	0.885	4.9e-30
UNIPROTKB|F1PG23	428	EBF3 "Uncharacterized protein"	0.552	0.158	0.885	4.9e-30
UNIPROTKB|B7Z934	427	EBF2 "Transcription factor COE	0.552	0.159	0.871	6.2e-30
UNIPROTKB|F5H645	264	EBF2 "Transcription factor COE	0.552	0.257	0.871	6.2e-30
FB|FBgn0001319	575	kn "knot" [Drosophila melanoga	0.552	0.118	0.915	8.4e-30
ZFIN|ZDB-GENE-990715-11	579	coe2 "coe2" [Danio rerio (taxi	0.552	0.117	0.885	1.1e-29
UNIPROTKB|E1C814	512	EBF2 "Uncharacterized protein"	0.552	0.132	0.871	1.2e-29
UNIPROTKB|F1S899	558	EBF4 "Uncharacterized protein"	0.585	0.129	0.851	1.2e-29
ZFIN|ZDB-GENE-070112-292	548	ebf3 "early B-cell factor 3" [	0.552	0.124	0.885	1.4e-29

UNIPROTKB|F1NNP7 F1NNP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQR
Sbjct:   119 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQR 176

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   177 LQKVIPRHPG 186

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MGH0 F1MGH0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQR
Sbjct:   109 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQR 166

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   167 LQKVIPRHPG 176

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1PG23 EBF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQR
Sbjct:   134 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQR 191

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   192 LQKVIPRHPG 201

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|B7Z934 EBF2 "Transcription factor COE2" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQR
Sbjct:   144 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQR 201

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   202 LQKVIPRHPG 211

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F5H645 EBF2 "Transcription factor COE2" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQR
Sbjct:    23 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQR 80

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:    81 LQKVIPRHPG 90

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

FB|FBgn0001319 kn "knot" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 8.4e-30, P = 8.4e-30
 Identities = 65/71 (91%), Positives = 67/71 (94%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVS-LNEPTIDYGFQ 107
             W+   LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVS LNEPTIDYGFQ
Sbjct:   338 WSE--LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQ 395

Query:   108 RLQKLIPRHPG 118
             RLQKLIPRHPG
Sbjct:   396 RLQKLIPRHPG 406

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0035291 "specification of segmental identity, intercalary segment" evidence=IMP

GO:0035287 "head segmentation" evidence=IMP

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0007389 "pattern specification process" evidence=TAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007350 "blastoderm segmentation" evidence=TAS

GO:0035288 "anterior head segmentation" evidence=TAS

GO:0035289 "posterior head segmentation" evidence=TAS

GO:0035203 "regulation of lamellocyte differentiation" evidence=IMP

GO:0009608 "response to symbiont" evidence=IMP

GO:0045087 "innate immune response" evidence=IMP

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IGI;IMP

GO:0016204 "determination of muscle attachment site" evidence=IMP

GO:0007526 "larval somatic muscle development" evidence=IMP

GO:0042694 "muscle cell fate specification" evidence=IMP

ZFIN|ZDB-GENE-990715-11 coe2 "coe2" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQR
Sbjct:   299 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQR 356

Query:   109 LQKLIPRHPG 118
             LQKLIPRHPG
Sbjct:   357 LQKLIPRHPG 366

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1C814 EBF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 331 (121.6 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQR
Sbjct:   294 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQR 351

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   352 LQKVIPRHPG 361

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1S899 EBF4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 333 (122.3 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 63/74 (85%), Positives = 66/74 (89%)

Query:    45 NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDY 104
             N   W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDY
Sbjct:   246 NVLVWSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDY 303

Query:   105 GFQRLQKLIPRHPG 118
             GFQRLQK+IPRHPG
Sbjct:   304 GFQRLQKVIPRHPG 317

GO:0005634 "nucleus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-070112-292 ebf3 "early B-cell factor 3" [Danio rerio (taxid:7955)]

 Score = 332 (121.9 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query:    49 WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQR 108
             W+   LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQR
Sbjct:   294 WSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQR 351

Query:   109 LQKLIPRHPG 118
             LQK+IPRHPG
Sbjct:   352 LQKVIPRHPG 361

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7ZRJ4	COE2A_XENLA	No assigned EC number	0.9076	0.5284	0.1130	N/A	N/A
Q6P4K7	COE2_XENTR	No assigned EC number	0.9230	0.5284	0.1130	no	N/A
B7ZRI2	COE2B_XENLA	No assigned EC number	0.9230	0.5284	0.1120	N/A	N/A
P56721	COLL_DROME	No assigned EC number	0.9696	0.5284	0.1130	yes	N/A
O08792	COE2_MOUSE	No assigned EC number	0.9230	0.5284	0.1130	no	N/A
O73742	COE3_XENLA	No assigned EC number	0.9384	0.5284	0.1086	N/A	N/A
Q9HAK2	COE2_HUMAN	No assigned EC number	0.9230	0.5284	0.1130	no	N/A
Q9H4W6	COE3_HUMAN	No assigned EC number	0.9384	0.5284	0.1090	yes	N/A
O08791	COE3_MOUSE	No assigned EC number	0.9384	0.5284	0.1090	yes	N/A
Q93705	UNC3_CAEEL	No assigned EC number	0.6307	0.5284	0.1323	yes	N/A
O93375	COE2_DANRE	No assigned EC number	0.9384	0.5284	0.1122	yes	N/A
Q07802	COE1_MOUSE	No assigned EC number	0.9076	0.5284	0.1099	no	N/A
Q08DL5	COE2_BOVIN	No assigned EC number	0.9230	0.5284	0.1130	no	N/A
Q63398	COE1_RAT	No assigned EC number	0.9076	0.5284	0.1113	no	N/A
Q9UH73	COE1_HUMAN	No assigned EC number	0.9076	0.5284	0.1099	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
cd01175	85	cd01175, IPT_COE, IPT domain of the COE family (Co	2e-23

>gnl|CDD|238580 cd01175, IPT_COE, IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

 Score = 86.2 bits (213), Expect = 2e-23
 Identities = 39/43 (90%), Positives = 40/43 (93%)

Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVS 96
          LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRFVY +
Sbjct: 43 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFVYTA 85

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
cd01175	85	IPT_COE IPT domain of the COE family (Col/Olf-1/EB	99.97
KOG3836|consensus	605		99.53
KOG3836|consensus	605		99.49
cd00603	90	IPT_PCSR IPT domain of Plexins and Cell Surface Re	97.62
PF01833	85	TIG: IPT/TIG domain; InterPro: IPR002909 This fami	97.41
cd00102	89	IPT Immunoglobulin-like fold, Plexins, Transcripti	97.4
cd01179	85	IPT_plexin_repeat2 Second repeat of the IPT domain	97.32
smart00429	90	IPT ig-like, plexins, transcription factors.	96.69
cd01180	94	IPT_plexin_repeat1 First repeat of the IPT domain	96.6
cd01181	99	IPT_plexin_repeat3 Third repeat of the IPT domain	91.47
KOG0520|consensus	975		90.72

>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

Probab=99.97  E-value=1.6e-31  Score=189.90  Aligned_cols=71  Identities=62%  Similarity=0.941  Sum_probs=68.5

Q ss_pred             ceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCCce
Q psy4529          26 PVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGR   91 (123)
Q Consensus        26 pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~Pgr   91 (123)
                      |||+||.|+|    ||.+++|+|          |+++.+|+|+|+||+|||+|||+|+||+|+|||+||+||||||+|||
T Consensus         1 P~I~ai~P~eG~~tGGt~VtI~GenF~~gl~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~~~~p~~   80 (85)
T cd01175           1 PCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGR   80 (85)
T ss_pred             CcccEecCCCCcccCCeEEEEECCCCCCCcEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeeccCCCce
Confidence            8999999999    778888999          99999999999999999999999999999999999999999999999


Q ss_pred             eEEee
Q psy4529          92 FVYVS   96 (123)
Q Consensus        92 F~Yt~   96 (123)
                      |+|++
T Consensus        81 f~y~~   85 (85)
T cd01175          81 FVYTA   85 (85)
T ss_pred             EEecC
Confidence            99985

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.

>KOG3836|consensus

Probab=99.53  E-value=6e-15  Score=131.76  Aligned_cols=97  Identities=16%  Similarity=0.130  Sum_probs=89.2

Q ss_pred             cceeeecCCCC----CCCeEEEec----------cC--------C---ccccccccccccccccCCCCCCCcceEEEEEe
Q psy4529          25 IPVTRASSPTS----TPNSHFINA----------NT--------S---GWNHCTLITSHAIRVQTPPRHIPGVVEVTLSY   79 (123)
Q Consensus        25 ~pci~aisp~e----~g~s~iiig----------~~--------t---~~vwsELItpHAiRVqTPPrh~PGvVeVTLsy   79 (123)
                      +|||+++.|++    ++-.+.|+|          |.        +   +..|+|.+++|||++|+|+++.. +|++||++
T Consensus       322 ~~~i~~yvp~t~~q~~~~al~ivg~n~~~~l~~a~~~~~~s~~~~~~~~~~n~~~~s~~aI~~~~~~~~~s-~~~lSl~~  400 (605)
T KOG3836|consen  322 TKAIFTYVPSTDRQLIEYALQIVGLNMNGKLEDARNIANSSLSPTSPMMNNNSEQLSPYAIMSQKPTNNLS-TVNLSLCD  400 (605)
T ss_pred             cccceeeecCCCceeeeeEEEEecccccCchhhhcCCccccCCCCCcceeccccccCccceeeecCCCCCC-ccceeeeh
Confidence            59999999999    666777888          33        3   56899999999999999999999 99999999


Q ss_pred             eccccccCCCceeEEe-ecCCCcchhhhhhhhhhcCCCCCCCCC
Q psy4529          80 KSKQFCKGAPGRFVYV-SLNEPTIDYGFQRLQKLIPRHPGLYVP  122 (123)
Q Consensus        80 KsKqfckg~PgrF~Yt-~l~EPtIdygFqRLqKliPRhPGDPE~  122 (123)
                      +.++||.+.+++|.|+ .+++|.||++||++++.+|++||||+-
T Consensus       401 ~~~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~  444 (605)
T KOG3836|consen  401 VRAALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRI  444 (605)
T ss_pred             hhhhhcCCccceeeeecccCccchhcccccccccccCCCCCHHH
Confidence            9999999999999999 589999999999999999999999973

>KOG3836|consensus

Probab=99.49  E-value=7.6e-15  Score=131.13  Aligned_cols=99  Identities=25%  Similarity=0.164  Sum_probs=90.1

Q ss_pred             ccceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCC
Q psy4529          24 FIPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAP   89 (123)
Q Consensus        24 ~~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~P   89 (123)
                      -+||.+...|..    .+...+|++          |..+.+|.+.+|||++|++|++++.+|+||+++.++++|+|.|.|
T Consensus        67 ~v~~~~~~~~~~ahfek~~p~~l~~~nffH~~~~~F~~m~ly~rn~tp~S~~v~te~~~~~~~vE~d~e~~s~~~~~G~~  146 (605)
T KOG3836|consen   67 IVFNSKQLFPIRAHFEKDLPTRLVCYNFFHKAQNGFVVMALYKRNITPTSIRVETERTQFPGFVEDDLEQKSPQSNNGFP  146 (605)
T ss_pred             cccccccccchhhhcccCCCccccccceecccccceEEEEeecccCCccccceeccccccCceeecchhhcCchhccCCC
Confidence            367888888876    555555554          778999999999999999999999999999999999999999999


Q ss_pred             ceeEEee---------cCCCcchhhhhhhhhhcCCCCCCCCC
Q psy4529          90 GRFVYVS---------LNEPTIDYGFQRLQKLIPRHPGLYVP  122 (123)
Q Consensus        90 grF~Yt~---------l~EPtIdygFqRLqKliPRhPGDPE~  122 (123)
                      +||.|..         ++++.|||+++|.|+.+++++++||-
T Consensus       147 y~~~ll~~n~~~~~~~l~~rlID~~~~~~~it~~~q~knpel  188 (605)
T KOG3836|consen  147 YRFQLLPENGVRVEIPLNVRLIDSGVTKQQITYLGQDKNPEL  188 (605)
T ss_pred             ceeeecCCCCceeeeeccccccccccccccccccccCCChhh
Confidence            9999999         99999999999999999999999983

>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins

Probab=97.62  E-value=0.00028  Score=45.87  Aligned_cols=70  Identities=26%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCcc----c-------cccccccccccccCCCCCCCcceEEEEEeecccc--cc
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSGW----N-------HCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQF--CK   86 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~~----v-------wsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqf--ck   86 (123)
                      |.|.+|+|++   .|++.| |.|  |....    |       .-..++...|.+++|+...+|-..|++.++++.+  +.
T Consensus         1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~~~~   80 (90)
T cd00603           1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVSARV   80 (90)
T ss_pred             CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCccccccc
Confidence            7899999998   566666 777  43331    1       1112368899999999988855666666666653  77


Q ss_pred             CCCceeEEe
Q psy4529          87 GAPGRFVYV   95 (123)
Q Consensus        87 g~PgrF~Yt   95 (123)
                      .++.+|.|.
T Consensus        81 ~~~~~F~Y~   89 (90)
T cd00603          81 LSNTTFTYV   89 (90)
T ss_pred             cCCcceEEe
Confidence            888899986

This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold

Probab=97.41  E-value=0.00023  Score=44.29  Aligned_cols=67  Identities=22%  Similarity=0.336  Sum_probs=49.1

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--c-----------CCcccccc-ccccccccccCCCCCCCcceEEEEEeeccccccC
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--N-----------TSGWNHCT-LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG   87 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~-----------~t~~vwsE-LItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg   87 (123)
                      |.|.+++|+.   .|++.| |.|  |           +....... .++...|+++.|+.. +|.+.|.+...+ +.+..
T Consensus         1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~-~~~~~v~v~~~~-~~~~~   78 (85)
T PF01833_consen    1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVITVVSSTQITCTSPALP-SGNVNVSVTVNG-QQIYS   78 (85)
T ss_dssp             SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEEGEEETTEEEEE--SCS-SEEEEEEEEETT-SEEEE
T ss_pred             CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEEEEECCcEEEEEECCCC-CccEEEEEEECC-cCeEE
Confidence            8899999987   445666 888  3           22233334 788899999997766 889999999988 66667


Q ss_pred             CCceeEE
Q psy4529          88 APGRFVY   94 (123)
Q Consensus        88 ~PgrF~Y   94 (123)
                      ++..|.|
T Consensus        79 ~~~~F~Y   85 (85)
T PF01833_consen   79 NNTSFTY   85 (85)
T ss_dssp             EEEEEEE
T ss_pred             CCeeeEC
Confidence            7778887

These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....

>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT)

Probab=97.40  E-value=0.00097  Score=42.23  Aligned_cols=69  Identities=35%  Similarity=0.430  Sum_probs=45.5

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCc-----------cccccccccccccccCCCCCCC--cceEEEEEeecccccc
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSG-----------WNHCTLITSHAIRVQTPPRHIP--GVVEVTLSYKSKQFCK   86 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~-----------~vwsELItpHAiRVqTPPrh~P--GvVeVTLsyKsKqfck   86 (123)
                      |.|.+|+|+.   .|++.| |.|  |...           ......++.+.|.+.+|+....  |.++|++..... .+.
T Consensus         1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~-~~~   79 (89)
T cd00102           1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNG-GIT   79 (89)
T ss_pred             CEEeEEECCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCC-ccc
Confidence            6788999988   456666 777  3222           1111234688999999998887  555555543322 556


Q ss_pred             CCCceeEEe
Q psy4529          87 GAPGRFVYV   95 (123)
Q Consensus        87 g~PgrF~Yt   95 (123)
                      .++..|.|+
T Consensus        80 ~~~~~F~Y~   88 (89)
T cd00102          80 SSPLTFTYV   88 (89)
T ss_pred             CCCccEEee
Confidence            777789886

IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.

>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=97.32  E-value=0.0012  Score=43.79  Aligned_cols=68  Identities=25%  Similarity=0.357  Sum_probs=49.0

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCc---ccc--c-c----ccccccccccCCCCCCCcceEEEEEeeccccccCCC
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSG---WNH--C-T----LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAP   89 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~---~vw--s-E----LItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~P   89 (123)
                      |.|.+|+|++   .|++.| |.|  |.+.   -||  . +    -.+..-|.+.||+....|.++|++.+.+.++-  ++
T Consensus         1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~~--~~   78 (85)
T cd01179           1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARRL--AP   78 (85)
T ss_pred             CeeeEEcCCCCCCCCCEEEEEEEECCCCCCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCcccC--CC
Confidence            7899999999   577777 888  4332   111  1 1    12455799999999889999999999887443  46


Q ss_pred             ceeEEe
Q psy4529          90 GRFVYV   95 (123)
Q Consensus        90 grF~Yt   95 (123)
                      ..|.|+
T Consensus        79 ~~F~Y~   84 (85)
T cd01179          79 LVFTYT   84 (85)
T ss_pred             ccEEEe
Confidence            889986

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>smart00429 IPT ig-like, plexins, transcription factors

Probab=96.69  E-value=0.0077  Score=38.96  Aligned_cols=69  Identities=35%  Similarity=0.495  Sum_probs=46.5

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCcc-------ccc---ccc--ccccccccCCCCC-CCcceEE-EEEeeccccc
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSGW-------NHC---TLI--TSHAIRVQTPPRH-IPGVVEV-TLSYKSKQFC   85 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~~-------vws---ELI--tpHAiRVqTPPrh-~PGvVeV-TLsyKsKqfc   85 (123)
                      |.|.+++|+.   .|++.| |.|  |.+..       .|.   .++  +...|.+.+|+.+ .++-+.| ++.+....+ 
T Consensus         2 P~I~~i~P~~g~~~GGt~iti~G~nf~~~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~~~~~-   80 (90)
T smart00429        2 PVITRISPTSGPVSGGTEITLCGKNLDSISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLRNGGV-   80 (90)
T ss_pred             CEEEEEccCcCcCCCCeEEEEeeecCCcceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEeCCCc-
Confidence            8899999998   466677 777  33321       131   233  5678999999988 7777777 666655544 


Q ss_pred             cCCCceeEEe
Q psy4529          86 KGAPGRFVYV   95 (123)
Q Consensus        86 kg~PgrF~Yt   95 (123)
                      .+.+.+|.|.
T Consensus        81 ~~~~~~f~y~   90 (90)
T smart00429       81 PSSPQPFTYV   90 (90)
T ss_pred             cCcccCeEEC
Confidence            3446778774

>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=96.60  E-value=0.012  Score=40.06  Aligned_cols=70  Identities=20%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCcc------c--cc---c-----ccccccccccCCCCCCC-cceEEEEEeecc
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSGW------N--HC---T-----LITSHAIRVQTPPRHIP-GVVEVTLSYKSK   82 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~~------v--ws---E-----LItpHAiRVqTPPrh~P-GvVeVTLsyKsK   82 (123)
                      |.|-+++|..   .|+++| |-|  |....      |  ..   .     -.+.+.|.++|+|...+ +...|.+.+.++
T Consensus         1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~~   80 (94)
T cd01180           1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGHG   80 (94)
T ss_pred             CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECCc
Confidence            7899999999   467888 777  44431      1  11   1     23567899999987655 788888888887


Q ss_pred             ccccCCCceeEEe
Q psy4529          83 QFCKGAPGRFVYV   95 (123)
Q Consensus        83 qfckg~PgrF~Yt   95 (123)
                      +|+.-....|.|+
T Consensus        81 ~~~~~~~~~F~Y~   93 (94)
T cd01180          81 SFRTESSEGFSFV   93 (94)
T ss_pred             eecccccCceEEe
Confidence            7777677889987

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=91.47  E-value=0.82  Score=31.81  Aligned_cols=57  Identities=14%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             ceeeecCCCC---CCCeEE-Eec--cCCc-----ccc--------ccccccccccccCCCCCC------CcceEEEEEee
Q psy4529          26 PVTRASSPTS---TPNSHF-INA--NTSG-----WNH--------CTLITSHAIRVQTPPRHI------PGVVEVTLSYK   80 (123)
Q Consensus        26 pci~aisp~e---~g~s~i-iig--~~t~-----~vw--------sELItpHAiRVqTPPrh~------PGvVeVTLsyK   80 (123)
                      |.|.+|+|+-   .|+++| |.|  |.++     .||        ..+.+...|.+.||+-..      ++...|.+.+.
T Consensus         1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~fd   80 (99)
T cd01181           1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSLALLNRSPEPGERPVEFGLD   80 (99)
T ss_pred             CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCceeccceeCCCCEEEeCCCCCcccccccCCCCcCeEEEEe
Confidence            7899999988   688888 888  2222     221        224677888999988765      24445555554


Q ss_pred             cc
Q psy4529          81 SK   82 (123)
Q Consensus        81 sK   82 (123)
                      ..
T Consensus        81 ~~   82 (99)
T cd01181          81 GD   82 (99)
T ss_pred             cc
Confidence            43

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>KOG0520|consensus

Probab=90.72  E-value=0.45  Score=46.01  Aligned_cols=73  Identities=23%  Similarity=0.358  Sum_probs=55.2

Q ss_pred             eeecCCCC----CCCeEEEec-------------cCCccccccccccccccccCCCCCCCcceEEEEEee-ccccccCCC
Q psy4529          28 TRASSPTS----TPNSHFINA-------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYK-SKQFCKGAP   89 (123)
Q Consensus        28 i~aisp~e----~g~s~iiig-------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyK-sKqfckg~P   89 (123)
                      |.-+||..    +|.-++|+|             |+-..|=.|||.+=-+|+.+|| |-||+|...+... +..+|.-.=
T Consensus       407 I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~-h~~G~V~l~V~c~~~~~~~se~r  485 (975)
T KOG0520|consen  407 ITDFSPEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPP-HEPGVVNLQVTCRISGLACSEVR  485 (975)
T ss_pred             eeccCcccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCc-cCCCeEEEEEEecccceeeeeeh
Confidence            66677765    777788999             5555677789999999999988 9999999999888 777776443


Q ss_pred             ceeEEeecCCCcc
Q psy4529          90 GRFVYVSLNEPTI  102 (123)
Q Consensus        90 grF~Yt~l~EPtI  102 (123)
                       -|-|..+..+-|
T Consensus       486 -ef~~~~~~~~~~  497 (975)
T KOG0520|consen  486 -EFAYLVQPSQQI  497 (975)
T ss_pred             -heeecccCcccc
Confidence             455655444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
3mlp_A	402	Early B-Cell Factor 1 (Ebf1) Bound To Dna Length =		2e-32
3n50_A	159	Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH		3e-32
3muj_A	138	Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATIO		7e-32
3mqi_A	96	Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN Le		2e-20

>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna Length = 402

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 274 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVI 333
Query: 114 PRHPG 118
           PRHPG
Sbjct: 334 PRHPG 338

>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH DOMAINS Length = 159

Iteration: 1
 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 49  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 108
Query: 114 PRHPG 118
           PRHPG
Sbjct: 109 PRHPG 113

>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION HELICES Length = 138

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 48  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 107
Query: 114 PRHPG 118
           PRHPG
Sbjct: 108 PRHPG 112

>pdb|3MQI|A Chain A, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN Length = 96

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPT 101
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPT
Sbjct: 49  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPT 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
3mlp_A	402	Transcription factor COE1; transcription factor, p	3e-20
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	4e-19

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Length = 402

 Score = 83.4 bits (205), Expect = 3e-20
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 53  TLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKL 112
            LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+
Sbjct: 273 ELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKV 332

Query: 113 IPRHPG 118
           IPRHPG
Sbjct: 333 IPRHPG 338

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138

 Score = 76.2 bits (187), Expect = 4e-19
 Identities = 61/67 (91%), Positives = 63/67 (94%)

Query: 52  CTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQK 111
             LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK
Sbjct: 46  SELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQK 105

Query: 112 LIPRHPG 118
           +IPRHPG
Sbjct: 106 VIPRHPG 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	100.0
3mlp_A	402	Transcription factor COE1; transcription factor, p	100.0
2cxk_A	95	Camta1, calmodulin binding transcription activator	97.75
1uad_C	99	RSEC5, exocyst complex component SEC5; small GTP-b	92.1
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	85.15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	84.08
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	83.85
2uzx_B	727	Hepatocyte growth factor receptor; signaling prote	81.46

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=100.00  E-value=2.8e-51  Score=308.61  Aligned_cols=99  Identities=68%  Similarity=1.019  Sum_probs=95.5

Q ss_pred             cceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCCc
Q psy4529          25 IPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG   90 (123)
Q Consensus        25 ~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~Pg   90 (123)
                      .|||++|+|+|    ||..++|+|          |++..+|+|+||||||||+||||++||+|||||+||+||||+|+||
T Consensus         5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~~GlqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf~~g~p~   84 (138)
T 3muj_A            5 TPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG   84 (138)
T ss_dssp             CCEEEEEESSEEETTCCCEEEEEEESCCTTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEECTTSCE
T ss_pred             CCceeEecCCCCCccCCeEEEEeCCCcccCCEEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCcccccCCCc
Confidence            49999999999    677777999          8899999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCCCcchhhhhhhhhhcCCCCCCCCCC
Q psy4529          91 RFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL  123 (123)
Q Consensus        91 rF~Yt~l~EPtIdygFqRLqKliPRhPGDPE~~  123 (123)
                      ||.|++||||+||||||||||+|||||||||.|
T Consensus        85 ~F~Y~~l~ePtId~gfqrl~k~~pr~pgdpe~l  117 (138)
T 3muj_A           85 RFVYTALNEPTIDYGFQRLQKVIPRHPGDPERL  117 (138)
T ss_dssp             EEEEECCCSCCHHHHHHHHHHHSCCCTTCCSSC
T ss_pred             eEEEecCCCCccccchhhhccccCCCCCChhhh
Confidence            999999999999999999999999999999986

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A

Probab=100.00  E-value=2.6e-49  Score=335.49  Aligned_cols=109  Identities=63%  Similarity=0.958  Sum_probs=89.5

Q ss_pred             ccccCCCCCCcccceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEE
Q psy4529          13 TLSSDPDEKSAFIPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLS   78 (123)
Q Consensus        13 ~~~~dp~e~~a~~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLs   78 (123)
                      +-.+||+|  +..|||++|+|+|    ||.+++|+|          |+++.+|+|+||||||||+|||+++||+|||||+
T Consensus       221 a~r~~~s~--~~tP~IkaIsPnEG~~tGG~tV~IiGenFf~GLQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs  298 (402)
T 3mlp_A          221 ARRLDPSE--AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLS  298 (402)
T ss_dssp             CCCCCTTT--TSCCEEEECSSCEECTTCCCEEEEEEECCCTTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEE
T ss_pred             cccCCccc--CCCcceEEecCCCCCccCCeEEEEeCCCcccCCEEEEccEeeeeEEecccceEEECCCCCCCCceEEEEE
Confidence            45678888  5679999999999    677777999          8999999999999999999999999999999999


Q ss_pred             eeccccccCCCceeEEeecCCCcchhhhhhhhhhcCCCCCCCCCC
Q psy4529          79 YKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL  123 (123)
Q Consensus        79 yKsKqfckg~PgrF~Yt~l~EPtIdygFqRLqKliPRhPGDPE~~  123 (123)
                      ||+||||+|+||||+|++|||||||||||||||+|||||||||.|
T Consensus       299 ~ksKqf~kg~pgrF~YtALnePtIdygfqRLqK~iPrhpGdpErL  343 (402)
T 3mlp_A          299 YKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERL  343 (402)
T ss_dssp             ETTEEESTTSCEEEEEC---CCTTTTTTTTTTTC-----------
T ss_pred             ecCcccccCCCCceeeecCCCCccccchhhhcccCCCCCCChHhC
Confidence            999999999999999999999999999999999999999999986

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1

Probab=97.75  E-value=3.3e-05  Score=53.07  Aligned_cols=69  Identities=19%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             cceeeecCCCC---CCCeEE-Eec------------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCC
Q psy4529          25 IPVTRASSPTS---TPNSHF-INA------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGA   88 (123)
Q Consensus        25 ~pci~aisp~e---~g~s~i-iig------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~   88 (123)
                      +=.|..+||+.   .|++.| |.|            |+...+=.|++++-.||++||| |.||.|.|.+..-++. + ..
T Consensus         6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~vpa~~~s~~vl~C~tPp-~~~G~v~~~v~~d~~~-~-s~   82 (95)
T 2cxk_A            6 SGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPA-HDTGLVTLQVAFNNQI-I-SN   82 (95)
T ss_dssp             CSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECEEEETTEEEEECCC-CCSEEEEEEEEETTEE-C-SC
T ss_pred             cEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEEEeEEEeECCEEEEEecC-CCCceEeEEEEECCee-c-CC
Confidence            34577888887   566665 777            3333344678999999999999 7999999999977665 4 67


Q ss_pred             CceeEEee
Q psy4529          89 PGRFVYVS   96 (123)
Q Consensus        89 PgrF~Yt~   96 (123)
                      ...|-|..
T Consensus        83 ~~~FeY~~   90 (95)
T 2cxk_A           83 SVVFEYKS   90 (95)
T ss_dssp             CEEEEECC
T ss_pred             ceEEEEeC
Confidence            77799973

>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A

Probab=92.10  E-value=0.22  Score=33.56  Aligned_cols=70  Identities=17%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             cccceeeecCCCCC-CCeEE-Eec--cCCccc--c------------ccccccccccccCCCCC-CCcceEEEEEeeccc
Q psy4529          23 AFIPVTRASSPTST-PNSHF-INA--NTSGWN--H------------CTLITSHAIRVQTPPRH-IPGVVEVTLSYKSKQ   83 (123)
Q Consensus        23 a~~pci~aisp~e~-g~s~i-iig--~~t~~v--w------------sELItpHAiRVqTPPrh-~PGvVeVTLsyKsKq   83 (123)
                      -+.|.|..|+|.+| .++++ |-|  |+....  +            .+-.+..-|.+.++|.. ..|.|+|+..  ++ 
T Consensus         5 ~p~P~It~i~P~~Gp~GT~vTI~G~nlg~~~sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~--~~-   81 (99)
T 1uad_C            5 RQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTK--SG-   81 (99)
T ss_dssp             CCCCEEEEEESSEESTTCEEEEEEECSCSSGGGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEET--TT-
T ss_pred             CCCCEEEEEECCCcCCCCEEEEEEEeCCCCcccceEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEEC--CC-
Confidence            34699999999997 45777 766  443321  1            12345667888886653 3788888773  22 


Q ss_pred             cccCCCceeEEe
Q psy4529          84 FCKGAPGRFVYV   95 (123)
Q Consensus        84 fckg~PgrF~Yt   95 (123)
                      +..-++.+|.|+
T Consensus        82 ~~~~s~~~F~y~   93 (99)
T 1uad_C           82 GRGTSTVSFKLL   93 (99)
T ss_dssp             EECEESSCCEEC
T ss_pred             CcEEecceEEEe
Confidence            222345689997

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=85.15  E-value=2  Score=33.95  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             eeeecCCCC-CCCe-EEEec--cCCcc----cc-----cccc--ccccccccCCCCCCCcceEEEEEeeccc--cccCCC
Q psy4529          27 VTRASSPTS-TPNS-HFINA--NTSGW----NH-----CTLI--TSHAIRVQTPPRHIPGVVEVTLSYKSKQ--FCKGAP   89 (123)
Q Consensus        27 ci~aisp~e-~g~s-~iiig--~~t~~----vw-----sELI--tpHAiRVqTPPrh~PGvVeVTLsyKsKq--fckg~P   89 (123)
                      +|..++|.| +.++ ++|.|  |++..    ||     ..++  +..-|.|..|.....|-++|++.-.++.  +---+.
T Consensus        21 ~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~~~~~~~~~~~~  100 (433)
T 4hw6_A           21 VVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCE  100 (433)
T ss_dssp             EEEEEESSEECTTCEEEEEEECCCSCGGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEEEEECS
T ss_pred             EEEEECCCCCCCCCEEEEEeECCCCCcceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecCCcceeeEEEee
Confidence            999999999 4444 55778  76653    22     1233  4567889998888889999988655542  112235


Q ss_pred             ceeEEe
Q psy4529          90 GRFVYV   95 (123)
Q Consensus        90 grF~Yt   95 (123)
                      .+|.|.
T Consensus       101 ~~F~y~  106 (433)
T 4hw6_A          101 AKFDYQ  106 (433)
T ss_dssp             SCCEEC
T ss_pred             eEEEEE
Confidence            577775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=84.08  E-value=1.9  Score=33.94  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             cceeeecCCCC-CCCeEE-Eec--cCCcc----cc-----ccc--cccccccccCCCCCCCcceEEEEEeeccc--cccC
Q psy4529          25 IPVTRASSPTS-TPNSHF-INA--NTSGW----NH-----CTL--ITSHAIRVQTPPRHIPGVVEVTLSYKSKQ--FCKG   87 (123)
Q Consensus        25 ~pci~aisp~e-~g~s~i-iig--~~t~~----vw-----sEL--ItpHAiRVqTPPrh~PGvVeVTLsyKsKq--fckg   87 (123)
                      -|+|..++|.+ ++++.+ |.|  |++..    |+     ..+  .+..-|.|..|.....|.++|++.-+.|.  |---
T Consensus        17 p~~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~~~~~~~~~~   96 (430)
T 3tc9_A           17 PVVISEFSPKEGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIANTE   96 (430)
T ss_dssp             CCEEEEEECSEECTTCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCCCCCCCCEEEEEEEcCCCCccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecCCcceeeEEE
Confidence            34999999999 455555 777  76643    22     112  46778889997666559999998776642  1122


Q ss_pred             CCceeEEe
Q psy4529          88 APGRFVYV   95 (123)
Q Consensus        88 ~PgrF~Yt   95 (123)
                      ++.+|.|.
T Consensus        97 ~~~~F~y~  104 (430)
T 3tc9_A           97 ANEKFVYQ  104 (430)
T ss_dssp             CSSCCEEC
T ss_pred             EeeEEEEE
Confidence            46788775

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=83.85  E-value=0.21  Score=43.74  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=1.6

Q ss_pred             cceeeecCCCC---CCCeEE-Eec--cCCcc---cc-c------cccccccccccCCCCCCCcceEEEEEeecccc
Q psy4529          25 IPVTRASSPTS---TPNSHF-INA--NTSGW---NH-C------TLITSHAIRVQTPPRHIPGVVEVTLSYKSKQF   84 (123)
Q Consensus        25 ~pci~aisp~e---~g~s~i-iig--~~t~~---vw-s------ELItpHAiRVqTPPrh~PGvVeVTLsyKsKqf   84 (123)
                      .|.|.+|+|+.   .|++.| |.|  |.+.-   |. .      ...+...|.+.|||...+|.+.|++...+.++
T Consensus       635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~~C~i~~~s~t~I~C~tP~~~~~g~~~V~V~idg~~~  710 (727)
T 2uzx_B          635 DPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKIDLANR  710 (727)
T ss_dssp             CC--------------------------------------------------------------------------
T ss_pred             cceeEEECCCccccCCCEEEEEEEECCCCCCceEEEECCEEeeEEeecCCEEEEEcCCCCCCceEEEEEEECCEEe
Confidence            69999999998   356666 777  33221   00 0      22567789999999999999999998877664

>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A

Probab=81.46  E-value=0.77  Score=40.23  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=39.6

Q ss_pred             cceeeecCCCC---CCCeEE-Eec--cCCc----------ccc---------ccccccccccccCCCCCCCcceEEEEEe
Q psy4529          25 IPVTRASSPTS---TPNSHF-INA--NTSG----------WNH---------CTLITSHAIRVQTPPRHIPGVVEVTLSY   79 (123)
Q Consensus        25 ~pci~aisp~e---~g~s~i-iig--~~t~----------~vw---------sELItpHAiRVqTPPrh~PGvVeVTLsy   79 (123)
                      .|.|.+|+|+.   .|++.| |.|  |+..          -|.         .+..+...|.+.+||.. .|..+|++..
T Consensus       541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~-~~~~~v~V~v  619 (727)
T 2uzx_B          541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAM-NKHFNMSIII  619 (727)
T ss_dssp             CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC------CCCEEEE
T ss_pred             CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCC-CCCccEEEEE
Confidence            69999999998   356666 888  4421          111         01246678999998865 3444444443


Q ss_pred             eccccccCCCceeEEeecCCCcch
Q psy4529          80 KSKQFCKGAPGRFVYVSLNEPTID  103 (123)
Q Consensus        80 KsKqfckg~PgrF~Yt~l~EPtId  103 (123)
                      .+.+. ...+..|.|+   .|+|.
T Consensus       620 ~~~~~-~~~~~~FtY~---~P~I~  639 (727)
T 2uzx_B          620 SNGHG-TTQYSTFSYV---DPVIT  639 (727)
T ss_dssp             ECSSC-EEEEECCBCC---CC---
T ss_pred             eCCcc-eecccccccc---cceeE
Confidence            33221 1235578885   67664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1p7hl1	103	b.1.18.1 (L:576-678) T-cell transcription factor N	1e-05

>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT1 (NFATC2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 53  TLITSHAIRVQTPPRHIPGV---VEVTLSYKSKQFCKGAPGRFVYVSL 97
                + + V+ P      +   V+V     + +  +  P  F Y  +
Sbjct: 56  DKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1p7hl1	103	T-cell transcription factor NFAT1 (NFATC2) {Human	98.72
d2cxka1	82	Calmodulin binding transcription activator 1 {Huma	98.48
d1cxla1	87	Cyclomaltodextrin glycanotransferase, domain D {Ba	95.57
d1qhoa1	81	Five domain "maltogenic" alpha-amylase (glucan 1,4	95.37
d1uadc_	92	Exocyst complex component Sec5, Ral-binding domain	95.2
d1cyga1	83	Cyclomaltodextrin glycanotransferase, domain D {Ba	94.17
d3bmva1	83	Cyclomaltodextrin glycanotransferase, domain D {Th	91.47

>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT1 (NFATC2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.9e-08  Score=68.53  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=60.9

Q ss_pred             ccceeeecCCCC----CCCeEEEec----------cC-----Cccccc-------cccccccccccCCCCCCCcc---eE
Q psy4529          24 FIPVTRASSPTS----TPNSHFINA----------NT-----SGWNHC-------TLITSHAIRVQTPPRHIPGV---VE   74 (123)
Q Consensus        24 ~~pci~aisp~e----~g~s~iiig----------~~-----t~~vws-------ELItpHAiRVqTPPrh~PGv---Ve   74 (123)
                      +.|.|.++||++    ||..++|+|          |+     ...+|.       +++..+||.++|||.+-+++   |+
T Consensus         1 ~~P~I~~~s~~sgpv~GG~ev~llg~~f~~~~~V~F~e~~~~~~~~We~~~~~~~~v~~q~aIv~~tPpy~~~~i~~pV~   80 (103)
T d1p7hl1           1 ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVK   80 (103)
T ss_dssp             CCCEEEEESCSEEETTCCCEEEEEEESCCSSCEEEEEEECSSSCEEEEEEECBCTTTCBTTEEEEECCCCSCTTCSSCEE
T ss_pred             CCCeEEEEcCCCcccCCCcEEEEEecccCCCCEEEEEecCCCccEEEEEeeecCccceeeeEEEEECCCCCCCCCcccEE
Confidence            479999999999    777777998          22     234685       47789999999999887776   99


Q ss_pred             EEEEeeccccccCCCceeEEeec
Q psy4529          75 VTLSYKSKQFCKGAPGRFVYVSL   97 (123)
Q Consensus        75 VTLsyKsKqfckg~PgrF~Yt~l   97 (123)
                      |+++.++.....+.|..|.|+-|
T Consensus        81 V~v~l~~s~~~~S~~~~FtY~P~  103 (103)
T d1p7hl1          81 VNFYVINGKRKRSQPQHFTYHPV  103 (103)
T ss_dssp             EEEEEEETTTEECCCEEEEEECC
T ss_pred             EEEEEEcCCCcccCCCCEEEeeC
Confidence            99999888888899999999853

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.2e-08  Score=60.68  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             eeeecCCCC---CCCeEE-Eec------------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCCc
Q psy4529          27 VTRASSPTS---TPNSHF-INA------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG   90 (123)
Q Consensus        27 ci~aisp~e---~g~s~i-iig------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~Pg   90 (123)
                      +|.+|||+.   .|++.+ |.|            |++..+....++...|++.||| |.+|.|+|+++..++.++  ++.
T Consensus         1 vIt~isP~~G~~~GGt~V~I~G~~f~~~~~~~c~fG~~~~~~~~vs~~~i~C~tP~-~~~G~v~v~Vs~ng~~~s--~~~   77 (82)
T d2cxka1           1 MVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPA-HDTGLVTLQVAFNNQIIS--NSV   77 (82)
T ss_dssp             CCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECEEEETTEEEEECCC-CCSEEEEEEEEETTEECS--CCE
T ss_pred             CEeEEcCCceeCCCCEEEEEEEccccccceEEEEEEeeecceEEEeeeEEEEEcCc-ccceeEEEEEEECCEEec--cCc
Confidence            467888887   445555 888            6666777789999999999986 679999999999888776  445


Q ss_pred             eeEE
Q psy4529          91 RFVY   94 (123)
Q Consensus        91 rF~Y   94 (123)
                      .|.|
T Consensus        78 ~F~Y   81 (82)
T d2cxka1          78 VFEY   81 (82)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7877

>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus circulans, different strains [TaxId: 1397]

Probab=95.57  E-value=0.0096  Score=36.88  Aligned_cols=69  Identities=14%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             cceeeecCCCC-CCCeEE-Eec--cCCcc----c------cccc--cccccccccCCCCCCCcceEEEEEeeccccccCC
Q psy4529          25 IPVTRASSPTS-TPNSHF-INA--NTSGW----N------HCTL--ITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGA   88 (123)
Q Consensus        25 ~pci~aisp~e-~g~s~i-iig--~~t~~----v------wsEL--ItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~   88 (123)
                      +|.|.+|+|++ .+++.+ |.|  |+...    +      =.++  .+---|+|.+| .+.+|.++|++...+.+-+...
T Consensus         2 tP~I~sisP~~g~~Gt~VTI~G~~F~~~~~~V~v~~~~~~~~~v~s~s~t~I~~~vP-~~~~g~~~v~V~~~~g~~s~~~   80 (87)
T d1cxla1           2 TPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIP-AVAGGNYNIKVANAAGTASNVY   80 (87)
T ss_dssp             SCEEEEEECSEECTTCEEEEEEECCCSSCCEEEETTEEEEGGGEEEEETTEEEEECC-CCCSEEEEEEEECTTCCBCCCE
T ss_pred             CCEEEEEeCCCCCCCCEEEEEEECCCCCCceEEEeeecCcEEEEEEeCCCEEEEEEC-CCCCceEEEEEEeCCCcEEeec
Confidence            69999999999 344555 777  43321    0      1122  23456999995 5679999999988877665433


Q ss_pred             CceeEEe
Q psy4529          89 PGRFVYV   95 (123)
Q Consensus        89 PgrF~Yt   95 (123)
                      . -|.|.
T Consensus        81 ~-~F~~l   86 (87)
T d1cxla1          81 D-NFEVL   86 (87)
T ss_dssp             E-EEEEC
T ss_pred             C-ceEEe
Confidence            3 56664

>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.37  E-value=0.016  Score=35.48  Aligned_cols=60  Identities=20%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             cccceeeecCCCC--CCCeEEEec--cCCc--cccc-------cccccccccccCCCCCCCcceEEEEEeeccc
Q psy4529          23 AFIPVTRASSPTS--TPNSHFINA--NTSG--WNHC-------TLITSHAIRVQTPPRHIPGVVEVTLSYKSKQ   83 (123)
Q Consensus        23 a~~pci~aisp~e--~g~s~iiig--~~t~--~vws-------ELItpHAiRVqTPPrh~PGvVeVTLsyKsKq   83 (123)
                      |-.|.|.+|+|++  +|..+-|.|  |.+.  -|+-       ..++.-.|+|.+|+ +.+|.++|++...++.
T Consensus         1 a~~P~I~si~P~~g~~Gt~VtI~G~~F~~~~~~v~~g~~~~~v~~~s~t~I~c~vP~-~~~g~~~v~V~~~g~~   73 (81)
T d1qhoa1           1 ASAPQIGSVAPNMGIPGNVVTIDGKGFGTTQGTVTFGGVTATVKSWTSNRIEVYVPN-MAAGLTDVKVTAGGVS   73 (81)
T ss_dssp             CSSCEEEEEESSEECTTCEEEEEEECCCSSCCEEEETTEECCEEEECSSEEEEECCS-CCCEEEEEEEEETTEE
T ss_pred             CCCCEEeEEECCCCCCCCEEEEEEECCCCCCeEEEECCEEEEEEEECCCEEEEEeCC-CCCceEEEEEEECCEE
Confidence            4469999999998  444444887  4332  1111       13577899999976 5799999999887653

>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Other IPT/TIG domains
domain: Exocyst complex component Sec5, Ral-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.012  Score=37.04  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             ccceeeecCCCC-CCCeEE-Eec--cCCc--------------cccccccccccccccCCCCCCCcceEEEEEeeccccc
Q psy4529          24 FIPVTRASSPTS-TPNSHF-INA--NTSG--------------WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFC   85 (123)
Q Consensus        24 ~~pci~aisp~e-~g~s~i-iig--~~t~--------------~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfc   85 (123)
                      +-|.|-+|+|++ -|+++| |-|  |...              .+=.+.++.+.|++.+||. .+|..+|.+.-++..+-
T Consensus         3 ~PP~ItsisP~~G~gGT~VTI~G~~f~~~~s~~~~V~v~g~~~~~~~~~~s~~~I~c~tp~~-~~g~~~v~v~~~~g~~~   81 (92)
T d1uadc_           3 QPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQA-KNDKGDIIVTTKSGGRG   81 (92)
T ss_dssp             CCCEEEEEESSEESTTCEEEEEEECSCSSGGGEEEEEETTEECGGGCEEEETTEEEEECCCC-SSSSCCEEEEETTTEEC
T ss_pred             CCCEEeEEeCCCCCCCcEEEEEEECCCCCCCcceEEEEeccceEEEeecCCceEEEEEcCCC-CCcccCEEEEEcCCCeE
Confidence            358999999999 566777 777  3211              1112345788999999776 57899999988876654


Q ss_pred             cCCCceeEEee
Q psy4529          86 KGAPGRFVYVS   96 (123)
Q Consensus        86 kg~PgrF~Yt~   96 (123)
                      .. ...|.|..
T Consensus        82 ts-~~~F~y~~   91 (92)
T d1uadc_          82 TS-TVSFKLLK   91 (92)
T ss_dssp             EE-SSCCEECC
T ss_pred             EE-cCEEEEeC
Confidence            43 45788864

>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.17  E-value=0.031  Score=34.59  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             cceeeecCCCC--CCCeEEEec--cCCcc--ccc-------cccccccccccCCCCCCCcceEEEEEeeccccccC
Q psy4529          25 IPVTRASSPTS--TPNSHFINA--NTSGW--NHC-------TLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG   87 (123)
Q Consensus        25 ~pci~aisp~e--~g~s~iiig--~~t~~--vws-------ELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg   87 (123)
                      .|.|.+|+|++  .|..+.|.|  |.+..  ||-       ...+...|+|.+|+ +.+|.++|++...+.+....
T Consensus         3 tP~I~sisP~~g~~Gt~VtI~G~~F~~~~~~V~ig~~~~~v~~~s~t~I~~~vP~-~~~G~~~V~V~~~~g~~s~~   77 (83)
T d1cyga1           3 TPIIGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAANVVSWSNNQIVVAVPN-VSPGKYNITVQSSSGQTSAA   77 (83)
T ss_dssp             SCEEEEEECSEECTTCEEEEEEECCCSSCCEEEETTEECCEEECCSSEEEEECCS-CCSEEEEEEEECTTSCBCCC
T ss_pred             CCEEEEEECCCCCCCCEEEEEEcccCCCccEEEECCEEEEEEEeCCCEEEEEEeC-CCCccEEEEEEECCCcEEec
Confidence            68999999999  444444777  43321  111       12467889999975 56899999999887766543

>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Thermoanaerobacterium [TaxId: 28895]

Probab=91.47  E-value=0.12  Score=31.78  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             cceeeecCCCC--CCCeEEEec--cCCcc--cc-------ccccccccccccCCCCCCCcceEEEEEeecccc
Q psy4529          25 IPVTRASSPTS--TPNSHFINA--NTSGW--NH-------CTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQF   84 (123)
Q Consensus        25 ~pci~aisp~e--~g~s~iiig--~~t~~--vw-------sELItpHAiRVqTPPrh~PGvVeVTLsyKsKqf   84 (123)
                      .|.|.+|+|++  .|..+.|.|  |++..  |+       -.-.+.--|+|..| .+.+|.++|++.-.+.+.
T Consensus         3 tP~I~sisP~~g~~Gt~VtI~G~~F~~~~~~V~ig~~~~~v~~~s~t~I~~~vP-~~~~g~~~v~V~~~~g~~   74 (83)
T d3bmva1           3 SPLIGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKVKVP-SVTPGKYNISLKTSSGAT   74 (83)
T ss_dssp             CCEEEEEECSEECTTCEEEEEEECCCSSCCEEEETTEECEEEEECSSEEEEECC-CCCSEEEEEEEECTTCCB
T ss_pred             CCEEeEEeCCCCCCCCEEEEEecCCCCCcceEEECCEEEEEEEECCCEEEEEeC-CCCCceEEEEEEeCCCcE
Confidence            68999999999  444444777  43321  10       00235567899996 467999999987665443