Psyllid ID: psy4531

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGSGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLltpfsfvcwfrpaykafkddssfnFMVFFFIFIFQFIVSLIQAigtqgsgt
Flexible Loop (DISEMBL)
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGSGT
Low Complexity Region (SEG)
MRIHAGLMLVNILGSLLLMMHSGEIERvflavfftflltpfSFVCWFRPAYKAFKDDSSfnfmvfffififqfiVSLIQAIGTQGSGT
Disordered region (IsUnstruct)
***HAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIG******
Disordered Region (DISOPRED)
*RIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGS**
Disordered Region (DISEMBL)
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGSGT
Disordered Region (DISPRO)
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGS**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIGTQGSGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q28F21	231	Secretory carrier-associa	yes	N/A	0.886	0.337	0.551	9e-13
Q6P0C7	230	Secretory carrier-associa	yes	N/A	0.965	0.369	0.470	6e-12
Q6GPA8	235	Secretory carrier-associa	N/A	N/A	0.886	0.331	0.525	1e-11
Q6GM42	235	Secretory carrier-associa	N/A	N/A	0.886	0.331	0.525	3e-11
Q9JKV5	230	Secretory carrier-associa	yes	N/A	0.897	0.343	0.531	2e-10
Q9ET20	230	Secretory carrier-associa	yes	N/A	0.897	0.343	0.531	2e-10
Q5R5Z8	235	Secretory carrier-associa	yes	N/A	0.909	0.340	0.5	4e-10
Q9JKE3	235	Secretory carrier-associa	no	N/A	0.909	0.340	0.5	4e-10
Q9JKD3	235	Secretory carrier-associa	no	N/A	0.909	0.340	0.5	4e-10
Q17QF8	235	Secretory carrier-associa	yes	N/A	0.909	0.340	0.5	4e-10

>sp|Q28F21|SCAM5_XENTR Secretory carrier-associated membrane protein 5 OS=Xenopus tropicalis GN=scamp5 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 53/78 (67%)

Query: 10  VNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIF 69
           VN++G L  M+  G      LA+ +  L TP S+VCWFRPAYKAFK DSSFNFM FFF F
Sbjct: 53  VNLIGCLAWMIGGGGAINFGLAILWVILFTPCSYVCWFRPAYKAFKTDSSFNFMAFFFTF 112

Query: 70  IFQFIVSLIQAIGTQGSG 87
             Q ++S+IQA+G  G G
Sbjct: 113 SAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines. Probably acts in cooperation with the SNARE machinery.
Xenopus tropicalis (taxid: 8364)

>sp|Q6P0C7|SCAM5_DANRE Secretory carrier-associated membrane protein 5 OS=Danio rerio GN=scamp5 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query: 3   IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNF 62
           +++  + VN++G L  M   G      +A+ +  L TP S+VCWFRP YKAFK DSSFNF
Sbjct: 43  LNSATLAVNLIGCLAWMCGGGGATNFGMAILWLILFTPCSYVCWFRPIYKAFKSDSSFNF 102

Query: 63  MVFFFIFIFQFIVSLIQAIGTQGSG 87
           M FFF+F+ Q ++S+IQ +G  G G
Sbjct: 103 MAFFFVFMAQVVISIIQTVGIPGWG 127

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines. Probably acts in cooperation with the SNARE machinery.

Danio rerio (taxid: 7955)

>sp|Q6GPA8|SCM5A_XENLA Secretory carrier-associated membrane protein 5A OS=Xenopus laevis GN=scamp5-a PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 51/78 (65%)

Query: 10  VNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIF 69
           VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSFNFM FFF F
Sbjct: 53  VNLIGCLAWLIGGGSATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFNFMAFFFTF 112

Query: 70  IFQFIVSLIQAIGTQGSG 87
             Q ++S+IQA+G  G G
Sbjct: 113 TAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines. Probably acts in cooperation with the SNARE machinery.

Xenopus laevis (taxid: 8355)

>sp|Q6GM42|SCM5B_XENLA Secretory carrier-associated membrane protein 5B OS=Xenopus laevis GN=scamp5-b PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 51/78 (65%)

Query: 10  VNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIF 69
           VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSFNFM FFF F
Sbjct: 53  VNLIGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFNFMAFFFTF 112

Query: 70  IFQFIVSLIQAIGTQGSG 87
             Q ++S+IQA+G  G G
Sbjct: 113 TGQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines. Probably acts in cooperation with the SNARE machinery.

Xenopus laevis (taxid: 8355)

>sp|Q9JKV5|SCAM4_MOUSE Secretory carrier-associated membrane protein 4 OS=Mus musculus GN=Scamp4 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 53/79 (67%)

Query: 10  VNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIF 69
           VN++  L   +  G      LA+ +  L TP S+VCWFRPAYKAF+ DSSFNFM FFFIF
Sbjct: 53  VNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIF 112

Query: 70  IFQFIVSLIQAIGTQGSGT 88
             QF++++IQAIG  G G 
Sbjct: 113 GAQFVLTVIQAIGFSGWGA 131

Probably involved in membrane protein trafficking.

Mus musculus (taxid: 10090)

>sp|Q9ET20|SCAM4_RAT Secretory carrier-associated membrane protein 4 OS=Rattus norvegicus GN=Scamp4 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 53/79 (67%)

Query: 10  VNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIF 69
           VN++  L   +  G      LA+ +  L TP S+VCWFRPAYKAF+ DSSFNFM FFFIF
Sbjct: 53  VNLVACLAWWIAGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIF 112

Query: 70  IFQFIVSLIQAIGTQGSGT 88
             QF++++IQAIG  G G 
Sbjct: 113 GAQFVLTVIQAIGFSGWGA 131

Probably involved in membrane protein trafficking.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5Z8|SCAM5_PONAB Secretory carrier-associated membrane protein 5 OS=Pongo abelii GN=SCAMP5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           + VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSF+FM FFF
Sbjct: 51  LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
            F+ Q ++S+IQA+G  G G
Sbjct: 111 TFMAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery.

Pongo abelii (taxid: 9601)

>sp|Q9JKE3|SCAM5_RAT Secretory carrier-associated membrane protein 5 OS=Rattus norvegicus GN=Scamp5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           + VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSF+FM FFF
Sbjct: 51  LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
            F+ Q ++S+IQA+G  G G
Sbjct: 111 TFMAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery.

Rattus norvegicus (taxid: 10116)

>sp|Q9JKD3|SCAM5_MOUSE Secretory carrier-associated membrane protein 5 OS=Mus musculus GN=Scamp5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           + VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSF+FM FFF
Sbjct: 51  LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
            F+ Q ++S+IQA+G  G G
Sbjct: 111 TFMAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery.

Mus musculus (taxid: 10090)

>sp|Q17QF8|SCAM5_BOVIN Secretory carrier-associated membrane protein 5 OS=Bos taurus GN=SCAMP5 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           + VN++G L  ++  G      LA  +  L TP S+VCWFRP YKAFK DSSF+FM FFF
Sbjct: 51  LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
            F+ Q ++S+IQA+G  G G
Sbjct: 111 TFMAQLVISIIQAVGIPGWG 130

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
194763465	342	GF21035 [Drosophila ananassae] gi|190618	0.909	0.233	0.612	3e-17
195478821	343	scamp [Drosophila yakuba] gi|194188188|g	0.909	0.233	0.587	1e-16
194894595	343	GG19402 [Drosophila erecta] gi|190649741	0.909	0.233	0.587	1e-16
24642168	343	scamp, isoform A [Drosophila melanogaste	0.909	0.233	0.587	2e-16
312373238	356	hypothetical protein AND_17699 [Anophele	0.965	0.238	0.647	3e-16
157103335	354	secretory carrier-associated membrane pr	0.965	0.240	0.611	7e-16
195163840	342	GL14738 [Drosophila persimilis] gi|19410	0.909	0.233	0.587	9e-16
125982871	342	GA21604 [Drosophila pseudoobscura pseudo	0.909	0.233	0.587	1e-15
7021482	343	secretory carrier membrane protein [Dros	0.909	0.233	0.575	1e-15
321470428	345	hypothetical protein DAPPUDRAFT_50141 [D	0.977	0.249	0.488	2e-15

>gi|194763465|ref|XP_001963853.1| GF21035 [Drosophila ananassae] gi|190618778|gb|EDV34302.1| GF21035 [Drosophila ananassae]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 65/80 (81%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           +L N++G L+LM H+GEI   FLA+F+T L +P S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 169 LLANVIGGLILMFHAGEIGTFFLAIFYTLLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 228

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ + S++QA+G Q  G
Sbjct: 229 IYFFQTLYSVVQAVGFQKMG 248

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478821|ref|XP_002100664.1| scamp [Drosophila yakuba] gi|194188188|gb|EDX01772.1| scamp [Drosophila yakuba]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           +L N++G L+L+ H+GE E  FLA+F+T L +P S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 170 LLANVIGGLILLFHAGEFETFFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 229

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ + S++QA+G    G
Sbjct: 230 IYFFQTLYSIVQAVGFNKMG 249

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894595|ref|XP_001978092.1| GG19402 [Drosophila erecta] gi|190649741|gb|EDV47019.1| GG19402 [Drosophila erecta]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           +L N++G L+L+ H+GE E  FLA+F+T L +P S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 170 LLANVIGGLILLFHAGEFETFFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 229

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ + S++QA+G    G
Sbjct: 230 IYFFQTLYSIVQAVGFNKMG 249

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642168|ref|NP_573023.2| scamp, isoform A [Drosophila melanogaster] gi|442616425|ref|NP_001259572.1| scamp, isoform C [Drosophila melanogaster] gi|7595904|gb|AAF64492.1|AF241834_1 secretory carrier membrane protein [Drosophila melanogaster] gi|7293067|gb|AAF48452.1| scamp, isoform A [Drosophila melanogaster] gi|18447616|gb|AAL68369.1| RH68403p [Drosophila melanogaster] gi|220949434|gb|ACL87260.1| Scamp-PA [synthetic construct] gi|440216796|gb|AGB95414.1| scamp, isoform C [Drosophila melanogaster]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           +L N++G L+L+ H+GE E  FLA+F+T L +P S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 170 LLANVIGGLILLFHAGEFETFFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 229

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ + S++QA+G    G
Sbjct: 230 IYFFQTLYSIVQAVGFNKMG 249

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373238|gb|EFR21019.1| hypothetical protein AND_17699 [Anopheles darlingi]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 4   HAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFM 63
           +A +M VNILG L++++HSGE     LAVF+  L TP SF+CW+RPAYKAFK DSSFNFM
Sbjct: 181 YALVMAVNILGGLVILIHSGEFRTFGLAVFYALLFTPASFMCWYRPAYKAFKTDSSFNFM 240

Query: 64  VFFFIFIFQFIVSLIQAIGTQGSGT 88
           VFFFIF FQ +V+ IQ IG  GSGT
Sbjct: 241 VFFFIFSFQALVTAIQTIGFPGSGT 265

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103335|ref|XP_001647933.1| secretory carrier-associated membrane protein (scamp) [Aedes aegypti] gi|108884765|gb|EAT48990.1| AAEL000090-PA [Aedes aegypti]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 4   HAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFM 63
           +A +M+VNILG L+L++H GE     L +F+  L TP SF+CW+RPAYKAFK+DSSFNFM
Sbjct: 173 YALVMVVNILGGLVLLIHDGEFRTFGLGIFYAVLFTPASFLCWYRPAYKAFKNDSSFNFM 232

Query: 64  VFFFIFIFQFIVSLIQAIGTQGSGT 88
           +FFFIF FQ +V++IQ IG  GSGT
Sbjct: 233 MFFFIFFFQTLVTIIQTIGFPGSGT 257

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195163840|ref|XP_002022757.1| GL14738 [Drosophila persimilis] gi|194104780|gb|EDW26823.1| GL14738 [Drosophila persimilis]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           ++ N++G L+L+ HSG+   +FLA+F+T L TP S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 169 LVANVIGGLILLFHSGDFVTLFLALFYTVLFTPASYVCWFRPAYKAFRNDSSFNFMVFFF 228

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ I S++QA+G    G
Sbjct: 229 IYFFQTIYSVVQAVGFNKMG 248

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125982871|ref|XP_001355201.1| GA21604 [Drosophila pseudoobscura pseudoobscura] gi|54643514|gb|EAL32258.1| GA21604 [Drosophila pseudoobscura pseudoobscura]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           ++ N++G L+L+ HSG+   +FLA+F+T L TP S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 169 LVANVIGGLILLFHSGDFVTLFLALFYTVLFTPASYVCWFRPAYKAFRNDSSFNFMVFFF 228

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ I S++QA+G    G
Sbjct: 229 IYFFQTIYSVVQAVGFDKMG 248

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7021482|gb|AAF35367.1|AF224720_1 secretory carrier membrane protein [Drosophila melanogaster]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/80 (57%), Positives = 62/80 (77%)

Query: 8   MLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFF 67
           +L N++G L+   H+GE E  FLA+F+T L +P S+VCWFRPAYKAF++DSSFNFMVFFF
Sbjct: 170 LLANVIGGLIFWFHAGEFETFFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 229

Query: 68  IFIFQFIVSLIQAIGTQGSG 87
           I+ FQ + S++QA+G    G
Sbjct: 230 IYFFQTLYSIVQAVGFNKMG 249

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470428|gb|EFX81404.1| hypothetical protein DAPPUDRAFT_50141 [Daphnia pulex]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 56/86 (65%)

Query: 3   IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNF 62
           +H  + L+N+LG L L +  G      L++ +  L TP S++CWFRP YKAF+ DSSFNF
Sbjct: 160 LHTLMYLLNVLGCLALFIQVGSGAMFGLSILYCILFTPASYLCWFRPVYKAFRSDSSFNF 219

Query: 63  MVFFFIFIFQFIVSLIQAIGTQGSGT 88
           MVFF I+  Q I ++IQAIG    GT
Sbjct: 220 MVFFVIYFGQLIATVIQAIGIPNLGT 245

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0040285	343	Scamp "Scamp" [Drosophila mela	0.909	0.233	0.35	1.1e-09
UNIPROTKB|Q28F21	231	scamp5 "Secretory carrier-asso	0.886	0.337	0.371	2.6e-08
UNIPROTKB|H3BNW6	148	SCAMP5 "Secretory carrier-asso	0.909	0.540	0.337	6.8e-08
UNIPROTKB|Q6GPA8	235	scamp5-a "Secretory carrier-as	0.886	0.331	0.346	8.2e-08
UNIPROTKB|E1C052	210	SCAMP5 "Uncharacterized protei	0.909	0.380	0.337	1.1e-07
ZFIN|ZDB-GENE-030131-3188	230	scamp5 "secretory carrier memb	0.965	0.369	0.317	1.3e-07
UNIPROTKB|F1M882	231	F1M882 "Uncharacterized protei	0.909	0.346	0.337	1.3e-07
UNIPROTKB|Q17QF8	235	SCAMP5 "Secretory carrier-asso	0.909	0.340	0.337	1.4e-07
UNIPROTKB|E2RBG0	235	SCAMP5 "Uncharacterized protei	0.909	0.340	0.337	1.4e-07
UNIPROTKB|Q8TAC9	235	SCAMP5 "Secretory carrier-asso	0.909	0.340	0.337	1.4e-07

FB|FBgn0040285 Scamp "Scamp" [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 28/80 (35%), Positives = 39/80 (48%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             +L N++G L+   H+GE E               S+VCWFRPAYKAF++DSS        
Sbjct:   170 LLANVIGGLIFWFHAGEFETFFLAIFYTMLFSPASYVCWFRPAYKAFRNDSSFNFMVFFF 229

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                     S++QA+G    G
Sbjct:   230 IYFFQTLYSIVQAVGFNKMG 249

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IGI

UNIPROTKB|Q28F21 scamp5 "Secretory carrier-associated membrane protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 129 (50.5 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/78 (37%), Positives = 36/78 (46%)

Query:    10 VNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXXXX 69
             VN++G L  M+  G                  S+VCWFRPAYKAFK DSS          
Sbjct:    53 VNLIGCLAWMIGGGGAINFGLAILWVILFTPCSYVCWFRPAYKAFKTDSSFNFMAFFFTF 112

Query:    70 XXXXXVSLIQAIGTQGSG 87
                  +S+IQA+G  G G
Sbjct:   113 SAQLVISIIQAVGIPGWG 130

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0050715 "positive regulation of cytokine secretion" evidence=ISS

UNIPROTKB|H3BNW6 SCAMP5 "Secretory carrier-associated membrane protein 5" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    51 LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   111 TFMAQLVISIIQAVGIPGWG 130

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6GPA8 scamp5-a "Secretory carrier-associated membrane protein 5A" [Xenopus laevis (taxid:8355)]

 Score = 125 (49.1 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 27/78 (34%), Positives = 35/78 (44%)

Query:    10 VNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXXXX 69
             VN++G L  ++  G                  S+VCWFRP YKAFK DSS          
Sbjct:    53 VNLIGCLAWLIGGGSATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFNFMAFFFTF 112

Query:    70 XXXXXVSLIQAIGTQGSG 87
                  +S+IQA+G  G G
Sbjct:   113 TAQLVISIIQAVGIPGWG 130

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0050715 "positive regulation of cytokine secretion" evidence=ISS

UNIPROTKB|E1C052 SCAMP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    51 LAVNLVGCLAWLIGGGGAVNLGLAILWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   111 TFMAQLVISIIQAVGIPGWG 130

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0045806 "negative regulation of endocytosis" evidence=IEA

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IEA

GO:0050715 "positive regulation of cytokine secretion" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3188 scamp5 "secretory carrier membrane protein 5" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/85 (31%), Positives = 37/85 (43%)

Query:     3 IHAGLMLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXX 62
             +++  + VN++G L  M   G                  S+VCWFRP YKAFK DSS   
Sbjct:    43 LNSATLAVNLIGCLAWMCGGGGATNFGMAILWLILFTPCSYVCWFRPIYKAFKSDSSFNF 102

Query:    63 XXXXXXXXXXXXVSLIQAIGTQGSG 87
                         +S+IQ +G  G G
Sbjct:   103 MAFFFVFMAQVVISIIQTVGIPGWG 127

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0050715 "positive regulation of cytokine secretion" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

UNIPROTKB|F1M882 F1M882 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    48 LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 107

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   108 TFMAQLVISIIQAVGIPGWG 127

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q17QF8 SCAMP5 "Secretory carrier-associated membrane protein 5" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    51 LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   111 TFMAQLVISIIQAVGIPGWG 130

GO:0050715 "positive regulation of cytokine secretion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0045806 "negative regulation of endocytosis" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

UNIPROTKB|E2RBG0 SCAMP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    51 LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   111 TFMAQLVISIIQAVGIPGWG 130

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q8TAC9 SCAMP5 "Secretory carrier-associated membrane protein 5" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query:     8 MLVNILGSLLLMMHSGEIERXXXXXXXXXXXXXXSFVCWFRPAYKAFKDDSSXXXXXXXX 67
             + VN++G L  ++  G                  S+VCWFRP YKAFK DSS        
Sbjct:    51 LAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFF 110

Query:    68 XXXXXXXVSLIQAIGTQGSG 87
                    +S+IQA+G  G G
Sbjct:   111 TFMAQLVISIIQAVGIPGWG 130

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IDA

GO:0045806 "negative regulation of endocytosis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0050715 "positive regulation of cytokine secretion" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ET20	SCAM4_RAT	No assigned EC number	0.5316	0.8977	0.3434	yes	N/A
Q28F21	SCAM5_XENTR	No assigned EC number	0.5512	0.8863	0.3376	yes	N/A
Q9JKV5	SCAM4_MOUSE	No assigned EC number	0.5316	0.8977	0.3434	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
pfam04144	177	pfam04144, SCAMP, SCAMP family	3e-21

>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family

 Score = 81.9 bits (203), Expect = 3e-21
 Identities = 37/85 (43%), Positives = 48/85 (56%)

Query: 4   HAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFM 63
               +  NI+  L L +  G      L++ +  L TP SFVCW+RP YKAF+ DSSFNF 
Sbjct: 44  LVLTLFYNIIACLALFIGGGGGTDFGLSILYFILGTPGSFVCWYRPVYKAFRTDSSFNFF 103

Query: 64  VFFFIFIFQFIVSLIQAIGTQGSGT 88
            FFFIF    +  +IQA+G  G G 
Sbjct: 104 WFFFIFFLHILFCIIQAVGIPGWGL 128

In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG3088|consensus	313		100.0
PF04144	177	SCAMP: SCAMP family; InterPro: IPR007273 In verteb	99.98

>KOG3088|consensus

Probab=100.00  E-value=2.2e-40  Score=254.32  Aligned_cols=86  Identities=42%  Similarity=0.753  Sum_probs=83.9

Q ss_pred             eeehHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhcchhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHhhhhhhcc
Q psy4531           3 IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIG   82 (88)
Q Consensus         3 ~~~~~L~~N~~~~l~~~~~~~~~~~fglsily~ll~~P~Sf~~WYRplY~A~r~dssf~f~~FF~~~~~h~~~~v~~aiG   82 (88)
                      +|++||++|+++|+++|++|+++.+|||||+|+++|+||||+|||||+|||||+||||||++|||+|++|+++||+||||
T Consensus       140 ~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvg  219 (313)
T KOG3088|consen  140 GLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVG  219 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q psy4531          83 TQGSGT   88 (88)
Q Consensus        83 ip~~G~   88 (88)
                      +||||.
T Consensus       220 f~g~~~  225 (313)
T KOG3088|consen  220 FPGWGL  225 (313)
T ss_pred             cCCcch
Confidence            999983

>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail

Probab=99.98  E-value=2.8e-33  Score=200.70  Aligned_cols=86  Identities=43%  Similarity=0.794  Sum_probs=82.0

Q ss_pred             eeehHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhcchhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHhhhhhhcc
Q psy4531           3 IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIG   82 (88)
Q Consensus         3 ~~~~~L~~N~~~~l~~~~~~~~~~~fglsily~ll~~P~Sf~~WYRplY~A~r~dssf~f~~FF~~~~~h~~~~v~~aiG   82 (88)
                      ++++||++|+++|++.+..+++++++++|++|+++++|+||+|||||+|||+|+|||+||++||+++++|++++++|+||
T Consensus        43 ~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG  122 (177)
T PF04144_consen   43 FLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTPASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIG  122 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999766669999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q psy4531          83 TQGSGT   88 (88)
Q Consensus        83 ip~~G~   88 (88)
                      +|++|+
T Consensus       123 ~p~~G~  128 (177)
T PF04144_consen  123 IPGWGS  128 (177)
T ss_pred             cccccH
Confidence            999984

SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00