Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 92
cd05930 445
cd05930, A_NRPS, The adenylation domain of nonribo
3e-29 cd12117 474
cd12117, A_NRPS_Srf_like, The adenylation domain o
4e-29 TIGR01733 409
TIGR01733, AA-adenyl-dom, amino acid adenylation d
3e-27 cd12116 438
cd12116, A_NRPS_Ta1_like, The adenylation domain o
5e-26 cd05918 447
cd05918, A_NRPS_SidN3_like, The adenylation (A) do
1e-25 cd12115 449
cd12115, A_NRPS_Sfm_like, The adenylation domain o
1e-25 PRK10252 1296
PRK10252, entF, enterobactin synthase subunit F; P
2e-23 pfam00501 412
pfam00501, AMP-binding, AMP-binding enzyme
2e-23 cd12114 476
cd12114, A_NRPS_TlmIV_like, The adenylation domain
2e-23 cd05945 447
cd05945, DltA, D-alanine:D-alanyl carrier protein
1e-22 COG1020 642
COG1020, EntF, Non-ribosomal peptide synthetase mo
4e-22 PRK12467 3956
PRK12467, PRK12467, peptide synthase; Provisional
3e-21 PRK12467 3956
PRK12467, PRK12467, peptide synthase; Provisional
1e-20 PRK12467 3956
PRK12467, PRK12467, peptide synthase; Provisional
2e-20 PRK12316 5163
PRK12316, PRK12316, peptide synthase; Provisional
3e-20 PRK12316 5163
PRK12316, PRK12316, peptide synthase; Provisional
7e-20 PRK05691 4334
PRK05691, PRK05691, peptide synthase; Validated
1e-19 PRK12316 5163
PRK12316, PRK12316, peptide synthase; Provisional
4e-19 PRK05691 4334
PRK05691, PRK05691, peptide synthase; Validated
1e-17 PRK12316 5163
PRK12316, PRK12316, peptide synthase; Provisional
2e-17 TIGR03443 1389
TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh
6e-16 PRK05691 4334
PRK05691, PRK05691, peptide synthase; Validated
2e-13 COG0318 534
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/
5e-12 cd05922 350
cd05922, FACL_like_6, Uncharacterized subfamily of
5e-12 cd04433 338
cd04433, AFD_class_I, Adenylate forming domain, Cl
2e-11 cd05919 436
cd05919, BCL_like, Benzoate CoA ligase (BCL) and s
6e-11 TIGR01734 502
TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho
9e-11 PRK08633 1146
PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola
5e-10 PRK04813 503
PRK04813, PRK04813, D-alanine--poly(phosphoribitol
5e-10 cd05959 506
cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
8e-09 cd05935 430
cd05935, LC_FACS_like, Putative long-chain fatty a
2e-08 cd05931 547
cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)
5e-08 PRK06164 540
PRK06164, PRK06164, acyl-CoA synthetase; Validated
7e-08 cd05912 407
cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase
2e-07 COG0365 528
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat
6e-07 TIGR03098 517
TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form
2e-06 PRK07824 358
PRK07824, PRK07824, O-succinylbenzoic acid--CoA li
2e-06 TIGR01923 436
TIGR01923, menE, O-succinylbenzoate-CoA ligase
2e-06 cd05928 530
cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co
3e-06 TIGR03205 541
TIGR03205, pimA, dicarboxylate--CoA ligase PimA
4e-06 cd05909 489
cd05909, AAS_C, C-terminal domain of the acyl-acyl
1e-05 PTZ00237 647
PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi
2e-05 TIGR02262 508
TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil
2e-05 PRK06178 567
PRK06178, PRK06178, acyl-CoA synthetase; Validated
4e-05 PRK07787 471
PRK07787, PRK07787, acyl-CoA synthetase; Validated
4e-05 PRK03640 483
PRK03640, PRK03640, O-succinylbenzoic acid--CoA li
5e-05 PRK09088 488
PRK09088, PRK09088, acyl-CoA synthetase; Validated
5e-05 PLN02387 696
PLN02387, PLN02387, long-chain-fatty-acid-CoA liga
7e-05 COG1022 613
COG1022, FAA1, Long-chain acyl-CoA synthetases (AM
8e-05 PRK07529 632
PRK07529, PRK07529, AMP-binding domain protein; Va
8e-05 cd05926 345
cd05926, FACL_fum10p_like, Subfamily of fatty acid
9e-05 PRK05691 4334
PRK05691, PRK05691, peptide synthase; Validated
1e-04 PRK13295 547
PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig
1e-04 cd05904 504
cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)
2e-04 cd05967 607
cd05967, PrpE, Propionyl-CoA synthetase (PrpE)
2e-04 cd05941 430
cd05941, MCS, Malonyl-CoA synthetase (MCS)
2e-04 cd05944 359
cd05944, FACL_like_4, Uncharacterized subfamily of
3e-04 cd05936 468
cd05936, FC-FACS_FadD_like, Prokaryotic long-chain
4e-04 PLN02574 560
PLN02574, PLN02574, 4-coumarate--CoA ligase-like
4e-04 cd05911 487
cd05911, Firefly_Luc_like, Firefly luciferase of l
4e-04 PRK08314 546
PRK08314, PRK08314, long-chain-fatty-acid--CoA lig
5e-04 cd05972 430
cd05972, MACS_like, Medium-chain acyl-CoA syntheta
5e-04 cd05927 539
cd05927, LC-FACS_euk, Eukaryotic long-chain fatty
5e-04 cd05969 443
cd05969, MACS_like_4, Uncharacterized subfamily of
5e-04 cd05971 439
cd05971, MACS_like_3, Uncharacterized subfamily of
6e-04 cd05906 560
cd05906, A_NRPS_TubE_like, The adenylation domain
0.001 PRK09192 579
PRK09192, PRK09192, acyl-CoA synthetase; Validated
0.001 PRK05605 573
PRK05605, PRK05605, long-chain-fatty-acid--CoA lig
0.001 cd05923 495
cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)
0.002 cd05903 437
cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li
0.003 cd05958 487
cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)
0.003 PLN02614 666
PLN02614, PLN02614, long-chain acyl-CoA synthetase
0.003 cd05973 440
cd05973, MACS_like_2, Uncharacterized subfamily of
0.003 PRK10524 629
PRK10524, prpE, propionyl-CoA synthetase; Provisio
0.004 cd05970 537
cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s
0.004 PRK06710 563
PRK06710, PRK06710, long-chain-fatty-acid--CoA lig
0.004
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)
Back Hide alignment and domain information
Score = 107 bits (270), Expect = 3e-29
Identities = 46/88 (52%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYLNRP+L RF+ P G RLY TGD L DG E
Sbjct: 289 GVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGP---GERLYRTGDLARWLPDGNLEF 345
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRGY IEL IE AL +P
Sbjct: 346 LGRADDQVKIRGYRIELGEIEAALLAHP 373
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)
Back Show alignment and domain information
Score = 107 bits (270), Expect = 4e-29
Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++Y+GG LA+GYLNRP+L RF+ P G RLY TGD DG E
Sbjct: 321 GVPGELYVGGDGLALGYLNRPELTAERFVPDP-FGP---GERLYRTGDLARWRPDGNIEF 376
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ IEL IE AL +P
Sbjct: 377 LGRIDRQVKIRGFRIELGEIEQALLQHP 404
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain
Back Show alignment and domain information
Score = 101 bits (254), Expect = 3e-27
Identities = 47/91 (51%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGGP +A GYLNRP+L RF+ P G RLY TGD L DG E
Sbjct: 317 GVVGELYIGGPGVARGYLNRPELTAERFVPDP--FAGGDGARLYRTGDLVRYLPDGNLEF 374
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRGY IEL IE AL +P R
Sbjct: 375 LGRIDDQVKIRGYRIELGEIEAALLRHPGVR 405
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase
Back Show alignment and domain information
Score = 98.8 bits (247), Expect = 5e-26
Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYL RP+L RF+ P G RLY TGD DG E
Sbjct: 282 GVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDP---GGRLYRTGDLVRWRPDGRLEY 338
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRG+ IEL IE ALR +P
Sbjct: 339 LGRADDQVKIRGFRIELGEIEAALRAHP 366
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)
Back Show alignment and domain information
Score = 97.3 bits (243), Expect = 1e-25
Identities = 44/91 (48%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGGP +A GYLNRP+L +FI P L G R+Y TGD L DG+ E
Sbjct: 283 GAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNP-GGRIYRTGDLVRYLEDGSLEF 341
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG IEL IE LR P
Sbjct: 342 LGRKDDQVKIRGQRIELGEIEAVLRALPGVV 372
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae
Back Show alignment and domain information
Score = 97.4 bits (243), Expect = 1e-25
Identities = 43/88 (48%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++YIGG +A GYL RP+L RF+ P G RLY TGD DG E
Sbjct: 292 GVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSP--GERLYRTGDLVRRRADGQLEY 349
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VK+RG+ IEL IE ALR P
Sbjct: 350 LGRIDDQVKVRGFRIELGEIEAALRSIP 377
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional
Back Show alignment and domain information
Score = 92.0 bits (229), Expect = 2e-23
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G GD+Y+ G LA GYL RPDL RFI+ P G R+Y TGD L DG E
Sbjct: 800 GVAGDLYLTGIQLAQGYLGRPDLTASRFIADP----FAPGERMYRTGDVARWLDDGAVEY 855
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GRSD +KIRG IEL I+ A++ P
Sbjct: 856 LGRSDDQLKIRGQRIELGEIDRAMQALP 883
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme
Back Show alignment and domain information
Score = 91.6 bits (228), Expect = 2e-23
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP +A GYLN P+L RF+ G +Y TGD G DG E+
Sbjct: 326 GEVGELCIRGPGVARGYLNDPELTAERFVE--------DGWGMYRTGDLGRWDEDGYLEI 377
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG IE IE L ++P
Sbjct: 378 LGRKDDQVKIRGERIEPGEIEAVLLEHP 405
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes
Back Show alignment and domain information
Score = 91.9 bits (229), Expect = 2e-23
Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
PG++YIGG +A+GY P+L RFI+ G RLY TGD G DGT E
Sbjct: 324 WVPGELYIGGVGVALGYWGDPELTAERFITHRT------GERLYRTGDLGRYRPDGTIEF 377
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D VKIRGY +EL IE AL +P
Sbjct: 378 LGRADHQVKIRGYRVELGEIEAALARHP 405
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)
Back Show alignment and domain information
Score = 89.6 bits (223), Expect = 1e-22
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP ++ GYLN P+ F G R Y TGD Y DG
Sbjct: 296 GEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE-------GQRWYRTGDLVYLEDDGLLVY 348
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D +K+ GY IEL+ IE ALR P
Sbjct: 349 LGRKDFQIKLHGYRIELEEIEAALRALP 376
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Score = 88.1 bits (218), Expect = 4e-22
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G PG++YI G LA+GYLNRPDL RFI+ +RLY TGD L DG E
Sbjct: 564 LGVPGELYIAGLGLALGYLNRPDLTAERFIA----------LRLYRTGDLARPLADGALE 613
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D+ VKIRG+ IEL IE AL + P
Sbjct: 614 YLGRKDSQVKIRGFRIELGEIEAALAEQP 642
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional
Back Show alignment and domain information
Score = 86.0 bits (213), Expect = 3e-21
Identities = 42/91 (46%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGG LA GY RP L RF+ P G RLY TGD DG E
Sbjct: 852 GVVGELYIGGAGLARGYHRRPALTAERFVPDPF---GADGGRLYRTGDLARYRADGVIEY 908
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L P R
Sbjct: 909 LGRMDHQVKIRGFRIELGEIEARLLAQPGVR 939
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional
Back Show alignment and domain information
Score = 84.4 bits (209), Expect = 1e-20
Identities = 43/88 (48%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GYLNRP L RF++ P T G RLY TGD DG E
Sbjct: 1916 GVAGELYLGGVGLARGYLNRPALTAERFVADPF---GTVGSRLYRTGDLARYRADGVIEY 1972
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ IEL IE LR+
Sbjct: 1973 LGRIDHQVKIRGFRIELGEIEARLREQG 2000
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional
Back Show alignment and domain information
Score = 83.7 bits (207), Expect = 2e-20
Identities = 42/91 (46%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++YIGG LA GY RP L RF++ P G RLY TGD DG E
Sbjct: 3433 GVAGELYIGGVGLARGYHQRPSLTAERFVADP---FSGSGGRLYRTGDLARYRADGVIEY 3489
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L +P R
Sbjct: 3490 LGRIDHQVKIRGFRIELGEIEARLLQHPSVR 3520
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional
Back Show alignment and domain information
Score = 83.1 bits (205), Expect = 3e-20
Identities = 43/91 (47%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GYLNRP L RF+ P G RLY TGD DG E
Sbjct: 2343 GMAGELYLGGEGLARGYLNRPGLTAERFVPDP---FSASGERLYRTGDLARYRADGVVEY 2399
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L+ +P R
Sbjct: 2400 LGRIDHQVKIRGFRIELGEIEARLQAHPAVR 2430
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional
Back Show alignment and domain information
Score = 81.9 bits (202), Expect = 7e-20
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTP--EHLRKTCGVRLYNTGDWGYALGDGT 58
+G G++Y+GG +A GYL RP L RF+ P G RLY TGD DG
Sbjct: 4890 VGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAP-----GGRLYRTGDLARYRADGV 4944
Query: 59 FEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+ +GR D VKIRG+ IEL IE LR++P R
Sbjct: 4945 IDYLGRVDHQVKIRGFRIELGEIEARLREHPAVR 4978
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated
Back Show alignment and domain information
Score = 81.4 bits (201), Expect = 1e-19
Identities = 41/91 (45%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GY +RP L RF++ P G RLY TGD DG E
Sbjct: 2530 GATGELYVGGAGLAQGYHDRPGLTAERFVADP---FAADGGRLYRTGDLVRLRADGLVEY 2586
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRG+ IEL IE L ++P R
Sbjct: 2587 VGRIDHQVKIRGFRIELGEIESRLLEHPAVR 2617
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional
Back Show alignment and domain information
Score = 79.6 bits (196), Expect = 4e-19
Identities = 43/91 (47%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+GG LA GY NRP L RF+ P G RLY TGD DG E
Sbjct: 3387 GALGELYLGGEGLARGYHNRPGLTAERFVPDPF----VPGERLYRTGDLARYRADGVIEY 3442
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
IGR D VKIRG+ IEL IE L ++P R
Sbjct: 3443 IGRVDHQVKIRGFRIELGEIEARLLEHPWVR 3473
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated
Back Show alignment and domain information
Score = 75.6 bits (186), Expect = 1e-17
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGG LA GYL RP L RF+ P G RLY TGD DG E
Sbjct: 1467 GVAGELCIGGAGLARGYLGRPALTAERFVPDPL---GEDGARLYRTGDRARWNADGALEY 1523
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR D VK+RG+ +E + I+ L
Sbjct: 1524 LGRLDQQVKLRGFRVEPEEIQARL 1547
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional
Back Show alignment and domain information
Score = 75.0 bits (184), Expect = 2e-17
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++Y+ G LA GY RP L RF+ +P G R+Y TGD DG E
Sbjct: 849 GVLGELYLAGRGLARGYHGRPGLTAERFVPSP----FVAGERMYRTGDLARYRADGVIEY 904
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
GR D VK+RG IEL IE L ++P R
Sbjct: 905 AGRIDHQVKLRGLRIELGEIEARLLEHPWVR 935
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase
Back Show alignment and domain information
Score = 70.5 bits (173), Expect = 6e-16
Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFIS----TPEHLRKT------------CGVR-- 43
G G+IY+ LA GYL P+LN +F++ P H G R
Sbjct: 619 GEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDR 678
Query: 44 LYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
LY TGD G L DG E GR+D VKIRG+ IEL I+ L +P+ R
Sbjct: 679 LYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVR 727
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated
Back Show alignment and domain information
Score = 63.6 bits (155), Expect = 2e-13
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G++ + G + GY+ P + F+ P G RLY TGD DG E
Sbjct: 4063 LGAVGELCVAGTGVGRGYVGDPLRTALAFVPHP---FGAPGERLYRTGDLARRRSDGVLE 4119
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92
+GR D VKIRGY IEL IE L + R
Sbjct: 4120 YVGRIDHQVKIRGYRIELGEIEARLHEQAEVR 4151
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Score = 59.4 bits (144), Expect = 5e-12
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I++ GP + GY NRP+ F TGD GY DG +
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFD----------EDGWLRTGDLGYVDEDGYLYI 419
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR ++ G I + IE L ++P
Sbjct: 420 VGRLKDLIISGGENIYPEEIEAVLAEHP 447
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 59.2 bits (144), Expect = 5e-12
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ G + GY N P+ R P + LY TGD +G
Sbjct: 195 GEVGELVHRGANVMKGYWNDPEATAERLRPGPL----PGEIVLY-TGDLVRMDEEGYLYF 249
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR D M+K RGY + IE +
Sbjct: 250 VGRKDDMIKTRGYRVSPTEIEEVI 273
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I
Back Show alignment and domain information
Score = 58.1 bits (141), Expect = 2e-11
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY N P Y TGD GY +G +
Sbjct: 193 GEVGELVVRGPWVMKGYWNNPPETTAAATEDG----------WYRTGDLGYLDEEGYLYI 242
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GRS ++K+ G + +E L +P
Sbjct: 243 TGRSKDLIKVGGENVYPAEVESVLLQHP 270
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes
Back Show alignment and domain information
Score = 56.6 bits (137), Expect = 6e-11
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
GT GD+++ GP+LA GY N P+ T LR TGD DG +
Sbjct: 284 GTVGDLWVRGPSLAPGYWNLPE-------KTQRTLRDG----WLRTGDRFSRDADGWYRY 332
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D M+K+ G + +E AL ++P
Sbjct: 333 QGRADDMIKVSGQWVSPLEVEAALGEHP 360
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1
Back Show alignment and domain information
Score = 55.9 bits (135), Expect = 9e-11
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP+++ GYLN P+ T E G Y TGD G + DG
Sbjct: 340 GEKGEIVIVGPSVSKGYLNNPEK-------TAEAFFSHEGQPAYRTGDAGT-ITDGQLFY 391
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY IEL+ IE LR
Sbjct: 392 QGRLDFQIKLHGYRIELEDIEFNLR 416
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Back Show alignment and domain information
Score = 54.2 bits (131), Expect = 5e-10
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G I IGGP + GYL P+ T E ++ G+ Y TGD G+ DG +
Sbjct: 985 GEDGLILIGGPQVMKGYLGDPEK-------TAEVIKDIDGIGWYVTGDKGHLDEDGFLTI 1037
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
R KI G + L A+E L
Sbjct: 1038 TDRYSRFAKIGGEMVPLGAVEEEL 1061
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Back Show alignment and domain information
Score = 53.7 bits (130), Expect = 5e-10
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I GP+++ GYLN P+ F + G Y+TGD GY L DG
Sbjct: 342 GEQGEIVISGPSVSKGYLNNPEKTAEAFFTFD-------GQPAYHTGDAGY-LEDGLLFY 393
Query: 62 IGRSDTMVKIRGYTIELQAIEVALR 86
GR D +K+ GY IEL+ IE LR
Sbjct: 394 QGRIDFQIKLNGYRIELEEIEQNLR 418
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)
Back Show alignment and domain information
Score = 50.4 bits (121), Expect = 8e-09
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++++ G + A GY NR + + F+ TGD Y DG +
Sbjct: 354 GEIGELWVRGDSSAAGYWNRREKTRETFVGE-----------WTRTGDKYYRDEDGYYWY 402
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GRSD M+K+ G + +E AL +P
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVEDALLQHP 430
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase
Back Show alignment and domain information
Score = 49.2 bits (118), Expect = 2e-08
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY NRP+ +T E + G R + TGD GY +G F
Sbjct: 276 GEEGEIVVRGPQVFKGYWNRPE-------ATAESFIELDGKRFFRTGDLGYIDEEGYFFF 328
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ + GY + +E L +P
Sbjct: 329 LDRVKRMINVSGYKVWPAEVEALLYQHP 356
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)
Back Show alignment and domain information
Score = 48.3 bits (116), Expect = 5e-08
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I++ GP++A GY NRP+ F + T TGD G+ L DG V GR
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLA----TDEGGWLRTGDLGF-LHDGELYVTGR 437
Query: 65 SDTMVKIRGYTIELQAIEVALRD 87
++ IRG Q IE +
Sbjct: 438 LKDLIIIRGRNHYPQDIEATVER 460
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 47.8 bits (114), Expect = 7e-08
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I P+L GYL+ PD +T L R TGD GY GDG F
Sbjct: 375 GESGEIEIRAPSLMRGYLDNPD-------ATARALTDDGYFR---TGDLGYTRGDGQFVY 424
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R +++ G+ + IE AL P
Sbjct: 425 QTRMGDSLRLGGFLVNPAEIEHALEALP 452
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)
Back Show alignment and domain information
Score = 46.4 bits (111), Expect = 2e-07
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G+I + GP+L +GYL + L ++TGD GY +G V
Sbjct: 258 PQDGEILVRGPSLFLGYLPQGGLTPPLD-----------EDGWFHTGDLGYLDAEGYLYV 306
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D ++ G I + IE L +P
Sbjct: 307 LGRRDDLIISGGENIYPEEIEAVLLQHP 334
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Score = 45.0 bits (107), Expect = 6e-07
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 5 GDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
G++ + P +A+ Y N P+ R+ R Y TGDW DG F +
Sbjct: 367 GELVVRLPWPGMALTYWNDPE----RYKEAYFG-------RWYRTGDWAERDEDGYFWLH 415
Query: 63 GRSDTMVKIRGYTIELQAIEVALRDYP 89
GRSD ++K+ G I IE L +P
Sbjct: 416 GRSDDVIKVSGKRIGPLEIESVLLAHP 442
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated
Back Show alignment and domain information
Score = 44.0 bits (104), Expect = 2e-06
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR--KTCGVRLYNTGDWGYALGDGTF 59
G G++ G +A+GY N P+ RF P + ++ +GD +G
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW-SGDTVRRDEEGFL 412
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVAL 85
+GR D M+K GY + +E
Sbjct: 413 YFVGRRDEMIKTSGYRVSPTEVEEVA 438
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Score = 43.9 bits (104), Expect = 2e-06
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G I +GGPTLA GY N D + + P R T D G AL DG V+GR
Sbjct: 208 GRIALGGPTLAKGYRNPVDPDPF---AEPGWFR---------TDDLG-ALDDGVLTVLGR 254
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
+D + G T+ Q +E AL +P
Sbjct: 255 ADDAISTGGLTVLPQVVEAALATHP 279
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Score = 44.0 bits (104), Expect = 2e-06
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + G L GYL + +L +NTGD G G+G V+GR
Sbjct: 293 GEIMVKGANLMKGYLYQGELTPAFEQQG-----------WFNTGDIGELDGEGFLYVLGR 341
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
D ++ G I + IE L +P
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHP 366
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)
Back Show alignment and domain information
Score = 42.9 bits (101), Expect = 3e-06
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 2 GTPGDIYIG-GPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
GT GDI I PT ++ PE T Y TGD G DG F
Sbjct: 367 GTEGDIGIRVKPTRPFCLF-------SCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFW 419
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++ GY I +E AL ++P
Sbjct: 420 FVGRADDVINSSGYRIGPFEVESALIEHP 448
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA
Back Show alignment and domain information
Score = 43.0 bits (101), Expect = 4e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ I GP + GY NRP+ + F+ G R + TGD GY DG F +
Sbjct: 391 GEVGELRIRGPNVTRGYWNRPEESAEAFV----------GDR-FLTGDIGYMDTDGYFFL 439
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ G+ + Q IE A+ ++P
Sbjct: 440 VDRKKDMIISGGFNVYPQMIEQAIYEHP 467
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)
Back Show alignment and domain information
Score = 41.1 bits (97), Expect = 1e-05
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + GP + GYLN + + Y+TGD G DG +
Sbjct: 336 GEGGLLLVRGPNVMSGYLNNEEKTS--EVEVLGD-------GWYDTGDIGKIDEDGFLTI 386
Query: 62 IGRSDTMVKIRGYTIELQAIEVAL 85
+GR KI G + L A+E L
Sbjct: 387 VGRLKRFAKIGGEMVSLTAVEELL 410
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 41.3 bits (97), Expect = 2e-05
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
YN+GD G+ +G + ++ RSD +KI G ++L IE ++ +P
Sbjct: 494 YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHP 538
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family
Back Show alignment and domain information
Score = 40.6 bits (95), Expect = 2e-05
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++ I GP+ A Y N + F E R +GD DG++
Sbjct: 354 GEPGELLISGPSSATMYWNNRAKTRDTFQG--EWTR---------SGDKYVRNDDGSYTY 402
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D M+K+ G + IE AL +P
Sbjct: 403 AGRTDDMLKVSGIYVSPFEIESALIQHP 430
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 40.0 bits (94), Expect = 4e-05
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
+G G+I + P+L GY N+P+ E LR +TGD G G
Sbjct: 411 LGAEGEIVVRTPSLLKGYWNKPEATA-------EALRDG----WLHTGDIGKIDEQGFLH 459
Query: 61 VIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR M+K+ G ++ +E L +P
Sbjct: 460 YLGRRKEMLKVNGMSVFPSEVEALLGQHP 488
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 40.0 bits (94), Expect = 4e-05
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVI 62
T G++ + GPTL GYLNRPD F T + + TGD DG ++
Sbjct: 320 TVGELQVRGPTLFDGYLNRPDATAAAF--TADG--------WFRTGDVAVVDPDGMHRIV 369
Query: 63 GRSDT-MVKIRGYTIELQAIEVALRDYP 89
GR T ++K GY I IE AL +P
Sbjct: 370 GRESTDLIKSGGYRIGAGEIETALLGHP 397
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Score = 39.6 bits (93), Expect = 5e-05
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIG 63
G+I + GP + GYLNR D + F + TGD GY +G V+
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDG-----------WFKTGDIGYLDEEGFLYVLD 380
Query: 64 RSDTMVKIRGYTIELQAIEVALRDYP 89
R ++ G I IE L +P
Sbjct: 381 RRSDLIISGGENIYPAEIEEVLLSHP 406
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 39.4 bits (92), Expect = 5e-05
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G PG++ + GP L+ GY RP R G + TGD DG F V
Sbjct: 330 GVPGELLLRGPNLSPGYWRRPQ----------ATARAFTGDGWFRTGDIARRDADGFFWV 379
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M G + IE L D+P
Sbjct: 380 VDRKKDMFISGGENVYPAEIEAVLADHP 407
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein
Back Show alignment and domain information
Score = 39.3 bits (92), Expect = 7e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I IGGP++ +GY + + E G+R + TGD G DG E+I R
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVY-KVDER-----GMRWFYTGDIGQFHPDGCLEIIDR 556
Query: 65 SDTMVKIR-GYTIELQAIEVAL 85
+VK++ G + L +E AL
Sbjct: 557 KKDIVKLQHGEYVSLGKVEAAL 578
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Back Show alignment and domain information
Score = 39.2 bits (92), Expect = 8e-05
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP + GY P+ F T + G + TGD G DG + GR
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAF--TED------G--WFRTGDLGELDEDGYLVITGR 470
Query: 65 S-DTMVKIRGYTIELQAIEVALRDYP 89
+ + G I + IE L P
Sbjct: 471 KKELIKLSNGKNIAPEPIESKLAKSP 496
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated
Back Show alignment and domain information
Score = 39.2 bits (92), Expect = 8e-05
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G + I GP + GYL NK ++ NTGD G DG F +
Sbjct: 415 DEVGVLCIAGPNVFSGYLE-AAHNKGLWL----------EDGWLNTGDLGRIDADGYFWL 463
Query: 62 IGRSDTMVKIR-GYTIELQAIEVALRDYP 89
GR+ ++ IR G+ I+ AIE AL +P
Sbjct: 464 TGRAKDLI-IRGGHNIDPAAIEEALLRHP 491
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis
Back Show alignment and domain information
Score = 38.8 bits (91), Expect = 9e-05
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I GP + GYLN P+ N+ F + TGD GY DG + GR
Sbjct: 198 GEIVIRGPNVTAGYLNNPEANREAFRD-----------GWFRTGDLGYLDEDGYLFLTGR 246
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
++ G I + +E L +P
Sbjct: 247 IKELINRGGEKISPREVEEVLLRHP 271
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated
Back Show alignment and domain information
Score = 38.6 bits (90), Expect = 1e-04
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I+ GP++A GY P+ + F+ EH G TGD G+ L DG V GR
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTFV---EH----DGRTWLRTGDLGF-LRDGELFVTGR 449
Query: 65 SDTMVKIRGYTIELQAIEVAL-RDYPVSR 92
M+ +RG+ + Q IE + R+ V R
Sbjct: 450 LKDMLIVRGHNLYPQDIEKTVEREVEVVR 478
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Score = 38.5 bits (90), Expect = 1e-04
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + G + GYL RP LN ++TGD DG +
Sbjct: 390 GQIGRLQVRGCSNFGGYLKRPQLNGTDADG------------WFDTGDLARIDADGYIRI 437
Query: 62 IGRSDTMVKIRG-YTIELQAIEVALRDYP 89
GRS ++ IRG I + IE L +P
Sbjct: 438 SGRSKDVI-IRGGENIPVVEIEALLYRHP 465
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)
Back Show alignment and domain information
Score = 38.4 bits (90), Expect = 2e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
PG++++ GP + GYLN P+ +T E + K + TGD GY DG +
Sbjct: 355 NQPGELWVRGPQVMKGYLNNPE-------ATAETIDKDGWLH---TGDLGYFDEDGYLFI 404
Query: 62 IGRSDTMVKIRGYTI---ELQAI 81
+ R ++K +G+ + EL+A+
Sbjct: 405 VDRLKELIKYKGFQVAPAELEAL 427
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)
Back Show alignment and domain information
Score = 38.1 bits (89), Expect = 2e-04
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I I P L G L + RF +L K G Y+TGD GY DG V
Sbjct: 425 GELGNIVIKLP-LPPGCLLTLWGDDERFKKL--YLNKFPGY--YDTGDSGYKDEDGYLFV 479
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++ + G+ + +E ++ +P
Sbjct: 480 MGRTDDVINVAGHRLSTGEMEESVLKHP 507
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)
Back Show alignment and domain information
Score = 38.0 bits (89), Expect = 2e-04
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + Y N+P+ F + TGD G DG + +
Sbjct: 283 GEVGEIQVRGPNVFSEYWNKPEATAEAFTEDG----------WFKTGDVGVVDEDGYYRI 332
Query: 62 IGR-SDTMVKIRGYTIELQAIEVALRDYP 89
+GR SD ++K GY + IE AL ++P
Sbjct: 333 LGRKSDDIIKSGGYKVSALEIEEALLEHP 361
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 37.7 bits (88), Expect = 3e-04
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTC-GVRLYNTGDWGYALGDGTFE 60
G G + I GP + GYLN H NTGD G DG
Sbjct: 204 GEVGVLAIRGPNVFPGYLN------------DAHNAGARLEDGWLNTGDLGRIDADGYLW 251
Query: 61 VIGRSDTMVKIR-GYTIELQAIEVALRDYP 89
+ GR+ ++ IR G+ I+ Q IE AL +P
Sbjct: 252 LTGRAKDLI-IRGGHNIDPQMIEEALLRHP 280
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD
Back Show alignment and domain information
Score = 37.1 bits (87), Expect = 4e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY NRP+ T E L L TGD GY DG F +
Sbjct: 319 GEVGELVVRGPQVMKGYWNRPE-------ETAEVLTDGW---LR-TGDIGYMDEDGYFYI 367
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R M+ + G+ + + IE L +P
Sbjct: 368 VDRKKDMIIVGGFNVYPREIEEVLYSHP 395
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like
Back Show alignment and domain information
Score = 37.1 bits (86), Expect = 4e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+++I GP + GYLN P + I LR TGD Y DG +
Sbjct: 399 GNCGELWIQGPGVMKGYLNNPKATQST-IDKDGWLR---------TGDIAYFDEDGYLYI 448
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++K +G+ I +E L +P
Sbjct: 449 VDRLKEIIKYKGFQIAPADLEAVLISHP 476
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)
Back Show alignment and domain information
Score = 36.8 bits (86), Expect = 4e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFE 60
G++ + GP + GYLN P+ K + +TGD GY DG F
Sbjct: 340 PNERGELCVKGPQIMKGYLNNPEATKETI--DED--------GWLHTGDIGYFDEDGNFY 389
Query: 61 VIGRSDTMVKIRGYTI---ELQAI 81
++ R ++K +GY + EL+A+
Sbjct: 390 IVDRKKELIKYKGYQVPPAELEAV 413
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 36.9 bits (86), Expect = 5e-04
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I + GP + GY NRP+ FI G R + TGD G +G F + R
Sbjct: 385 GEIVVHGPQVFKGYWNRPEATAEAFIEID-------GKRFFRTGDLGRMDEEGYFFITDR 437
Query: 65 SDTMVKIRGY 74
M+ G+
Sbjct: 438 LKRMINASGF 447
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)
Back Show alignment and domain information
Score = 36.9 bits (86), Expect = 5e-04
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 2 GTPGDIYI----GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDG 57
G GDI + P L GYL P+ + Y TGD DG
Sbjct: 273 GEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-----------WYLTGDRAIKDEDG 321
Query: 58 TFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
F +GR+D ++K GY I +E AL ++P
Sbjct: 322 YFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Back Show alignment and domain information
Score = 36.8 bits (86), Expect = 5e-04
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I GP + GY P+ F ++TGD G L DGT ++I R
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDED----------GWFHTGDIGEWLPDGTLKIIDR 400
Query: 65 SDTMVK 70
+ K
Sbjct: 401 KKNLFK 406
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)
Back Show alignment and domain information
Score = 36.6 bits (85), Expect = 5e-04
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 2 GTPGDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G G++ + G P++ GYL + F+ Y TGD Y DG F
Sbjct: 288 GQVGELALKPGWPSMFRGYLGNEERYASSFVDG-----------WYLTGDLAYRDEDGYF 336
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR+D ++K G+ + +E AL ++P
Sbjct: 337 WFVGRADDVIKTAGHLVGPFEVESALMEHP 366
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)
Back Show alignment and domain information
Score = 36.6 bits (85), Expect = 6e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 2 GTPGDIYI--GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G G+I + P + +GY N P+ +F TGD G DG
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATAAKFAG-----------DWLLTGDLGRRDADGYL 332
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+D ++K GY I IE L +P
Sbjct: 333 WFKGRADDVIKSSGYRIGPAEIEECLLKHP 362
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents
Back Show alignment and domain information
Score = 35.7 bits (83), Expect = 0.001
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G + + GPT+ GY P+ N F G + TGD G+ L DG + GR
Sbjct: 401 GRLQVRGPTVTSGYYRNPEANAEAFTED--------G--WFRTGDLGF-LHDGRLTITGR 449
Query: 65 SDTMVKIRGYTIELQAIEVALRDYP 89
M+ I G IE A+ P
Sbjct: 450 EKDMIIINGVNYYNHEIEAAVEQVP 474
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated
Back Show alignment and domain information
Score = 35.4 bits (82), Expect = 0.001
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLY-NTGDWGYALGDGTFEVIG 63
G I + GP+L GY + S + +TGD GY L DG + G
Sbjct: 412 GHICVRGPSLMSGYFRDEE-------SQ-----DVLAADGWLDTGDLGY-LLDGYLYITG 458
Query: 64 RSDTMVKIRGYTIELQAIE 82
R+ ++ I G I Q IE
Sbjct: 459 RAKDLIIINGRNIWPQDIE 477
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 35.4 bits (82), Expect = 0.001
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP + GY NRP+ F R TGD DG +
Sbjct: 415 GEEGELLVRGPQVFKGYWNRPEETAKSF--LDGWFR---------TGDVVVMEEDGFIRI 463
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R ++ G+ + +E LR++P
Sbjct: 464 VDRIKELIITGGFNVYPAEVEEVLREHP 491
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)
Back Show alignment and domain information
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 28 RFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87
+++ P+ + Y T D GT ++GR D M+ G I +E L
Sbjct: 361 GYLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGR 420
Query: 88 YP 89
P
Sbjct: 421 AP 422
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)
Back Show alignment and domain information
Score = 34.5 bits (80), Expect = 0.003
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ + GP L +GYL+ PD + T + G + TGD G DG +
Sbjct: 286 GEEGELQVRGPQLFLGYLDPPDNTEA---FTDD------G--WFRTGDLGRLDADGYLRI 334
Query: 62 IGRSDTMVKIR-GYTIELQAIEVALRDYP 89
GR ++ IR G I + IE L +P
Sbjct: 335 TGRKKDII-IRGGENISAREIEDLLLRHP 362
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)
Back Show alignment and domain information
Score = 34.4 bits (79), Expect = 0.003
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + + GPT YL+ E++R V TGD DG F
Sbjct: 337 GEAGRLAVRGPT-GCRYLDDE--------RQQEYVRDGWNV----TGDIFRQDEDGYFHY 383
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ RSD M+ GY I +E AL +P
Sbjct: 384 VARSDDMIVSAGYNIAAPEVEDALLTHP 411
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase
Back Show alignment and domain information
Score = 34.6 bits (79), Expect = 0.003
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGR 64
G+I I G TL GY R DL K I H TGD G +G+ ++I R
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLH-----------TGDVGEWQPNGSMKIIDR 517
Query: 65 SDTMVKI-RGYTIELQAIE 82
+ K+ +G + ++ IE
Sbjct: 518 KKNIFKLSQGEYVAVENIE 536
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)
Back Show alignment and domain information
Score = 34.3 bits (79), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
R Y TGD DG F IGR+D ++ GY I +E AL ++P
Sbjct: 317 RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHP 363
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 34.5 bits (80), Expect = 0.004
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 28 RFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87
RF+ T G ++Y+T DWG DG + ++GR+D ++ + G+ + + IE ++
Sbjct: 461 RFVKT---YWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISS 517
Query: 88 YP 89
+P
Sbjct: 518 HP 519
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like
Back Show alignment and domain information
Score = 34.3 bits (79), Expect = 0.004
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 45 YNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
Y+TGD + DG +GR+D ++K GY I +E AL +P
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHP 458
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 34.2 bits (78), Expect = 0.004
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G+I + GP + GY N+P+ T L+ +TGD GY DG F V
Sbjct: 401 GEIGEIVVKGPQIMKGYWNKPE-------ETAAVLQDG----WLHTGDVGYMDEDGFFYV 449
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDY 88
R M+ G+ + + +E L ++
Sbjct: 450 KDRKKDMIVASGFNVYPREVEEVLYEH 476
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
92
KOG1176|consensus 537
99.95 PLN02614 666
long-chain acyl-CoA synthetase
99.93 COG0318 534
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l
99.92 PLN02861 660
long-chain-fatty-acid-CoA ligase
99.92 PLN02736 651
long-chain acyl-CoA synthetase
99.92 TIGR03443 1389
alpha_am_amid L-aminoadipate-semialdehyde dehydrog
99.91 PTZ00216 700
acyl-CoA synthetase; Provisional
99.91 PRK09274 552
peptide synthase; Provisional
99.91 PRK06334 539
long chain fatty acid--[acyl-carrier-protein] liga
99.91 PLN02387 696
long-chain-fatty-acid-CoA ligase family protein
99.91 PLN02860 563
o-succinylbenzoate-CoA ligase
99.91 PTZ00342 746
acyl-CoA synthetase; Provisional
99.91 PRK07769 631
long-chain-fatty-acid--CoA ligase; Validated
99.91 PTZ00237 647
acetyl-CoA synthetase; Provisional
99.9 PLN02574 560
4-coumarate--CoA ligase-like
99.9 PRK12467 3956
peptide synthase; Provisional
99.9 KOG1177|consensus 596
99.9 COG1022 613
FAA1 Long-chain acyl-CoA synthetases (AMP-forming)
99.9 PRK10252 1296
entF enterobactin synthase subunit F; Provisional
99.89 COG0365 528
Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l
99.89 PRK12316 5163
peptide synthase; Provisional
99.89 TIGR02188 625
Ac_CoA_lig_AcsA acetate--CoA ligase. This model de
99.89 PRK05691 4334
peptide synthase; Validated
99.89 PRK12476 612
putative fatty-acid--CoA ligase; Provisional
99.89 PLN02654 666
acetate-CoA ligase
99.89 PRK00174 637
acetyl-CoA synthetase; Provisional
99.89 PRK06164 540
acyl-CoA synthetase; Validated
99.89 PRK07529 632
AMP-binding domain protein; Validated
99.89 PRK12316 5163
peptide synthase; Provisional
99.89 PLN03102 579
acyl-activating enzyme; Provisional
99.89 PRK05851 525
long-chain-fatty-acid--[acyl-carrier-protein] liga
99.88 PRK05857 540
acyl-CoA synthetase; Validated
99.88 PLN02430 660
long-chain-fatty-acid-CoA ligase
99.88 PRK12467 3956
peptide synthase; Provisional
99.88 TIGR01217 652
ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym
99.88 PRK05677 562
long-chain-fatty-acid--CoA ligase; Validated
99.88 PRK05850 578
acyl-CoA synthetase; Validated
99.88 TIGR02275 527
DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot
99.88 PRK03584 655
acetoacetyl-CoA synthetase; Provisional
99.87 PRK05691 4334
peptide synthase; Validated
99.87 PRK06060 705
acyl-CoA synthetase; Validated
99.87 PRK09088 488
acyl-CoA synthetase; Validated
99.87 PLN02246 537
4-coumarate--CoA ligase
99.87 PRK13390 501
acyl-CoA synthetase; Provisional
99.87 PRK12492 562
long-chain-fatty-acid--CoA ligase; Provisional
99.87 PRK10946 536
entE enterobactin synthase subunit E; Provisional
99.87 PLN03051 499
acyl-activating enzyme; Provisional
99.87 TIGR02316 628
propion_prpE propionate--CoA ligase. This family c
99.87 PRK05852 534
acyl-CoA synthetase; Validated
99.87 PRK04319 570
acetyl-CoA synthetase; Provisional
99.87 PLN02479 567
acetate-CoA ligase
99.86 COG1021 542
EntE Peptide arylation enzymes [Secondary metaboli
99.86 PRK07638 487
acyl-CoA synthetase; Validated
99.86 PRK08633 1146
2-acyl-glycerophospho-ethanolamine acyltransferase
99.86 PRK13388 540
acyl-CoA synthetase; Provisional
99.86 PRK06145 497
acyl-CoA synthetase; Validated
99.86 PRK07445 452
O-succinylbenzoic acid--CoA ligase; Reviewed
99.86 TIGR01734 502
D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig
99.86 PLN02330 546
4-coumarate--CoA ligase-like 1
99.86 TIGR01733 408
AA-adenyl-dom amino acid adenylation domain. This
99.86 PRK08314 546
long-chain-fatty-acid--CoA ligase; Validated
99.86 PRK08008 517
caiC putative crotonobetaine/carnitine-CoA ligase;
99.86 PRK07059 557
Long-chain-fatty-acid--CoA ligase; Validated
99.86 PRK07787 471
acyl-CoA synthetase; Validated
99.86 PRK07788 549
acyl-CoA synthetase; Validated
99.85 PRK07514 504
malonyl-CoA synthase; Validated
99.85 PRK06839 496
acyl-CoA synthetase; Validated
99.85 PRK10524 629
prpE propionyl-CoA synthetase; Provisional
99.85 PRK09192 579
acyl-CoA synthetase; Validated
99.85 PRK08751 560
putative long-chain fatty acyl CoA ligase; Provisi
99.85 PRK07867 529
acyl-CoA synthetase; Validated
99.85 PRK13295 547
cyclohexanecarboxylate-CoA ligase; Reviewed
99.85 PRK08315 559
AMP-binding domain protein; Validated
99.85 TIGR03208 538
cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.
99.85 PRK06155 542
crotonobetaine/carnitine-CoA ligase; Provisional
99.85 PRK08279 600
long-chain-acyl-CoA synthetase; Validated
99.85 PRK07470 528
acyl-CoA synthetase; Validated
99.85 KOG1256|consensus 691
99.85 PRK03640 483
O-succinylbenzoic acid--CoA ligase; Provisional
99.84 PRK12582 624
acyl-CoA synthetase; Provisional
99.84 PRK06178 567
acyl-CoA synthetase; Validated
99.84 PRK08043 718
bifunctional acyl-[acyl carrier protein] synthetas
99.84 TIGR03205 541
pimA dicarboxylate--CoA ligase PimA. PimA, a membe
99.84 PRK12583 558
acyl-CoA synthetase; Provisional
99.84 PRK08162 545
acyl-CoA synthetase; Validated
99.84 PRK05620 576
long-chain-fatty-acid--CoA ligase; Validated
99.84 PRK13391 511
acyl-CoA synthetase; Provisional
99.84 KOG1175|consensus 626
99.84 PRK06710 563
long-chain-fatty-acid--CoA ligase; Validated
99.83 PRK05605 573
long-chain-fatty-acid--CoA ligase; Validated
99.83 PRK06814 1140
acylglycerophosphoethanolamine acyltransferase; Pr
99.83 PRK06087 547
short chain acyl-CoA synthetase; Reviewed
99.83 PRK07786 542
long-chain-fatty-acid--CoA ligase; Validated
99.83 PRK08276 502
long-chain-fatty-acid--CoA ligase; Validated
99.82 PRK07656 513
long-chain-fatty-acid--CoA ligase; Validated
99.82 PRK13382 537
acyl-CoA synthetase; Provisional
99.82 PRK04813 503
D-alanine--poly(phosphoribitol) ligase subunit 1;
99.82 PRK08316 523
acyl-CoA synthetase; Validated
99.82 PRK07768 545
long-chain-fatty-acid--CoA ligase; Validated
99.82 PRK08180 614
feruloyl-CoA synthase; Reviewed
99.82 PRK07824 358
O-succinylbenzoic acid--CoA ligase; Provisional
99.82 TIGR03098 515
ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor
99.82 PRK09029 458
O-succinylbenzoic acid--CoA ligase; Provisional
99.82 PRK08974 560
long-chain-fatty-acid--CoA ligase; Validated
99.82 PRK06188 524
acyl-CoA synthetase; Validated
99.81 TIGR02262 508
benz_CoA_lig benzoate-CoA ligase family. Character
99.81 PRK07008 539
long-chain-fatty-acid--CoA ligase; Validated
99.81 TIGR01923 436
menE O-succinylbenzoate-CoA ligase. This model rep
99.8 PRK12406 509
long-chain-fatty-acid--CoA ligase; Provisional
99.8 PRK07868 994
acyl-CoA synthetase; Validated
99.8 PRK13383 516
acyl-CoA synthetase; Provisional
99.8 KOG1180|consensus 678
99.8 PRK06187 521
long-chain-fatty-acid--CoA ligase; Validated
99.78 PRK06018 542
putative acyl-CoA synthetase; Provisional
99.77 PRK07798 533
acyl-CoA synthetase; Validated
99.74 PLN03052 728
acetate--CoA ligase; Provisional
99.72 PF00501 417
AMP-binding: AMP-binding enzyme; InterPro: IPR0008
99.71 PRK08308 414
acyl-CoA synthetase; Validated
99.65 COG1020 642
EntF Non-ribosomal peptide synthetase modules and
99.61 KOG1179|consensus 649
99.59 TIGR02155 422
PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet
99.54 TIGR02372 386
4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv
99.45 PRK09188 365
serine/threonine protein kinase; Provisional
99.39 TIGR03335 445
F390_ftsA coenzyme F390 synthetase. This enzyme, c
98.93 KOG1178|consensus 1032
98.79 COG1541 438
PaaK Coenzyme F390 synthetase [Coenzyme metabolism
98.58 PTZ00297 1452
pantothenate kinase; Provisional
98.52 KOG3628|consensus 1363
98.51 KOG3628|consensus 1363
97.67 TIGR02304 430
aden_form_hyp probable adenylate-forming enzyme. M
96.3 PF03321 528
GH3: GH3 auxin-responsive promoter; InterPro: IPR0
95.95 PLN02249 597
indole-3-acetic acid-amido synthetase
95.04 PLN02247 606
indole-3-acetic acid-amido synthetase
90.87 PLN02620 612
indole-3-acetic acid-amido synthetase
90.43
>KOG1176|consensus
Back Hide alignment and domain information
Probab=99.95 E-value=2.7e-28 Score=165.95 Aligned_cols=82 Identities=30% Similarity=0.521 Sum_probs=78.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+++.||||++|+.++.|||++|++|++.|.++ +||+|||+|++|+||+|+|.+|++|+||.+|.+|+|.|
T Consensus 376 ~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~----------GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~E 445 (537)
T KOG1176|consen 376 PNQTGEICVRGPQVMKGYLKNPEATKEAFDDD----------GWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAE 445 (537)
T ss_pred CCCceEEEEECcccchhhcCChHHHHhhcccC----------CccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHH
Confidence 57889999999999999999999999999776 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 446 iE~vL~~hP~V~ 457 (537)
T KOG1176|consen 446 IEAVLLTHPDVL 457 (537)
T ss_pred HHHHHHhCCCcc
Confidence 999999999984
>PLN02614 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.93 E-value=3e-26 Score=159.50 Aligned_cols=80 Identities=30% Similarity=0.469 Sum_probs=74.8
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~ 80 (92)
|+.|||+|+||.++.|||++++.+.+.|. + +||+|||+|++|+||+|+|+||++|+||+ +|++|+|.+
T Consensus 466 g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-d----------Gw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~e 534 (666)
T PLN02614 466 TPRGEICIRGKTLFSGYYKREDLTKEVLI-D----------GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVEN 534 (666)
T ss_pred CCCceEEEcCCcccccccCCHHHhhhhhc-c----------CCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHH
Confidence 67899999999999999999998888874 2 69999999999999999999999999997 799999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 535 IE~~l~~~p~V~ 546 (666)
T PLN02614 535 IENIYGEVQAVD 546 (666)
T ss_pred HHHHHhcCCCee
Confidence 999999999884
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.92 E-value=3.7e-25 Score=150.93 Aligned_cols=81 Identities=32% Similarity=0.577 Sum_probs=75.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|++|||+++||+++.|||++|+.+...|... +||+|||++++|++|+++|.||.+|+|+++|.+|+|.||
T Consensus 370 g~vGei~irgp~v~~GY~~~pe~t~~~f~~~----------gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~ei 439 (534)
T COG0318 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDED----------GWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEI 439 (534)
T ss_pred CCceEEEEECchhhhhhcCChHHHHHhhccC----------CeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHH
Confidence 6689999999999999999999888877652 699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|.++.+||.|.
T Consensus 440 E~~l~~~~~V~ 450 (534)
T COG0318 440 EAVLAEHPAVA 450 (534)
T ss_pred HHHHHhCCCcc
Confidence 99999999874
>PLN02861 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=99.92 E-value=2.6e-25 Score=154.64 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=73.9
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAI 81 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~i 81 (92)
..|||+++||.++.|||++++.+.+.|. + +||+|||++++|++|+|+|.||++|+||+ +|++|+|.+|
T Consensus 464 ~~GEi~vrGp~v~~GY~~~pe~T~~~f~-d----------Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eI 532 (660)
T PLN02861 464 PRGEICLRGNTLFSGYHKRQDLTEEVLI-D----------GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENL 532 (660)
T ss_pred CceeEEEcCCcccccccCCHHHHHhhhh-c----------cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHH
Confidence 4799999999999999999999888884 2 69999999999999999999999999997 7999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 533 E~~l~~~p~V~ 543 (660)
T PLN02861 533 ENTYSRCPLIA 543 (660)
T ss_pred HHHHhcCCCee
Confidence 99999999884
>PLN02736 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.92 E-value=3.2e-25 Score=153.79 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=74.1
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAI 81 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~i 81 (92)
..|||+++||.++.|||++++.+.+.|..+ +||+|||++++|+||+|+|+||.+|+||+ +|++|+|.+|
T Consensus 457 ~~GEl~vrgp~v~~GY~~~~~~t~~~~~~d----------gw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eI 526 (651)
T PLN02736 457 PRGEICVRGPIIFKGYYKDEVQTREVIDED----------GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKI 526 (651)
T ss_pred CCceEEecCCccccccccCHHHHHhhhccC----------CCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHH
Confidence 469999999999999999999888877544 69999999999999999999999999998 6999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 527 E~~l~~~p~V~ 537 (651)
T PLN02736 527 ENVYAKCKFVA 537 (651)
T ss_pred HHHHhcCCCee
Confidence 99999999884
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase
Back Show alignment and domain information
Probab=99.91 E-value=1e-24 Score=160.14 Aligned_cols=92 Identities=42% Similarity=0.637 Sum_probs=79.6
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccc------------------cccceeEEEcCCeEEEecCCcEEEe
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR------------------KTCGVRLYNTGDWGYALGDGTFEVI 62 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~tGD~~~~~~~g~l~~~ 62 (92)
+|++|||+|+||.+++|||++|+.+.+.|...++... .....+||+|||++++++||.++|+
T Consensus 618 ~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~ 697 (1389)
T TIGR03443 618 VGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECC 697 (1389)
T ss_pred CCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEe
Confidence 4789999999999999999999999998875432100 0112479999999999999999999
Q ss_pred cccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 63 GRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 63 gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
||.||+||++|++|+|.|||.+|.+||.|+
T Consensus 698 GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~ 727 (1389)
T TIGR03443 698 GRADDQVKIRGFRIELGEIDTHLSQHPLVR 727 (1389)
T ss_pred cccCCEEEeCcEEecHHHHHHHHHhCcchh
Confidence 999999999999999999999999999884
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
>PTZ00216 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=4.2e-25 Score=154.35 Aligned_cols=81 Identities=28% Similarity=0.478 Sum_probs=75.6
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEE-EccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVK-IRGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~-~~G~~v~~~~ 80 (92)
+..|||+|+||+++.|||++++.+.+.|..+ +||+|||++++++||.|+|+||++++|| .+|++|+|.+
T Consensus 505 ~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~d----------Gw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~e 574 (700)
T PTZ00216 505 EPRGEILLRGPFLFKGYYKQEELTREVLDED----------GWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEA 574 (700)
T ss_pred CCCceEEEcCCcccchhcCChhHhhhhcccc----------CCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHH
Confidence 4579999999999999999999999888655 6999999999999999999999999999 7999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 575 IE~~l~~~p~V~ 586 (700)
T PTZ00216 575 LEALYGQNELVV 586 (700)
T ss_pred HHHHHhcCcCcc
Confidence 999999999884
>PRK09274 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=2e-24 Score=146.95 Aligned_cols=85 Identities=27% Similarity=0.429 Sum_probs=75.1
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|++|||+++||.++.|||++++.+...|..+.. +..||+|||++++|++|.|+|+||.+|+||++|.+|+|.+|
T Consensus 385 g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~------g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 458 (552)
T PRK09274 385 GEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ------GDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPC 458 (552)
T ss_pred CCeeEEEEecCcccccccCChHHhhhhhcccCC------CCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHH
Confidence 678999999999999999999877766543221 11499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|+
T Consensus 459 E~~l~~~p~V~ 469 (552)
T PRK09274 459 ERIFNTHPGVK 469 (552)
T ss_pred HHHHHhCcccc
Confidence 99999999884
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.91 E-value=4e-24 Score=145.69 Aligned_cols=83 Identities=30% Similarity=0.397 Sum_probs=72.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+. +... .+.+||+|||++++|++|+++|.||.+++||++|.+|+|.|
T Consensus 377 ~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~~-------~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~e 447 (539)
T PRK06334 377 SGETGLVLTRGTSLFSGYLGEDFGQG--FVEL-------GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEA 447 (539)
T ss_pred CCceEEEEEecCcccccccCCccccc--ceee-------CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHH
Confidence 47889999999999999999887432 2110 12269999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 448 IE~~l~~~~~v~ 459 (539)
T PRK06334 448 LESILMEGFGQN 459 (539)
T ss_pred HHHHHHHccCCc
Confidence 999999999874
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Back Show alignment and domain information
Probab=99.91 E-value=1.4e-24 Score=151.84 Aligned_cols=84 Identities=32% Similarity=0.583 Sum_probs=74.9
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAI 81 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~i 81 (92)
..|||+++||.++.|||++++.+.+.|..+. .+.+||+|||+|++|++|+|+|.||++|+||+ +|++|+|.+|
T Consensus 501 p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~------~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eI 574 (696)
T PLN02387 501 PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDE------RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574 (696)
T ss_pred CCceEEeccCcccchhcCCHHHHhhhhcccc------CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHH
Confidence 4699999999999999999999888874321 12259999999999999999999999999998 6999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 575 E~~l~~~p~V~ 585 (696)
T PLN02387 575 EAALSVSPYVD 585 (696)
T ss_pred HHHHhcCCCee
Confidence 99999999884
>PLN02860 o-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.91 E-value=3.1e-24 Score=146.64 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=75.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++||.++.|||++++.+...+..+ +||+|||+++++++|+++|.||.+|+||++|.+|+|.+
T Consensus 382 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~----------g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~e 451 (563)
T PLN02860 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSND----------GWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEE 451 (563)
T ss_pred CCceeEEEEecCcccccccCCccccchhccCC----------CeEEccceEEEcCCCCEEEeecccceeEECCEEccHHH
Confidence 46889999999999999999998877766544 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 452 IE~~l~~~p~V~ 463 (563)
T PLN02860 452 VEAVLSQHPGVA 463 (563)
T ss_pred HHHHHHhCCCcc
Confidence 999999999884
>PTZ00342 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=1.9e-24 Score=152.12 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=75.0
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAI 81 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~i 81 (92)
..|||+++||.++.|||++|+.|++.|..+ +||+|||++++|++|+|+|+||++++||+ +|++|+|.+|
T Consensus 540 ~~GEl~vrGp~v~~GY~~~pe~T~~~f~~d----------GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eI 609 (746)
T PTZ00342 540 PKGELLIKSDSIFSGYFLEKEQTKNAFTED----------GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDML 609 (746)
T ss_pred CceEEEEecCcccccccCChhhhhhhcCcC----------CcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHH
Confidence 469999999999999999999999888654 69999999999999999999999999996 7999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 610 E~~l~~~p~V~ 620 (746)
T PTZ00342 610 NNLYSQISFIN 620 (746)
T ss_pred HHHHhcCCCcc
Confidence 99999999984
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.91 E-value=1.5e-24 Score=149.80 Aligned_cols=91 Identities=24% Similarity=0.406 Sum_probs=75.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCccc-------ccccceeEEEcCCeEEEecCCcEEEecccCCeEEEcc
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHL-------RKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRG 73 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G 73 (92)
+|++|||+++||+++.|||++++.+.+.|....... ....+.+||+|||+++++ +|+|+|+||.+|+||++|
T Consensus 415 ~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G 493 (631)
T PRK07769 415 DGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDG 493 (631)
T ss_pred CCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECC
Confidence 378899999999999999999998888875321000 001123799999999995 999999999999999999
Q ss_pred EEechHHHHHHHhh-CCCCC
Q psy4547 74 YTIELQAIEVALRD-YPVSR 92 (92)
Q Consensus 74 ~~v~~~~iE~~l~~-~~~V~ 92 (92)
.+|+|.|||++|.+ ||.|+
T Consensus 494 ~~V~p~eIE~~l~~~~p~v~ 513 (631)
T PRK07769 494 RNHYPQDLEYTAQEATKALR 513 (631)
T ss_pred eeeCHHHHHHHHHhcccccc
Confidence 99999999999996 88874
>PTZ00237 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=5.1e-24 Score=147.93 Aligned_cols=83 Identities=27% Similarity=0.515 Sum_probs=73.8
Q ss_pred CCCceeEEEecC---cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEec
Q psy4547 1 MGTPGDIYIGGP---TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIE 77 (92)
Q Consensus 1 ~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~ 77 (92)
+|+.|||++++| +++.|||++++.+.+.|.... +||+|||++++|++|+++|+||+||+||++|++|+
T Consensus 456 ~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~---------g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~ 526 (647)
T PTZ00237 456 VNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFP---------GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQ 526 (647)
T ss_pred CCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCC---------CEEECCcEEEECCCCeEEEEeccCCEEEECCEEeC
Confidence 378899999985 789999999987766553211 69999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCC
Q psy4547 78 LQAIEVALRDYPVSR 92 (92)
Q Consensus 78 ~~~iE~~l~~~~~V~ 92 (92)
|.|||++|.+||.|+
T Consensus 527 p~eIE~~l~~~p~V~ 541 (647)
T PTZ00237 527 LNTIETSILKHPLVL 541 (647)
T ss_pred HHHHHHHHHhCCCce
Confidence 999999999999884
>PLN02574 4-coumarate--CoA ligase-like
Back Show alignment and domain information
Probab=99.90 E-value=8.4e-24 Score=144.42 Aligned_cols=82 Identities=28% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.++.|||++++.+.+.|..+ +||+|||+++++++|.+++.||++|+||++|.+|++.+
T Consensus 398 ~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~----------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~e 467 (560)
T PLN02574 398 PGNCGELWIQGPGVMKGYLNNPKATQSTIDKD----------GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPAD 467 (560)
T ss_pred CCCCeEEEEECcchhhhhcCChhHhhhhccCC----------CCcccceEEEEECCCeEEEEecchhheEECCEEECHHH
Confidence 37889999999999999999998887776543 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 468 iE~~l~~~~~V~ 479 (560)
T PLN02574 468 LEAVLISHPEII 479 (560)
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=6e-24 Score=165.72 Aligned_cols=89 Identities=47% Similarity=0.763 Sum_probs=81.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+|+.+++|||++++.|.+.|..++... .+.+||+|||++++++||.|+|+||+|++||++|.+|+|.|
T Consensus 3432 ~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~---~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~E 3508 (3956)
T PRK12467 3432 VGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSG---SGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 3508 (3956)
T ss_pred CCCCceEEEcchhhhhhccCCcccchhhccCCCCCC---CCceeeccchhheecCCCcEEEeccccceEeeceEeecHHH
Confidence 588999999999999999999999999998876422 24479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||+|+
T Consensus 3509 IE~~l~~~p~V~ 3520 (3956)
T PRK12467 3509 IEARLLQHPSVR 3520 (3956)
T ss_pred HHHHHhhCcccc
Confidence 999999999985
>KOG1177|consensus
Back Show alignment and domain information
Probab=99.90 E-value=9.8e-24 Score=140.46 Aligned_cols=81 Identities=30% Similarity=0.487 Sum_probs=75.7
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|..||||++|++.|.+||++++.+.+....+ +||.|||++.+|++|.++++||.+|+|+.+|++|+|.||
T Consensus 430 ~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~d----------rW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~El 499 (596)
T KOG1177|consen 430 GTKGELLIRGYSTMLGYWGEEEKTKETIGND----------RWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTEL 499 (596)
T ss_pred CCCceEEEEechhheeecCCcccchhhcccc----------cceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHH
Confidence 6789999999999999999998887776655 699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|-+||.|.
T Consensus 500 E~fL~~hp~V~ 510 (596)
T KOG1177|consen 500 EDFLNKHPLVK 510 (596)
T ss_pred HHHHhhCCCee
Confidence 99999999873
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Back Show alignment and domain information
Probab=99.90 E-value=4.9e-24 Score=146.74 Aligned_cols=81 Identities=28% Similarity=0.549 Sum_probs=76.9
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~ 80 (92)
.+.|||+|+||.+|.|||++|+.|++.|..+ +||+|||+|.+|++|+|.++||++++|+. +|.+|.|+.
T Consensus 418 ~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~D----------GWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~ 487 (613)
T COG1022 418 ADDGEILVRGPNVMKGYYKNPEATAEAFTED----------GWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEP 487 (613)
T ss_pred ccCceEEEecchhcchhcCChHHHhhhcccc----------CCcccCceeEEcCCCcEEEeecccceEECCCCcccChHH
Confidence 4579999999999999999999999999876 79999999999999999999999999999 999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.+.++|.|.
T Consensus 488 IE~~l~~~~~I~ 499 (613)
T COG1022 488 IESKLAKSPLIE 499 (613)
T ss_pred HHHHHhcCCCee
Confidence 999999999873
>PRK10252 entF enterobactin synthase subunit F; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=3.3e-23 Score=151.30 Aligned_cols=88 Identities=48% Similarity=0.762 Sum_probs=80.6
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++|+.+++||+++++.+.+.|..+++. .+.+||+|||+++++++|.++|+||+|++||++|++|++.|
T Consensus 799 ~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~----~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~e 874 (1296)
T PRK10252 799 PGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFA----PGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE 874 (1296)
T ss_pred CCCceEEEecccccchhhCCCcccchhhcccCCCC----CCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHH
Confidence 47889999999999999999999999999876542 23479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 875 IE~~l~~~~~v~ 886 (1296)
T PRK10252 875 IDRAMQALPDVE 886 (1296)
T ss_pred HHHHHHhCcccc
Confidence 999999999884
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.89 E-value=1.3e-23 Score=142.83 Aligned_cols=79 Identities=34% Similarity=0.579 Sum_probs=72.1
Q ss_pred CCceeEEEecC--cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 2 GTPGDIYIGGP--TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 2 g~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
|+ |+|+++.| +++++||++++...+.+... ||.|||.+++|+||+++|+||+||+||++|++|+|.
T Consensus 365 ~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-----------~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~ 432 (528)
T COG0365 365 GV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-----------WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPL 432 (528)
T ss_pred Cc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-----------eeecCceeEEccCCCEEEEeeccceEeccCeeccHH
Confidence 56 99999985 89999999998766666442 999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||+|.
T Consensus 433 EvE~~l~~hP~Va 445 (528)
T COG0365 433 EIESVLLAHPAVA 445 (528)
T ss_pred HHHHHHHhCccee
Confidence 9999999999984
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=1.8e-23 Score=164.92 Aligned_cols=89 Identities=48% Similarity=0.803 Sum_probs=81.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||++++|||++++.+.+.|..+++.. .+.+||+|||++++++||.|+|+||+|++||++|++|+|.|
T Consensus 2342 ~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~---~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~e 2418 (5163)
T PRK12316 2342 PGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSA---SGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGE 2418 (5163)
T ss_pred CCCeeEEEecchhhcccccCChhhhhhhccCCCCCC---CCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHH
Confidence 478999999999999999999999999998765422 13479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||+|+
T Consensus 2419 IE~~l~~~~~v~ 2430 (5163)
T PRK12316 2419 IEARLQAHPAVR 2430 (5163)
T ss_pred HHHHHhhCcccc
Confidence 999999999884
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase
Back Show alignment and domain information
Probab=99.89 E-value=3.1e-23 Score=143.11 Aligned_cols=84 Identities=24% Similarity=0.266 Sum_probs=73.8
Q ss_pred CCCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|+.|||++++ |+++.|||++++.+...+.... .+||+|||++++|++|+++|+||+||+||++|++|+|
T Consensus 439 ~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~--------~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p 510 (625)
T TIGR02188 439 PGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPF--------PGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGT 510 (625)
T ss_pred CCCeEEEEEccCCCcccccccCChHHHHHHHhccC--------CCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECH
Confidence 37889999999 6899999999876655553321 1599999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.+||++|.+||.|+
T Consensus 511 ~eIE~~l~~~p~V~ 524 (625)
T TIGR02188 511 AEIESALVSHPAVA 524 (625)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999999874
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.89 E-value=3.6e-23 Score=162.08 Aligned_cols=89 Identities=38% Similarity=0.655 Sum_probs=82.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|.+|||+|+|+.+++|||++++.|++.|..+++.. .+.+||+|||++++++||.+.|+||+|++||++|++|.+.|
T Consensus 4063 ~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~---~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~e 4139 (4334)
T PRK05691 4063 LGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGA---PGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGE 4139 (4334)
T ss_pred CCCceEEEEecccccccccCCcccchhhcccCCCCC---CCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHH
Confidence 478999999999999999999999999998877532 24479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.++|+|+
T Consensus 4140 IE~~l~~~~~v~ 4151 (4334)
T PRK05691 4140 IEARLHEQAEVR 4151 (4334)
T ss_pred HHHHHHhCCCcc
Confidence 999999999884
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=2.3e-23 Score=143.65 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCccc--------ccccceeEEEcCCeEEEecCCcEEEecccCCeEEEc
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHL--------RKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIR 72 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~ 72 (92)
+|+.|||+++||.++.|||++++.+.+.|....... ....+.+||+|||+++++ +|+|+|+||++|+||++
T Consensus 426 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~ 504 (612)
T PRK12476 426 DGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVID 504 (612)
T ss_pred CCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEEC
Confidence 478899999999999999999998888775311000 001123699999999985 99999999999999999
Q ss_pred cEEechHHHHHHHhh-CCCCC
Q psy4547 73 GYTIELQAIEVALRD-YPVSR 92 (92)
Q Consensus 73 G~~v~~~~iE~~l~~-~~~V~ 92 (92)
|.+|+|.|||++|.+ ||.|+
T Consensus 505 G~~I~p~eIE~~l~~~~p~V~ 525 (612)
T PRK12476 505 GRNHYPQDIEATVAEASPMVR 525 (612)
T ss_pred CcccCHHHHHHHHHHhccccc
Confidence 999999999999985 78873
>PLN02654 acetate-CoA ligase
Back Show alignment and domain information
Probab=99.89 E-value=3.3e-23 Score=144.26 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 2 g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
++.|||++++ |+++.+||++++.+...+.... .+||+|||++++|+||+++|+||+||+||++|++|+|.
T Consensus 478 ~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~--------~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~ 549 (666)
T PLN02654 478 ECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPF--------AGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTA 549 (666)
T ss_pred CCceEEEEcCCCchhhhhhcCChHHHHHhhhhcC--------CCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHH
Confidence 4579999998 7899999999987666553321 16999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||.|.
T Consensus 550 EIE~~l~~~p~V~ 562 (666)
T PLN02654 550 EVESALVSHPQCA 562 (666)
T ss_pred HHHHHHHhCCCee
Confidence 9999999999874
>PRK00174 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=5.1e-23 Score=142.36 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=73.4
Q ss_pred CCCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|+.|||++++ |+++.|||++++.+.+.+.... .+||+|||+++++++|+++|+||+||+||++|.+|+|
T Consensus 447 ~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~--------~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p 518 (637)
T PRK00174 447 GGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTF--------KGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 518 (637)
T ss_pred CCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCC--------CCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECH
Confidence 36889999999 6899999999876655443211 1699999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.|||++|.+||.|+
T Consensus 519 ~eIE~~l~~~~~V~ 532 (637)
T PRK00174 519 AEIESALVAHPKVA 532 (637)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999999884
>PRK06164 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.89 E-value=5.8e-23 Score=139.40 Aligned_cols=82 Identities=33% Similarity=0.586 Sum_probs=75.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
.|+.|||+++|+.++.|||++++.+...|..+ +||+|||+++++++|.+++.||.+++||++|.+|+|.+
T Consensus 374 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~----------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~e 443 (540)
T PRK06164 374 DGESGEIEIRAPSLMRGYLDNPDATARALTDD----------GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAE 443 (540)
T ss_pred CCCeeEEEEecccccccccCCchhhhhcccCC----------CceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHH
Confidence 36789999999999999999998888777654 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 444 IE~~l~~~~~v~ 455 (540)
T PRK06164 444 IEHALEALPGVA 455 (540)
T ss_pred HHHHHHhCCCce
Confidence 999999999873
>PRK07529 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.89 E-value=8.1e-23 Score=141.51 Aligned_cols=81 Identities=33% Similarity=0.484 Sum_probs=71.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.++.||++++. +...|... +||+|||+++++++|+++|.||++|+||++|++|+|.+
T Consensus 414 ~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~----------gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~e 482 (632)
T PRK07529 414 VDEVGVLCIAGPNVFSGYLEAAH-NKGLWLED----------GWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAA 482 (632)
T ss_pred CCCceEEEEECCCccccccCCcc-ccccccCC----------CceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHH
Confidence 47889999999999999998654 44444322 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 483 IE~~l~~~p~V~ 494 (632)
T PRK07529 483 IEEALLRHPAVA 494 (632)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=5.9e-23 Score=162.09 Aligned_cols=88 Identities=49% Similarity=0.791 Sum_probs=81.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+|+.+++||+++++.|.+.|..+++ ..+.+||+|||++++++||.|+|+||+|++||++|++|++.|
T Consensus 3386 ~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~----~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~e 3461 (5163)
T PRK12316 3386 VGALGELYLGGEGLARGYHNRPGLTAERFVPDPF----VPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGE 3461 (5163)
T ss_pred CCCCceEEecccccchhcCCChhhchhhCCCCCC----CCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHH
Confidence 4789999999999999999999999999988765 234479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 3462 IE~~l~~~~~V~ 3473 (5163)
T PRK12316 3462 IEARLLEHPWVR 3473 (5163)
T ss_pred HHHHHHhCCCcc
Confidence 999999999884
>PLN03102 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=5.4e-23 Score=141.15 Aligned_cols=79 Identities=33% Similarity=0.482 Sum_probs=73.3
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
+.|||+++||.++.|||++++.+...|.. +||+|||++++|++|+++|.||.+|+||++|.+|+|.+||
T Consensus 391 ~~GEl~v~g~~~~~GY~~~~~~t~~~f~~-----------gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE 459 (579)
T PLN03102 391 TMGEIVIKGSSIMKGYLKNPKATSEAFKH-----------GWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVE 459 (579)
T ss_pred CceEEEEECcchhhhhcCChhhhHhhhcc-----------CceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHH
Confidence 56999999999999999999887776643 5999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.+||.|+
T Consensus 460 ~~l~~~p~V~ 469 (579)
T PLN03102 460 NVLYKYPKVL 469 (579)
T ss_pred HHHHhCCCcc
Confidence 9999999874
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.88 E-value=9.4e-23 Score=138.44 Aligned_cols=75 Identities=29% Similarity=0.514 Sum_probs=67.7
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++||+++.|||++++.+ .. +||+|||+++++ +|.|+|+||+||+||++|++|+|.||
T Consensus 370 g~~GEl~v~g~~~~~GY~~~~~~~-----~~----------~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 370 REIGEIEIRGASMMSGYLGQAPID-----PD----------DWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred CCeEEEEEecCchhhccccCCccC-----CC----------CceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 678999999999999999987521 11 599999999987 79999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|+
T Consensus 434 E~~l~~~p~V~ 444 (525)
T PRK05851 434 ERVAAQVRGVR 444 (525)
T ss_pred HHHHHhCCCcc
Confidence 99999999984
>PRK05857 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.88 E-value=7.5e-23 Score=139.30 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||++++|.++.|||++++.+.+.|.+ +||+|||++++|++|+++|.||.+++||++|.+|+|.+|
T Consensus 372 ~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~-----------g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eI 440 (540)
T PRK05857 372 ASFGTLWIKSPANMLGYWNNPERTAEVLID-----------GWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEV 440 (540)
T ss_pred CCcceEEEeCcchhhhhhCCccchhhhcCC-----------CceeccceEEEcCCceEEEeccccccEecCCEEECHHHH
Confidence 567999999999999999999887777643 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|..||.|+
T Consensus 441 E~~l~~~~~V~ 451 (540)
T PRK05857 441 DRIAEGVSGVR 451 (540)
T ss_pred HHHHHhCCCee
Confidence 99999999874
>PLN02430 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=99.88 E-value=4.7e-23 Score=143.48 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=73.0
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAI 81 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~i 81 (92)
..|||+|+||.++.|||++++.+...|. + +||+|||++++|++|+|+|.||++|+||+ +|++|+|.+|
T Consensus 464 ~~GEi~vrg~~v~~GY~~~~e~t~~~~~-d----------Gw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~I 532 (660)
T PLN02430 464 PRGEICVRGKCLFSGYYKNPELTEEVMK-D----------GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYL 532 (660)
T ss_pred CcceEEecCCCccccccCChHHhhhhhh-c----------cceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHH
Confidence 4699999999999999999998887773 2 69999999999999999999999999997 6999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 533 E~~l~~~p~V~ 543 (660)
T PLN02430 533 ENVYGQNPIVE 543 (660)
T ss_pred HHHHhcCCCee
Confidence 99999999884
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.88 E-value=8.6e-23 Score=159.42 Aligned_cols=89 Identities=48% Similarity=0.799 Sum_probs=81.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++|+++++||+++++.+.+.|..+++.. .+.+||+|||++++++||.|+|+||+|++||++|++|+|.|
T Consensus 1915 ~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~---~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~e 1991 (3956)
T PRK12467 1915 IGVAGELYLGGVGLARGYLNRPALTAERFVADPFGT---VGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991 (3956)
T ss_pred CCCceEEEeccccccccccCChhhhhhhCcCCCCCC---CCccceeccceEEECCCCCEEEecccCceEEeCeEEechHH
Confidence 478999999999999999999999999998766421 23479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 1992 IE~~l~~~p~V~ 2003 (3956)
T PRK12467 1992 IEARLREQGGVR 2003 (3956)
T ss_pred HHHHHHhCCCcc
Confidence 999999999985
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase
Back Show alignment and domain information
Probab=99.88 E-value=1e-22 Score=141.51 Aligned_cols=84 Identities=25% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCCceeEEEecC--cccccccCCCcccc--cccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEe
Q psy4547 1 MGTPGDIYIGGP--TLAIGYLNRPDLNK--MRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTI 76 (92)
Q Consensus 1 ~g~~Gel~v~~~--~~~~gy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v 76 (92)
+|+.|||++++| +++.|||++++.+. +.+... ..+||+|||++++|+||+|+|+||+||+||++|++|
T Consensus 461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~--------~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri 532 (652)
T TIGR01217 461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDT--------YPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRM 532 (652)
T ss_pred CCCccEEEEecCCCccccceeCCCccchhHHhhhcC--------CCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEc
Confidence 378899999996 68999999987543 122111 115899999999999999999999999999999999
Q ss_pred chHHHHHHHhhCCCCC
Q psy4547 77 ELQAIEVALRDYPVSR 92 (92)
Q Consensus 77 ~~~~iE~~l~~~~~V~ 92 (92)
+|.|||++|.+||.|.
T Consensus 533 ~p~EIE~~l~~~p~V~ 548 (652)
T TIGR01217 533 GSAEIYNAVERLDEVR 548 (652)
T ss_pred CHHHHHHHHHhCCCcc
Confidence 9999999999999984
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.88 E-value=1.2e-22 Score=138.67 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=75.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||++++|.++.|||++++.+.+.|..+ +||+|||+++++++|.++|.||++++||++|.+|+|.+
T Consensus 401 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~----------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~e 470 (562)
T PRK05677 401 LGEVGELCVKGPQVMKGYWQRPEATDEILDSD----------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNE 470 (562)
T ss_pred CCCCeEEEEecCccchhhcCCchhhhhccCCC----------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHH
Confidence 36789999999999999999998887777543 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 471 iE~~l~~~~~v~ 482 (562)
T PRK05677 471 LEDVLAALPGVL 482 (562)
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
>PRK05850 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.88 E-value=9.9e-23 Score=139.34 Aligned_cols=90 Identities=24% Similarity=0.423 Sum_probs=75.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccc-cccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR-KTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~-~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
+|+.|||+++||.++.|||++++.+.+.|........ .....+||+|||+++++ +|+++|+||++|+||++|.+|+|.
T Consensus 394 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~ 472 (578)
T PRK05850 394 AGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPD 472 (578)
T ss_pred CCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHH
Confidence 4788999999999999999999988888753211100 11123699999999998 899999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q psy4547 80 AIEVALRDYPVS 91 (92)
Q Consensus 80 ~iE~~l~~~~~V 91 (92)
|||++|.+||.+
T Consensus 473 eIE~~l~~~~~~ 484 (578)
T PRK05850 473 DIEATIQEITGG 484 (578)
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Probab=99.88 E-value=1.5e-22 Score=137.19 Aligned_cols=82 Identities=28% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+...+..+ +||+|||+++++++|++++.||.+++|+++|.+|+|.+
T Consensus 376 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~d----------g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~e 445 (527)
T TIGR02275 376 PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE----------GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEE 445 (527)
T ss_pred CCCceEEEecCCccchhhcCChhHhHhhcCcC----------CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHH
Confidence 37889999999999999999998877766544 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 446 iE~~l~~~~~v~ 457 (527)
T TIGR02275 446 IENLLLAHPAVH 457 (527)
T ss_pred HHHHHHhCCCce
Confidence 999999999874
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=2.9e-22 Score=139.08 Aligned_cols=86 Identities=22% Similarity=0.383 Sum_probs=70.7
Q ss_pred CCCceeEEEecC--cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGGP--TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|+.|||+|++| +++.|||++++.+. +....+.. ..+||+|||++++|+||+++|+||+||+||++|++|+|
T Consensus 460 ~g~~GeL~v~gp~p~~~~gy~~~~~~~~--~~~~~~~~----~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p 533 (655)
T PRK03584 460 VGEVGELVCTKPFPSMPLGFWNDPDGSR--YRDAYFDT----FPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGT 533 (655)
T ss_pred CCCceEEEEccCCCCCcceeeCCCccch--HHHhhhcc----CCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECH
Confidence 378899999995 78999999887432 11111100 01589999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.|||++|.+||.|+
T Consensus 534 ~EIE~~l~~~p~V~ 547 (655)
T PRK03584 534 AEIYRQVEALPEVL 547 (655)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999999884
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.87 E-value=2.5e-22 Score=157.49 Aligned_cols=89 Identities=42% Similarity=0.681 Sum_probs=80.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+|+||.+++||+++++.+.+.|..+++.. .+.+||+|||++++++||.++|+||+|++||++|++|+|.|
T Consensus 1466 ~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~---~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~e 1542 (4334)
T PRK05691 1466 PGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGE---DGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEE 1542 (4334)
T ss_pred CCCceEEEecCcccchhhcCCccccHhhCCCCCCCC---CCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHH
Confidence 478999999999999999999999999998765421 23479999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 1543 IE~~l~~~~~V~ 1554 (4334)
T PRK05691 1543 IQARLLAQPGVA 1554 (4334)
T ss_pred HHHHHHhCCCcc
Confidence 999999999884
>PRK06060 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.87 E-value=2.2e-22 Score=140.57 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=70.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+. .. .+||+|||+++++++|+++|+||+||+||++|++|+|.+
T Consensus 336 ~g~~GEl~i~g~~v~~GY~~~~~~~~---~~----------~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e 402 (705)
T PRK06060 336 PGVEGDLWVRGPAIAKGYWNRPDSPV---AN----------EGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPRE 402 (705)
T ss_pred CCCceEEEEccchhhhhhhCCCcccc---cC----------CCcEECCeeEEECCCceEEEecccCceEEECCEEECHHH
Confidence 47789999999999999999887431 11 169999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 403 IE~~l~~~~~V~ 414 (705)
T PRK06060 403 VERLIIEDEAVA 414 (705)
T ss_pred HHHHHHhCCCee
Confidence 999999999873
>PRK09088 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.87 E-value=3e-22 Score=134.50 Aligned_cols=81 Identities=33% Similarity=0.546 Sum_probs=74.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|++|||++++|.++.||+++++.+...+..+ +||+|||+++++++|.++|.||.+|+|+++|.+|+|.+|
T Consensus 330 g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~----------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~i 399 (488)
T PRK09088 330 GVPGELLLRGPNLSPGYWRRPQATARAFTGD----------GWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEI 399 (488)
T ss_pred CCceEEEEECCccchhhcCChhhhhhhhcCC----------CCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHH
Confidence 6789999999999999999988777666433 699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|+
T Consensus 400 E~~l~~~~~v~ 410 (488)
T PRK09088 400 EAVLADHPGIR 410 (488)
T ss_pred HHHHHhCCCcc
Confidence 99999999874
>PLN02246 4-coumarate--CoA ligase
Back Show alignment and domain information
Probab=99.87 E-value=2.9e-22 Score=136.10 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=74.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+...+... +||+|||+++++++|.++|.||++++||++|.+|+|.+
T Consensus 380 ~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~----------~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~e 449 (537)
T PLN02246 380 RNQPGEICIRGPQIMKGYLNDPEATANTIDKD----------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE 449 (537)
T ss_pred CCCceEEEEECCchhccccCCchhhhhcccCC----------CCeeecceEEEeCCCeEEEEecccceEEECCEEECcHH
Confidence 36789999999999999999998776666433 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 450 IE~~l~~~~~v~ 461 (537)
T PLN02246 450 LEALLISHPSIA 461 (537)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK13390 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=2.8e-22 Score=135.06 Aligned_cols=84 Identities=26% Similarity=0.304 Sum_probs=75.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++++.++.|||++++.+...+.... .+|++|||+++++++|.++|.||.+++||++|.+|+|.+
T Consensus 345 ~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~--------~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~e 416 (501)
T PRK13390 345 AGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAH--------PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQE 416 (501)
T ss_pred CCCceEEEEecCCccccccCChhhhHHhhccCC--------CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHH
Confidence 478999999999999999999988777654321 159999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 417 IE~~l~~~~~v~ 428 (501)
T PRK13390 417 TENALTMHPAVH 428 (501)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=3.4e-22 Score=136.51 Aligned_cols=82 Identities=22% Similarity=0.459 Sum_probs=74.9
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||++++.+.+.|..+ +||+|||+++++++|.++|.||.+++||++|.+|+|.+
T Consensus 409 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~----------g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~e 478 (562)
T PRK12492 409 LGERGELCIKGPQVMKGYWQQPEATAEALDAE----------GWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNE 478 (562)
T ss_pred CCCceEEEEeCCccccccccCchhhhhcccCC----------CceecCcEEEECCCCeEEEecccCCeEEECCEEECHHH
Confidence 36789999999999999999998777766433 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.|.+||.|+
T Consensus 479 IE~~l~~~~~v~ 490 (562)
T PRK12492 479 IEDVVMAHPKVA 490 (562)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK10946 entE enterobactin synthase subunit E; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=3.2e-22 Score=136.01 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=75.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+...|..+ +||+|||++++|++|++++.||.+|+++++|.+|+|.+
T Consensus 377 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d----------~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~e 446 (536)
T PRK10946 377 QGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN----------GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEE 446 (536)
T ss_pred CCCccEEEEecCccchhhcCCcccchhhcccC----------CceecCceEEECCCCcEEEeccccceeecCCEEEcHHH
Confidence 47889999999999999999998877777554 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.|.+||.|+
T Consensus 447 iE~~l~~~~~v~ 458 (536)
T PRK10946 447 IENLLLRHPAVI 458 (536)
T ss_pred HHHHHHhCCCcc
Confidence 999999999874
>PLN03051 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=6.9e-22 Score=133.65 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=68.1
Q ss_pred CceeEEEecCcc--cccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 3 TPGDIYIGGPTL--AIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 3 ~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
++|||+++||.+ +.|||+++. + ..+.+...+. ...+.+||+|||++++|+||+|+|+||.||+||++|++|+|.|
T Consensus 318 ~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~-~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~E 394 (499)
T PLN03051 318 CVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMY-GSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVE 394 (499)
T ss_pred cceEEEEecCcCCCCccccCCcc-c-ceeeecCCcc-ccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHH
Confidence 579999999976 579997642 2 2332211110 0112359999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCCCC
Q psy4547 81 IEVALRD-YPVSR 92 (92)
Q Consensus 81 iE~~l~~-~~~V~ 92 (92)
||++|.+ ||.|.
T Consensus 395 IE~~l~~~~p~V~ 407 (499)
T PLN03051 395 IERACDRAVAGIA 407 (499)
T ss_pred HHHHHHhcCCCcc
Confidence 9999996 99884
>TIGR02316 propion_prpE propionate--CoA ligase
Back Show alignment and domain information
Probab=99.87 E-value=4.6e-22 Score=137.60 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=72.0
Q ss_pred CCCceeEEEecC---cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEec
Q psy4547 1 MGTPGDIYIGGP---TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIE 77 (92)
Q Consensus 1 ~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~ 77 (92)
+|+.|||++++| +.+.+||++++.+.+.+.... ..+||+|||++++|+||+++|+||+||+||++|++|+
T Consensus 434 ~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~ 506 (628)
T TIGR02316 434 PNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHF-------KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLG 506 (628)
T ss_pred CCCcEEEEEecCCCccccccccCChHHHHHhhhhcC-------CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeC
Confidence 367899999998 567899998875554432211 1269999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCC
Q psy4547 78 LQAIEVALRDYPVSR 92 (92)
Q Consensus 78 ~~~iE~~l~~~~~V~ 92 (92)
|.|||++|.+||.|+
T Consensus 507 ~~eIE~~l~~~p~V~ 521 (628)
T TIGR02316 507 TREIEESVSSHPSVA 521 (628)
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999999884
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
>PRK05852 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.87 E-value=3.6e-22 Score=135.59 Aligned_cols=81 Identities=26% Similarity=0.487 Sum_probs=74.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.+++|||++++.+.+.|.+ +||+|||++++|++|++++.||++|+||++|.+|+|.+
T Consensus 377 ~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~-----------g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~ 445 (534)
T PRK05852 377 AGAVGEVWLRGTTVVRGYLGDPTITAANFTD-----------GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPER 445 (534)
T ss_pred CCCceEEEEecCcccchhcCCcccchhhhcC-----------CCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHH
Confidence 4678999999999999999999887776643 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 446 iE~~l~~~~~V~ 457 (534)
T PRK05852 446 VEGVLASHPNVM 457 (534)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK04319 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=4.5e-22 Score=136.13 Aligned_cols=81 Identities=27% Similarity=0.416 Sum_probs=74.2
Q ss_pred CCCceeEEEec--CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|++|||++++ |.++.|||++++.+...|.+ +||+|||+++++++|+++|+||++|+||++|.+|+|
T Consensus 399 ~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~-----------gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p 467 (570)
T PRK04319 399 PNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAG-----------DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGP 467 (570)
T ss_pred CCCceEEEEcCCCChHHhHhcCCHHHhhhhhcC-----------CceEeCcEEEECCCeeEEEEecCCCEEEECCEEECH
Confidence 47889999987 89999999999887777642 599999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.+||++|.+||.|+
T Consensus 468 ~eIE~~l~~~~~V~ 481 (570)
T PRK04319 468 FEVESKLMEHPAVA 481 (570)
T ss_pred HHHHHHHhhCCCee
Confidence 99999999999874
>PLN02479 acetate-CoA ligase
Back Show alignment and domain information
Probab=99.86 E-value=7e-22 Score=135.19 Aligned_cols=79 Identities=28% Similarity=0.453 Sum_probs=73.7
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
++|||+++|+.++.|||++++.+.+.|.. +||+|||+++++++|+++|.||.+++||++|.+|+|.+||
T Consensus 401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~-----------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE 469 (567)
T PLN02479 401 TMGEIVMRGNMVMKGYLKNPKANEEAFAN-----------GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVE 469 (567)
T ss_pred CceEEEEeccchhhhhhcCcccccchhcC-----------CceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHH
Confidence 47999999999999999999988887743 5999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
.+|.+||.|+
T Consensus 470 ~~l~~~~~v~ 479 (567)
T PLN02479 470 NVVYTHPAVL 479 (567)
T ss_pred HHHHhCcccc
Confidence 9999999874
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.86 E-value=2e-22 Score=132.24 Aligned_cols=81 Identities=27% Similarity=0.399 Sum_probs=78.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
||++|+|..+||...+|||+.++-+...|..+ +||+|||+++++++|++.+.||.+|+|+.+|++|..+|
T Consensus 382 pGE~G~LltRGPYTirGYyrap~HNa~aF~a~----------GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeE 451 (542)
T COG1021 382 PGEVGELLTRGPYTIRGYYRAPEHNARAFDAD----------GFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEE 451 (542)
T ss_pred CCCcceeeecCCeeeeeeccCchhhhhccCcC----------CceecCceeEecCCceEEEEeeehhhhccccchhhHHH
Confidence 69999999999999999999999889999777 79999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q psy4547 81 IEVALRDYPVS 91 (92)
Q Consensus 81 iE~~l~~~~~V 91 (92)
||+.|+.||.|
T Consensus 452 vEn~LL~HP~V 462 (542)
T COG1021 452 VENLLLRHPAV 462 (542)
T ss_pred HHHHHhhCchh
Confidence 99999999987
>PRK07638 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=9.1e-22 Score=132.22 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=72.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||+++..+...+. + +||+|||++++|++|++++.||++|+||++|.+|+|.+
T Consensus 330 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~----------g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~e 398 (487)
T PRK07638 330 KGEIGTVYVKSPQFFMGYIIGGVLARELNA-D----------GWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEE 398 (487)
T ss_pred CCCCeEEEEecccceeeecCCHHHHhhhcc-C----------CcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHH
Confidence 478899999999999999998865443322 1 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 399 iE~~l~~~~~v~ 410 (487)
T PRK07638 399 IESVLHEHPAVD 410 (487)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=6.3e-22 Score=143.06 Aligned_cols=83 Identities=33% Similarity=0.448 Sum_probs=74.6
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++||.++.|||++++.+.+.+.+. .+.+||+|||++++|+||++++.||.||+||++|++|+|.|
T Consensus 984 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~-------~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~e 1056 (1146)
T PRK08633 984 PGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI-------DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGA 1056 (1146)
T ss_pred CCCceEEEEcCCCccccccCCccchHHHhhcC-------CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHH
Confidence 47889999999999999999998887766442 13369999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q psy4547 81 IEVALRDYPV 90 (92)
Q Consensus 81 iE~~l~~~~~ 90 (92)
||++|.+||+
T Consensus 1057 iE~~l~~~~~ 1066 (1146)
T PRK08633 1057 VEEELAKALG 1066 (1146)
T ss_pred HHHHHHhccC
Confidence 9999999984
>PRK13388 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.86 E-value=1e-21 Score=133.79 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=73.1
Q ss_pred CCceeEEEe-cCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 2 GTPGDIYIG-GPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
++.|||+++ |+.++.|||++++.+.+.|.. +||+|||+++++++|.+++.||++++||++|.+|+|.+
T Consensus 349 ~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~-----------g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~e 417 (540)
T PRK13388 349 EAIGELVNTAGAGFFEGYYNNPEATAERMRH-----------GMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAP 417 (540)
T ss_pred CcceEEEEecCCcccccccCChHHHHHHhhc-----------CceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHH
Confidence 457999998 999999999999887776632 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 418 IE~~l~~~~~V~ 429 (540)
T PRK13388 418 IERILLRHPAIN 429 (540)
T ss_pred HHHHHHhCCCce
Confidence 999999999874
>PRK06145 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=7e-22 Score=132.85 Aligned_cols=80 Identities=24% Similarity=0.469 Sum_probs=74.3
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++|+.++.|||++++.+...|.+ +||+|||+++++++|++++.||++++||++|.+|+|.+|
T Consensus 343 ~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~-----------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~I 411 (497)
T PRK06145 343 NMKGEICMRGPKVTKGYWKDPEKTAEAFYG-----------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEV 411 (497)
T ss_pred CCceEEEEECcchhhhhcCChHHHHHHHhC-----------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHH
Confidence 678999999999999999999888777743 499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|.++|.|+
T Consensus 412 E~~l~~~~~v~ 422 (497)
T PRK06145 412 ERVIYELPEVA 422 (497)
T ss_pred HHHHHhCCCee
Confidence 99999999874
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.86 E-value=2.5e-21 Score=129.93 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=67.9
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||++++|.++.|||+++. .. .+||+|||++++|+||+++|.||.||+||++|.+|+|.+|
T Consensus 299 g~~Gel~v~g~~~~~gY~~~~~------~~----------~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eI 362 (452)
T PRK07445 299 NQTGNITIQAQSLALGYYPQIL------DS----------QGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEV 362 (452)
T ss_pred CCcceEEEeCCccchhhcCCcc------CC----------CCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHH
Confidence 6889999999999999997432 11 1699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|+
T Consensus 363 E~~l~~~p~V~ 373 (452)
T PRK07445 363 EAAILATGLVQ 373 (452)
T ss_pred HHHHHhCCCcc
Confidence 99999999884
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1
Back Show alignment and domain information
Probab=99.86 E-value=2.4e-21 Score=130.26 Aligned_cols=84 Identities=38% Similarity=0.589 Sum_probs=74.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.||+++++.+...|... .+.+||+|||+++++++ ++++.||.+|+|+++|.+|+|.+
T Consensus 339 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~ 410 (502)
T TIGR01734 339 EGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSH-------EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELED 410 (502)
T ss_pred CCCeeEEEEccccccccccCCcccchHhheeC-------CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHH
Confidence 36789999999999999999988777666432 13369999999999987 99999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.|.+||.|+
T Consensus 411 IE~~l~~~~~v~ 422 (502)
T TIGR01734 411 IEFNLRQSSYIE 422 (502)
T ss_pred HHHHHHcCCCcc
Confidence 999999999874
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
>PLN02330 4-coumarate--CoA ligase-like 1
Back Show alignment and domain information
Probab=99.86 E-value=5.9e-22 Score=134.91 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=74.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.||+++++.+...+... +||+|||+++++++|.++|.||.+++|+++|.+|+|.+
T Consensus 385 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~----------g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~ 454 (546)
T PLN02330 385 KNTPGELCVRSQCVMQGYYNNKEETDRTIDED----------GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE 454 (546)
T ss_pred CCCceEEEEecchhhhhhccCccchhhhccCC----------CceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHH
Confidence 37789999999999999999988776655333 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 455 iE~~l~~~~~v~ 466 (546)
T PLN02330 455 LEAILLTHPSVE 466 (546)
T ss_pred HHHHHHhCCchh
Confidence 999999999874
>TIGR01733 AA-adenyl-dom amino acid adenylation domain
Back Show alignment and domain information
Probab=99.86 E-value=3e-21 Score=126.75 Aligned_cols=89 Identities=53% Similarity=0.844 Sum_probs=77.0
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.+|+++++.+...|....+.... +..||+|||+++++++|.+++.||.+|+++++|.+|+|.+|
T Consensus 316 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~--~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~i 393 (408)
T TIGR01733 316 GVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGD--GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEI 393 (408)
T ss_pred CCceEEEecCccccccccCChhhhhcceeeCCCCCCC--CceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHH
Confidence 6789999999999999999998888777654332111 12499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|..||.|+
T Consensus 394 e~~l~~~~~v~ 404 (408)
T TIGR01733 394 EAALLRHPGVR 404 (408)
T ss_pred HHHHhcCcchh
Confidence 99999999874
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=1.5e-21 Score=132.63 Aligned_cols=84 Identities=31% Similarity=0.549 Sum_probs=74.9
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.||+++++.+.+.|... .+.+||+|||+++++++|.+++.||++|+|+++|.+|+|.+|
T Consensus 382 g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~-------~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eI 454 (546)
T PRK08314 382 GEVGEIVVHGPQVFKGYWNRPEATAEAFIEI-------DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEV 454 (546)
T ss_pred CCceEEEEECCchhccccCChhHhhhhhhhc-------CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHH
Confidence 6789999999999999999988777766532 122599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 455 E~~i~~~~~v~ 465 (546)
T PRK08314 455 ENLLYKHPAIQ 465 (546)
T ss_pred HHHHHhCcchh
Confidence 99999999873
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=1.3e-21 Score=132.18 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=74.7
Q ss_pred CCCceeEEEec---CcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEec
Q psy4547 1 MGTPGDIYIGG---PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIE 77 (92)
Q Consensus 1 ~g~~Gel~v~~---~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~ 77 (92)
+|+.|||++++ +.++.|||++++.+.+.|..+ +||+|||+++++++|.++++||.+++||++|.+|+
T Consensus 363 ~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~----------g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~ 432 (517)
T PRK08008 363 AGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEAD----------GWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVS 432 (517)
T ss_pred CCCcceEEEeCCCCcchhhhHhCChHHHhhcccCC----------CCeeccceEEECCCCcEEEeecccceEEeCCEEEC
Confidence 36789999997 689999999999887777544 69999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCC
Q psy4547 78 LQAIEVALRDYPVSR 92 (92)
Q Consensus 78 ~~~iE~~l~~~~~V~ 92 (92)
|.+||++|.+||.|+
T Consensus 433 p~~iE~~l~~~~~v~ 447 (517)
T PRK08008 433 CVELENIIATHPKIQ 447 (517)
T ss_pred HHHHHHHHHhCCcee
Confidence 999999999999874
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=1.5e-21 Score=133.15 Aligned_cols=82 Identities=29% Similarity=0.553 Sum_probs=75.0
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||++++.+...|..+ +||+|||+++++++|.+++.||++++++++|.+|+|.+
T Consensus 403 ~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~----------g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~ 472 (557)
T PRK07059 403 LGEPGEICIRGPQVMAGYWNRPDETAKVMTAD----------GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNE 472 (557)
T ss_pred CCCceEEEEeCCccchhhhcCHHHHhhhcccC----------CceecCcEEEEcCCCcEEEecccccceEECCEEEcHHH
Confidence 36789999999999999999988777666544 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 473 iE~~l~~~~~V~ 484 (557)
T PRK07059 473 IEEVVASHPGVL 484 (557)
T ss_pred HHHHHHhCCcee
Confidence 999999999874
>PRK07787 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.86 E-value=2.4e-21 Score=129.90 Aligned_cols=79 Identities=38% Similarity=0.618 Sum_probs=73.0
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEeccc-CCeEEEccEEechHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRS-DTMVKIRGYTIELQAIE 82 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~-~~~i~~~G~~v~~~~iE 82 (92)
+|||+++|+.++.||+++++.+.+.|..+ +||+|||+++++++|.+++.||. +++++.+|.+|+|.+||
T Consensus 321 ~Gei~v~g~~~~~gy~~~~~~t~~~~~~~----------~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE 390 (471)
T PRK07787 321 VGELQVRGPTLFDGYLNRPDATAAAFTAD----------GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIE 390 (471)
T ss_pred ceEEEEECcccchhhcCChhhchhcccCC----------CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHH
Confidence 79999999999999999998887777544 59999999999999999999996 89999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.++|.|+
T Consensus 391 ~~l~~~~~v~ 400 (471)
T PRK07787 391 TALLGHPGVR 400 (471)
T ss_pred HHHHhCCCcc
Confidence 9999999874
>PRK07788 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=3e-21 Score=131.43 Aligned_cols=78 Identities=31% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++++.++.||++++.. ... .+||+|||+++++++|.++|.||+||+||++|.+|+|.+
T Consensus 399 ~g~~Gel~v~g~~~~~gY~~~~~~---~~~-----------~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~e 464 (549)
T PRK07788 399 RGVVGRIFVGNGFPFEGYTDGRDK---QII-----------DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAE 464 (549)
T ss_pred CCCeEEEEEeCCCccccccCCCcc---ccc-----------CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHH
Confidence 378899999999999999987753 111 159999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 465 IE~~l~~~~~V~ 476 (549)
T PRK07788 465 VEDLLAGHPDVV 476 (549)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK07514 malonyl-CoA synthase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=2.5e-21 Score=130.27 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.8
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.||+++++.+.+.|... +||+|||+++++++|.+++.||++++||++|.+|+|.+|
T Consensus 346 g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~----------~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~I 415 (504)
T PRK07514 346 GEIGMIEVKGPNVFKGYWRMPEKTAEEFRAD----------GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEV 415 (504)
T ss_pred CCceEEEEecCCccccccCCchhhhhhcccC----------CCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHH
Confidence 6789999999999999999998887777544 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+++.|+
T Consensus 416 E~~l~~~~~v~ 426 (504)
T PRK07514 416 EGEIDELPGVV 426 (504)
T ss_pred HHHHHhCCCee
Confidence 99999999763
>PRK06839 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=1.9e-21 Score=130.52 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=73.4
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||++++.+...+.+ +||+|||+++++++|.+++.||.+|+|+.+|.+|+|.+
T Consensus 340 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~ 408 (496)
T PRK06839 340 VGEVGELLIRGPNVMKEYWNRPDATEETIQD-----------GWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLE 408 (496)
T ss_pred CCCceEEEEECCCcchhhcCChHHHHHHHcC-----------CCeeecceEEEcCCCcEEEeccccceEEECCEEECHHH
Confidence 3788999999999999999998876655532 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.++|.|.
T Consensus 409 iE~~l~~~~~v~ 420 (496)
T PRK06839 409 VEQVINKLSDVY 420 (496)
T ss_pred HHHHHHhCCCee
Confidence 999999999873
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.85 E-value=2.5e-21 Score=133.78 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=72.2
Q ss_pred CCCceeEEEecC---cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEec
Q psy4547 1 MGTPGDIYIGGP---TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIE 77 (92)
Q Consensus 1 ~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~ 77 (92)
+|+.|||++++| +++.+||++++...+.+.... ..+||+|||+++++++|+++|+||+||+||++|++|+
T Consensus 435 ~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~ 507 (629)
T PRK10524 435 PNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLF-------GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLG 507 (629)
T ss_pred CCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccC-------CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeC
Confidence 478899999997 578899998875544432211 1269999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCC
Q psy4547 78 LQAIEVALRDYPVSR 92 (92)
Q Consensus 78 ~~~iE~~l~~~~~V~ 92 (92)
|.|||++|.+||.|+
T Consensus 508 p~eIE~~l~~~p~V~ 522 (629)
T PRK10524 508 TREIEESISSHPAVA 522 (629)
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999999884
>PRK09192 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=2.9e-21 Score=132.42 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=70.1
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++|+.++.|||++ +.+...+..+ +||+|||++++ ++|+++|+||.+|+||++|.+|+|.+|
T Consensus 409 g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~d----------gw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eI 476 (579)
T PRK09192 409 RVVGHICVRGPSLMSGYFRD-EESQDVLAAD----------GWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDI 476 (579)
T ss_pred CCEEEEEecCCchhhhhcCC-ccccccccCC----------ceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHH
Confidence 56799999999999999998 4444444333 69999999999 999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|++||.|.
T Consensus 477 E~~l~~~p~V~ 487 (579)
T PRK09192 477 EWIAEQEPELR 487 (579)
T ss_pred HHHHHhcCCcc
Confidence 99999999873
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.85 E-value=2.4e-21 Score=132.12 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=74.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.|||++++.+.+.|..+ +||+|||+++++++|++++.||.+|+|+++|.+|+|.+|
T Consensus 406 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~----------g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~ei 475 (560)
T PRK08751 406 GEIGELCIKGPQVMKGYWKRPEETAKVMDAD----------GWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEI 475 (560)
T ss_pred CCceEEEEecCccchhhcCChhhhhhccccC----------CCccccceEEEcCCceEEEEeechhheeECCEEEcHHHH
Confidence 6789999999999999999998777666433 699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|..||.|+
T Consensus 476 E~~l~~~~~v~ 486 (560)
T PRK08751 476 EDVIAMMPGVL 486 (560)
T ss_pred HHHHHhCcCee
Confidence 99999999873
>PRK07867 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=4.5e-21 Score=130.52 Aligned_cols=78 Identities=28% Similarity=0.455 Sum_probs=72.2
Q ss_pred ceeEEE-ecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 4 PGDIYI-GGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 4 ~Gel~v-~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
.|||++ +++.++.|||++++.+...|.. +||+|||+++++++|.++|.||++|+|+++|.+|+|.+||
T Consensus 352 ~Gel~i~~g~~~~~gy~~~~~~~~~~~~~-----------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE 420 (529)
T PRK07867 352 IGELVNTAGPGGFEGYYNDPEADAERMRG-----------GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIE 420 (529)
T ss_pred ceEEEEecCCcccccccCChHhhhhhhcC-----------CeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHH
Confidence 799998 9999999999999877766632 5999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.+||.|.
T Consensus 421 ~~l~~~p~V~ 430 (529)
T PRK07867 421 RILLRYPDAT 430 (529)
T ss_pred HHHHhCCCee
Confidence 9999999874
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.85 E-value=4.8e-21 Score=130.50 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=72.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.||+++++.+... .+ +||+|||+++++++|.+++.||.+++||++|.+|+|.+
T Consensus 389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~----------g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~ 456 (547)
T PRK13295 389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--AD----------GWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVE 456 (547)
T ss_pred CCCCCeEEEEcCcccccccCCccccccC--CC----------CCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHH
Confidence 3678999999999999999998766543 11 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+|+.|+
T Consensus 457 IE~~l~~~~~v~ 468 (547)
T PRK13295 457 IEALLYRHPAIA 468 (547)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK08315 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.85 E-value=3.1e-21 Score=131.32 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=74.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
.|+.|||+++++.++.|||+++..+...+... +||+|||+++++++|.++|+||.+++++++|.+|++.+
T Consensus 395 ~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~----------~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~e 464 (559)
T PRK08315 395 RGEQGELCTRGYSVMKGYWNDPEKTAEAIDAD----------GWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPRE 464 (559)
T ss_pred CCCceEEEEECchhhhhhcCChhHHhhcCCCC----------CCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHH
Confidence 36789999999999999999988776665333 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.++|.|.
T Consensus 465 IE~~l~~~~~v~ 476 (559)
T PRK08315 465 IEEFLYTHPKIQ 476 (559)
T ss_pred HHHHHHhCCCce
Confidence 999999999763
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase
Back Show alignment and domain information
Probab=99.85 E-value=5.4e-21 Score=129.94 Aligned_cols=80 Identities=29% Similarity=0.446 Sum_probs=71.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||++++.+. +. ..+||+|||+++++++|.++++||.+++|+++|.+|+|.+
T Consensus 387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~----------~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~e 454 (538)
T TIGR03208 387 QGETGRLLVRGCSNFGGYLKRPHLNS--TD----------AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVE 454 (538)
T ss_pred CCCCcEEEEecCcccccccCCccccc--cc----------CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHH
Confidence 36789999999999999999887543 11 1269999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 455 IE~~l~~~~~v~ 466 (538)
T TIGR03208 455 IENLLYQHPAVA 466 (538)
T ss_pred HHHHHhcCccee
Confidence 999999999874
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.85 E-value=3.8e-21 Score=131.12 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=72.9
Q ss_pred CCceeEEEecC---cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 2 GTPGDIYIGGP---TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 2 g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
|+.|||+++++ +++.||+++++.+...|.+ +||+|||+++++++|.++|.||.+|+|+++|.+|+|
T Consensus 367 g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~-----------~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p 435 (542)
T PRK06155 367 GEPGELLLRADEPFAFATGYFGMPEKTVEAWRN-----------LWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISS 435 (542)
T ss_pred CCceEEEEecCCccccchhhcCCHHHHHHhhcC-----------CcEeccceEEEcCCceEEEEecCCCEEEeCCEEECH
Confidence 67899999998 6999999988877666632 599999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.+||++|.+||.|+
T Consensus 436 ~eIE~~l~~~~~V~ 449 (542)
T PRK06155 436 FEVEQVLLSHPAVA 449 (542)
T ss_pred HHHHHHHHhCCCee
Confidence 99999999999874
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=3.9e-21 Score=132.15 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCCceeEE--EecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIY--IGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~--v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|+.|||+ ++++.++.|| +++..+...|....+ ..+.+||+|||+++++++|.+++.||.+|+||++|.+|+|
T Consensus 400 ~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~----~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p 474 (600)
T PRK08279 400 PGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVF----KKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVAT 474 (600)
T ss_pred CCCceeEEEEecCccccccc-CCchhhHHHHhhccc----CCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCH
Confidence 36789998 7789999999 777777766654321 1123699999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.|||++|.+||.|.
T Consensus 475 ~eIE~~l~~~p~V~ 488 (600)
T PRK08279 475 TEVENALSGFPGVE 488 (600)
T ss_pred HHHHHHHhcCCCcc
Confidence 99999999999874
>PRK07470 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.85 E-value=3.6e-21 Score=130.37 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=73.7
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.|||++++.+...|.+ +||+|||+++++++|++++.||.|++||++|.+|+|.+
T Consensus 363 ~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~-----------~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~ 431 (528)
T PRK07470 363 PGETGEICVIGPAVFAGYYNNPEANAKAFRD-----------GWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPRE 431 (528)
T ss_pred CCCceEEEEeCCccchhhcCCHHHHHhhhcC-----------CcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHH
Confidence 3678999999999999999998877666532 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.++|.|+
T Consensus 432 IE~~l~~~~~v~ 443 (528)
T PRK07470 432 IEEKLLTHPAVS 443 (528)
T ss_pred HHHHHHhCCCce
Confidence 999999999874
>KOG1256|consensus
Back Show alignment and domain information
Probab=99.85 E-value=1.4e-21 Score=134.82 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.1
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~ 80 (92)
|..||||++|+.++.||+++|+.|.+.+..+ +|++|||+|+++++|.|.+.||.++++|+ .|++|.|..
T Consensus 496 ~~~GEIcirG~~Vf~GYyK~p~~T~e~ideD----------GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~ 565 (691)
T KOG1256|consen 496 GSKGEICVRGPNVFMGYYKDPEKTAEAIDED----------GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEK 565 (691)
T ss_pred CCcceEEEecchhceeccCChHHHhhhhccc----------cccccccceeECCCccEEEEecccceEEcCCCCccChHH
Confidence 4579999999999999999999999999777 79999999999999999999999999999 999999999
Q ss_pred HHHHHhhCCCC
Q psy4547 81 IEVALRDYPVS 91 (92)
Q Consensus 81 iE~~l~~~~~V 91 (92)
||++..+.+.|
T Consensus 566 IEniy~~~~~V 576 (691)
T KOG1256|consen 566 IENIYKRSLPV 576 (691)
T ss_pred HHHHHhcCCce
Confidence 99999887655
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=3.7e-21 Score=128.87 Aligned_cols=80 Identities=31% Similarity=0.480 Sum_probs=73.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||++++|.++.||+++++.+...|.+ +||+|||+++++++|.+++.||+++++|++|.+|++.+|
T Consensus 330 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-----------~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~i 398 (483)
T PRK03640 330 FEEGEIVVKGPNVTKGYLNREDATRETFQD-----------GWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEI 398 (483)
T ss_pred CCceEEEEECcchhhhhcCCHHHHHHHHhc-----------CCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHH
Confidence 678999999999999999998877666643 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.+.+++.|+
T Consensus 399 e~~i~~~~~v~ 409 (483)
T PRK03640 399 EEVLLSHPGVA 409 (483)
T ss_pred HHHHHhCCCee
Confidence 99999999874
>PRK12582 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=3e-21 Score=133.49 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEE-e---cCCcEEEecccCCeEEE-ccEEe
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYA-L---GDGTFEVIGRSDTMVKI-RGYTI 76 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~-~---~~g~l~~~gR~~~~i~~-~G~~v 76 (92)
|++|||+++||.++.|||++++.+.+.|..+ +||+|||++++ | ++|+++|+||++|+|++ +|.+|
T Consensus 421 G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~d----------gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i 490 (624)
T PRK12582 421 GDKYEVRVKGPNVTPGYHKDPELTAAAFDEE----------GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV 490 (624)
T ss_pred CCceEEEEECCcccccccCCccchhhhcCcc----------CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEe
Confidence 7889999999999999999999888777543 69999999998 4 46999999999999996 79999
Q ss_pred chHHHH--HHHhhCCCCC
Q psy4547 77 ELQAIE--VALRDYPVSR 92 (92)
Q Consensus 77 ~~~~iE--~~l~~~~~V~ 92 (92)
+|.+|| .++.+||.|.
T Consensus 491 ~p~~iE~e~~l~~~p~V~ 508 (624)
T PRK12582 491 SVGTLRPDAVAACSPVIH 508 (624)
T ss_pred chHHHHHHHHHhcCcchh
Confidence 998885 6778999874
>PRK06178 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.84 E-value=7e-21 Score=130.04 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=73.1
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|++|||+++||.++.|||++++.+...|.+ +||+|||+++++++|.++|+||++|+|+++|.+|+|.+|
T Consensus 412 g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d-----------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~ei 480 (567)
T PRK06178 412 GAEGEIVVRTPSLLKGYWNKPEATAEALRD-----------GWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEV 480 (567)
T ss_pred CCceEEEEECCcccccccCChhhhhhcccC-----------CceeecceEEEecCCeEEEEecccccEEECCEEECHHHH
Confidence 678999999999999999998877665532 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+++.|.
T Consensus 481 E~~l~~~~~v~ 491 (567)
T PRK06178 481 EALLGQHPAVL 491 (567)
T ss_pred HHHHHhCCCee
Confidence 99999999874
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.84 E-value=1e-20 Score=132.59 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=67.6
Q ss_pred CCceeEEEecCcccccccCC--CcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNR--PDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~--~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
++.|||+++|+.++.|||++ ++.+...+...... ....+||+|||++++|++|+++|.||++|+||++|++|+|.
T Consensus 551 ~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~---~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~ 627 (718)
T PRK08043 551 EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARG---EMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLE 627 (718)
T ss_pred CCceEEEEecCCccccccCCCCcccccccccccccc---cccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHH
Confidence 35699999999999999984 33211111100000 01126999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q psy4547 80 AIEVALRDYPVS 91 (92)
Q Consensus 80 ~iE~~l~~~~~V 91 (92)
|||++|.+|+.+
T Consensus 628 eIE~~l~~~~~~ 639 (718)
T PRK08043 628 MVEQLALGVSPD 639 (718)
T ss_pred HHHHHHHhCCcc
Confidence 999999998754
>TIGR03205 pimA dicarboxylate--CoA ligase PimA
Back Show alignment and domain information
Probab=99.84 E-value=8e-21 Score=129.19 Aligned_cols=80 Identities=34% Similarity=0.598 Sum_probs=73.7
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.|||++++.+.+.|.. +||+|||+++++++|+++|.||.+++||++|.+|+|.+|
T Consensus 391 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eI 459 (541)
T TIGR03205 391 GEVGELRIRGPNVTRGYWNRPEESAEAFVG-----------DRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMI 459 (541)
T ss_pred CCeeEEEEecCCccccccCChhhhHhhhcc-----------CCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHH
Confidence 678999999999999999998877776643 499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|.+|+.|.
T Consensus 460 E~~l~~~~~v~ 470 (541)
T TIGR03205 460 EQAIYEHPGVQ 470 (541)
T ss_pred HHHHHhCCCee
Confidence 99999999874
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
>PRK12583 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=8.3e-21 Score=129.11 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=73.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.||++++..+...+... +||+|||+++++++|++++.||.+++|+++|.+|+|.+|
T Consensus 397 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~----------~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~I 466 (558)
T PRK12583 397 GEIGELCTRGYSVMKGYWNNPEATAESIDED----------GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREI 466 (558)
T ss_pred CCeeEEEEEeCccchhhcCChHHHHhhcCCC----------CCeeccceEEECCCccEEEEecccceeEECCEEeCHHHH
Confidence 6789999999999999999988776655332 699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 467 E~~l~~~~~v~ 477 (558)
T PRK12583 467 EEFLFTHPAVA 477 (558)
T ss_pred HHHHHhCCCee
Confidence 99999999873
>PRK08162 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.84 E-value=6.7e-21 Score=129.46 Aligned_cols=78 Identities=26% Similarity=0.397 Sum_probs=72.5
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEV 83 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~ 83 (92)
.|||+++++.++.|||++++.+...|.. +||+|||++++|++|.++|.||.++++|++|.+|+|.+||+
T Consensus 388 ~Gel~v~g~~~~~gY~~~~~~~~~~~~~-----------g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~ 456 (545)
T PRK08162 388 IGEIMFRGNIVMKGYLKNPKATEEAFAG-----------GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVED 456 (545)
T ss_pred eeEEEEecCcchhhhcCChhhhHHHhhC-----------CCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHH
Confidence 5999999999999999999887777643 59999999999999999999999999999999999999999
Q ss_pred HHhhCCCCC
Q psy4547 84 ALRDYPVSR 92 (92)
Q Consensus 84 ~l~~~~~V~ 92 (92)
.|.+||.|.
T Consensus 457 ~l~~~~~v~ 465 (545)
T PRK08162 457 VLYRHPAVL 465 (545)
T ss_pred HHHhCCccc
Confidence 999999874
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.84 E-value=6.7e-21 Score=130.51 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCceeEEEecCcccccccCCCccc----ccccccCCccccc--ccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEE
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLN----KMRFISTPEHLRK--TCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYT 75 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~ 75 (92)
+..|||+++|+.++.|||++++.+ ...|...+.+... ....+||+|||+++++++|.++|.||.+++|+++|.+
T Consensus 383 ~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~ 462 (576)
T PRK05620 383 RNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEW 462 (576)
T ss_pred CCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEE
Confidence 467999999999999999998876 4444433322111 0123699999999999999999999999999999999
Q ss_pred echHHHHHHHhhCCCCC
Q psy4547 76 IELQAIEVALRDYPVSR 92 (92)
Q Consensus 76 v~~~~iE~~l~~~~~V~ 92 (92)
|++.+||++|.+||.|+
T Consensus 463 i~~~eIE~~l~~~p~v~ 479 (576)
T PRK05620 463 IYSAQLENYIMAAPEVV 479 (576)
T ss_pred EcHHHHHHHHhcCCCce
Confidence 99999999999999874
>PRK13391 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=1.5e-20 Score=127.07 Aligned_cols=82 Identities=28% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++ ++.+||++++.+...+..+ .+||+|||+++++++|.++|.||.++++|++|.+|++.+
T Consensus 350 ~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~---------~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~e 419 (511)
T PRK13391 350 PGEPGTIWFEGG-RPFEYLNDPAKTAEARHPD---------GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQE 419 (511)
T ss_pred CCCceEEEEecC-cceEEcCChhHhHHhhccC---------CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHH
Confidence 367899999999 8889999888776665432 169999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|.
T Consensus 420 ie~~l~~~~~v~ 431 (511)
T PRK13391 420 AENLLITHPKVA 431 (511)
T ss_pred HHHHHHhCCCcc
Confidence 999999999873
>KOG1175|consensus
Back Show alignment and domain information
Probab=99.84 E-value=6.7e-21 Score=131.06 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=69.9
Q ss_pred CceeEEEec--C-cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 3 TPGDIYIGG--P-TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 3 ~~Gel~v~~--~-~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
+.|+|+++. | +++++||++++. |.+.++...+ ++|.|||.+++|++|+++++||.||+||++|++++++
T Consensus 440 ~~G~l~~~~~~P~~~~r~~~~n~er----f~~~yf~k~p----g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigta 511 (626)
T KOG1175|consen 440 GNGELRLKPPWPPGMFRTLWGNHER----FRAAYFKKFP----GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTA 511 (626)
T ss_pred ceeEEEEeCCCCccccccccCCHHH----hhhhhcccCC----ceEEecCceEEcCCceEEEEecccccccccceeecHH
Confidence 679999986 4 889999999983 3333222112 7999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
|||++|.+||.|.
T Consensus 512 EIE~al~~hp~Va 524 (626)
T KOG1175|consen 512 EIESALVEHPAVA 524 (626)
T ss_pred HHHHHHhhCcchh
Confidence 9999999999884
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.83 E-value=9.6e-21 Score=129.30 Aligned_cols=80 Identities=29% Similarity=0.501 Sum_probs=73.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.+|+++++.+...+.+ +||+|||+++++++|.+++.||++++|+++|.+|+|.+|
T Consensus 401 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~-----------g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~ei 469 (563)
T PRK06710 401 GEIGEIVVKGPQIMKGYWNKPEETAAVLQD-----------GWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREV 469 (563)
T ss_pred CCceEEEEecCccchhhhCChHHHhhhccc-----------CcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHH
Confidence 678999999999999999998877665532 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 470 E~~l~~~~~v~ 480 (563)
T PRK06710 470 EEVLYEHEKVQ 480 (563)
T ss_pred HHHHHhCccee
Confidence 99999999874
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.83 E-value=1.2e-20 Score=128.99 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=73.4
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.||+++++.+...|.. +||+|||+++++++|.++|.||.+|++|++|.+|+|.+|
T Consensus 415 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eI 483 (573)
T PRK05605 415 GEEGELLVRGPQVFKGYWNRPEETAKSFLD-----------GWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEV 483 (573)
T ss_pred CCeeEEEEecCchhhhhcCChhHhhhcccC-----------CCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHH
Confidence 567999999999999999998877766643 499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+|+.|+
T Consensus 484 E~~l~~~~~i~ 494 (573)
T PRK05605 484 EEVLREHPGVE 494 (573)
T ss_pred HHHHHhCcccc
Confidence 99999999874
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=2.2e-20 Score=135.62 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=68.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++|+.++.|||+++.... +.. ...+||+|||++++|+||++++.||.||+||++|++|+|.||
T Consensus 979 ~~~Gel~v~g~~~~~gY~~~~~~~~--~~~--------~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eI 1048 (1140)
T PRK06814 979 DEGGRLFVRGPNVMLGYLRAENPGV--LEP--------PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAV 1048 (1140)
T ss_pred CCceEEEEeCCCcchhhcCCCCCCc--ccc--------CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHH
Confidence 5779999999999999998754221 111 112699999999999999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q psy4547 82 EVALRDYPVS 91 (92)
Q Consensus 82 E~~l~~~~~V 91 (92)
|++|.+|+.|
T Consensus 1049 E~~l~~~~~v 1058 (1140)
T PRK06814 1049 EELAAELWPD 1058 (1140)
T ss_pred HHHHHhcCCc
Confidence 9999999876
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Back Show alignment and domain information
Probab=99.83 E-value=6.8e-21 Score=129.58 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++|+.++.|||++++.+...+... +||+|||+++++++|.+++.||.+++|+++|.+|+|.+
T Consensus 378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~----------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~ 447 (547)
T PRK06087 378 PGCEGEEASRGPNVFMGYLDEPELTARALDEE----------GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSRE 447 (547)
T ss_pred CCCcceEEEecccccccccCCHHHHHHHhCCC----------CCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHH
Confidence 36789999999999999999988776665433 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.++|.|+
T Consensus 448 iE~~l~~~~~v~ 459 (547)
T PRK06087 448 VEDILLQHPKIH 459 (547)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.83 E-value=1.2e-20 Score=128.36 Aligned_cols=80 Identities=28% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++|+.+++||+++++.+...|.. +||+|||+++++++|.++++||.+++||++|.+|++.+|
T Consensus 369 g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~-----------~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~ei 437 (542)
T PRK07786 369 GEVGEIVYRAPTLMSGYWNNPEATAEAFAG-----------GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEV 437 (542)
T ss_pred CCceEEEEEChhhhhhhcCCHHHHHHHhhC-----------CcccccceEEEcCCceEEEEecccceEEeCCEEECHHHH
Confidence 678999999999999999999887776642 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|+
T Consensus 438 E~~l~~~~~v~ 448 (542)
T PRK07786 438 ENVLASHPDIV 448 (542)
T ss_pred HHHHHhCCCcc
Confidence 99999999874
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.82 E-value=2.6e-20 Score=125.45 Aligned_cols=81 Identities=26% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.+||++++.+...+..+ +||+|||+++++++|.+++.||.++++|++|.+|++.+|
T Consensus 338 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~----------~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~i 407 (502)
T PRK08276 338 GEIGTVYFEMDGYPFEYHNDPEKTAAARNPH----------GWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEI 407 (502)
T ss_pred CCceEEEEECCCccchhcCCHHHHHHHhcCC----------CceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHH
Confidence 6789999999999999999988777777654 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|.+|.+||.|.
T Consensus 408 E~~i~~~~~v~ 418 (502)
T PRK08276 408 ENLLVTHPKVA 418 (502)
T ss_pred HHHHHhCCCcc
Confidence 99999999863
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.82 E-value=2.2e-20 Score=125.66 Aligned_cols=81 Identities=22% Similarity=0.466 Sum_probs=73.0
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.||++++..+...+..+ +||+|||+++++++|.+++.||.+|+|+++|.++++.+|
T Consensus 361 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~----------~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~i 430 (513)
T PRK07656 361 GEVGELLVRGPNVMKGYYDDPEATAAAIDAD----------GWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEV 430 (513)
T ss_pred CCceEEEEEcchhhhhhcCCHHHHhhhhccC----------CceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHH
Confidence 6789999999999999999887666555322 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+++.|.
T Consensus 431 E~~l~~~~~i~ 441 (513)
T PRK07656 431 EEVLYEHPAVA 441 (513)
T ss_pred HHHHHhCCCee
Confidence 99999999863
>PRK13382 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=4e-20 Score=125.94 Aligned_cols=77 Identities=29% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||++++|.++.||+ ++.+. .+. + +||+|||+++++++|+++|.||++|+||++|.+|+|.+|
T Consensus 389 g~~GEl~v~g~~~~~gY~--~~~~~-~~~-~----------g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eI 454 (537)
T PRK13382 389 GEVGTIFVRNDTQFDGYT--SGSTK-DFH-D----------GFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEV 454 (537)
T ss_pred CCeeEEEEEcCCcccCcc--ccchh-hcc-C----------CCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHH
Confidence 678999999999999998 33222 222 1 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+||.|.
T Consensus 455 E~~l~~~~~V~ 465 (537)
T PRK13382 455 EKTLATHPDVA 465 (537)
T ss_pred HHHHHhCCCEe
Confidence 99999999874
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=5.7e-20 Score=123.45 Aligned_cols=83 Identities=41% Similarity=0.689 Sum_probs=74.3
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.|||++++.+...|... .+.+||+|||++++ ++|++++.||.+|+|+++|.+|+|.+|
T Consensus 342 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~i 413 (503)
T PRK04813 342 GEQGEIVISGPSVSKGYLNNPEKTAEAFFTF-------DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEI 413 (503)
T ss_pred CCceEEEEeccccccccCCChhHhHHhhccC-------CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHH
Confidence 6789999999999999999998777766442 12369999999999 999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|.+||.|+
T Consensus 414 E~~l~~~~~v~ 424 (503)
T PRK04813 414 EQNLRQSSYVE 424 (503)
T ss_pred HHHHHhCCCcc
Confidence 99999999874
>PRK08316 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.82 E-value=2.4e-20 Score=125.79 Aligned_cols=80 Identities=28% Similarity=0.502 Sum_probs=73.3
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.+|+++++.+...|.. +||+|||+++++++|.+++.||.+++|+++|.+|+|.+|
T Consensus 365 g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~-----------~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~i 433 (523)
T PRK08316 365 GEVGEIVHRSPQLMLGYWDDPEKTAEAFRG-----------GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREV 433 (523)
T ss_pred CCcceEEEECCchhhhhcCCHHHHHHHhhC-----------CCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHH
Confidence 678999999999999999998877766632 599999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|+.|.+++.|+
T Consensus 434 E~~l~~~~~v~ 444 (523)
T PRK08316 434 EEALYTHPAVA 444 (523)
T ss_pred HHHHHhCCChh
Confidence 99999998873
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.82 E-value=6.6e-20 Score=124.72 Aligned_cols=81 Identities=26% Similarity=0.298 Sum_probs=69.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++++.+++|||+.+.... .+. ..+||+|||+++++++|.++|+||.+|+||++|.+|++.+
T Consensus 383 ~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~----------~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e 451 (545)
T PRK07768 383 PRGVGVIELRGESVTPGYLTMDGFIP-AQD----------ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTD 451 (545)
T ss_pred CCCEEEEEEccCcccccccCCCCCcc-ccc----------CCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHH
Confidence 36789999999999999997543221 111 1259999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.|.+||.|.
T Consensus 452 iE~~l~~~~~v~ 463 (545)
T PRK07768 452 IERAAARVEGVR 463 (545)
T ss_pred HHHHHHhCcccc
Confidence 999999999874
>PRK08180 feruloyl-CoA synthase; Reviewed
Back Show alignment and domain information
Probab=99.82 E-value=1.2e-20 Score=130.25 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEE----ecCCcEEEecccCCeEEE-ccEEe
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYA----LGDGTFEVIGRSDTMVKI-RGYTI 76 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~----~~~g~l~~~gR~~~~i~~-~G~~v 76 (92)
|..|||+++||.++.|||++++.+.+.|..+ +||+|||++++ |++|+++|+||++++|++ +|.+|
T Consensus 409 ~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~d----------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i 478 (614)
T PRK08180 409 GGKLEVRVKGPNVTPGYWRAPELTAEAFDEE----------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWV 478 (614)
T ss_pred CCCcEEEEecCccchhhcCChhHhHhhcccC----------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEe
Confidence 4579999999999999999998887777543 69999999999 468999999999998885 78876
Q ss_pred c--hHHHHHHHhhCCCCC
Q psy4547 77 E--LQAIEVALRDYPVSR 92 (92)
Q Consensus 77 ~--~~~iE~~l~~~~~V~ 92 (92)
+ +.|||.++.+||.|+
T Consensus 479 ~~~p~Eie~~l~~~p~V~ 496 (614)
T PRK08180 479 SVGPLRARAVSAGAPLVQ 496 (614)
T ss_pred cchhhhHHHHhhcCchhh
Confidence 6 788999999999884
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=6.1e-20 Score=119.65 Aligned_cols=76 Identities=38% Similarity=0.609 Sum_probs=66.8
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEV 83 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~ 83 (92)
.|||+++|+.++.||++++... .|... +||+|||++++ ++|.++|.||.+|+||++|.+|+|.+||+
T Consensus 207 ~Gei~v~g~~~~~gY~~~~~~~--~~~~~----------g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~ 273 (358)
T PRK07824 207 DGRIALGGPTLAKGYRNPVDPD--PFAEP----------GWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEA 273 (358)
T ss_pred CCEEEEecCccccccCCCcccc--cccCC----------CceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHH
Confidence 4899999999999999977632 22222 59999999999 89999999999999999999999999999
Q ss_pred HHhhCCCCC
Q psy4547 84 ALRDYPVSR 92 (92)
Q Consensus 84 ~l~~~~~V~ 92 (92)
+|.+||.|+
T Consensus 274 ~l~~~~~V~ 282 (358)
T PRK07824 274 ALATHPAVA 282 (358)
T ss_pred HHHhCCCcc
Confidence 999999874
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated
Back Show alignment and domain information
Probab=99.82 E-value=4.7e-20 Score=124.28 Aligned_cols=91 Identities=24% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcc-cccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEH-LRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~-~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
|+.|||+++|+.++.|||++++.+...|...+.. ........||+|||+++++++|++++.||.+|+|+++|.+|+|.+
T Consensus 352 ~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e 431 (515)
T TIGR03098 352 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTE 431 (515)
T ss_pred CCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHH
Confidence 6789999999999999999988776666543210 011122359999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 432 iE~~l~~~~~v~ 443 (515)
T TIGR03098 432 VEEVAYATGLVA 443 (515)
T ss_pred HHHHHhcCCCee
Confidence 999999999874
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=4.1e-20 Score=123.57 Aligned_cols=76 Identities=26% Similarity=0.475 Sum_probs=67.3
Q ss_pred eeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHH
Q psy4547 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVA 84 (92)
Q Consensus 5 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~ 84 (92)
|||+++|+.++.|||++++.+.... ..+||+|||+++++ +|.++|.||++|+||++|.+|+|.+||++
T Consensus 305 gel~v~g~~~~~gY~~~~~~~~~~~-----------~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~ 372 (458)
T PRK09029 305 GEIWLRGASLALGYWRQGQLVPLVN-----------DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERV 372 (458)
T ss_pred CEEEEecCceeeeeecCcccccccc-----------CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHH
Confidence 8999999999999998876543211 12699999999999 99999999999999999999999999999
Q ss_pred HhhCCCCC
Q psy4547 85 LRDYPVSR 92 (92)
Q Consensus 85 l~~~~~V~ 92 (92)
|.+||.|.
T Consensus 373 l~~~~~v~ 380 (458)
T PRK09029 373 INQHPLVQ 380 (458)
T ss_pred HhcCCCcc
Confidence 99999874
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.82 E-value=4.4e-20 Score=125.98 Aligned_cols=81 Identities=23% Similarity=0.485 Sum_probs=73.6
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.+|+++++.+...|. + +||+|||+++++++|.++++||.+++|+++|.+|+|.+
T Consensus 401 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~----------g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~ 469 (560)
T PRK08974 401 PGEPGELWVKGPQVMLGYWQRPEATDEVIK-D----------GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNE 469 (560)
T ss_pred CCCceEEEEecCCcchhhcCChhhhhhhhh-c----------CCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHH
Confidence 367899999999999999999887766662 2 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+||.|+
T Consensus 470 IE~~l~~~~~v~ 481 (560)
T PRK08974 470 IEDVVMLHPKVL 481 (560)
T ss_pred HHHHHHhCCCee
Confidence 999999999874
>PRK06188 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.81 E-value=4.6e-20 Score=124.92 Aligned_cols=81 Identities=27% Similarity=0.484 Sum_probs=73.4
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.||++++..+...+.. +||+|||+++++++|.++|.||.+++|+++|.+|+|.+
T Consensus 362 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~ 430 (524)
T PRK06188 362 QGEVGEICVRGPLVMDGYWNRPEETAEAFRD-----------GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPRE 430 (524)
T ss_pred CCCeeEEEEECcchhhhhcCChHHhhhhhcC-----------CceeecceEEEcCCccEEEEeccccceecCCEEECHHH
Confidence 3678999999999999999988876666532 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+|+.|.
T Consensus 431 IE~~l~~~~~v~ 442 (524)
T PRK06188 431 VEDVLAEHPAVA 442 (524)
T ss_pred HHHHHHhCCCee
Confidence 999999999873
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family
Back Show alignment and domain information
Probab=99.81 E-value=9.7e-20 Score=122.97 Aligned_cols=81 Identities=31% Similarity=0.478 Sum_probs=73.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|++|||+++++.++.+|+++++.+...|.. +||+|||+++++++|.++|.||.+|+|+++|.+|+|.+
T Consensus 353 ~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~-----------~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ 421 (508)
T TIGR02262 353 AGEPGELLISGPSSATMYWNNRAKTRDTFQG-----------EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFE 421 (508)
T ss_pred CCCeeEEEEecCccccccCCCHHHhHhhhhc-----------CceeccceEEEcCCccEEEeccccceeeeCCEEECHHH
Confidence 3678999999999999999998877666532 59999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||++|.+|++|.
T Consensus 422 ie~~l~~~~~v~ 433 (508)
T TIGR02262 422 IESALIQHPAVL 433 (508)
T ss_pred HHHHHHhCCCee
Confidence 999999999873
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.81 E-value=1.1e-19 Score=123.84 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=68.0
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
++|||+++|+.++.|||+++. ..+. .+||+|||+++++++|.+++.||++|+||++|.+|+|.+||
T Consensus 383 ~~Gei~v~g~~~~~gy~~~~~---~~~~-----------~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE 448 (539)
T PRK07008 383 AFGDLQVRGPWVIDRYFRGDA---SPLV-----------DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIE 448 (539)
T ss_pred cceEEEEeCCccchhhcCChh---hhhc-----------CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHH
Confidence 469999999999999999873 2222 15999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.+||.|+
T Consensus 449 ~~l~~~p~v~ 458 (539)
T PRK07008 449 NVAVAHPAVA 458 (539)
T ss_pred HHHHhCCcee
Confidence 9999999874
>TIGR01923 menE O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.80 E-value=1.4e-19 Score=119.89 Aligned_cols=79 Identities=32% Similarity=0.452 Sum_probs=69.7
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
+.|||+++++.++.+||+++..+...+. . +||+|||+++++++|.+++.||.+|+||++|.+|++.+||
T Consensus 291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~----------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE 359 (436)
T TIGR01923 291 GHGEIMVKGANLMKGYLYQGELTPAFEQ-Q----------GWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIE 359 (436)
T ss_pred CceEEEEECCccchhhCCChhhhhhhhc-C----------CCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHH
Confidence 5699999999999999997665443321 1 5999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
++|.++|.|+
T Consensus 360 ~~l~~~~~v~ 369 (436)
T TIGR01923 360 TVLYQHPGIQ 369 (436)
T ss_pred HHHHhCCCee
Confidence 9999999874
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=2.2e-19 Score=121.27 Aligned_cols=81 Identities=27% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCceeEEEecCcccc-cccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechH
Q psy4547 1 MGTPGDIYIGGPTLAI-GYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQ 79 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~ 79 (92)
+|++|||+++++.++. +|++++..+...+. + +||+|||+++++++|.+++.||.+|+||++|.+|+|.
T Consensus 347 ~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~-~----------~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~ 415 (509)
T PRK12406 347 QGEIGEIYSRIAGNPDFTYHNKPEKRAEIDR-G----------GFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPA 415 (509)
T ss_pred CCCceEEEEECCccccccccCCchhcccccC-C----------CCeEEccEEEEcCCceEEEeecccceEEECCEEECHH
Confidence 3678999999998765 89988876654432 2 5999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q psy4547 80 AIEVALRDYPVSR 92 (92)
Q Consensus 80 ~iE~~l~~~~~V~ 92 (92)
+||+.|.+||.|+
T Consensus 416 ~IE~~l~~~~~v~ 428 (509)
T PRK12406 416 EIEAVLHAVPGVH 428 (509)
T ss_pred HHHHHHHhCCCee
Confidence 9999999999874
>PRK07868 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.80 E-value=1.7e-19 Score=130.31 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCCceeEEEecCcccccccCCCccc--ccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLN--KMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
+|++|||+++++.. ++ ++.+ ...|.. +.+||+|||++++|+||+|+|+||+|++||++|.+|+|
T Consensus 806 ~ge~Gel~~~~~~~----~~-p~~t~~~~~~~~---------~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p 871 (994)
T PRK07868 806 VNEVGVLLARARGP----ID-PTASVKRGVFAP---------ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYT 871 (994)
T ss_pred CCCceEEEEecCCC----CC-hhhhhHhccccc---------CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcH
Confidence 47889999988753 32 3222 111211 23799999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCC
Q psy4547 79 QAIEVALRDYPVSR 92 (92)
Q Consensus 79 ~~iE~~l~~~~~V~ 92 (92)
.|||++|.+||.|+
T Consensus 872 ~EIE~~L~~hp~V~ 885 (994)
T PRK07868 872 EPVTDALGRIGGVD 885 (994)
T ss_pred HHHHHHHhcCCCee
Confidence 99999999999984
>PRK13383 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=2.8e-19 Score=121.13 Aligned_cols=78 Identities=27% Similarity=0.429 Sum_probs=68.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
+|+.|||+++++.++.+|++.+. ..+ .+ +||+|||+++++++|++++.||.+++||++|.+|+|.+
T Consensus 368 ~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~----------g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~e 433 (516)
T PRK13383 368 PRVTGRIFVGGELAGTRYTDGGG---KAV-VD----------GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRA 433 (516)
T ss_pred CCCceEEEEecCcccccccCCch---hhe-ec----------CceecceeEEEcCCccEEEeccccceEEECCEEECHHH
Confidence 36789999999999999987643 111 11 69999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCC
Q psy4547 81 IEVALRDYPVSR 92 (92)
Q Consensus 81 iE~~l~~~~~V~ 92 (92)
||+.|.+||.|.
T Consensus 434 iE~~l~~~~~v~ 445 (516)
T PRK13383 434 VENALAAHPAVA 445 (516)
T ss_pred HHHHHHhCCCee
Confidence 999999999873
>KOG1180|consensus
Back Show alignment and domain information
Probab=99.80 E-value=4.7e-20 Score=124.68 Aligned_cols=81 Identities=37% Similarity=0.643 Sum_probs=75.5
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAIE 82 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~iE 82 (92)
.|||+++|+.++.||+++++.+++.|... .+.+||+|||+|.+.+||.|.|.+|++|.||+ +|+.|+++.||
T Consensus 483 rGEI~i~G~~vt~gY~kn~ekT~e~ft~~-------~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvE 555 (678)
T KOG1180|consen 483 RGEILIGGPNVTMGYYKNEEKTKEDFTVE-------DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVE 555 (678)
T ss_pred CceEEecCCccChhhhCChhhhhhhceec-------CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHH
Confidence 69999999999999999999999999872 13369999999999999999999999999999 99999999999
Q ss_pred HHHhhCCCC
Q psy4547 83 VALRDYPVS 91 (92)
Q Consensus 83 ~~l~~~~~V 91 (92)
.+++..|.|
T Consensus 556 a~l~s~p~V 564 (678)
T KOG1180|consen 556 AALRSSPYV 564 (678)
T ss_pred HHHhcCcch
Confidence 999999987
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.78 E-value=6.1e-19 Score=118.71 Aligned_cols=80 Identities=31% Similarity=0.456 Sum_probs=73.2
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
|+.|||+++++.++.+|+++++.+...|.. +||+|||+++++++|.+++.||.++++|++|.+++|.+|
T Consensus 365 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~-----------~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~I 433 (521)
T PRK06187 365 GEVGEIIVRGPWLMQGYWNRPEATAETIDG-----------GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPREL 433 (521)
T ss_pred CCeeEEEEECcchhhhhcCCHHHHHHHhhC-----------CceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHH
Confidence 788999999999999999988777666643 499999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q psy4547 82 EVALRDYPVSR 92 (92)
Q Consensus 82 E~~l~~~~~V~ 92 (92)
|++|.+++.|+
T Consensus 434 E~~l~~~~~v~ 444 (521)
T PRK06187 434 EDALYGHPAVA 444 (521)
T ss_pred HHHHHhCCCce
Confidence 99999999874
>PRK06018 putative acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=2.2e-18 Score=117.39 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=66.9
Q ss_pred CceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHH
Q psy4547 3 TPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIE 82 (92)
Q Consensus 3 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE 82 (92)
+.|||+++++.++.+||+.. ...+.. .+||+|||+++++++|++++.||.+++|+++|.+|++.+||
T Consensus 383 ~~Gel~i~g~~~~~gy~~~~---~~~~~~----------~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE 449 (542)
T PRK06018 383 TFGRLKVRGPAVAAAYYRVD---GEILDD----------DGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLE 449 (542)
T ss_pred ceeEEEEecCCcchhhhcCc---ccEecC----------CcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHH
Confidence 46999999999999999832 111111 16999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
+++.+||.|+
T Consensus 450 ~~l~~~~~v~ 459 (542)
T PRK06018 450 NLAVGHPKVA 459 (542)
T ss_pred HHHHhCCcce
Confidence 9999999874
>PRK07798 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.74 E-value=1e-17 Score=113.14 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=69.1
Q ss_pred eeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHH
Q psy4547 5 GDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVA 84 (92)
Q Consensus 5 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~ 84 (92)
|+|+. ++.++.+||+++..+.+.|... .+.+||+|||+++++++|.+++.||.+++||++|.+|+|.+||++
T Consensus 378 g~l~~-~~~~~~gy~~~~~~t~~~f~~~-------~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~ 449 (533)
T PRK07798 378 GWIAR-RGHIPLGYYKDPEKTAETFPTI-------DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA 449 (533)
T ss_pred eEEEe-ecCccccccCChhhhHHhhccC-------CCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHH
Confidence 66654 6678999999998887777542 123699999999999999999999999999999999999999999
Q ss_pred HhhCCCCC
Q psy4547 85 LRDYPVSR 92 (92)
Q Consensus 85 l~~~~~V~ 92 (92)
|.++|.|.
T Consensus 450 l~~~~~v~ 457 (533)
T PRK07798 450 LKAHPDVA 457 (533)
T ss_pred HHhCccce
Confidence 99999873
>PLN03052 acetate--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.72 E-value=3.3e-17 Score=115.57 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=63.6
Q ss_pred ceeEEEecC--cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHH
Q psy4547 4 PGDIYIGGP--TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAI 81 (92)
Q Consensus 4 ~Gel~v~~~--~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~i 81 (92)
+|||+++++ ....+|+++.. ...-|...+. ..+.+||+|||++++|++|+++|+||+||+||++|++|+|.||
T Consensus 553 ~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~----~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EI 627 (728)
T PLN03052 553 TGELALFPLMFGASSTLLNADH-YKVYFKGMPV----FNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627 (728)
T ss_pred eEEEEEeCCCCCCCccccCchh-hhhhhhcCCC----CCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHH
Confidence 599999764 33456777532 2222222111 1123599999999999999999999999999999999999999
Q ss_pred HHHHh-hCCCCC
Q psy4547 82 EVALR-DYPVSR 92 (92)
Q Consensus 82 E~~l~-~~~~V~ 92 (92)
|++|. .||.|.
T Consensus 628 E~~l~~~~p~V~ 639 (728)
T PLN03052 628 ERVCNAADESVL 639 (728)
T ss_pred HHHHHhcCCCcc
Confidence 99995 789873
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]
Back Show alignment and domain information
Probab=99.71 E-value=6.8e-18 Score=111.35 Aligned_cols=62 Identities=45% Similarity=0.806 Sum_probs=56.3
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEc
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIR 72 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~ 72 (92)
+|+.|||+++||.++.||+++++.+.+.|.+. +||+|||++++|++|+++++||.||+||++
T Consensus 356 ~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~----------~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 356 PGEPGEIVIRGPNVFSGYYNDPELTAEAFIDD----------GWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TTSEEEEEEESTTSBSEETTBHHHHHHHEETT----------SEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred ccccccccccCCccceeeeccccccccccccc----------cceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 47889999999999999999888888887653 599999999999999999999999999974
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
>PRK08308 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.65 E-value=7.4e-16 Score=102.21 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=48.2
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
+||+|||+++++++|+++|+||.+++||++|.+|+|.+||++|.++|.|+
T Consensus 291 ~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~ 340 (414)
T PRK08308 291 KEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQ 340 (414)
T ss_pred ceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCee
Confidence 69999999999999999999999999999999999999999999999874
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.61 E-value=1.1e-15 Score=105.89 Aligned_cols=79 Identities=57% Similarity=1.009 Sum_probs=74.2
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHH
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQA 80 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~ 80 (92)
.|..|||++.|.++.+||++.++.+...|... ++|+|||++++.++|.+.++||.|.++|++|.+|.+.|
T Consensus 564 ~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~----------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~e 633 (642)
T COG1020 564 LGVPGELYIAGLGLALGYLNRPDLTAERFIAL----------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGE 633 (642)
T ss_pred CCCCeeeEECCcchhhhhcCChhhhHHHhhhc----------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHH
Confidence 36789999999999999999999999999775 28999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q psy4547 81 IEVALRDYP 89 (92)
Q Consensus 81 iE~~l~~~~ 89 (92)
||..+.++|
T Consensus 634 ie~~l~~~~ 642 (642)
T COG1020 634 IEAALAEQP 642 (642)
T ss_pred HHHHHhcCC
Confidence 999999876
>KOG1179|consensus
Back Show alignment and domain information
Probab=99.59 E-value=3.7e-15 Score=101.37 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCCceeEEEe--c--C-cccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEE
Q psy4547 1 MGTPGDIYIG--G--P-TLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYT 75 (92)
Q Consensus 1 ~g~~Gel~v~--~--~-~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~ 75 (92)
|||+|.|+-+ . | ..+.||.++...+.++...+.+ ..++.||.|||+..+|+.|+++|.+|..|++.+.|+|
T Consensus 445 ~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVF----kkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGEN 520 (649)
T KOG1179|consen 445 PGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVF----KKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGEN 520 (649)
T ss_pred CCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhh----ccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCc
Confidence 6899977532 2 3 2388999988778777776665 4456799999999999999999999999999999999
Q ss_pred echHHHHHHHhhCCCC
Q psy4547 76 IELQAIEVALRDYPVS 91 (92)
Q Consensus 76 v~~~~iE~~l~~~~~V 91 (92)
|++.|||++|.....+
T Consensus 521 VsTtEVe~~l~~~~~~ 536 (649)
T KOG1179|consen 521 VSTTEVEDVLSALDFL 536 (649)
T ss_pred ccHHHHHHHHhhhccc
Confidence 9999999999877654
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase
Back Show alignment and domain information
Probab=99.54 E-value=3.3e-14 Score=94.85 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=45.6
Q ss_pred eEEEcCCeEEEecC-C-----cEEEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 43 RLYNTGDWGYALGD-G-----TFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 43 ~~~~tGD~~~~~~~-g-----~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
.||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.+||.|.
T Consensus 289 ~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~ 344 (422)
T TIGR02155 289 IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELS 344 (422)
T ss_pred eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcC
Confidence 59999999999875 4 46899999999999999999999999999999884
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family
Back Show alignment and domain information
Probab=99.45 E-value=2e-13 Score=90.73 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=47.9
Q ss_pred eEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 43 RLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 43 ~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
.|++|||+++++++|+|+|.||.|++||++|.+|+|.+||++|.+||.|+
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~ 324 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVR 324 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCce
Confidence 47999999999999999999999999999999999999999999999874
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
>PRK09188 serine/threonine protein kinase; Provisional
Back Show alignment and domain information
Probab=99.39 E-value=7.6e-13 Score=87.44 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=41.7
Q ss_pred eeEEEcCCeEEE-ecCCcEEEecccCCeEEEcc---EEechHHHHHHHhhCCCCC
Q psy4547 42 VRLYNTGDWGYA-LGDGTFEVIGRSDTMVKIRG---YTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 42 ~~~~~tGD~~~~-~~~g~l~~~gR~~~~i~~~G---~~v~~~~iE~~l~~~~~V~ 92 (92)
.+||+|||++++ |++|+|+|.||.+ +| .+|+|. ||++|.+||+|.
T Consensus 208 dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~ 256 (365)
T PRK09188 208 RIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVS 256 (365)
T ss_pred CcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCcc
Confidence 479999999998 7999999999997 78 799999 999999999984
>TIGR03335 F390_ftsA coenzyme F390 synthetase
Back Show alignment and domain information
Probab=98.93 E-value=4.9e-09 Score=70.92 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=37.1
Q ss_pred EEEcCCeEEEec-----CCc----EEEecccCCeEEEccEEechHHHHHHHhhC
Q psy4547 44 LYNTGDWGYALG-----DGT----FEVIGRSDTMVKIRGYTIELQAIEVALRDY 88 (92)
Q Consensus 44 ~~~tGD~~~~~~-----~g~----l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~ 88 (92)
=|+|||++.+.. .|. +...||.||+++++|.+|+|.+||++|.++
T Consensus 299 RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~ 352 (445)
T TIGR03335 299 NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQR 352 (445)
T ss_pred EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhcc
Confidence 489999998632 232 445699999999999999999999999984
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
>KOG1178|consensus
Back Show alignment and domain information
Probab=98.79 E-value=7.9e-09 Score=75.38 Aligned_cols=52 Identities=37% Similarity=0.606 Sum_probs=48.9
Q ss_pred ceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 41 GVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 41 ~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
..++|+|||.++.-.+|.+.+.||.|++||.+|.++...+|+..+..||.|+
T Consensus 452 ~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~ 503 (1032)
T KOG1178|consen 452 KARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVK 503 (1032)
T ss_pred hhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchh
Confidence 3479999999999999999999999999999999999999999999999874
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=98.58 E-value=2.8e-07 Score=62.30 Aligned_cols=49 Identities=37% Similarity=0.493 Sum_probs=42.6
Q ss_pred EEEcCCeEEEecC----Cc-----EEEecccCCeEEEccEEechHHHHHHHhhCCCCC
Q psy4547 44 LYNTGDWGYALGD----GT-----FEVIGRSDTMVKIRGYTIELQAIEVALRDYPVSR 92 (92)
Q Consensus 44 ~~~tGD~~~~~~~----g~-----l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~~~V~ 92 (92)
=|+|||+....++ |+ ..+.||.||++++.|.+|+|..||.+|.+.+.+.
T Consensus 303 RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~ 360 (438)
T COG1541 303 RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVT 360 (438)
T ss_pred EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCC
Confidence 4999999999763 32 4688999999999999999999999999998763
>PTZ00297 pantothenate kinase; Provisional
Back Show alignment and domain information
Probab=98.52 E-value=1.3e-07 Score=71.45 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=49.1
Q ss_pred ceeEEEecCcccccccCCCcccccccccCCcccccccceeEEEcCCeEEEecCCcEEEecccCCeEEE-ccEEechHHHH
Q psy4547 4 PGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKI-RGYTIELQAIE 82 (92)
Q Consensus 4 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~~~~iE 82 (92)
.|||+++ |+++++.|.+.+ . +|+ +||.|.|+||++++||. +|++|+|+.||
T Consensus 825 ~GEIlvr-------~~kdpe~T~e~~--~----------gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE 876 (1452)
T PTZ00297 825 IGQLVLA-------KKGEPRRTLPIA--A----------QWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELE 876 (1452)
T ss_pred CCeEEEE-------ECCChHHHHHhh--C----------cCc---------cCCeEEEEeccccceECCCCcEEcHHHHH
Confidence 4888885 457777665421 1 354 68999999999999999 99999999999
Q ss_pred HHHhhCCCCC
Q psy4547 83 VALRDYPVSR 92 (92)
Q Consensus 83 ~~l~~~~~V~ 92 (92)
+.+.++|.|.
T Consensus 877 ~~l~~sp~I~ 886 (1452)
T PTZ00297 877 RIFSQSRYVN 886 (1452)
T ss_pred HHHhcCCCcc
Confidence 9999999873
>KOG3628|consensus
Back Show alignment and domain information
Probab=98.51 E-value=3.2e-07 Score=67.28 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCceeEEEecCcccccccCCCcccccccccCCcccc---c-ccceeEEEcCCeEEEe------cCC----cEEEecccCC
Q psy4547 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLR---K-TCGVRLYNTGDWGYAL------GDG----TFEVIGRSDT 67 (92)
Q Consensus 2 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~tGD~~~~~------~~g----~l~~~gR~~~ 67 (92)
|+.||||+.+..-+.+|+...+. +..+.++.. + ..+..|-||||+|+.. +.+ -||++|-.++
T Consensus 1178 ge~GEIW~~S~hnA~~~~~~~d~----~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~E 1253 (1363)
T KOG3628|consen 1178 GELGEIWVNSAHNASCSFTIGDE----LRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDE 1253 (1363)
T ss_pred CCcceEEeccccccccccccCch----hhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccc
Confidence 78899999998888777654221 222222211 1 1245799999999983 222 4899999999
Q ss_pred eEEEccEEechHHHHHHHh-hCCCC
Q psy4547 68 MVKIRGYTIELQAIEVALR-DYPVS 91 (92)
Q Consensus 68 ~i~~~G~~v~~~~iE~~l~-~~~~V 91 (92)
.+.++|.+.+|.+||..+. .||.|
T Consensus 1254 tlEl~GL~h~p~DIE~TV~~vH~~I 1278 (1363)
T KOG3628|consen 1254 TLELNGLRHFPSDIETTVERVHPSI 1278 (1363)
T ss_pred eeeecCcccCcchHHHHHHHhcccc
Confidence 9999999999999999998 57776
>KOG3628|consensus
Back Show alignment and domain information
Probab=97.67 E-value=1.7e-05 Score=58.62 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=58.5
Q ss_pred CCCceeEEEecCcccccccCCCcccccccccCCcc--cccccceeEEEcCCeEEEecCCcEEEecccCCeEEEccEEech
Q psy4547 1 MGTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEH--LRKTCGVRLYNTGDWGYALGDGTFEVIGRSDTMVKIRGYTIEL 78 (92)
Q Consensus 1 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~--~~~~~~~~~~~tGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~~ 78 (92)
++++|||||.++++...||.-+..+...|...+-. ........|.+||=+|++..++-+++.++.|....+.|..+..
T Consensus 527 ~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~ 606 (1363)
T KOG3628|consen 527 TDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNA 606 (1363)
T ss_pred cCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhh
Confidence 47899999999999999998877776666432211 1112233589999999998766655556777776777777766
Q ss_pred HHHHH
Q psy4547 79 QAIEV 83 (92)
Q Consensus 79 ~~iE~ 83 (92)
.+|-.
T Consensus 607 d~iv~ 611 (1363)
T KOG3628|consen 607 DDIVA 611 (1363)
T ss_pred hhhHh
Confidence 55543
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme
Back Show alignment and domain information
Probab=96.30 E-value=0.011 Score=40.60 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=34.5
Q ss_pred EEEcCCeEEEecC----Cc----E-EEecccCCeEEE---cc--EEechHHHHHHHh-hCCCC
Q psy4547 44 LYNTGDWGYALGD----GT----F-EVIGRSDTMVKI---RG--YTIELQAIEVALR-DYPVS 91 (92)
Q Consensus 44 ~~~tGD~~~~~~~----g~----l-~~~gR~~~~i~~---~G--~~v~~~~iE~~l~-~~~~V 91 (92)
=|+|||++..... |. + .+.||.+|++++ +| .+|+|..++.+|. ..+.|
T Consensus 296 RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i 358 (430)
T TIGR02304 296 RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLI 358 (430)
T ss_pred eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCC
Confidence 4899999887443 32 3 378999999986 34 5569999988755 45554
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin
Back Show alignment and domain information
Probab=95.95 E-value=0.013 Score=41.05 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=35.8
Q ss_pred EEcCCeEEEec--CC--cEEEecccCCeEEEccEEechHHHHHHHhhC
Q psy4547 45 YNTGDWGYALG--DG--TFEVIGRSDTMVKIRGYTIELQAIEVALRDY 88 (92)
Q Consensus 45 ~~tGD~~~~~~--~g--~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~~ 88 (92)
|+.||+++... +. .+.|+||.+.++++.|++++-.+|.++|.+.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~ 418 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARA 418 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHH
Confidence 88999998843 34 6999999999999999999999999998753
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
>PLN02249 indole-3-acetic acid-amido synthetase
Back Show alignment and domain information
Probab=95.04 E-value=0.053 Score=38.77 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=38.1
Q ss_pred EEcCCeEEEecC----CcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 45 YNTGDWGYALGD----GTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 45 ~~tGD~~~~~~~----g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
|+.||.+++..- -.|.|+||.+.++++.|.++.-.+++.+|.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 789999998543 3689999999999999999999999998876
>PLN02247 indole-3-acetic acid-amido synthetase
Back Show alignment and domain information
Probab=90.87 E-value=0.65 Score=33.53 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=36.9
Q ss_pred EEcCCeEEEe----cCCcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 45 YNTGDWGYAL----GDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 45 ~~tGD~~~~~----~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
|+.||+.+.. ..-.|.|++|.+.+..+.|.++.-.++-++|.+
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ 463 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence 7899988773 345799999999999999999999999888765
>PLN02620 indole-3-acetic acid-amido synthetase
Back Show alignment and domain information
Probab=90.43 E-value=0.78 Score=33.17 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=36.7
Q ss_pred EEcCCeEEEe----cCCcEEEecccCCeEEEccEEechHHHHHHHhh
Q psy4547 45 YNTGDWGYAL----GDGTFEVIGRSDTMVKIRGYTIELQAIEVALRD 87 (92)
Q Consensus 45 ~~tGD~~~~~----~~g~l~~~gR~~~~i~~~G~~v~~~~iE~~l~~ 87 (92)
|+.||+.+.. ..-.|.|++|.+.+..+.|.++.-.++-.++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 7899988874 345699999999999999999999998887764
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 92
d1amua_ 514
e.23.1.1 (A:) Phenylalanine activating domain of g
3e-20 d1pg4a_ 643
e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en
5e-18 d1v25a_ 534
e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0
1e-17 d1lcia_ 541
e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali
8e-17 d1ry2a_ 640
e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
4e-14 d1mdba_ 536
e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B
5e-11 d3cw9a1 503
e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc
3e-10
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]
Score = 81.1 bits (199), Expect = 3e-20
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G++ IGG LA GY RP+L +F+ P G +LY TGD L DG E
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPF----VPGEKLYKTGDQARWLSDGNIEY 409
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+GR D VKIRG+ +EL+ +E L +
Sbjct: 410 LGRIDNQVKIRGHRVELEEVESILLKHM 437
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]
Score = 74.7 bits (183), Expect = 5e-18
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
T G++ I P A + + + ST + +Y +GD DG +
Sbjct: 455 ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK--------NMYFSGDGARRDEDGYY 506
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ GR D ++ + G+ + IE AL +P
Sbjct: 507 WITGRVDDVLNVSGHRLGTAEIESALVAHP 536
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]
Score = 73.8 bits (180), Expect = 1e-17
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G++ + GP + GY + + + TGD +G E+
Sbjct: 374 KALGEVQLKGPWITGGYYGNEEATRSALTPDG----------FFRTGDIAVWDEEGYVEI 423
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
R ++K G I +E AL +P
Sbjct: 424 KDRLKDLIKSGGEWISSVDLENALMGHP 451
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 71.5 bits (174), Expect = 8e-17
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G++ + GP + GY+N P+ ++GD Y D F +
Sbjct: 382 NQRGELCVRGPMIMSGYVNNPEATNALID----------KDGWLHSGDIAYWDEDEHFFI 431
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
+ R +++K +GY + +E L +P
Sbjct: 432 VDRLKSLIKYKGYQVAPAELESILLQHP 459
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (154), Expect = 4e-14
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 2 GTPGDIYIGG--PTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTF 59
G + + P+ A D +++ Y TGD DG
Sbjct: 445 HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP--------GYYFTGDGAAKDKDGYI 496
Query: 60 EVIGRSDTMVKIRGYTIELQAIEVALRDYP 89
++GR D +V + G+ + IE A+ + P
Sbjct: 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDP 526
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]
Score = 55.0 bits (131), Expect = 5e-11
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 2 GTPGDIYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEV 61
G G + GP GY + N F Y TGD DG V
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASF----------TEDGFYRTGDIVRLTRDGYIVV 425
Query: 62 IGRSDTMVKIRGYTIELQAIEVALRDYP 89
GR+ + G + + +E L +P
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHP 453
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]
Score = 52.7 bits (125), Expect = 3e-10
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 7 IYIGGPTLAIGYLNRPDLNKMRFISTPEHLRKTCGVRLYNTGDWGYALGDGTFEVIGRSD 66
I + +GYLN+P + Y T D +GT ++GR D
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQD-----------GWYRTSDVAVWTPEGTVRILGRVD 402
Query: 67 TMVKIRGYTIELQAIEVALRDYP 89
M+ G I IE L P
Sbjct: 403 DMIISGGENIHPSEIERVLGTAP 425
