Psyllid ID: psy4562

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
AEYTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE
Secondary Structure (PSIPRED)
ccEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccccccEEEEccEEEcccccccccEEEEHHHHHcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcEEEEcccccccccccccccccccccccHHHcHHHHHHHHccccHHHHHHcEEEEccccccccEEEEHHHHHHHHHHcccccEEEHHHHHHccHHHHHHcccccc
Coil and Loop (DISEMBL)
aeytlkwsavrvvpdrhpfghqprsplinyqkfkiriedpprrkdmVFIGGAVLAEKFKiriedpprrkdMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE
Flexible Loop (DISEMBL)
aeytlkwsavrvvpdrhpfghqprsplinyqkFKIRIEDPPRRKDMVFiggavlaekfkiriedpprrkdMVFIGGAVLAEVMKDRDAFWMSNkeyqergvsvlsklgnrae
Low Complexity Region (SEG)
AEYTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE
Disordered region (IsUnstruct)
****LKWSAVRVVPDRHPFG****SPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNK******************
Disordered Region (DISOPRED)
**YTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPR**DMVF***AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL*KLGN***
Disordered Region (DISEMBL)
AEYTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE
Disordered Region (DISPRO)
AEYTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AEYTLKWSAVRVVPDRHPFGHQPRSPLINYQKFKIRIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRAE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P45888	394	Actin-related protein 2 O	yes	N/A	0.455	0.129	0.843	6e-19
Q5M7U6	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
P61161	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
P61160	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
A7MB62	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
Q5R4K0	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
P53488	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.769	3e-18
Q7ZXV3	394	Actin-related protein 2-B	N/A	N/A	0.464	0.131	0.75	8e-18
Q7ZTP2	394	Actin-related protein 2-A	N/A	N/A	0.464	0.131	0.75	8e-18
Q5BL41	394	Actin-related protein 2 O	yes	N/A	0.464	0.131	0.75	9e-18

>sp|P45888|ARP2_DROME Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRD FWMS +EYQE+G+ VL KL
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKL 389

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.
Drosophila melanogaster (taxid: 7227)

>sp|Q5M7U6|ARP2_RAT Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Rattus norvegicus (taxid: 10116)

>sp|P61161|ARP2_MOUSE Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Mus musculus (taxid: 10090)

>sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Homo sapiens (taxid: 9606)

>sp|A7MB62|ARP2_BOVIN Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Bos taurus (taxid: 9913)

>sp|Q5R4K0|ARP2_PONAB Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Pongo abelii (taxid: 9601)

>sp|P53488|ARP2_CHICK Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Gallus gallus (taxid: 9031)

>sp|Q7ZXV3|ARP2B_XENLA Actin-related protein 2-B OS=Xenopus laevis GN=actr2-b PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+G  VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGTRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Xenopus laevis (taxid: 8355)

>sp|Q7ZTP2|ARP2A_XENLA Actin-related protein 2-A OS=Xenopus laevis GN=actr2-a PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+G  VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGTRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Xenopus laevis (taxid: 8355)

>sp|Q5BL41|ARP2_XENTR Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+G  VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGTRVLEKLG 390

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
189235544	394	PREDICTED: similar to actin [Tribolium c	0.491	0.139	0.836	4e-19
347964888	395	AGAP000985-PA [Anopheles gambiae str. PE	0.491	0.139	0.818	2e-18
312383097	343	hypothetical protein AND_03954 [Anophele	0.491	0.160	0.818	2e-18
170028731	395	actin [Culex quinquefasciatus] gi|167877	0.491	0.139	0.818	3e-18
157130317	395	actin [Aedes aegypti] gi|108871910|gb|EA	0.491	0.139	0.818	3e-18
289740925	394	actin-related protein ARP2/3 complex sub	0.464	0.131	0.846	3e-18
242007573	375	conserved hypothetical protein [Pediculu	0.491	0.146	0.781	9e-18
321474107	393	hypothetical protein DAPPUDRAFT_209234 [	0.491	0.139	0.781	1e-17
195567126	400	GD15743 [Drosophila simulans] gi|1942045	0.455	0.127	0.843	2e-17
195447458	394	GK25245 [Drosophila willistoni] gi|19416	0.455	0.129	0.843	2e-17

>gi|189235544|ref|XP_001814869.1| PREDICTED: similar to actin [Tribolium castaneum] gi|270003115|gb|EEZ99562.1| hypothetical protein TcasGA2_TC000144 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMS +EY+E+G+ VL KLG R+
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSKQEYEEQGLKVLKKLGPRS 393

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964888|ref|XP_309181.5| AGAP000985-PA [Anopheles gambiae str. PEST] gi|333466524|gb|EAA04899.5| AGAP000985-PA [Anopheles gambiae str. PEST]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRDAFWMS  EYQE+G++VL KL  R 
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAFWMSKAEYQEQGLNVLKKLSTRT 393

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383097|gb|EFR28310.1| hypothetical protein AND_03954 [Anopheles darlingi]

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRDAFWMS  EYQE+G++VL KL  R 
Sbjct: 287 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAFWMSKAEYQEQGLNVLKKLSART 341

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028731|ref|XP_001842248.1| actin [Culex quinquefasciatus] gi|167877933|gb|EDS41316.1| actin [Culex quinquefasciatus]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRDAFWMS  EYQE+G++VL KL  R 
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAFWMSKAEYQEQGLNVLKKLSART 393

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130317|ref|XP_001655658.1| actin [Aedes aegypti] gi|108871910|gb|EAT36135.1| AAEL011750-PA [Aedes aegypti]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRDAFWMS  EYQE+G++VL KL  R 
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAFWMSKAEYQEQGLNVLKKLSART 393

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740925|gb|ADD19210.1| actin-related protein ARP2/3 complex subunit ARP2 [Glossina morsitans morsitans]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 48/52 (92%)

Query: 56  EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
           EKFKIRIEDPPRRKDMVFIGGAVLAEV KDRDA+WMS +EYQE+G+ VL KL
Sbjct: 338 EKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAYWMSKQEYQEQGIKVLQKL 389

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007573|ref|XP_002424614.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508057|gb|EEB11876.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 49/55 (89%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KF+IRIEDPPRRKDMVFIGGAVLAEVMKDRD FWMS +EY+E+G  VL KLG+ +
Sbjct: 320 KFRIRIEDPPRRKDMVFIGGAVLAEVMKDRDTFWMSRQEYEEKGGGVLKKLGSAS 374

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474107|gb|EFX85073.1| hypothetical protein DAPPUDRAFT_209234 [Daphnia pulex]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA 111
           KFKIRIEDPPRRKDMVFIGGAVLA+VMKD+++FWMS +EY ERG+ VL KL NR+
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLADVMKDKESFWMSREEYNERGIRVLDKLVNRS 393

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567126|ref|XP_002107121.1| GD15743 [Drosophila simulans] gi|194204522|gb|EDX18098.1| GD15743 [Drosophila simulans]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRD FWMS +EYQE+G+ VL KL
Sbjct: 345 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKL 395

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447458|ref|XP_002071223.1| GK25245 [Drosophila willistoni] gi|194167308|gb|EDW82209.1| GK25245 [Drosophila willistoni]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
           KFKIRIEDPPRRKDMVFIGGAVLAEV KDRDAFWMS +EYQE+G+ VL K+
Sbjct: 339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDAFWMSKQEYQEQGLKVLQKV 389

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
ZFIN|ZDB-GENE-050410-4	394	actr2b "ARP2 actin-related pro	0.571	0.162	0.640	2.3e-19
FB|FBgn0011742	394	Arp2 "Actin-related protein 2"	0.455	0.129	0.843	2.2e-18
UNIPROTKB|F1NRM5	378	ACTR2 "Actin-related protein 2	0.571	0.169	0.656	5.1e-18
UNIPROTKB|F1NHN5	393	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
UNIPROTKB|P53488	394	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
UNIPROTKB|A7MB62	394	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
UNIPROTKB|F1MRG7	394	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
UNIPROTKB|P61160	394	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
UNIPROTKB|B5APU3	394	ACTR2 "Actin-related protein 2	0.571	0.162	0.656	6.1e-18
MGI|MGI:1913963	394	Actr2 "ARP2 actin-related prot	0.571	0.162	0.656	6.1e-18

ZFIN|ZDB-GENE-050410-4 actr2b "ARP2 actin-related protein 2b homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FW++ +EYQE+GV VL
Sbjct:   327 ERVLKGDVDKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWLTREEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0008150 "biological_process" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0011742 Arp2 "Actin-related protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query:    57 KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL 107
             KFKIRIEDPPRRKDMVFIGGAVLAEV KDRD FWMS +EYQE+G+ VL KL
Sbjct:   339 KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKL 389

GO:0005884 "actin filament" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS

GO:0003779 "actin binding" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=NAS

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F1NRM5 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   311 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 370

Query:   105 SKLG 108
              KLG
Sbjct:   371 EKLG 374

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

UNIPROTKB|F1NHN5 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   326 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 385

Query:   105 SKLG 108
              KLG
Sbjct:   386 EKLG 389

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

UNIPROTKB|P53488 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|A7MB62 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0005515 "protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|F1MRG7 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0051653 "spindle localization" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P61160 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=RCA;TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

UNIPROTKB|B5APU3 ACTR2 "Actin-related protein 2-like protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0051653 "spindle localization" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1913963 Actr2 "ARP2 actin-related protein 2" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    45 DMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
             + V  G      KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL
Sbjct:   327 ERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVL 386

Query:   105 SKLG 108
              KLG
Sbjct:   387 EKLG 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IGI

GO:0008356 "asymmetric cell division" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0030478 "actin cap" evidence=IDA

GO:0033206 "cytokinesis after meiosis" evidence=IGI

GO:0042995 "cell projection" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IGI

GO:0051653 "spindle localization" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z256	ARP2_ORYSJ	No assigned EC number	0.5223	0.5982	0.1722	yes	N/A
P61160	ARP2_HUMAN	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
P53488	ARP2_CHICK	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
P53489	ARP2_CAEEL	No assigned EC number	0.5797	0.5982	0.1696	yes	N/A
A7MB62	ARP2_BOVIN	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
Q5M7U6	ARP2_RAT	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
Q5R4K0	ARP2_PONAB	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
Q5BL41	ARP2_XENTR	No assigned EC number	0.75	0.4642	0.1319	yes	N/A
P32381	ARP2_YEAST	No assigned EC number	0.6363	0.4910	0.1406	yes	N/A
P61161	ARP2_MOUSE	No assigned EC number	0.7692	0.4642	0.1319	yes	N/A
P45888	ARP2_DROME	No assigned EC number	0.8431	0.4553	0.1294	yes	N/A
O96621	ARP2_DICDI	No assigned EC number	0.6666	0.4553	0.1301	yes	N/A
Q56A35	ARP2B_DANRE	No assigned EC number	0.75	0.4642	0.1319	yes	N/A
Q9UUJ1	ARP2_SCHPO	No assigned EC number	0.5454	0.4910	0.1410	yes	N/A
Q7SXW6	ARP2A_DANRE	No assigned EC number	0.75	0.4642	0.1319	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
smart00268	373	smart00268, ACTIN, Actin	2e-10
pfam00022	367	pfam00022, Actin, Actin	1e-08
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	2e-06
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	9e-06
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	1e-05
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	2e-05

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           K K+++  PP RK  V++GG++LA +    D  W++ KEY+E G  ++ +
Sbjct: 322 KLKVKVIAPPERKYSVWLGGSILASLSTFED-MWITKKEYEESGSQIVER 370

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 58  FKIRIEDPP-RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
            K++I  PP  RK   +IGG++LA +   +   W+S +EY+E G SV+ +
Sbjct: 316 VKVKIIAPPNERKYSAWIGGSILASLGTFQQ-MWVSKQEYEEHGSSVVER 364

Length = 367

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 59  KIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
            IRI  PP RK   FIGG++LA +   +   W+S +E+ E G  +L +
Sbjct: 331 TIRISAPPERKFSTFIGGSILASLATFKK-IWISKQEFDEYGSVILHR 377

Length = 380

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
            +K+ +  PP      ++G ++LA  ++     W++ +EY+E G  +L
Sbjct: 393 IWKVSVIPPPDPSLDAWLGASILA-SLETFQQLWITKEEYEEHGPDIL 439

Length = 444

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSV 103
            +     KI++  PP RK  V+IGG++L+  +      W++ +EY E G S+
Sbjct: 322 TLAPSTMKIKVVAPPERKYSVWIGGSILSS-LPTFQQMWVTKEEYDESGPSI 372

Length = 378

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 373

Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG0676|consensus	372		99.93
PTZ00452	375	actin; Provisional	99.93
PTZ00466	380	actin-like protein; Provisional	99.91
PTZ00281	376	actin; Provisional	99.91
PTZ00004	378	actin-2; Provisional	99.9
PTZ00280	414	Actin-related protein 3; Provisional	99.88
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	99.87
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	99.86
KOG0679|consensus	426		99.81
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.78
KOG0680|consensus	400		99.77
COG5277	444	Actin and related proteins [Cytoskeleton]	99.76
KOG0677|consensus	389		99.7
KOG0678|consensus	415		99.49
KOG0681|consensus	645		99.49
KOG0797|consensus	618		98.53
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	94.43
PRK13927	334	rod shape-determining protein MreB; Provisional	93.87
PRK13930	335	rod shape-determining protein MreB; Provisional	93.71
PRK13929	335	rod-share determining protein MreBH; Provisional	93.4
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	92.73
PRK13928	336	rod shape-determining protein Mbl; Provisional	91.94
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	81.12

>KOG0676|consensus

Probab=99.93  E-value=6.2e-27  Score=188.41  Aligned_cols=90  Identities=29%  Similarity=0.479  Sum_probs=82.7

Q ss_pred             cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562          19 FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV   72 (112)
Q Consensus        19 ~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a   72 (112)
                      .+|+|+.+|+...      .+||++||+|+|+.    |||+||+||+                +..+++|.++|+|.+++
T Consensus       257 ~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~  336 (372)
T KOG0676|consen  257 VLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSA  336 (372)
T ss_pred             hcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccce
Confidence            4788888877654      57999999999998    9999999998                46789999999999999


Q ss_pred             eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      |+||||+|+++ +|+++||||+||+|.|++++||||+
T Consensus       337 WlGgSIlasls-tfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  337 WLGGSILASLS-TFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             ecCceeEeecc-hHhhccccHHHHhhhCCceeeeccC
Confidence            99999999998 7999999999999999999999996

>PTZ00452 actin; Provisional

Probab=99.93  E-value=2.2e-26  Score=184.44  Aligned_cols=99  Identities=25%  Similarity=0.448  Sum_probs=86.0

Q ss_pred             eeecCCCCc------------cccCCCCCCcc-----hh-hhchhcCCccCcCc----eEEecCCCCC------------
Q psy4562          10 VRVVPDRHP------------FGHQPRSPLIN-----YQ-KFKIRIEDPPRRKD----MVFIGGAVLA------------   55 (112)
Q Consensus        10 ~~~~~~~~p------------~~f~p~~~gi~-----~~-~~sI~~c~~d~r~~----IvL~GGss~~------------   55 (112)
                      .+.|||...            .+|+|+.+|++     +. .++|++||+|+|+.    |||+||+|+|            
T Consensus       239 ~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~  318 (375)
T PTZ00452        239 PYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELT  318 (375)
T ss_pred             eEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHH
Confidence            467787443            47888876544     33 57999999999999    9999999999            


Q ss_pred             ----CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          56 ----EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        56 ----~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                          +..+++|.++++|++++|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus       319 ~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~-~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        319 NLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLS-TQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             HhCCCCceeEEecCCCcceeEEECchhhcCcc-chhhhEeEHHHHhccCcceeeeecC
Confidence                3568999999999999999999999987 7999999999999999999999985

>PTZ00466 actin-like protein; Provisional

Probab=99.91  E-value=1.5e-25  Score=180.01  Aligned_cols=90  Identities=30%  Similarity=0.509  Sum_probs=80.6

Q ss_pred             cccCCCCCCcch------hhhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562          19 FGHQPRSPLINY------QKFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV   72 (112)
Q Consensus        19 ~~f~p~~~gi~~------~~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a   72 (112)
                      .+|+|+.+|++.      ..+||++||+|+|+.    |||+||+|+|                ...+++|..+++|++++
T Consensus       265 ~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~a  344 (380)
T PTZ00466        265 VLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFST  344 (380)
T ss_pred             cccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeE
Confidence            479997766543      257999999999999    9999999999                35679999999999999


Q ss_pred             eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      |+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus       345 W~GgSilasl~-~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        345 FIGGSILASLA-TFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             EECchhhcCcc-chhhhEeEHHHHhhhCcHhheeecC
Confidence            99999999987 7999999999999999999999985

>PTZ00281 actin; Provisional

Probab=99.91  E-value=1.6e-25  Score=179.09  Aligned_cols=99  Identities=32%  Similarity=0.466  Sum_probs=86.6

Q ss_pred             eeecCCCC------------ccccCCCCCCcc-----h-hhhchhcCCccCcCc----eEEecCCCCC------------
Q psy4562          10 VRVVPDRH------------PFGHQPRSPLIN-----Y-QKFKIRIEDPPRRKD----MVFIGGAVLA------------   55 (112)
Q Consensus        10 ~~~~~~~~------------p~~f~p~~~gi~-----~-~~~sI~~c~~d~r~~----IvL~GGss~~------------   55 (112)
                      .+.+||..            +.+|+|+.+|++     + ..++|++||+|+|+.    |||+||+|+|            
T Consensus       240 ~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~  319 (376)
T PTZ00281        240 SYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT  319 (376)
T ss_pred             eEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHH
Confidence            57788865            358999776554     3 367999999999999    9999999999            


Q ss_pred             ----CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          56 ----EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        56 ----~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                          ...+++|.++++|++++|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus       320 ~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~-~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             HhCCCCcceEEecCCCCceeEEECcccccCcc-cHhhceeeHHHHhhhCchheeeecC
Confidence                3468999999999999999999999987 7999999999999999999999985

>PTZ00004 actin-2; Provisional

Probab=99.90  E-value=2.8e-24  Score=171.99  Aligned_cols=90  Identities=30%  Similarity=0.448  Sum_probs=79.8

Q ss_pred             cccCCCCCCcc------hh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCcee
Q psy4562          19 FGHQPRSPLIN------YQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDM   71 (112)
Q Consensus        19 ~~f~p~~~gi~------~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~   71 (112)
                      .+|+|+.+|.+      .. .+||++||+|+|+.    |||+||+|+|                ...+++|..+++|+++
T Consensus       262 ~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~  341 (378)
T PTZ00004        262 ALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYS  341 (378)
T ss_pred             cccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCcee
Confidence            48999855544      43 57999999999999    9999999999                3457999999999999


Q ss_pred             eeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          72 VFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        72 aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      +|+|||++|+++ .|+++||||+||+|+|+++++|||+
T Consensus       342 aW~Ggsilas~~-~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        342 VWIGGSILSSLP-TFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             EEECcccccCcc-chhhhEeEHHHHhhhCcceEEeecC
Confidence            999999999987 7999999999999999999999985

>PTZ00280 Actin-related protein 3; Provisional

Probab=99.88  E-value=1.3e-23  Score=169.64  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=78.6

Q ss_pred             cccCCCCC------Ccchh-hhchhcCCccCcCc----eEEecCCCCC---------------C----------------
Q psy4562          19 FGHQPRSP------LINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------E----------------   56 (112)
Q Consensus        19 ~~f~p~~~------gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~----------------   56 (112)
                      .+|+|+.+      ||++. .++|++||+|+|+.    |||+||+|+|               +                
T Consensus       278 ~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~  357 (414)
T PTZ00280        278 MFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKP  357 (414)
T ss_pred             cccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCC
Confidence            47888765      45443 67999999999999    9999999998               1                


Q ss_pred             -CceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccCC
Q psy4562          57 -KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNR  110 (112)
Q Consensus        57 -~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~  110 (112)
                       ..+++|.++++|++++|+|||+||+++ +|+++||||+||+|+|+++++++..+
T Consensus       358 ~~~~v~v~~~~~~~~~~W~GgSilas~~-~f~~~~itk~eY~E~G~~i~~~~~~~  411 (414)
T PTZ00280        358 IPIDVNVVSHPRQRYAVWYGGSMLASSP-EFEKVCHTKAEYDEYGPSICRYNNVF  411 (414)
T ss_pred             CCceEEEecCCccceeEEEChhhcccCc-chhhheEEHHHHhccChHheeecccc
Confidence             246889999999999999999999987 79999999999999999999987554

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=99.87  E-value=2.5e-23  Score=164.97  Aligned_cols=100  Identities=27%  Similarity=0.429  Sum_probs=83.3

Q ss_pred             eeeecCCCCc------------cccCCCCCCc------------chh-hhchhcCCccCcCc----eEEecCCCCC----
Q psy4562           9 AVRVVPDRHP------------FGHQPRSPLI------------NYQ-KFKIRIEDPPRRKD----MVFIGGAVLA----   55 (112)
Q Consensus         9 ~~~~~~~~~p------------~~f~p~~~gi------------~~~-~~sI~~c~~d~r~~----IvL~GGss~~----   55 (112)
                      ..+.+||.+.            .+|+|+..+.            .+. .++|++||+|+|+.    |||+||+|++    
T Consensus       248 ~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~  327 (393)
T PF00022_consen  248 KSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFK  327 (393)
T ss_dssp             EEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHH
T ss_pred             eecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchH
Confidence            3467787764            4788877654            333 57999999999998    9999999999    


Q ss_pred             ------------CCceEEEecCC-CCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          56 ------------EKFKIRIEDPP-RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        56 ------------~~~~v~V~~~~-~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                                  +..+++|..++ +|.+++|+|||++|++. .|+++||||+||+|+|+++++|||+
T Consensus       328 eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~-~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  328 ERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS-SFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             HHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG-GGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             HHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc-cccceeeeHHHHhCcCcceeeecCC
Confidence                        45689999998 99999999999999998 7999999999999999999999995

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>smart00268 ACTIN Actin

Probab=99.86  E-value=1.3e-22  Score=160.58  Aligned_cols=90  Identities=30%  Similarity=0.527  Sum_probs=79.3

Q ss_pred             cccCCCCCCcc-----hh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562          19 FGHQPRSPLIN-----YQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV   72 (112)
Q Consensus        19 ~~f~p~~~gi~-----~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a   72 (112)
                      .+|+|+.+|++     .. ..+|++||+|+|+.    |||+||+|++                ...+++|..+++|.+++
T Consensus       258 ~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~  337 (373)
T smart00268      258 ILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSV  337 (373)
T ss_pred             hcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccce
Confidence            57999765544     33 57899999999999    9999999998                24578899899999999


Q ss_pred             eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      |+|||++|++. .|+++||||+||+|+|+++++|||+
T Consensus       338 W~G~silas~~-~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      338 WLGGSILASLS-TFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             EeCcccccCcc-chhhhEEEHHHHhhhCcceEEeecC
Confidence            99999999987 7999999999999999999999985

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679|consensus

Probab=99.81  E-value=5.9e-21  Score=153.74  Aligned_cols=84  Identities=21%  Similarity=0.362  Sum_probs=73.0

Q ss_pred             CCCcchh-hhchhcCCccCcCc----eEEecCCCCC---------------CCceEEEecCC---CCceeeeecceeeec
Q psy4562          25 SPLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------EKFKIRIEDPP---RRKDMVFIGGAVLAE   81 (112)
Q Consensus        25 ~~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~~~~v~V~~~~---~~~~~aW~Ggsila~   81 (112)
                      .+|+..- ..||+.||.|+|..    |||+||||++               +..++++++..   +|++++|+||||||+
T Consensus       319 ~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS  398 (426)
T KOG0679|consen  319 MLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS  398 (426)
T ss_pred             ccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence            3455443 57999999999999    9999999998               45688988654   799999999999999


Q ss_pred             ccccccccceeHHHHhhcCc-hhhhhccC
Q psy4562          82 VMKDRDAFWMSNKEYQERGV-SVLSKLGN  109 (112)
Q Consensus        82 ~~~~f~~~~iTr~eYeE~G~-~iv~~k~~  109 (112)
                      +. +|+++||||+||||.|. +.+.+||.
T Consensus       399 Lg-tFqq~WiSKqEYEE~G~d~~ve~rc~  426 (426)
T KOG0679|consen  399 LG-TFQQLWISKQEYEEVGKDQLVERRCP  426 (426)
T ss_pred             cc-cHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence            98 79999999999999999 78888884

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.78  E-value=7.3e-20  Score=144.97  Aligned_cols=88  Identities=31%  Similarity=0.514  Sum_probs=75.1

Q ss_pred             cccCCCCC-----Ccchh-hhchhcCCccCcCc----eEEecCCCCC---------------C---CceEEEecCCCCce
Q psy4562          19 FGHQPRSP-----LINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------E---KFKIRIEDPPRRKD   70 (112)
Q Consensus        19 ~~f~p~~~-----gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~---~~~v~V~~~~~~~~   70 (112)
                      .+|+|+.+     ||... ..+|++||+|.|+.    |+|+||+|++               +   ..++++..+++|.+
T Consensus       256 ~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~  335 (371)
T cd00012         256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKY  335 (371)
T ss_pred             hcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccc
Confidence            47888655     44433 57899999999988    9999999998               1   34577778889999


Q ss_pred             eeeecceeeecccccccccceeHHHHhhcCchhhhhc
Q psy4562          71 MVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL  107 (112)
Q Consensus        71 ~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k  107 (112)
                      ++|+|||++|++. .|+++||||+||+|+|+++++||
T Consensus       336 ~aw~G~si~as~~-~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         336 SVWLGGSILASLS-TFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             cEEeCchhhcCch-hhhheEeeHHHHhhhCchhEecC
Confidence            9999999999987 79999999999999999999875

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0680|consensus

Probab=99.77  E-value=2e-19  Score=142.87  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562          19 FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV   72 (112)
Q Consensus        19 ~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a   72 (112)
                      .+|.|+++||+.+      .+||+.||..+|+.    ||++|||++|                .++.++|..|.++..-+
T Consensus       284 ilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~  363 (400)
T KOG0680|consen  284 ILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFA  363 (400)
T ss_pred             hhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceee
Confidence            3799999988875      47999999999999    9999999999                46789999999999999


Q ss_pred             eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      |.||+.++... .|..+||||+||+|+|++++.+|++
T Consensus       364 W~~g~~~~~~~-~~~~~~itR~dy~E~G~~~~~~~~~  399 (400)
T KOG0680|consen  364 WEGGSEFAKTD-SFEKAVITREDYEEHGPSWCTKKRF  399 (400)
T ss_pred             ehhccccccCc-chhcceecHhhHhhcCchhhhhhcc
Confidence            99999999865 7999999999999999999998865

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.76  E-value=2.1e-19  Score=147.76  Aligned_cols=83  Identities=24%  Similarity=0.426  Sum_probs=74.0

Q ss_pred             CCcchh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceeeeecceeeecccc
Q psy4562          26 PLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMVFIGGAVLAEVMK   84 (112)
Q Consensus        26 ~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~aW~Ggsila~~~~   84 (112)
                      .||.++ .++|++||.+.|+.    |||+||+|++                ...+++|..+++|.+.+|+|||+||++. 
T Consensus       341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~-  419 (444)
T COG5277         341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLE-  419 (444)
T ss_pred             cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcccc-
Confidence            345554 47999999999999    9999999998                3467999999999999999999999976 


Q ss_pred             cccccceeHHHHhhcCchhhhhccC
Q psy4562          85 DRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        85 ~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      .|+++||||+||+|+|+++++++++
T Consensus       420 ~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         420 TFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             chhheEeeHHHhhhhhhHHHhhccC
Confidence            7999999999999999999998874

>KOG0677|consensus

Probab=99.70  E-value=6.4e-18  Score=132.09  Aligned_cols=102  Identities=48%  Similarity=0.754  Sum_probs=87.2

Q ss_pred             ccceeeecCCCCc------------cccCCCCCCcchh------hhchhcCCccCcCc----eEEecCCCCC--------
Q psy4562           6 KWSAVRVVPDRHP------------FGHQPRSPLINYQ------KFKIRIEDPPRRKD----MVFIGGAVLA--------   55 (112)
Q Consensus         6 ~~~~~~~~~~~~p------------~~f~p~~~gi~~~------~~sI~~c~~d~r~~----IvL~GGss~~--------   55 (112)
                      --.+.|-+||.--            -+|||..+.++.+      .++|+..|+|+|.+    |||+||+||+        
T Consensus       236 vLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLE  315 (389)
T KOG0677|consen  236 VLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLE  315 (389)
T ss_pred             eeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHH
Confidence            3456677787653            3799988776654      57999999999999    9999999998        


Q ss_pred             -------------------CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhc
Q psy4562          56 -------------------EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKL  107 (112)
Q Consensus        56 -------------------~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k  107 (112)
                                         +.+++++.+||.|.+.+++||++||.+..+-+++|+||+||+|.|.+.+.+.
T Consensus       316 kElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  316 KELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             HHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence                               4678999999999999999999999876677899999999999999998874

>KOG0678|consensus

Probab=99.49  E-value=7.3e-15  Score=117.28  Aligned_cols=92  Identities=18%  Similarity=0.251  Sum_probs=73.2

Q ss_pred             CCccccCCCCCC-cchh-hhchhcCCccCcCc----eEEecCCCCC------------------------------CCce
Q psy4562          16 RHPFGHQPRSPL-INYQ-KFKIRIEDPPRRKD----MVFIGGAVLA------------------------------EKFK   59 (112)
Q Consensus        16 ~~p~~f~p~~~g-i~~~-~~sI~~c~~d~r~~----IvL~GGss~~------------------------------~~~~   59 (112)
                      +||....|+++- +... +..|++||+|.|+.    |+|+||+|||                              +..+
T Consensus       282 f~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vd  361 (415)
T KOG0678|consen  282 FHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVD  361 (415)
T ss_pred             cCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCce
Confidence            344444444332 2222 57999999999998    9999999998                              2335


Q ss_pred             EEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhcc
Q psy4562          60 IRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG  108 (112)
Q Consensus        60 v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~  108 (112)
                      |+|......++++|.|||+|++.+ .|-..+-||++|||+|++|++..-
T Consensus       362 vqvish~~qr~avwfggs~lastp-ef~~~~~tk~~yee~g~si~r~~~  409 (415)
T KOG0678|consen  362 VQVLSHLLQRTAVWFGGSKLASTP-EFVPACHTKEDYEEYGPSICRTNP  409 (415)
T ss_pred             eehhhhhhhhcceeccCccccCCc-ccccccCcchhhhhhChhhhhcCc
Confidence            788888888999999999999977 688899999999999999998743

>KOG0681|consensus

Probab=99.49  E-value=1e-14  Score=121.86  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             ecCCCCc-cccCCCCCCcchhh------hchhcCCccCcCc----eEEecCCCCCC----------------CceEEEec
Q psy4562          12 VVPDRHP-FGHQPRSPLINYQK------FKIRIEDPPRRKD----MVFIGGAVLAE----------------KFKIRIED   64 (112)
Q Consensus        12 ~~~~~~p-~~f~p~~~gi~~~~------~sI~~c~~d~r~~----IvL~GGss~~~----------------~~~v~V~~   64 (112)
                      |+-.|=| ++|||+.+|++.++      ..+.+-|.|.+..    |+|+||+++++                +.+|+|..
T Consensus       517 VEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r  596 (645)
T KOG0681|consen  517 VERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR  596 (645)
T ss_pred             ceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEe
Confidence            4445556 48999999999874      4667788777664    99999999992                44689999


Q ss_pred             CCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          65 PPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        65 ~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      ..+|..+||.||+.+|... +|...++||+||+|+|+.+++..+.
T Consensus       597 asdP~LDAW~GA~~~a~n~-~f~~~~~Tr~dy~E~G~e~~kEh~~  640 (645)
T KOG0681|consen  597 ASDPVLDAWRGASAWAANP-TFTLTQITRKDYEEKGEEYLKEHVA  640 (645)
T ss_pred             cCCcchhhhhhhHHhhcCc-ccchhhhhHHhhhhhhHHHHHHHhh
Confidence            9999999999999999865 7999999999999999999987664

>KOG0797|consensus

Probab=98.53  E-value=2.2e-08  Score=83.95  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=61.8

Q ss_pred             hchhcCCccCcCc-----eEEecCCCCC--------------------CCceEEEecCC---CCceeeeecceeeecccc
Q psy4562          33 FKIRIEDPPRRKD-----MVFIGGAVLA--------------------EKFKIRIEDPP---RRKDMVFIGGAVLAEVMK   84 (112)
Q Consensus        33 ~sI~~c~~d~r~~-----IvL~GGss~~--------------------~~~~v~V~~~~---~~~~~aW~Ggsila~~~~   84 (112)
                      .||..|-.|.-+.     |.++||..+|                    ....|.|+.++   ++++-+|.||+|++.+. 
T Consensus       512 ~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~-  590 (618)
T KOG0797|consen  512 SSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILD-  590 (618)
T ss_pred             HhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHH-
Confidence            3555554433332     9999999998                    12347888766   78999999999999986 


Q ss_pred             cccccceeHHHHhhcCchhhhhccCCC
Q psy4562          85 DRDAFWMSNKEYQERGVSVLSKLGNRA  111 (112)
Q Consensus        85 ~f~~~~iTr~eYeE~G~~iv~~k~~~~  111 (112)
                      .-.+.||++.||+-+|.++++.||.|+
T Consensus       591 ~~~ELwI~~~dW~~~G~RvL~~k~~f~  617 (618)
T KOG0797|consen  591 FVRELWIENSDWQVHGVRVLQYKKYFS  617 (618)
T ss_pred             HHHHHheechhHhhhhhhhhhhccccc
Confidence            568999999999999999999998764

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=94.43  E-value=0.0033  Score=49.44  Aligned_cols=50  Identities=20%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ..+++.|+.+.+.+     |||+||+|+++        .+.+.|....+|..++=.|+++++.
T Consensus       264 ~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~  326 (333)
T TIGR00904       264 KRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALE  326 (333)
T ss_pred             HHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence            46788899877643     99999999992        3345555555666666678877653

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=93.87  E-value=0.0043  Score=48.60  Aligned_cols=50  Identities=20%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ..+|++|+.+.+++     |||+||+|+++        .+.++|....+|..++=.|+++++.
T Consensus       261 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~  323 (334)
T PRK13927        261 KVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALE  323 (334)
T ss_pred             HHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHh
Confidence            46788999877653     99999999992        2333344444445555568777654

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=93.71  E-value=0.0044  Score=48.40  Aligned_cols=50  Identities=20%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ..+|++|+.+.+.+     |||+||+|+++        .+.+.+..+.++..++=+|+++++.
T Consensus       265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~  327 (335)
T PRK13930        265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALE  327 (335)
T ss_pred             HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHh
Confidence            46888999887653     99999999992        2334444444555555568887765

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=93.40  E-value=0.0086  Score=47.43  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=32.9

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceee
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVL   79 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsil   79 (112)
                      ..+|++|+++.++.     |||+||+|+++        .+.+.|....+|..++=+|+...
T Consensus       263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence            46889999888754     99999999992        23344444455666655666654

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=92.73  E-value=0.0065  Score=48.70  Aligned_cols=50  Identities=24%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCC--------CCceEEEecCCCCceeeeecceeeec
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ...+.+||+++..+     |+|+||.+++        +.+.+.|...++|.+++=.|+..+.+
T Consensus       258 ~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~  320 (326)
T PF06723_consen  258 KEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE  320 (326)
T ss_dssp             HHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence            35778899998877     9999999999        34456666666777777777765543

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=91.94  E-value=0.015  Score=45.87  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             hhchhcCCccCcCc-----eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          32 KFKIRIEDPPRRKD-----MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        32 ~~sI~~c~~d~r~~-----IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ..++.+|+.+.++.     |+|+||+|+++        .+.+.|....+|..++=+|+++.+.
T Consensus       260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~  322 (336)
T PRK13928        260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLE  322 (336)
T ss_pred             HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHh
Confidence            46788898776643     99999999982        2334444445667777788888764

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=81.12  E-value=0.56  Score=35.61  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=24.5

Q ss_pred             eEEecCCCCC--------CCceEEEecCCCCceeeeeccee
Q psy4562          46 MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAV   78 (112)
Q Consensus        46 IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsi   78 (112)
                      |+|+||++++        +.+.+.|..+.+|.+++=+|+++
T Consensus       198 v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       198 LYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             EEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence            9999999998        23445566677888887777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		2e-19
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		2e-19
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		6e-05
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		6e-05
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		6e-05
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		7e-05
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		7e-05
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		7e-05
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		7e-05
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		7e-05
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		7e-05
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		8e-05
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		8e-05
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		9e-05
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		9e-05
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		9e-05
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		9e-05
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		9e-05
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		1e-04
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		2e-04
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		2e-04
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		2e-04
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		2e-04
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		2e-04
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		2e-04
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		2e-04
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		2e-04
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		2e-04
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		2e-04
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		2e-04
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		2e-04
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		2e-04
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		2e-04
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		2e-04
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		2e-04
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		2e-04
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		2e-04
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		2e-04
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		2e-04

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 372

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 372

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 318 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 371

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 372

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 318 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 371

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 372

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 372

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 318 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDEAGPSIVHR 371

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++
Sbjct: 314 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIV 365

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 372

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S +EY E G S++ +
Sbjct: 312 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHR 365

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S  EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKHEYDESGPSIVHR 372

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 315 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 368

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 321 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 374

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 321 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 374

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 373

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 303 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 356

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     K++I  PP RK  V+IGG++LA +   +   W+S +EY E G S++
Sbjct: 319 ALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQ-MWISKQEYDESGPSIV 370

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 315 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 368

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 372

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 314 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 367

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     K++I  PP RK  V+IGG++LA +   +   W+S +EY E G S++
Sbjct: 314 ALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQ-MWISKQEYDESGPSIV 365

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 373

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 372

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     K++I  PP RK  V+IGG++LA +   +   W+S +EY E G S++
Sbjct: 314 ALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQ-MWISKQEYDESGPSIV 365

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     K++I  PP RK  V+IGG++LA +   +   W+S +EY E G S++
Sbjct: 319 ALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQ-MWISKQEYDESGPSIV 370

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 372

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 373

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
           A+     KI+I  PP RK  V+IGG++LA  +      W+S  EY E G S++ +
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKHEYDESGPSIVHR 372

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++
Sbjct: 319 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 370

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++
Sbjct: 314 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 365

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++
Sbjct: 313 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 364

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	4e-15
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	3e-13
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	4e-13
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	2e-12
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	2e-11

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLG 108
           KFKIRIEDPPRRK MVF+GGAVLA++MKD+D FWM+ +EYQE+GV VL KLG
Sbjct: 339 KFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 63.3 bits (154), Expect = 3e-13
 Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 41  PRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERG 100
             R     +     +    + +    R+++ V+ GG++LA+   +  ++  +  +Y+E G
Sbjct: 355 DERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ-TPEFGSYCHTKADYEEYG 413

Query: 101 VSVLSK 106
            S+  +
Sbjct: 414 ASIARR 419

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 36  RIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKE 95
           R  D   +      GG +  +   +++     ++  V+ GG++LA    +      + K+
Sbjct: 341 RTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS-TPEFYQVCHTKKD 399

Query: 96  YQERGVSVLSK 106
           Y+E G S+   
Sbjct: 400 YEEIGPSICRH 410

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 57  KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSK 106
             KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++ +
Sbjct: 324 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIVHR 372

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 54  LAEKFKIRIEDPP---RRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           +    K RI        R+   ++GG++L   +      W+  KEY+E GV  L
Sbjct: 440 ILPSLKFRILTTGHTIERQYQSWLGGSILTS-LGTFHQLWVGKKEYEEVGVERL 492

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	99.91
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.9
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	99.88
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	99.86
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.84
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.84
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.52
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	96.98
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	95.69
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	94.94
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	94.63
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	92.45
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	92.0
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	83.75

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4.6e-26  Score=184.07  Aligned_cols=92  Identities=18%  Similarity=0.331  Sum_probs=79.3

Q ss_pred             cccCCCCCCcc------hh-hhchhcCCccCcCc----eEEecCCCCC---------------C---------------C
Q psy4562          19 FGHQPRSPLIN------YQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------E---------------K   57 (112)
Q Consensus        19 ~~f~p~~~gi~------~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~---------------~   57 (112)
                      .+|+|+.+|++      +. .++|++||+|+|+.    |||+||+|||               +               .
T Consensus       292 ~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~  371 (427)
T 3dwl_A          292 IFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGG  371 (427)
T ss_dssp             GGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------C
T ss_pred             hccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCc
Confidence            37888655544      33 57999999999999    9999999998               1               2


Q ss_pred             ceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccCCC
Q psy4562          58 FKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA  111 (112)
Q Consensus        58 ~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~~  111 (112)
                      ++|+|.++++|+|++|+|||+||+++ +|+++||||+||+|+|++++|+++.|.
T Consensus       372 ~~vkv~~~~~r~~s~WiGGSilasl~-~f~~~witk~EYeE~G~~iv~~~~~~~  424 (427)
T 3dwl_A          372 VDVNVISHKRQRNAVWFGGSLLAQTP-EFGSYCHTKADYEEYGASIARRYQIFG  424 (427)
T ss_dssp             CCCCEECCTTCTTHHHHHHHHHHHST-THHHHSEEHHHHHHSCGGGGSCCCC--
T ss_pred             eeEEEecCCccccceecCceeecccc-chhheeEEHHHHhhhChHhheeccccc
Confidence            46889999999999999999999987 799999999999999999999998764

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.2e-25  Score=185.27  Aligned_cols=90  Identities=24%  Similarity=0.335  Sum_probs=78.8

Q ss_pred             ccccCCCCCCcchh-hhchhcCCccCcCc----eEEecCCCCC---------------CCceEEEecC---CCCceeeee
Q psy4562          18 PFGHQPRSPLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA---------------EKFKIRIEDP---PRRKDMVFI   74 (112)
Q Consensus        18 p~~f~p~~~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~---------------~~~~v~V~~~---~~~~~~aW~   74 (112)
                      +.....+..||++. .+||++||+|+|+.    |||+||+|||               +.++|+|.++   ++|.+++|+
T Consensus       384 ~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p~~~i~v~~~~~~~er~~s~Wi  463 (498)
T 3qb0_A          384 PPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTIERQYQSWL  463 (498)
T ss_dssp             -----CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSTTSCCCEECCSCTGGGGSHHHH
T ss_pred             cccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCCCCeeEEEcCCCCCccCccEEc
Confidence            33344578899886 67999999999999    9999999999               4668999988   789999999


Q ss_pred             cceeeecccccccccceeHHHHhhcCc-hhhhhcc
Q psy4562          75 GGAVLAEVMKDRDAFWMSNKEYQERGV-SVLSKLG  108 (112)
Q Consensus        75 Ggsila~~~~~f~~~~iTr~eYeE~G~-~iv~~k~  108 (112)
                      |||+||+++ +|+++||||+||+|.|+ +++++||
T Consensus       464 Ggsilasl~-~f~~~witk~EY~E~G~~~iv~~kc  497 (498)
T 3qb0_A          464 GGSILTSLG-TFHQLWVGKKEYEEVGVERLLNDRF  497 (498)
T ss_dssp             HHHHHHTCH-HHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred             ccEEEecCc-chhceEEEHHHHhhhCcHhhccccC
Confidence            999999997 79999999999999999 9999998

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.8e-24  Score=177.90  Aligned_cols=91  Identities=19%  Similarity=0.333  Sum_probs=79.6

Q ss_pred             ccCCCCCCcchh-hhchhcCCc-cCcCc----eEEecCCCCCC---------------------CceEEEecCC---CCc
Q psy4562          20 GHQPRSPLINYQ-KFKIRIEDP-PRRKD----MVFIGGAVLAE---------------------KFKIRIEDPP---RRK   69 (112)
Q Consensus        20 ~f~p~~~gi~~~-~~sI~~c~~-d~r~~----IvL~GGss~~~---------------------~~~v~V~~~~---~~~   69 (112)
                      .|+.+..||+.+ .+||++||. |+|+.    |||+||+|+|+                     ..+|+|++++   +|.
T Consensus       472 ~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~  551 (593)
T 4fo0_A          472 LFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPR  551 (593)
T ss_dssp             HHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTT
T ss_pred             cccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCc
Confidence            345567789886 579999994 99998    99999999991                     2358999887   799


Q ss_pred             eeeeecceeeecccccccccceeHHHHhhcCchhhhhccCCC
Q psy4562          70 DMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA  111 (112)
Q Consensus        70 ~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~~  111 (112)
                      +++|+|||+||++. .|+++||||+||+|+|+++|++||+|.
T Consensus       552 ~~aW~GgSilasL~-~f~~~wItk~EYeE~G~~il~~kc~f~  592 (593)
T 4fo0_A          552 LIAWKGGAVLACLD-TTQELWIYQREWQRFGVRMLRERAAFV  592 (593)
T ss_dssp             THHHHHHHHHHHCG-GGGGTCEEHHHHHHHTTHHHHHHCSSC
T ss_pred             eeeehhhHHHhcCc-cHHHeeECHHHHHhhCcHHHhhcCCcC
Confidence            99999999999997 799999999999999999999999874

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=99.86  E-value=4.6e-23  Score=162.12  Aligned_cols=90  Identities=33%  Similarity=0.474  Sum_probs=74.6

Q ss_pred             cccCCCC-----CCcchh-hhchhcCCccCcCc----eEEecCCCCC----------------CCceEEEecCCCCceee
Q psy4562          19 FGHQPRS-----PLINYQ-KFKIRIEDPPRRKD----MVFIGGAVLA----------------EKFKIRIEDPPRRKDMV   72 (112)
Q Consensus        19 ~~f~p~~-----~gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~----------------~~~~v~V~~~~~~~~~a   72 (112)
                      .+|+|+.     .||.+. .++|++||+|+|+.    |||+||+|++                ...+++|..+++|.+++
T Consensus       260 ~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~  339 (375)
T 2fxu_A          260 TLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV  339 (375)
T ss_dssp             TTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHH
T ss_pred             hhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccE
Confidence            3677764     455543 57999999999987    9999999999                23458888999999999


Q ss_pred             eecceeeecccccccccceeHHHHhhcCchhhhhccC
Q psy4562          73 FIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGN  109 (112)
Q Consensus        73 W~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~  109 (112)
                      |+||+++|++. .|+++||||+||+|+|++++++||+
T Consensus       340 w~G~si~a~l~-~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          340 WIGGSILASLS-TFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             HHHHHHHHHCG-GGGGGSEEHHHHHHHCGGGGC----
T ss_pred             EcchHHhhCcc-cHhhceeeHHHHhhhChHHHhhhcc
Confidence            99999999987 7999999999999999999999985

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.84  E-value=1.5e-22  Score=160.61  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             ccccCCCCCC------cchh-hhchhcCCccCcCc----eEEecCCCCCC------------------------------
Q psy4562          18 PFGHQPRSPL------INYQ-KFKIRIEDPPRRKD----MVFIGGAVLAE------------------------------   56 (112)
Q Consensus        18 p~~f~p~~~g------i~~~-~~sI~~c~~d~r~~----IvL~GGss~~~------------------------------   56 (112)
                      ..+|+|+.+|      |... .++|++||.|+|+.    |||+||+|+++                              
T Consensus       280 E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~  359 (418)
T 1k8k_A          280 EIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLK  359 (418)
T ss_dssp             HTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred             HhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCC
Confidence            3578887654      4333 57999999999998    99999999981                              


Q ss_pred             --CceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhhhccCC
Q psy4562          57 --KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNR  110 (112)
Q Consensus        57 --~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~  110 (112)
                        ..+++|.++++|.+++|+|||++|++. .|+++||||+||+|+|++++++||.|
T Consensus       360 p~~~~v~v~~~~~~~~~~w~Ggsilasl~-~f~~~~itk~ey~e~G~~~~~~~~~f  414 (418)
T 1k8k_A          360 PKPIDVQVITHHMQRYAVWFGGSMLASTP-EFYQVCHTKKDYEEIGPSICRHNPVF  414 (418)
T ss_dssp             CCCCCCCEECCTTCTTHHHHHHHHHTTSH-HHHHHSEEHHHHHHHCGGGGGCCCCC
T ss_pred             CCceeEEEeCCCccccceeHhHHHHHcCc-cHhheEEEHHHHhhhCHHHHhhhccc
Confidence              135788999999999999999999987 79999999999999999999998765

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.84  E-value=3.1e-22  Score=158.87  Aligned_cols=97  Identities=46%  Similarity=0.744  Sum_probs=38.5

Q ss_pred             eeeecCCCCc------------cccCCCCCC-----cchh-hhchhcCCccCcCc----eEEecCCCCCC----------
Q psy4562           9 AVRVVPDRHP------------FGHQPRSPL-----INYQ-KFKIRIEDPPRRKD----MVFIGGAVLAE----------   56 (112)
Q Consensus         9 ~~~~~~~~~p------------~~f~p~~~g-----i~~~-~~sI~~c~~d~r~~----IvL~GGss~~~----------   56 (112)
                      ..+.+||.+.            .+|+|+.+|     |.+. .++|++||+|+|+.    |||+||+|+|+          
T Consensus       242 ~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el  321 (394)
T 1k8k_B          242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL  321 (394)
T ss_dssp             EEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred             eEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHH
Confidence            4567888542            468887554     4443 67999999999988    99999999991          


Q ss_pred             -----------------CceEEEecCCCCceeeeecceeeeccccccc-ccceeHHHHhhcCchhhhh
Q psy4562          57 -----------------KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRD-AFWMSNKEYQERGVSVLSK  106 (112)
Q Consensus        57 -----------------~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~-~~~iTr~eYeE~G~~iv~~  106 (112)
                                       .++++|.++++|.+++|+|||++|+++ .|+ ++||||+||+|+|++++++
T Consensus       322 ~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~-~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          322 KQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIM-KDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             HHHHHHHTCSSCCCTTCCCCC-----------------------------------------------
T ss_pred             HHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCc-CCccceeecHHHHhhhCHHHHHh
Confidence                             126888889999999999999999987 799 9999999999999999988

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.52  E-value=8.5e-16  Score=130.00  Aligned_cols=52  Identities=21%  Similarity=0.413  Sum_probs=48.3

Q ss_pred             eEEEecCCCC---ceeeeecceeeecccccccccceeHHHHhhcCchhhhhccCCC
Q psy4562          59 KIRIEDPPRR---KDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLSKLGNRA  111 (112)
Q Consensus        59 ~v~V~~~~~~---~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~~k~~~~  111 (112)
                      +|+|.+++++   ++++|+|||+||++. .|+++||||+||+|.|++++++||+|.
T Consensus       600 ~i~V~~~p~~~d~~~~~W~GgSvla~l~-~f~e~wIt~~Eyde~G~~il~~k~~f~  654 (655)
T 4am6_A          600 PVSIIPPPRDMNPALIIWKGASVLAQIK-LVEELFITNSDWDVHGSRILQYKCIFT  654 (655)
T ss_dssp             CCCEECCCTTSCGGGHHHHHHHHHTTSH-HHHHHCEEHHHHHHHGGGGGGTSCSSC
T ss_pred             eeEEeCCccccCcceeEEecceeeeecc-cHhheeecHHHHhhhcchheEeccccC
Confidence            3789999987   899999999999997 799999999999999999999999875

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=96.98  E-value=2e-05  Score=60.14  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             hhchhcCCccCcC----c-eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeeccccccc
Q psy4562          32 KFKIRIEDPPRRK----D-MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRD   87 (112)
Q Consensus        32 ~~sI~~c~~d~r~----~-IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~   87 (112)
                      ..+|.+|+.+.++    . |+|+||+|+++        .+..+|..+.+|.+++|+|+++++...+.|+
T Consensus       262 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          262 RTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             HHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred             HHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChHHHH
Confidence            4578888876542    2 99999999983        2234455677889999999999987422454

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=95.69  E-value=0.0007  Score=52.17  Aligned_cols=51  Identities=24%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             hhchhcCCccCcC-c-eEEecCCCCC--------CCceEEEecCCCCceeeeecceeeecc
Q psy4562          32 KFKIRIEDPPRRK-D-MVFIGGAVLA--------EKFKIRIEDPPRRKDMVFIGGAVLAEV   82 (112)
Q Consensus        32 ~~sI~~c~~d~r~-~-IvL~GGss~~--------~~~~v~V~~~~~~~~~aW~Ggsila~~   82 (112)
                      ..+|.+|+..... . |+|+||+|++        +.+...+..+.+|.+++|+|++++|.+
T Consensus       321 ~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~  381 (383)
T 1dkg_D          321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGV  381 (383)
T ss_dssp             HHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHh
Confidence            3567777643211 2 9999999998        223345667788999999999998763

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=94.94  E-value=0.0016  Score=47.82  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             hchhcCC-ccCcCceEEecCCCCCC--------CceEEEecCCCCceeeeecceeee
Q psy4562          33 FKIRIED-PPRRKDMVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLA   80 (112)
Q Consensus        33 ~sI~~c~-~d~r~~IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila   80 (112)
                      ..+.+++ ++   .|+|+||+++++        .+.+.|..+.++.+++++|++++|
T Consensus       219 ~~l~~~~~~~---~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          219 EVIKNYDQTL---PVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             HHTTTSCSSC---CEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred             HHHHhcCCCC---EEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence            4556665 21   399999999983        334566778889999999998754

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=92.45  E-value=0.0056  Score=49.56  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             hchhcCCccCcC-c-eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          33 FKIRIEDPPRRK-D-MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        33 ~sI~~c~~d~r~-~-IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      .+|..++.+... . |+|+||+|.++        .+...+..+.+|..++|+|++++|.
T Consensus       291 ~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          291 QALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGG  349 (509)
T ss_dssp             HHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHH
T ss_pred             HHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHH
Confidence            456666533111 1 99999999982        2233455677889999999999885

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=92.00  E-value=0.006  Score=47.19  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             hchhcCCccCcCc--eEEecCCCCC--------CCc-eEEEecCCCCceeeeecceeeecc
Q psy4562          33 FKIRIEDPPRRKD--MVFIGGAVLA--------EKF-KIRIEDPPRRKDMVFIGGAVLAEV   82 (112)
Q Consensus        33 ~sI~~c~~d~r~~--IvL~GGss~~--------~~~-~v~V~~~~~~~~~aW~Ggsila~~   82 (112)
                      ..|..+..+...-  |+|+||+|.+        +.+ ..+|..+.+|..++++|++++|.+
T Consensus       340 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~  400 (404)
T 3i33_A          340 KALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI  400 (404)
T ss_dssp             HHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            4555554432222  9999999998        223 345667778899999999988753

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=83.75  E-value=0.096  Score=43.38  Aligned_cols=62  Identities=16%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             ccCCCCCCcchh-hhchhcCCccCcC-c-eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          20 GHQPRSPLINYQ-KFKIRIEDPPRRK-D-MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        20 ~f~p~~~gi~~~-~~sI~~c~~d~r~-~-IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      ++.|-.-.+-.. ..+|..+...... . |+|+||+|.++        .+...+....+|..+++.|+++.|.
T Consensus       308 l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~  380 (605)
T 2kho_A          308 LVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             TCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHH
Confidence            344443333222 3455555432111 2 99999999982        2223455667788999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	3e-10
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	8e-08

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 36  RIEDPPRRKDMVFIGGAVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKE 95
           R  D   +      GG +  +   +++     ++  V+ GG++LA    +      + K+
Sbjct: 181 RTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS-TPEFYQVCHTKKD 239

Query: 96  YQERGVSVL 104
           Y+E G S+ 
Sbjct: 240 YEEIGPSIC 248

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (109), Expect = 8e-08
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 52  AVLAEKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVL 104
           A+     KI+I  PP RK  V+IGG++LA  +      W++ +EY E G S++
Sbjct: 173 ALAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWITKQEYDEAGPSIV 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.91
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	98.21
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	93.48

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.2e-27  Score=171.37  Aligned_cols=96  Identities=32%  Similarity=0.469  Sum_probs=83.2

Q ss_pred             eeeecCCCCc------------cccCCCCCCcc-----hh-hhchhcCCccCcCc----eEEecCCCCC-----------
Q psy4562           9 AVRVVPDRHP------------FGHQPRSPLIN-----YQ-KFKIRIEDPPRRKD----MVFIGGAVLA-----------   55 (112)
Q Consensus         9 ~~~~~~~~~p------------~~f~p~~~gi~-----~~-~~sI~~c~~d~r~~----IvL~GGss~~-----------   55 (112)
                      ..+.+||.+-            .+|+|+.+|++     +. .+||.+||+|+|+.    |||+||+|+|           
T Consensus        92 ~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El  171 (225)
T d2fxua2          92 KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI  171 (225)
T ss_dssp             EEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHH
T ss_pred             eeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHH
Confidence            4577888874            47888765554     43 57999999999999    9999999998           


Q ss_pred             -----CCceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhh
Q psy4562          56 -----EKFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLS  105 (112)
Q Consensus        56 -----~~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~  105 (112)
                           ...+++|..+++|++++|+|||++|++. .|+++||||+||+|+|++++|
T Consensus       172 ~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~-~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         172 TALAPSTMKIKIIAPPERKYSVWIGGSILASLS-TFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCG-GGGGGSEEHHHHHHHCGGGGC
T ss_pred             HHhhccccceEEecCCCCCeeEEeCHhhhhcCc-cHhhEEEEHHHHHhhCccccC
Confidence                 3557899999999999999999999987 799999999999999999986

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.7e-26  Score=170.17  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=76.0

Q ss_pred             ccCCCCC------Ccchh-hhchhcCCccCcCc----eEEecCCCCCC--------------------------------
Q psy4562          20 GHQPRSP------LINYQ-KFKIRIEDPPRRKD----MVFIGGAVLAE--------------------------------   56 (112)
Q Consensus        20 ~f~p~~~------gi~~~-~~sI~~c~~d~r~~----IvL~GGss~~~--------------------------------   56 (112)
                      +|+|+.+      ||+.. .++|++||+|+|+.    |+|+||+|+++                                
T Consensus       122 lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~  201 (258)
T d1k8ka2         122 FFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPK  201 (258)
T ss_dssp             TTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCC
T ss_pred             HhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCC
Confidence            5666544      44443 57999999999998    99999999981                                


Q ss_pred             CceEEEecCCCCceeeeecceeeecccccccccceeHHHHhhcCchhhh-hccCC
Q psy4562          57 KFKIRIEDPPRRKDMVFIGGAVLAEVMKDRDAFWMSNKEYQERGVSVLS-KLGNR  110 (112)
Q Consensus        57 ~~~v~V~~~~~~~~~aW~Ggsila~~~~~f~~~~iTr~eYeE~G~~iv~-~k~~~  110 (112)
                      .++++|.++++|++++|+|||++|++. +|+++||||+||+|+|++||+ ||||.
T Consensus       202 ~~~i~v~~~~~r~~s~W~Ggsila~l~-~f~~~~Itk~eY~E~G~~iv~~rk~f~  255 (258)
T d1k8ka2         202 PIDVQVITHHMQRYAVWFGGSMLASTP-EFYQVCHTKKDYEEIGPSICRHNPVFG  255 (258)
T ss_dssp             CCCCCEECCTTCTTHHHHHHHHHTTSH-HHHHHSEEHHHHHHHCGGGGGCCCCCS
T ss_pred             CceeeEecCCCCCceehHHHHHHHcCc-cHHhheecHHHHhhhChHHHhcCCCcC
Confidence            235789999999999999999999997 799999999999999999995 56664

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=1.8e-07  Score=65.54  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             ccCCCCCC-----cchh-hhchhcCCccCcCc----eEEecCCCCCCCc
Q psy4562          20 GHQPRSPL-----INYQ-KFKIRIEDPPRRKD----MVFIGGAVLAEKF   58 (112)
Q Consensus        20 ~f~p~~~g-----i~~~-~~sI~~c~~d~r~~----IvL~GGss~~~~~   58 (112)
                      +|+|+..|     +... .+||++||+|+|+.    |||+||+|+++++
T Consensus       112 lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf  160 (190)
T d1k8kb1         112 LFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGL  160 (190)
T ss_dssp             GTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTH
T ss_pred             ccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCH
Confidence            56665544     4443 57999999999999    9999999999554

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.48  E-value=0.0024  Score=42.44  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             eEEecCCCCCC--------CceEEEecCCCCceeeeecceeeec
Q psy4562          46 MVFIGGAVLAE--------KFKIRIEDPPRRKDMVFIGGAVLAE   81 (112)
Q Consensus        46 IvL~GGss~~~--------~~~v~V~~~~~~~~~aW~Ggsila~   81 (112)
                      |+|+||+|.++        .+...|....+|..++-+||+++++
T Consensus       141 IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         141 IFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             EEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGG
T ss_pred             eEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHH
Confidence            99999999993        2233455556778999999998775