Psyllid ID: psy4565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MKLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEccccccccccHHHHHHcccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccEcEEEEccccEEEEcEEccEEcccccEEEcccHcHHHHHHHHc
Coil and Loop (DISEMBL)
mkldlekvcpvqtyvaygtdykpslvitfsgdgvthicpvyeqfalphlTRRLDIAGESHITRYLLS
Flexible Loop (DISEMBL)
MKLDLEKVCPVQTyvaygtdykpSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Low Complexity Region (SEG)
MKLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Disordered region (IsUnstruct)
*****EKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL**
Disordered Region (DISOPRED)
******KVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Disordered Region (DISEMBL)
MKLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Disordered Region (DISPRO)
*KLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLDLEKVCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
P45888	394	Actin-related protein 2 O	yes	N/A	0.626	0.106	0.790	1e-12
Q5R4K0	394	Actin-related protein 2 O	yes	N/A	0.597	0.101	0.780	5e-12
Q56A35	394	Actin-related protein 2-B	yes	N/A	0.597	0.101	0.780	7e-12
Q7SXW6	394	Actin-related protein 2-A	yes	N/A	0.597	0.101	0.780	7e-12
P61161	394	Actin-related protein 2 O	yes	N/A	0.597	0.101	0.780	7e-12
P61160	394	Actin-related protein 2 O	yes	N/A	0.597	0.101	0.780	7e-12
A7MB62	394	Actin-related protein 2 O	yes	N/A	0.597	0.101	0.780	7e-12
P53488	394	Actin-related protein 2 O	yes	N/A	0.597	0.101	0.780	8e-12
Q7ZXV3	394	Actin-related protein 2-B	N/A	N/A	0.597	0.101	0.780	8e-12
Q7ZTP2	394	Actin-related protein 2-A	N/A	N/A	0.597	0.101	0.780	8e-12

>sp|P45888|ARP2_DROME Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.
Drosophila melanogaster (taxid: 7227)

>sp|Q5R4K0|ARP2_PONAB Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEDFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Pongo abelii (taxid: 9601)

>sp|Q56A35|ARP2B_DANRE Actin-related protein 2-B OS=Danio rerio GN=actr2b PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Danio rerio (taxid: 7955)

>sp|Q7SXW6|ARP2A_DANRE Actin-related protein 2-A OS=Danio rerio GN=actr2a PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Danio rerio (taxid: 7955)

>sp|P61161|ARP2_MOUSE Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Mus musculus (taxid: 10090)

>sp|P61160|ARP2_HUMAN Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Homo sapiens (taxid: 9606)

>sp|A7MB62|ARP2_BOVIN Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Bos taurus (taxid: 9913)

>sp|P53488|ARP2_CHICK Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Gallus gallus (taxid: 9031)

>sp|Q7ZXV3|ARP2B_XENLA Actin-related protein 2-B OS=Xenopus laevis GN=actr2-b PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Xenopus laevis (taxid: 8355)

>sp|Q7ZTP2|ARP2A_XENLA Actin-related protein 2-A OS=Xenopus laevis GN=actr2-a PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
339283894	369	actin [Spodoptera exigua]	0.626	0.113	0.790	3e-11
242007573	375	conserved hypothetical protein [Pediculu	0.626	0.112	0.790	4e-11
189235544	394	PREDICTED: similar to actin [Tribolium c	0.626	0.106	0.790	4e-11
289740925	394	actin-related protein ARP2/3 complex sub	0.626	0.106	0.790	4e-11
125981339	394	GA22112 [Drosophila pseudoobscura pseudo	0.626	0.106	0.790	4e-11
157130317	395	actin [Aedes aegypti] gi|108871910|gb|EA	0.626	0.106	0.790	5e-11
170028731	395	actin [Culex quinquefasciatus] gi|167877	0.626	0.106	0.790	5e-11
347964888	395	AGAP000985-PA [Anopheles gambiae str. PE	0.626	0.106	0.790	5e-11
195447458	394	GK25245 [Drosophila willistoni] gi|19416	0.626	0.106	0.790	5e-11
496881	395	actin related protein [Drosophila melano	0.626	0.106	0.790	5e-11

>gi|339283894|gb|AEJ38216.1| actin [Spodoptera exigua]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVVDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Spodoptera exigua

Species: Spodoptera exigua

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007573|ref|XP_002424614.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508057|gb|EEB11876.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 134 SGVVVDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 175

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235544|ref|XP_001814869.1| PREDICTED: similar to actin [Tribolium castaneum] gi|270003115|gb|EEZ99562.1| hypothetical protein TcasGA2_TC000144 [Tribolium castaneum]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVVDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740925|gb|ADD19210.1| actin-related protein ARP2/3 complex subunit ARP2 [Glossina morsitans morsitans]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125981339|ref|XP_001354676.1| GA22112 [Drosophila pseudoobscura pseudoobscura] gi|54642987|gb|EAL31731.1| GA22112 [Drosophila pseudoobscura pseudoobscura]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVVDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130317|ref|XP_001655658.1| actin [Aedes aegypti] gi|108871910|gb|EAT36135.1| AAEL011750-PA [Aedes aegypti]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028731|ref|XP_001842248.1| actin [Culex quinquefasciatus] gi|167877933|gb|EDS41316.1| actin [Culex quinquefasciatus]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964888|ref|XP_309181.5| AGAP000985-PA [Anopheles gambiae str. PEST] gi|333466524|gb|EAA04899.5| AGAP000985-PA [Anopheles gambiae str. PEST]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447458|ref|XP_002071223.1| GK25245 [Drosophila willistoni] gi|194167308|gb|EDW82209.1| GK25245 [Drosophila willistoni]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 153 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|496881|emb|CAA55238.1| actin related protein [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           S V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct: 154 SGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 195

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0011742	394	Arp2 "Actin-related protein 2"	0.597	0.101	0.804	3.5e-12
UNIPROTKB|F5H6T1	305	ACTR2 "Actin-related protein 2	0.597	0.131	0.780	7.6e-12
UNIPROTKB|F1NRM5	378	ACTR2 "Actin-related protein 2	0.597	0.105	0.780	1.4e-11
UNIPROTKB|F1NHN5	393	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
UNIPROTKB|P53488	394	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
UNIPROTKB|A7MB62	394	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
UNIPROTKB|F1MRG7	394	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
UNIPROTKB|P61160	394	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
UNIPROTKB|B5APU3	394	ACTR2 "Actin-related protein 2	0.597	0.101	0.780	1.6e-11
MGI|MGI:1913963	394	Actr2 "ARP2 actin-related prot	0.597	0.101	0.780	1.6e-11

FB|FBgn0011742 Arp2 "Actin-related protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 33/41 (80%), Positives = 36/41 (87%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE+FALPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRD-ITRYLI 194

GO:0005884 "actin filament" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS

GO:0003779 "actin binding" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=NAS

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F5H6T1 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   100 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 139

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1NRM5 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   139 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 178

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

UNIPROTKB|F1NHN5 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   154 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 193

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

UNIPROTKB|P53488 ACTR2 "Actin-related protein 2" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|A7MB62 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0005515 "protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|F1MRG7 ACTR2 "Actin-related protein 2" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0051653 "spindle localization" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P61160 ACTR2 "Actin-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=RCA;TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

UNIPROTKB|B5APU3 ACTR2 "Actin-related protein 2-like protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0051653 "spindle localization" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0016482 "cytoplasmic transport" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1913963 Actr2 "ARP2 actin-related protein 2" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    26 VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
             V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct:   155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IGI

GO:0008356 "asymmetric cell division" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0030478 "actin cap" evidence=IDA

GO:0033206 "cytokinesis after meiosis" evidence=IGI

GO:0042995 "cell projection" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IGI

GO:0051653 "spindle localization" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61160	ARP2_HUMAN	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
P61161	ARP2_MOUSE	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
P53488	ARP2_CHICK	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
P53489	ARP2_CAEEL	No assigned EC number	0.7560	0.5970	0.1012	yes	N/A
A7MB62	ARP2_BOVIN	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
Q9LSD6	ARP2_ARATH	No assigned EC number	0.5675	0.5373	0.0925	yes	N/A
P20359	ACTG_EMENI	No assigned EC number	0.5365	0.5970	0.1066	yes	N/A
Q5M7U6	ARP2_RAT	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
Q5R4K0	ARP2_PONAB	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
Q5BL41	ARP2_XENTR	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
P32381	ARP2_YEAST	No assigned EC number	0.5178	0.8208	0.1406	yes	N/A
P45888	ARP2_DROME	No assigned EC number	0.7906	0.6268	0.1065	yes	N/A
Q9URS0	ACTG_PENCH	No assigned EC number	0.5121	0.5970	0.1066	yes	N/A
O96621	ARP2_DICDI	No assigned EC number	0.6585	0.5970	0.1020	yes	N/A
Q56A35	ARP2B_DANRE	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A
Q9UUJ1	ARP2_SCHPO	No assigned EC number	0.6136	0.6417	0.1102	yes	N/A
Q7SXW6	ARP2A_DANRE	No assigned EC number	0.7804	0.5970	0.1015	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
smart00268	373	smart00268, ACTIN, Actin	4e-12
pfam00022	367	pfam00022, Actin, Actin	1e-11
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	3e-09
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	2e-08
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	2e-07
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	3e-06
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	0.004

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 8   VCPVQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
           +        Y +     LVI  SGDGVTH+ PV + + LPH  +R+DIAG   IT YL
Sbjct: 129 IAIQAVLSLYASGRTTGLVID-SGDGVTHVVPVVDGYVLPHAIKRIDIAGR-DITDYL 184

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 24  SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67
            LV+  SG GVT + PVYE + L    RR D+AG+  +T YL  
Sbjct: 143 GLVVD-SGAGVTSVVPVYEGYVLQKAIRRSDLAGD-DLTDYLRK 184

Length = 367

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS 67
           SGDGV+H  P+YE ++LPH   RLD+AG   +T Y++ 
Sbjct: 156 SGDGVSHTVPIYEGYSLPHAIHRLDVAGRD-LTEYMMK 192

Length = 378

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 152 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 191

Length = 376

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 16  AYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
           A G+  +  LVI  SGD VTH+ PV +   LP   +R+DI G   IT YL
Sbjct: 150 ASGSSDETGLVID-SGDSVTHVIPVVDGIVLPKAVKRIDIGGRD-ITDYL 197

Length = 444

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
            GDGV H   +YE +++ +   R D+AG   IT YL
Sbjct: 161 CGDGVCHCVSIYEGYSITNTITRTDVAGRD-ITTYL 195

Length = 380

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           SGDGVTH+ PV + + +    + + +AG   IT ++ 
Sbjct: 167 SGDGVTHVIPVVDGYVIGSSIKHIPLAGRD-ITNFIQ 202

Length = 414

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PTZ00452	375	actin; Provisional	99.83
KOG0677|consensus	389		99.83
PTZ00466	380	actin-like protein; Provisional	99.82
KOG0676|consensus	372		99.81
PTZ00281	376	actin; Provisional	99.81
PTZ00004	378	actin-2; Provisional	99.8
PTZ00280	414	Actin-related protein 3; Provisional	99.78
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	99.75
COG5277	444	Actin and related proteins [Cytoskeleton]	99.72
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	99.68
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.66
KOG0679|consensus	426		99.66
KOG0681|consensus	645		99.41
KOG0678|consensus	415		99.41
KOG0680|consensus	400		99.23
KOG0797|consensus	618		98.84
PRK13930	335	rod shape-determining protein MreB; Provisional	98.77
PRK13927	334	rod shape-determining protein MreB; Provisional	98.52
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	98.5
PRK13929	335	rod-share determining protein MreBH; Provisional	98.2
PRK13928	336	rod shape-determining protein Mbl; Provisional	98.17
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	96.32
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	95.91
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	95.35
PRK09472	420	ftsA cell division protein FtsA; Reviewed	93.93
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	93.82
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	93.76
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	93.35
PRK13917	344	plasmid segregation protein ParM; Provisional	91.13
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	90.28
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	90.2
PF01968	290	Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr	90.12
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	88.71
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	87.36
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	83.63
COG1548	330	Predicted transcriptional regulator/sugar kinase [	81.79
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	80.31

>PTZ00452 actin; Provisional

Probab=99.83  E-value=1.1e-21  Score=134.60  Aligned_cols=66  Identities=27%  Similarity=0.434  Sum_probs=62.4

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus       120 ~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~-lt~~L~~  191 (375)
T PTZ00452        120 TQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRL-CTDYLTQ  191 (375)
T ss_pred             HHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchH-HHHHHHH
Confidence            4789999996      5889999999999999999999999999999999999999999999999 9999864

>KOG0677|consensus

Probab=99.83  E-value=5.5e-22  Score=133.18  Aligned_cols=64  Identities=52%  Similarity=0.746  Sum_probs=61.4

Q ss_pred             cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +.|||+|+.      +|++|++|+.|..||+|||+|+++|||+|||||+.+++-.+|+|++|++ +|.||-
T Consensus       122 evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRd-iTryLi  191 (389)
T KOG0677|consen  122 EVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRD-ITRYLI  191 (389)
T ss_pred             HHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchh-HHHHHH
Confidence            679999993      7999999999999999999999999999999999999999999999999 999985

>PTZ00466 actin-like protein; Provisional

Probab=99.82  E-value=7e-21  Score=130.88  Aligned_cols=66  Identities=27%  Similarity=0.389  Sum_probs=62.3

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus       126 ~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~-lt~~L~~  197 (380)
T PTZ00466        126 AEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD-ITTYLGY  197 (380)
T ss_pred             HHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhH-HHHHHHH
Confidence            3789999996      5889999999999999999999999999999999999999999999999 9999863

>KOG0676|consensus

Probab=99.81  E-value=4.2e-21  Score=132.42  Aligned_cols=64  Identities=39%  Similarity=0.665  Sum_probs=58.5

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      +|+|||.||+      .|+++  |+.|+++|+|||+|++.|+++|||+|+++++++.++++||++ +|+||++
T Consensus       119 tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~d-lt~~l~~  188 (372)
T KOG0676|consen  119 TQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRD-LTDYLLK  188 (372)
T ss_pred             HHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchh-hHHHHHH
Confidence            3789999996      35555  999999999999999999999999999999999999999999 9998863

>PTZ00281 actin; Provisional

Probab=99.81  E-value=6.8e-21  Score=130.44  Aligned_cols=66  Identities=33%  Similarity=0.628  Sum_probs=62.3

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      .+++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus       121 ~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~-lt~~L~~  192 (376)
T PTZ00281        121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMMK  192 (376)
T ss_pred             HHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHH-HHHHHHH
Confidence            4789999996      5889999999999999999999999999999999999999999999999 9999964

>PTZ00004 actin-2; Provisional

Probab=99.80  E-value=2.9e-20  Score=127.30  Aligned_cols=66  Identities=32%  Similarity=0.617  Sum_probs=62.2

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      ++++||+|+.|+++|+|||+|++.|+++||+||++++++++|+++||++ +|+||++
T Consensus       121 ~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~-lt~~L~~  192 (378)
T PTZ00004        121 TQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRD-LTEYMMK  192 (378)
T ss_pred             HHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHH-HHHHHHH
Confidence            4789999996      5889999999999999999999999999999999999999999999999 9999863

>PTZ00280 Actin-related protein 3; Provisional

Probab=99.78  E-value=9.7e-20  Score=125.79  Aligned_cols=66  Identities=26%  Similarity=0.414  Sum_probs=61.7

Q ss_pred             CcccccccCc------cceeecceec----------CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTD----------YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY   64 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~----------g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~   64 (67)
                      ++++||+|++      .+++||+|+.          |+++|+|||+|++.|+++||++|++++++++|+++||++ +|++
T Consensus       122 ~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~-lt~~  200 (414)
T PTZ00280        122 AEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD-ITNF  200 (414)
T ss_pred             HHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHH-HHHH
Confidence            4789999996      5789999998          999999999999999999999999999999999999999 9999


Q ss_pred             HhC
Q psy4565          65 LLS   67 (67)
Q Consensus        65 L~~   67 (67)
                      |++
T Consensus       201 L~~  203 (414)
T PTZ00280        201 IQQ  203 (414)
T ss_pred             HHH
Confidence            863

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=99.75  E-value=3.3e-19  Score=121.13  Aligned_cols=65  Identities=25%  Similarity=0.377  Sum_probs=56.9

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ++++||+|++      .+++||+|+.|+++|+|||+|++.|+++||+||++++++++++++||++ ++++|+
T Consensus       114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~-lt~~l~  184 (393)
T PF00022_consen  114 AEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDD-LTEYLK  184 (393)
T ss_dssp             HHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHH-HHHHHH
T ss_pred             hhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHH-HHHHHH
Confidence            3689999996      5789999999999999999999999999999999999999999999999 999986

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.72  E-value=1.5e-18  Score=121.94  Aligned_cols=66  Identities=32%  Similarity=0.494  Sum_probs=62.4

Q ss_pred             CcccccccCc------cceeecceecCce--eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKP--SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~--tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      ++++|++|++|+.  +|+|+|+|++.|||+||+||..++++++|+++||++ +|++|++
T Consensus       126 ~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~-it~~l~~  199 (444)
T COG5277         126 TELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRD-ITDYLKK  199 (444)
T ss_pred             HHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHH-HHHHHHH
Confidence            3689999996      6899999999999  999999999999999999999999999999999999 9999964

>smart00268 ACTIN Actin

Probab=99.68  E-value=1.5e-17  Score=112.74  Aligned_cols=65  Identities=34%  Similarity=0.596  Sum_probs=61.1

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ++++||.|++      .++++|+|+.|+++|+|||+|++.|+++||++|.+++++++++++||++ ++++|+
T Consensus       115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~-l~~~l~  185 (373)
T smart00268      115 LEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRD-LTDYLK  185 (373)
T ss_pred             HHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHH-HHHHHH
Confidence            3689999995      5789999999999999999999999999999999999999999999999 999986

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.66  E-value=3.9e-17  Score=110.82  Aligned_cols=66  Identities=36%  Similarity=0.654  Sum_probs=61.4

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||.|++      .++++|+|+.|+++|+|||+|++.|+++||++|++++++++++++||++ ++++|++
T Consensus       115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~-l~~~l~~  186 (371)
T cd00012         115 TEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRD-LTRYLKE  186 (371)
T ss_pred             HHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHH-HHHHHHH
Confidence            3689999995      5889999999999999999999999999999999999999999999999 9999863

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0679|consensus

Probab=99.66  E-value=2.5e-17  Score=114.04  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      +++|||+|++      ++++++.|++||.|++|||+|+..|++.||+||+++.+++.+.++||.. |++.+++
T Consensus       126 ~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdF-l~~~~~q  197 (426)
T KOG0679|consen  126 TELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDF-LNDQCRQ  197 (426)
T ss_pred             HHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHH-HHHHHHH
Confidence            4789999995      7999999999999999999999999999999999999999999999999 8887753

>KOG0681|consensus

Probab=99.41  E-value=7e-14  Score=100.32  Aligned_cols=65  Identities=20%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             cccccccCc------cceeecceec----CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           2 KLDLEKVCP------VQTYVAYGTD----YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~----g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      +++||+|++      +++++|+|.+    +..+|+||++|+..||++||.||.++...++|+|+||.+ .++||.+
T Consensus       137 elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~q-a~dYL~~  211 (645)
T KOG0681|consen  137 ELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQ-AGDYLSR  211 (645)
T ss_pred             HHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcch-HHHHHHH
Confidence            689999996      5888999853    234799999999999999999999999999999999999 9999963

>KOG0678|consensus

Probab=99.41  E-value=4.7e-14  Score=96.85  Aligned_cols=65  Identities=29%  Similarity=0.464  Sum_probs=58.2

Q ss_pred             CcccccccCc------cceeecceecC--------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDY--------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g--------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .+||||.||+      +|++|||-++.        ..+|+|+|+|++.||++||-||+++..++++++++|++ +|-+.+
T Consensus       126 aeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrd-iT~fiQ  204 (415)
T KOG0678|consen  126 AEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD-ITYFIQ  204 (415)
T ss_pred             HHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCc-hhHHHH
Confidence            3689999996      68888877664        47899999999999999999999999999999999999 998775

>KOG0680|consensus

Probab=99.23  E-value=6.3e-12  Score=86.33  Aligned_cols=64  Identities=22%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             cccccccCc------cceeeccee----cC-------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565           2 KLDLEKVCP------VQTYVAYGT----DY-------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY   64 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~----~g-------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~   64 (67)
                      +++||.|+.      .-+.|+.+.    ..       ...++|||+|++.|||+|+.+|.+...+++|+|+||+. +|.+
T Consensus       114 eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~-LTn~  192 (400)
T KOG0680|consen  114 EILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKA-LTNL  192 (400)
T ss_pred             HHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHH-HHHH
Confidence            689999995      223344433    11       23799999999999999999999999999999999999 9999


Q ss_pred             Hh
Q psy4565          65 LL   66 (67)
Q Consensus        65 L~   66 (67)
                      |+
T Consensus       193 LK  194 (400)
T KOG0680|consen  193 LK  194 (400)
T ss_pred             HH
Confidence            97

>KOG0797|consensus

Probab=98.84  E-value=2.7e-09  Score=76.78  Aligned_cols=55  Identities=25%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          11 VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        11 ~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .+++.+.|++|.++++|||+|+..|+|+.|-||..++++-.++++||.| ||+.+.
T Consensus       263 QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdD-itr~f~  317 (618)
T KOG0797|consen  263 QESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDD-ITRCFL  317 (618)
T ss_pred             hhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCch-HHHHHH
Confidence            3568899999999999999999999999999999999999999999999 998764

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=98.77  E-value=2.9e-09  Score=71.39  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             ccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           3 LDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         3 ~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      -+||++++      .++++|+++.|.     ..++|+|+|++.|+++|+.+|.++.  ..+.++||++ ++++|.
T Consensus       121 ~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~-id~~l~  192 (335)
T PRK13930        121 EAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDE-MDEAIV  192 (335)
T ss_pred             HHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHH-HHHHHH
Confidence            35777764      477888888876     4689999999999999999998875  5678999999 999885

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=98.52  E-value=5.5e-08  Score=65.36  Aligned_cols=61  Identities=8%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             cccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565           2 KLDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +.+||.+++      .++++|+++.|.     ..++|+|+|.+.|+++|+ ++|....+.   .++||++ ++++|.
T Consensus       116 ~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~-id~~l~  188 (334)
T PRK13927        116 RESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDK-FDEAII  188 (334)
T ss_pred             HHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHH-HHHHHH
Confidence            456677664      478888888776     457999999999999999 888776654   4799999 999885

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=98.50  E-value=7.2e-08  Score=65.03  Aligned_cols=60  Identities=8%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             ccccccCc------cceeecceecCc-----eeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565           3 LDLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         3 ~~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .+||.+++      .++++|+|+.|.     ..++|+|+|.+.|+++|+ ++|......   .++||++ +++.|.
T Consensus       119 ~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~d-id~~l~  190 (333)
T TIGR00904       119 ESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDE-FDEAII  190 (333)
T ss_pred             HHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHH-HHHHHH
Confidence            35677664      578888888876     678999999999999999 787776654   4799999 999874

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.20  E-value=1.2e-06  Score=59.54  Aligned_cols=52  Identities=13%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             cceeecceecC-----ceeEEEEecCCceeEEeee-ccceecccceEEEeccchHHHHHHHh
Q psy4565          11 VQTYVAYGTDY-----KPSLVITFSGDGVTHICPV-YEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        11 ~~~~la~~~~g-----~~tglvvd~G~~~t~i~Pv-~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .++++|+++.|     ...++|+|+|.+.|+++|+ ++|....   ..+++||++ ++++|.
T Consensus       133 ~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~-id~~l~  190 (335)
T PRK13929        133 EEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQ-LDEDIV  190 (335)
T ss_pred             cCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHH-HHHHHH
Confidence            47788888776     4679999999999999999 6665543   346799999 998875

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=98.17  E-value=7.7e-07  Score=60.17  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=47.9

Q ss_pred             cccccCc------cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           4 DLEKVCP------VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         4 ~fe~~~~------~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +||++++      .+++.|+++.|.     ...+|+|+|.+.|.+.++..|..+..  ..+++||++ +++.|.
T Consensus       117 a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~d-id~~i~  187 (336)
T PRK13928        117 AAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDK-FDEAII  187 (336)
T ss_pred             HHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHH-HHHHHH
Confidence            4555553      577888888775     56899999999999999999876654  378999999 998874

>TIGR01174 ftsA cell division protein FtsA

Probab=96.32  E-value=0.007  Score=41.49  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .-+|+|+|.+.|.++.+.+|.+..  .+.+++||++ +|+-+.
T Consensus       197 ~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~-it~~i~  236 (371)
T TIGR01174       197 GVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNH-ITKDIA  236 (371)
T ss_pred             CEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHH-HHHHHH
Confidence            468999999999999999987654  5679999999 998764

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=95.91  E-value=0.0092  Score=39.05  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             CceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          21 YKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        21 g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +....+|+|+|.+.|.+.=+.+|.+..  .+.+++||++ +|+.+.
T Consensus       106 ~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~-it~~Ia  148 (239)
T TIGR02529       106 QIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTH-MSLVLA  148 (239)
T ss_pred             cCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHH-HHHHHH
Confidence            334569999999999988777887665  5577899999 998764

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=95.35  E-value=0.014  Score=38.75  Aligned_cols=41  Identities=15%  Similarity=0.088  Sum_probs=33.4

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..++++|+|.+.|.+.=+.+|.+...  +.+++||++ +|+-+.
T Consensus       135 ~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~-it~~Ia  175 (267)
T PRK15080        135 DNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTH-MSLVLA  175 (267)
T ss_pred             CCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHH-HHHHHH
Confidence            44799999999999887778876653  567999999 998764

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=93.93  E-value=0.11  Score=36.54  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=33.3

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..+++|+|.+.|.+.=+.+|.+.  ....+++||.+ +|+-+.
T Consensus       205 gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~-it~dIa  244 (420)
T PRK09472        205 GVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNV-VTSDIA  244 (420)
T ss_pred             CeEEEEeCCCceEEEEEECCEEE--EEeeeechHHH-HHHHHH
Confidence            47899999999999988888655  45689999998 888763

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=93.82  E-value=0.12  Score=34.79  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=34.0

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..++||+|++.|.++-+.+|.+..  .+.+++||.+ +|+-+.
T Consensus       189 ~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~-i~~~i~  228 (348)
T TIGR01175       189 DAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQ-LTSELS  228 (348)
T ss_pred             eEEEEEECCCcEEEEEEECCeEEE--EEEeechHHH-HHHHHH
Confidence            488999999999999999997765  5689999998 887653

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=93.76  E-value=0.04  Score=37.99  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             cceeecceecCc----e-eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          11 VQTYVAYGTDYK----P-SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        11 ~~~~la~~~~g~----~-tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      .+++.++++.|.    + ..+|||+|.+.|.++=+-.|-.+.  .+.+.+||.+ +.+-+
T Consensus       128 ~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~-~DeaI  184 (326)
T PF06723_consen  128 EEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDD-IDEAI  184 (326)
T ss_dssp             EHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHH-HHHHH
T ss_pred             cchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcc-hhHHH
Confidence            467788888774    2 469999999999999887777654  5578899987 66654

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=93.35  E-value=0.16  Score=36.32  Aligned_cols=40  Identities=15%  Similarity=0.154  Sum_probs=33.7

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      ...++||+|.+.|.+.-..+|.+....  .+++||++ +|.=+
T Consensus       203 lGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~-vT~DI  242 (418)
T COG0849         203 LGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDH-VTKDI  242 (418)
T ss_pred             cCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccH-HHHHH
Confidence            557899999999999999999776544  89999998 88744

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=91.13  E-value=0.32  Score=33.48  Aligned_cols=40  Identities=8%  Similarity=0.033  Sum_probs=33.4

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY   64 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~   64 (67)
                      .-+|||+|+++|.++-+-++.+....+..++.|..+ +-+.
T Consensus       186 ~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~-~~~~  225 (344)
T PRK13917        186 KVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTID-VYKR  225 (344)
T ss_pred             cEEEEEcCCCcEEEEEEeCcEEcccccccccchHHH-HHHH
Confidence            459999999999999988888888888889999876 5443

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=90.28  E-value=0.6  Score=31.74  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +-.+||+|+..|+++=+.+|.++.  .+.+++||++ +++-+.
T Consensus       181 ~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~-l~~~i~  220 (340)
T PF11104_consen  181 TVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGND-LTEAIA  220 (340)
T ss_dssp             EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHH-HHHHHH
T ss_pred             eEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHH-HHHHHH
Confidence            458999999999999999998774  5578999998 887553

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=90.20  E-value=0.19  Score=33.99  Aligned_cols=43  Identities=14%  Similarity=-0.044  Sum_probs=33.1

Q ss_pred             ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      ...-+|||+|+.+|.++-+-++.+....+...+.|-.+ +.+-+
T Consensus       166 ~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~-~~~~I  208 (320)
T TIGR03739       166 KEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSD-IYRLL  208 (320)
T ss_pred             cCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHH-HHHHH
Confidence            34569999999999999887777777777778888766 55443

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3

Probab=90.12  E-value=0.27  Score=33.09  Aligned_cols=29  Identities=10%  Similarity=-0.030  Sum_probs=21.7

Q ss_pred             ecCceeEEEEecCCceeEEeeeccceecc
Q psy4565          19 TDYKPSLVITFSGDGVTHICPVYEQFALP   47 (67)
Q Consensus        19 ~~g~~tglvvd~G~~~t~i~Pv~~G~~l~   47 (67)
                      ..+..+.+++|+|..+|.+.+|.+|.+..
T Consensus        73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~  101 (290)
T PF01968_consen   73 LTGLENAIVVDMGGTTTDIALIKDGRPEI  101 (290)
T ss_dssp             -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred             cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence            45778999999999999999999999863

5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=88.71  E-value=0.34  Score=35.28  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=31.2

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHIT   62 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt   62 (67)
                      ...++||+|.+.|+++=..+|.....  ..+++||++ +|
T Consensus       146 ~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~-IT  182 (475)
T PRK10719        146 TRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRL-IE  182 (475)
T ss_pred             CceEEEEeCCCceEEEEEECCEEEEE--EEEecccce-EE
Confidence            55788999999999999999987654  478999987 65

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.36  E-value=0.71  Score=32.46  Aligned_cols=40  Identities=10%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             EEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565          25 LVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus        25 glvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ..|+|+|+..|.++-+.+|+++..  +..++||++ +|+-+++
T Consensus       195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Q-lt~~i~r  234 (354)
T COG4972         195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQ-LTQEIQR  234 (354)
T ss_pred             heeeeecccceEEEEEECCeeeeE--eeccCcHHH-HHHHHHH
Confidence            358999999999999999998875  478999999 8987653

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=83.63  E-value=1.3  Score=30.66  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             ceeEEEEecCCceeEEeeeccceeccc
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQFALPH   48 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~   48 (67)
                      ...++.+|+|..+|.++||.+|.+...
T Consensus       127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~  153 (318)
T TIGR03123       127 IPECLFVDMGSTTTDIIPIIDGEVAAK  153 (318)
T ss_pred             CCCEEEEEcCccceeeEEecCCEeeee
Confidence            678999999999999999999998754

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=81.79  E-value=1.1  Score=30.84  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             ceeEEEEecCCceeEEeeeccce
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQF   44 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~   44 (67)
                      ..+.+-||.|...|.++||.+|.
T Consensus       129 ~dsci~VD~GSTTtDIIPi~~ge  151 (330)
T COG1548         129 KDSCILVDMGSTTTDIIPIKDGE  151 (330)
T ss_pred             CCceEEEecCCcccceEeecchh
Confidence            35699999999999999999996

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=80.31  E-value=0.52  Score=31.55  Aligned_cols=37  Identities=16%  Similarity=-0.068  Sum_probs=30.5

Q ss_pred             eeecceecCceeEEEEecCCceeEEeeeccceecccc
Q psy4565          13 TYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHL   49 (67)
Q Consensus        13 ~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~   49 (67)
                      +..+.+-.+...|.|||+|.+.|-|.-+-+|.++..+
T Consensus       130 PTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A  166 (277)
T COG4820         130 PTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA  166 (277)
T ss_pred             chhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec
Confidence            4455666678999999999999999999999988544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		6e-13
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		6e-13
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		6e-07
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		6e-07
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		1e-06
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		1e-06
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		1e-06
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		1e-06
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		1e-06
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		1e-06
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		1e-06
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		1e-06
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		1e-06
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		1e-06
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		1e-06
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		1e-06
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		1e-06
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		1e-06
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		1e-06
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		1e-06
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		1e-06
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		1e-06
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		1e-06
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		1e-06
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		1e-06
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		1e-06
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		1e-06
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		1e-06
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		2e-06
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		2e-06
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		2e-06
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		2e-06
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		2e-06
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		2e-06
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		2e-06
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		2e-06
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		2e-06
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		3e-06
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		3e-06
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		9e-06
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		1e-05

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI 194

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 146 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 185

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 145 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 184

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 150 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 189

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 144 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 183

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 VVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 152 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 191

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 190

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 153 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 192

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 152 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 191

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 146 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 185

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 135 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 174

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 146 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 185

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 147 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 186

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 190

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 146 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 185

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 153 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 192

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 152 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 191

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 190

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 190

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 147 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM 186

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 150 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 189

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 11  VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           +Q  ++  +  + + ++  SGDGVTH+ P+Y  F+LPH   R+D+AG   +T YL+
Sbjct: 131 IQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRD-LTDYLM 185

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 11  VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           +Q  ++  +  + + ++  SGDGVTH+ P+Y  F+LPH   R+D+AG   +T YL+
Sbjct: 136 IQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRD-LTDYLM 190

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 144 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 183

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T Y++
Sbjct: 151 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYMM 190

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 150 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 189

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           ++  SGDGV+H  P+YE +ALPH   RLD+AG   +T YL+
Sbjct: 151 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-LTDYLM 190

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 11  VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           +Q  ++  +  + + ++  SGDG TH+ P+Y  F+LPH   R+D+AG   +T YL+
Sbjct: 131 IQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRD-LTDYLM 185

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 11  VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           +Q  ++  +  + + ++  SGDG TH+ P+Y  F+LPH   R+D+AG   +T YL+
Sbjct: 136 IQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRD-LTDYLM 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	1e-13
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	2e-13
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	6e-13
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	6e-13
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	4e-12

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
           SGDGVTH+ PV E + +    + + IAG   IT ++
Sbjct: 170 SGDGVTHVIPVAEGYVIGSCIKHIPIAG-RDITYFI 204

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 17  YGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
           Y +     +V+  SGDGVTH  P+YE +ALPH   RLD+AG   +T YL
Sbjct: 143 YASGRTTGIVL-DSGDGVTHNVPIYEGYALPHAIMRLDLAG-RDLTDYL 189

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 60.1 bits (146), Expect = 6e-13
 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 26  VITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           V+  SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL+
Sbjct: 155 VVVDSGDGVTHICPVYEGFSLPHLTRRLDIAG-RDITRYLI 194

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 60.2 bits (146), Expect = 6e-13
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL 66
           SGDGVTHI PV E + +    + + +AG   +T ++ 
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAG-RDVTYFVQ 221

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 58.1 bits (140), Expect = 4e-12
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 30  SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
            G     + P+ +   L   TRR  IAG   I   +
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAG-KFINHLI 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	99.84
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.78
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	99.78
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.75
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.71
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	99.64
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.52
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	98.04
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.95
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	96.26
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	96.21
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	96.13
3js6_A	355	Uncharacterized PARM protein; partition, segregati	95.95
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	95.79
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	95.56
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	95.41
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	95.05
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	95.01
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	94.15
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	93.49
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	88.83
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	86.32
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	85.51
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	85.45
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	85.08
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	84.92
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	83.83

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=99.84  E-value=3e-22  Score=140.43  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      .+++||+|+.|++||+|||+|++.|+|+||+||++++++++|+++||++ +|+||++
T Consensus       218 ~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~-lt~~L~~  289 (593)
T 4fo0_A          218 VNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSD-VSRCFYW  289 (593)
T ss_dssp             HHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHH-HHHHHHH
T ss_pred             HHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHHH-HHHHHHH
Confidence            4789999996      5899999999999999999999999999999999999999999999999 9999863

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.5e-20  Score=131.13  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      +++||+|++      .++++|+|+.|+++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus       135 eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~-lt~~L~~  205 (498)
T 3qb0_A          135 EVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKF-INHLIKK  205 (498)
T ss_dssp             HHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHH-HHHHHHH
T ss_pred             HHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHH-HHHHHHH
Confidence            689999996      5789999999999999999999999999999999999999999999999 9999863

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.78  E-value=3.4e-20  Score=127.95  Aligned_cols=65  Identities=29%  Similarity=0.459  Sum_probs=61.0

Q ss_pred             cccccccCc------cceeecceecC--------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           2 KLDLEKVCP------VQTYVAYGTDY--------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~g--------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      +++||+|++      +++++|+|++|        +++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus       144 ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~-lt~~L~~  222 (427)
T 3dwl_A          144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD-VTYFVQS  222 (427)
T ss_dssp             HHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHHH
T ss_pred             HHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHH-HHHHHHH
Confidence            789999996      58999999998        68999999999999999999999999999999999999 9999863

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.75  E-value=1.6e-19  Score=130.25  Aligned_cols=66  Identities=23%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             CcccccccCc------cceeecceecC-ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDY-KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g-~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ++++||+|++      .++++|+|+.| +++|+|||+|++.|+++||++|++++++++|+++||++ +|+||++
T Consensus       241 ~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~d-LT~yL~k  313 (655)
T 4am6_A          241 IRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDD-ITRLFAL  313 (655)
T ss_dssp             HHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHHH
T ss_pred             HHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHH-HHHHHHH
Confidence            3789999996      57899999999 79999999999999999999999999999999999999 9999863

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.71  E-value=3.8e-18  Score=115.76  Aligned_cols=65  Identities=52%  Similarity=0.794  Sum_probs=40.0

Q ss_pred             CcccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ++++||.|++      .++++|+|+.|+++|+|||+|++.|+++||++|++++++++++++||++ +|++|.
T Consensus       124 ~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~-lt~~l~  194 (394)
T 1k8k_B          124 VEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI  194 (394)
T ss_dssp             ------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHH-HHHHHH
T ss_pred             HHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHH-HHHHHH
Confidence            4689999995      5799999999999999999999999999999999999999999999999 999986

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=99.64  E-value=5.1e-17  Score=109.28  Aligned_cols=64  Identities=38%  Similarity=0.639  Sum_probs=60.3

Q ss_pred             cccccccCc------cceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           2 KLDLEKVCP------VQTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +++||.|++      .++++|+|+.|+.+++|||+|++.|+++||++|++++++..++++||++ +|++|.
T Consensus       121 e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~-lt~~l~  190 (375)
T 2fxu_A          121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLM  190 (375)
T ss_dssp             HHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHH
T ss_pred             HHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHH-HHHHHH
Confidence            578999996      5889999999999999999999999999999999999999999999999 999985

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.52  E-value=3.4e-15  Score=101.19  Aligned_cols=63  Identities=30%  Similarity=0.449  Sum_probs=57.2

Q ss_pred             cccccccCc------cceeeccee---------cCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565           2 KLDLEKVCP------VQTYVAYGT---------DYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus         2 ~~~fe~~~~------~~~~la~~~---------~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      +++||.|++      .++++|+|+         .++ +|+|||+|++.|+++||++|+++.+++.++++||++ +|++|.
T Consensus       128 e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~-lt~~l~  205 (418)
T 1k8k_A          128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD-ITYFIQ  205 (418)
T ss_dssp             HHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHH-HHHHHH
T ss_pred             HHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHH-HHHHHH
Confidence            578999985      578888888         566 999999999999999999999999999999999999 999885

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=98.04  E-value=2.1e-06  Score=56.42  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             cceeecceecCc-----eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          11 VQTYVAYGTDYK-----PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        11 ~~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .++..|+++.+.     .+.+|+|+|.+.|+++++..|.++.  ....++||++ +++.|.
T Consensus       130 ~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~-id~~l~  187 (344)
T 1jce_A          130 EEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDE-MDEAIV  187 (344)
T ss_dssp             EHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHH-HHHHHH
T ss_pred             CCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChh-HHHHHH
Confidence            466777777664     6799999999999999999988764  4688999999 998875

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.95  E-value=1.4e-06  Score=55.47  Aligned_cols=52  Identities=15%  Similarity=0.026  Sum_probs=43.9

Q ss_pred             ceeecceecCceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          12 QTYVAYGTDYKPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        12 ~~~la~~~~g~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ++..++++.+..+++|+|+|.+.|.++++.+|.+..  ....++||.+ +++.+.
T Consensus       128 e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~Gg~~-~~~~l~  179 (272)
T 3h1q_A          128 EPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTGGTH-LSLVLA  179 (272)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCCHHH-HHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCcHHH-HHHHHH
Confidence            556677777888899999999999999999998774  4688999999 888764

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=96.26  E-value=0.0017  Score=42.93  Aligned_cols=55  Identities=13%  Similarity=0.007  Sum_probs=36.1

Q ss_pred             cceeecceecCc------eeEEEEecCCceeEEeeeccc------eeccc-ceEEEeccchHHHHHHHh
Q psy4565          11 VQTYVAYGTDYK------PSLVITFSGDGVTHICPVYEQ------FALPH-LTRRLDIAGESHITRYLL   66 (67)
Q Consensus        11 ~~~~la~~~~g~------~tglvvd~G~~~t~i~Pv~~G------~~l~~-~~~~~~~gG~~~lt~~L~   66 (67)
                      .++..|+++.+.      .+.+|+|+|.++|.++.+-.+      ..... .....++||.+ +++.|.
T Consensus       170 ~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~-id~~l~  237 (383)
T 1dkg_D          170 NEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED-FDSRLI  237 (383)
T ss_dssp             BHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHH-HHHHHH
T ss_pred             ccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHH-HHHHHH
Confidence            345555544332      468999999999999966543      21111 23446899999 888774

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=96.21  E-value=0.0064  Score=40.08  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=34.3

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..+|+|+|.+.|.++.+.+|.+..  .+.+++||.+ +++.+.
T Consensus       192 ~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~-i~~~i~  231 (377)
T 2ych_A          192 VFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKD-FTEAIA  231 (377)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHH-HHHHHH
T ss_pred             eEEEEEECCCcEEEEEEECCEEEE--EEeeechHHH-HHHHHH
Confidence            359999999999999999998764  4678999999 998764

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=96.13  E-value=0.012  Score=38.88  Aligned_cols=43  Identities=5%  Similarity=-0.168  Sum_probs=37.4

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..-+|||+|.++|.++-+-+|.+.......+++||.+ +++-+.
T Consensus       172 ~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~-~~~~i~  214 (329)
T 4apw_A          172 KNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKD-LIIRVG  214 (329)
T ss_dssp             CEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHH
T ss_pred             CCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHH-HHHHHH
Confidence            5568999999999999999999887777889999998 887664

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=95.95  E-value=0.0059  Score=40.90  Aligned_cols=54  Identities=9%  Similarity=-0.062  Sum_probs=42.0

Q ss_pred             cceeecceecC-----------ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          11 VQTYVAYGTDY-----------KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        11 ~~~~la~~~~g-----------~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      +|+.-|+++.+           ...-+|||+|.++|.++-+.+|.+.+..+..+++||.+ +.+-+
T Consensus       161 pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~-~~~~i  225 (355)
T 3js6_A          161 AQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTID-FYKRI  225 (355)
T ss_dssp             EHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHH
T ss_pred             eCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHH-HHHHH
Confidence            46666666543           34568999999999999998888888888899999987 66544

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=95.79  E-value=0.012  Score=39.03  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=33.2

Q ss_pred             eEEEEecCCceeEEeeec--cceecccceEEEeccchHHHHHHH
Q psy4565          24 SLVITFSGDGVTHICPVY--EQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~--~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      +-+|+|+|.++|.+.-+-  +|.+.......+++||.+ +++.+
T Consensus       191 ~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~-i~~~I  233 (346)
T 2fsj_A          191 YGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGD-AISAL  233 (346)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHH-HHHHH
T ss_pred             cEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHH-HHHHH
Confidence            349999999999999886  677666657888999987 77655

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=95.41  E-value=0.0065  Score=42.17  Aligned_cols=54  Identities=7%  Similarity=0.092  Sum_probs=36.8

Q ss_pred             ceeecceecCc-----eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565          12 QTYVAYGTDYK-----PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        12 ~~~la~~~~g~-----~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ++..|+++.|.     .+.+|+|+|.+++.+..+-  +|.. +.......++||.+ +++.|.
T Consensus       145 Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d-~d~~l~  206 (509)
T 2v7y_A          145 EPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDD-FDQVII  206 (509)
T ss_dssp             HHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred             CHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHH-HHHHHH
Confidence            45555555443     5799999999999999654  2532 22233456899999 888764

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=95.05  E-value=0.023  Score=36.94  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             eeEEEEecCCceeEEeeecccee-cccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ...+|+|+|.++|.+.-+-+|.+ +.......++||.+ +++-+.
T Consensus       164 ~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~-~~~~I~  207 (320)
T 2zgy_A          164 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSL-VTSAVK  207 (320)
T ss_dssp             CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHH-HHHHHH
T ss_pred             CCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHH-HHHHHH
Confidence            46799999999999998888776 33345677999998 877653

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=95.01  E-value=0.028  Score=38.41  Aligned_cols=40  Identities=8%  Similarity=0.101  Sum_probs=34.1

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..+++|+|.+.|.++-+.+|.+..  ...+++||.+ +|+-+.
T Consensus       207 gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~-it~dIa  246 (419)
T 4a2a_A          207 GVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKH-VIKDVS  246 (419)
T ss_dssp             CEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHH-HHHHHH
T ss_pred             CEEEEEECCCcEEEEEEECCEEEE--EEecccHHHH-HHHHHH
Confidence            578999999999999999998765  4578999999 988653

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=94.15  E-value=0.038  Score=37.44  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             eeEEEEecCCceeEEeeeccceeccc
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPH   48 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~   48 (67)
                      .++++||+|..+|.++|+.+|.|+..
T Consensus       127 ~~~llvDIGsTTTDIipi~~G~pl~g  152 (334)
T 3cet_A          127 ENCILVDMGSTTTDIIPIVEGKVVAE  152 (334)
T ss_dssp             SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred             CCEEEEEcCcchhhhhhhcCCeeccc
Confidence            57999999999999999999999763

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=93.49  E-value=0.022  Score=37.78  Aligned_cols=42  Identities=12%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             eEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565          24 SLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .-+|+|+|.+++.+.-+-  ++.. +.......++||.+ +++.|.
T Consensus       215 ~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~-~d~~l~  259 (404)
T 3i33_A          215 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED-FDNRMV  259 (404)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred             eEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHH-HHHHHH
Confidence            359999999999997552  3322 22223447899998 887763

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=88.83  E-value=0.41  Score=33.61  Aligned_cols=43  Identities=12%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ...+|+|+|.+++.+.-+-  +|.. +.......++||.+ +++.|.
T Consensus       193 ~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d-~d~~l~  238 (554)
T 1yuw_A          193 RNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGED-FDNRMV  238 (554)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred             cEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHH-HHHHHH
Confidence            5689999999999998654  4543 22233456899998 887653

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=86.32  E-value=0.68  Score=33.46  Aligned_cols=43  Identities=5%  Similarity=-0.070  Sum_probs=29.9

Q ss_pred             eeEEEEecCCceeEEeeec--ccee-cccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVY--EQFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~--~G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ...+|+|+|.+++.+.-+-  +|.. +.....-.++||.+ +++.|.
T Consensus       197 ~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d-~D~~l~  242 (675)
T 3d2f_A          197 RIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRD-FDLAIT  242 (675)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH-HHHHHH
T ss_pred             cEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHH-HHHHHH
Confidence            5689999999999997653  4543 22223346799998 877653

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=85.51  E-value=0.83  Score=33.21  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      .-..++|+|.++|.+.=+.+|.....  ..++.||.+ +|.-+
T Consensus       407 LGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~-VT~DI  446 (610)
T 2d0o_A          407 RPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDM-VTMII  446 (610)
T ss_dssp             SSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHH-HHHHH
T ss_pred             CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHH-HHHHH
Confidence            34678999999999998888876654  488999998 99865

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=85.45  E-value=0.84  Score=33.20  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             eeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      .-..++|+|.++|.+.=+.+|.....  ..++.||.+ +|.-+
T Consensus       409 lGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~-VT~DI  448 (607)
T 1nbw_A          409 APLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNM-VSLLI  448 (607)
T ss_dssp             SSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHH-HHHHH
T ss_pred             CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHH-HHHHH
Confidence            34678999999999998888876654  488999998 99865

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=85.08  E-value=1.3  Score=29.45  Aligned_cols=42  Identities=12%  Similarity=0.069  Sum_probs=31.6

Q ss_pred             eeEEEEecCCceeEEeeecc--ceec--ccceEEEeccchHHHHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYE--QFAL--PHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~--G~~l--~~~~~~~~~gG~~~lt~~L   65 (67)
                      ..++++|+|.++|.++-.-+  +.+.  ......+++|+.. +++-+
T Consensus       146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v~-lt~~~  191 (343)
T 3cer_A          146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVR-MTERH  191 (343)
T ss_dssp             SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHHH-HHHHT
T ss_pred             CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHHH-HHHHh
Confidence            46999999999999986655  3321  1357789999988 77754

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=84.92  E-value=1.7  Score=28.61  Aligned_cols=41  Identities=15%  Similarity=0.007  Sum_probs=32.4

Q ss_pred             ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      ..+++|+|+|.++|.++-.-++.+.  ....+++|+.. +++.+
T Consensus       137 ~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v~-l~e~~  177 (315)
T 1t6c_A          137 EGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVN-LTETF  177 (315)
T ss_dssp             CSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHH-HHHHH
T ss_pred             CCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHHH-HHHHh
Confidence            4579999999999999877666553  46689999987 77654

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=83.83  E-value=0.96  Score=32.08  Aligned_cols=43  Identities=14%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             eeEEEEecCCceeEEeeecc------cee-cccceEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVYE------QFA-LPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~------G~~-l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      ..-+|+|+|.+++.+.-+--      |.. +.......++||.+ +++.|.
T Consensus       188 ~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d-~D~~l~  237 (605)
T 2kho_A          188 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED-FDSRLI  237 (605)
T ss_dssp             EEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGG-THHHHH
T ss_pred             CEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHH-HHHHHH
Confidence            45899999999999986642      322 11122345799998 887663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	9e-12
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	2e-11
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	8e-11

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (133), Expect = 9e-12
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTH+ PV E + +    + + IAG   IT ++
Sbjct: 10 SGDGVTHVIPVAEGYVIGSCIKHIPIAGR-DITYFI 44

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 2e-11
 Identities = 31/36 (86%), Positives = 32/36 (88%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTHICPVYE F+LPHLTRRLDIAG   ITRYL
Sbjct: 6  SGDGVTHICPVYEGFSLPHLTRRLDIAG-RDITRYL 40

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (125), Expect = 8e-11
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 30 SGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL 65
          SGDGVTH  P+YE +ALPH   RLD+AG   +T YL
Sbjct: 9  SGDGVTHNVPIYEGYALPHAIMRLDLAGR-DLTDYL 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.48
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	99.46
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	97.51
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	97.01
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	94.78
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	93.53
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	86.98
d1u6za3	177	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	81.19
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	80.22

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.2e-15  Score=95.46  Aligned_cols=45  Identities=49%  Similarity=0.874  Sum_probs=43.0

Q ss_pred             ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      |+||+|||+|++.|+|+||+||++++++++++++||++ +|++|++
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~-lt~~l~~   45 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRD-LTDYLMK   45 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHH-HHHHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHH-HHHHHHH
Confidence            68999999999999999999999999999999999999 9999863

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=1.3e-14  Score=92.19  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=42.3

Q ss_pred             ceeEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHhC
Q psy4565          22 KPSLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLLS   67 (67)
Q Consensus        22 ~~tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~~   67 (67)
                      ..||+|||+|++.|+|+||+||++++++++++++||++ +|++|++
T Consensus         2 ~~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~-lt~~L~~   46 (258)
T d1k8ka2           2 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD-ITYFIQQ   46 (258)
T ss_dssp             CCCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHH-HHHHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHH-HHHHHHH
Confidence            35899999999999999999999999999999999999 9999863

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=1.3e-14  Score=89.00  Aligned_cols=41  Identities=78%  Similarity=1.270  Sum_probs=39.8

Q ss_pred             EEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          25 LVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        25 glvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      |+|||+|++.|+++||+||++++++++++++||++ ++++|+
T Consensus         1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~igG~~-lt~~l~   41 (190)
T d1k8kb1           1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRD-ITRYLI   41 (190)
T ss_dssp             CCEEEECSSCEEEECEETTEECSTTCEEESCCHHH-HHHHHH
T ss_pred             CEEEEcCCCcEEEEEeECCEEcccceEEEeccHHH-HHHHHH
Confidence            78999999999999999999999999999999999 999986

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=1.1e-06  Score=51.82  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             CcccccccCc------cceeecceecCceeEE
Q psy4565           1 MKLDLEKVCP------VQTYVAYGTDYKPSLV   26 (67)
Q Consensus         1 ~~~~fe~~~~------~~~~la~~~~g~~tgl   26 (67)
                      ++++||+|++      ++++||+||+|+++++
T Consensus       125 ~EilFE~~~vpa~~~~~~~~Lslya~g~~~~~  156 (158)
T d1k8ka1         125 AEIMFESFNVPGLYIAVQAVLALAASWTSRQV  156 (158)
T ss_dssp             HHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTC
T ss_pred             HHHHhhhcCCCEEEEEchhhhhheeCCCCCCC
Confidence            4799999996      6899999999998764

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00029  Score=41.94  Aligned_cols=39  Identities=8%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             EEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHHh
Q psy4565          25 LVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYLL   66 (67)
Q Consensus        25 glvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L~   66 (67)
                      .++||+|.+.|.++.+.+|.+...  +.+++||++ +|+-|.
T Consensus         9 v~vvDiG~~tt~i~i~~~G~l~~~--~~i~~GG~~-iT~~Ia   47 (191)
T d1e4ft2           9 VVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKH-VIKDVS   47 (191)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEE--EEESCCHHH-HHHHHH
T ss_pred             EEEEEeCCCcEEEEEEECCeEEEE--EEEeeChHH-HHHHHH
Confidence            579999999999999999987654  578999999 998764

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.022  Score=31.74  Aligned_cols=43  Identities=16%  Similarity=0.054  Sum_probs=30.5

Q ss_pred             eeEEEEecCCceeEEeeeccceecccc-eEEEeccchHHHHHHHh
Q psy4565          23 PSLVITFSGDGVTHICPVYEQFALPHL-TRRLDIAGESHITRYLL   66 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G~~l~~~-~~~~~~gG~~~lt~~L~   66 (67)
                      .+-+|+|+|.++|.++.+-.+...... ..-.+.||.+ +++-+.
T Consensus         7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G~~~-i~~~i~   50 (163)
T d2zgya2           7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSL-VTSAVK   50 (163)
T ss_dssp             CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHH-HHHHHH
T ss_pred             CCEEEEECCCCcEEEEEEcCCeEEEEEeeccccccchH-HHHHHH
Confidence            457899999999999966444443333 3456789988 877653

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.53  E-value=0.071  Score=29.67  Aligned_cols=42  Identities=17%  Similarity=0.050  Sum_probs=30.4

Q ss_pred             eeEEEEecCCceeEEeeeccc--eecccceEEEeccchHHHHHHH
Q psy4565          23 PSLVITFSGDGVTHICPVYEQ--FALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        23 ~tglvvd~G~~~t~i~Pv~~G--~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      ...+|+|+|.++|.++-+-.+  .+......-.+.|+.+ +.+.+
T Consensus         6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g~~~-i~~~i   49 (161)
T d2fsja1           6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGD-AISAL   49 (161)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHH-HHHHH
T ss_pred             CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHHHHH-HHHHH
Confidence            357999999999999877554  3444445567788887 76655

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=86.98  E-value=0.51  Score=26.20  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHHH
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRYL   65 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~L   65 (67)
                      ..+|+|+|.+++.++=+..|.....  ..++.||.+ ++.-+
T Consensus         8 gvlV~DiGGGT~Dvsi~~~g~~~~~--~~~~~gg~~-~~~~~   46 (196)
T d1jcea2           8 GNMVVDIGGGTTEVAVISLGSIVTW--ESIRIAGDE-MDEAI   46 (196)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEEEE--EEESCSHHH-HHHHH
T ss_pred             ceEEEEcCCCcEEEEEEEcCCEeEE--eeecCCCcc-cccch
Confidence            4689999999999987766765443  366778877 66543

>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=1.2  Score=24.86  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=28.8

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY   64 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~   64 (67)
                      ..+|+|+|-++|.++-+-++.+.  ....+++|.-. +++.
T Consensus         3 r~Lv~DIGGGStEl~~~~~~~~~--~~~Sl~lG~vr-l~e~   40 (177)
T d1u6za3           3 RKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVS-FAQL   40 (177)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHH-HHHH
T ss_pred             CEEEEEeCCChhheEEEECCcEe--EEEEeccceEE-eecc
Confidence            47999999999999977666544  35588999766 5553

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.22  E-value=1.4  Score=24.97  Aligned_cols=38  Identities=16%  Similarity=-0.007  Sum_probs=29.2

Q ss_pred             eEEEEecCCceeEEeeeccceecccceEEEeccchHHHHHH
Q psy4565          24 SLVITFSGDGVTHICPVYEQFALPHLTRRLDIAGESHITRY   64 (67)
Q Consensus        24 tglvvd~G~~~t~i~Pv~~G~~l~~~~~~~~~gG~~~lt~~   64 (67)
                      ..+|+|+|-++|.++=+-++.+.  ....+++|.-. +++.
T Consensus         4 ~~lviDIGGGStEli~~~~~~i~--~~~Sl~lG~vr-l~e~   41 (180)
T d1t6ca2           4 EVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVN-LTET   41 (180)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHH-HHHH
T ss_pred             CEEEEEeCCChHhhEEeeCCcee--eEEEeecceEE-eecc
Confidence            67999999999999877666544  35688999876 6653